Query 024740
Match_columns 263
No_of_seqs 212 out of 828
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 1.8E-36 6.2E-41 246.7 11.6 115 68-182 4-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 6.2E-30 2.1E-34 201.2 9.4 94 89-182 2-97 (97)
3 2byk_A Chrac-16; nucleosome sl 99.9 1.3E-27 4.5E-32 200.0 7.1 93 99-191 14-107 (140)
4 1jfi_A Transcription regulator 99.9 1.7E-27 5.8E-32 187.9 6.5 87 100-186 7-93 (98)
5 2byk_B Chrac-14; nucleosome sl 99.8 1E-20 3.5E-25 155.9 7.0 78 102-179 7-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 2.9E-20 9.8E-25 144.4 6.6 85 101-188 5-90 (93)
7 1b67_A Protein (histone HMFA); 99.6 1.5E-15 5.2E-20 111.2 7.7 65 104-169 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.6 3.4E-15 1.2E-19 112.3 7.8 66 103-169 3-69 (76)
9 1jfi_B DR1 protein, transcript 99.5 7E-15 2.4E-19 127.6 7.5 80 99-179 10-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.5 4.4E-14 1.5E-18 117.0 8.1 77 102-178 23-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.5 6.9E-14 2.3E-18 114.8 7.6 77 102-178 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.5 9.2E-14 3.2E-18 114.9 7.7 77 102-178 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.5 8E-14 2.7E-18 113.9 6.9 77 102-178 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.4 1.2E-13 4.2E-18 114.0 7.4 77 102-178 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.4 2E-13 6.7E-18 115.6 7.6 77 102-178 42-118 (149)
16 2jss_A Chimera of histone H2B. 99.3 5.2E-12 1.8E-16 109.8 7.2 77 102-178 103-180 (192)
17 1ku5_A HPHA, archaeal histon; 99.2 1.8E-11 6.1E-16 90.3 7.5 66 103-169 5-70 (70)
18 1f1e_A Histone fold protein; a 99.2 3.3E-11 1.1E-15 102.4 7.9 70 100-170 78-147 (154)
19 3b0c_T CENP-T, centromere prot 99.1 9.6E-11 3.3E-15 94.3 6.4 77 101-178 4-80 (111)
20 1f1e_A Histone fold protein; a 99.1 2.9E-10 1E-14 96.5 7.8 67 103-170 3-70 (154)
21 1tzy_D Histone H4-VI; histone- 99.0 5E-10 1.7E-14 88.7 8.1 68 103-171 28-95 (103)
22 2yfw_B Histone H4, H4; cell cy 99.0 4.5E-10 1.5E-14 89.0 7.4 67 104-171 29-95 (103)
23 2hue_C Histone H4; mini beta s 99.0 1.6E-09 5.5E-14 82.9 8.0 67 103-170 9-75 (84)
24 1id3_B Histone H4; nucleosome 98.9 2.4E-09 8.1E-14 85.1 7.9 67 103-170 27-93 (102)
25 1taf_B TFIID TBP associated fa 98.5 3.8E-07 1.3E-11 68.4 8.3 66 102-168 4-69 (70)
26 2hue_B Histone H3; mini beta s 98.1 6.8E-06 2.3E-10 62.6 6.7 66 104-169 6-72 (77)
27 1tzy_C Histone H3; histone-fol 97.9 3.9E-05 1.3E-09 64.0 8.2 71 97-168 58-130 (136)
28 3r45_A Histone H3-like centrom 97.8 2.6E-05 8.8E-10 66.5 6.5 78 91-168 64-147 (156)
29 2yfv_A Histone H3-like centrom 97.8 4.2E-05 1.4E-09 60.8 6.7 70 99-168 25-98 (100)
30 1taf_A TFIID TBP associated fa 97.8 6.5E-05 2.2E-09 55.9 7.4 62 108-170 5-66 (68)
31 4dra_A Centromere protein S; D 97.8 2.4E-05 8.1E-10 63.6 5.4 64 110-173 33-98 (113)
32 3nqu_A Histone H3-like centrom 97.8 4.1E-05 1.4E-09 64.2 6.6 77 91-168 48-131 (140)
33 2ly8_A Budding yeast chaperone 97.8 4.4E-05 1.5E-09 62.6 6.7 54 118-171 60-113 (121)
34 3nqj_A Histone H3-like centrom 97.7 7.5E-05 2.6E-09 57.5 7.2 48 121-168 26-73 (82)
35 3ksy_A SOS-1, SON of sevenless 97.7 6E-05 2E-09 78.8 8.8 77 101-178 101-177 (1049)
36 3b0b_B CENP-S, centromere prot 97.7 3.6E-05 1.2E-09 61.8 5.3 64 110-173 25-90 (107)
37 3v9r_A MHF1, uncharacterized p 97.6 0.00015 5.3E-09 56.6 6.7 53 121-173 31-83 (90)
38 2l5a_A Histone H3-like centrom 97.5 6.7E-05 2.3E-09 67.6 4.8 94 76-170 97-226 (235)
39 3vh5_A CENP-S; histone fold, c 97.5 0.00014 4.9E-09 61.0 5.6 59 121-179 38-97 (140)
40 4dra_E Centromere protein X; D 97.4 0.00057 1.9E-08 52.9 8.4 68 102-169 10-79 (84)
41 3b0b_C CENP-X, centromere prot 97.4 0.00057 1.9E-08 52.4 7.8 68 102-169 6-75 (81)
42 1bh9_B TAFII28; histone fold, 97.3 0.00039 1.3E-08 54.0 5.9 71 99-170 11-82 (89)
43 1tzy_B Histone H2B; histone-fo 97.2 0.00067 2.3E-08 56.0 6.8 60 109-169 41-101 (126)
44 2nqb_D Histone H2B; nucleosome 97.1 0.001 3.6E-08 54.7 6.9 61 108-169 37-98 (123)
45 2jss_A Chimera of histone H2B. 97.0 0.0015 5E-08 56.6 6.8 60 109-169 8-68 (192)
46 2l5a_A Histone H3-like centrom 96.2 0.0076 2.6E-07 54.3 6.6 71 102-172 12-86 (235)
47 1h3o_B Transcription initiatio 95.5 0.037 1.3E-06 41.9 6.7 67 103-170 4-71 (76)
48 3v9r_B MHF2, uncharacterized p 94.9 0.073 2.5E-06 41.5 6.9 62 105-166 2-72 (88)
49 3vlf_B 26S protease regulatory 77.4 1.2 4E-05 33.0 2.2 43 128-170 25-71 (88)
50 2ly8_A Budding yeast chaperone 76.7 2.4 8.2E-05 34.5 4.0 75 103-182 3-87 (121)
51 3kw6_A 26S protease regulatory 72.2 4.6 0.00016 28.7 4.2 42 128-169 27-72 (78)
52 1wwi_A Hypothetical protein TT 69.4 6.4 0.00022 33.2 5.0 59 104-163 2-60 (148)
53 2v1u_A Cell division control p 67.1 14 0.00049 31.8 7.0 64 107-170 203-276 (387)
54 2dzn_B 26S protease regulatory 66.9 7.3 0.00025 28.1 4.4 32 139-170 37-68 (82)
55 2krk_A 26S protease regulatory 64.6 7.9 0.00027 28.6 4.2 41 130-170 37-81 (86)
56 3k1j_A LON protease, ATP-depen 64.0 13 0.00046 35.9 6.8 50 121-170 313-375 (604)
57 1g8p_A Magnesium-chelatase 38 63.6 21 0.00071 30.7 7.4 48 122-169 267-321 (350)
58 3uk6_A RUVB-like 2; hexameric 63.3 19 0.00065 31.4 7.1 64 106-169 260-329 (368)
59 3aji_B S6C, proteasome (prosom 60.7 7.5 0.00025 27.8 3.4 32 139-170 40-71 (83)
60 4b4t_K 26S protease regulatory 60.6 5.2 0.00018 38.1 3.2 42 128-169 368-413 (428)
61 1h3o_A Transcription initiatio 59.1 13 0.00043 28.0 4.4 43 108-151 10-52 (75)
62 2qby_A CDC6 homolog 1, cell di 53.5 27 0.00091 29.9 6.3 65 107-171 199-273 (386)
63 1r4v_A Hypothetical protein AQ 51.5 8.1 0.00028 33.3 2.6 59 104-163 26-84 (171)
64 4b4t_I 26S protease regulatory 47.8 11 0.00036 36.5 3.1 42 128-169 377-422 (437)
65 1fnn_A CDC6P, cell division co 41.7 62 0.0021 27.9 6.8 64 107-170 195-274 (389)
66 1ixz_A ATP-dependent metallopr 41.3 31 0.0011 28.6 4.6 45 123-167 204-253 (254)
67 3h4m_A Proteasome-activating n 40.3 30 0.001 29.0 4.4 43 128-170 212-258 (285)
68 2c9o_A RUVB-like 1; hexameric 38.5 61 0.0021 30.0 6.6 65 106-170 367-437 (456)
69 1iy2_A ATP-dependent metallopr 37.7 38 0.0013 28.7 4.7 46 123-168 228-278 (278)
70 1lv7_A FTSH; alpha/beta domain 37.7 35 0.0012 28.3 4.4 42 128-169 206-251 (257)
71 2qby_B CDC6 homolog 3, cell di 36.2 91 0.0031 26.9 7.0 48 122-171 218-271 (384)
72 4b4t_J 26S protease regulatory 31.7 42 0.0015 31.8 4.4 42 128-169 343-388 (405)
73 1w5s_A Origin recognition comp 30.9 78 0.0027 27.6 5.7 50 122-171 236-294 (412)
74 3bos_A Putative DNA replicatio 30.3 1.1E+02 0.0038 24.0 6.1 46 122-168 193-241 (242)
75 4b4t_L 26S protease subunit RP 28.7 52 0.0018 31.3 4.4 42 128-169 376-421 (437)
76 4b4t_M 26S protease regulatory 28.3 49 0.0017 31.5 4.2 43 128-170 376-422 (434)
77 4b4t_H 26S protease regulatory 28.1 47 0.0016 32.3 4.0 42 128-169 404-449 (467)
78 1ldd_A APC2WHB, anaphase promo 24.5 99 0.0034 22.8 4.4 52 81-144 4-59 (74)
79 1bh9_A TAFII18; histone fold, 24.3 1.1E+02 0.0038 20.4 4.2 40 109-148 5-44 (45)
80 2r44_A Uncharacterized protein 22.5 2.6E+02 0.009 23.8 7.5 29 141-169 268-296 (331)
81 1k6k_A ATP-dependent CLP prote 22.2 77 0.0026 24.1 3.6 32 140-171 85-116 (143)
82 3cuq_A Vacuolar-sorting protei 20.7 1.5E+02 0.005 26.3 5.5 24 78-101 18-41 (234)
83 1tm9_A GI3844938, hypothetical 20.4 39 0.0013 27.3 1.5 40 78-117 5-54 (137)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=100.00 E-value=1.8e-36 Score=246.73 Aligned_cols=115 Identities=53% Similarity=0.979 Sum_probs=109.5
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHH
Q 024740 68 YQQIHHQQQQQLQQQLQSFWANQYQEIEKV-NDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRS 146 (263)
Q Consensus 68 ~q~~~~~~~~~~~q~L~~FW~~~~~eiE~~-~d~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A 146 (263)
|++..+.+..++++.|.+||.++++++|+. .|||++.||+||||||||.|+++++||+||++++++|||+||.+|+.+|
T Consensus 4 ~~~~~~~l~~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A 83 (119)
T 4g92_C 4 WANVNQGLQGTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRA 83 (119)
T ss_dssp THHHHTTCCTHHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788889999999999999999974 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHhcCCccchhhhcCCC
Q 024740 147 WNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 182 (263)
Q Consensus 147 ~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~DIVP~ 182 (263)
+++|+.+|||||+++||+.||++++.||||.|+||+
T Consensus 84 ~~~a~~~krktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 84 WIHAEDNKRRTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HHHHHHTTCSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred HHHHHhcccCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 999999999999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=6.2e-30 Score=201.16 Aligned_cols=94 Identities=70% Similarity=1.081 Sum_probs=77.3
Q ss_pred HHHHHHHh--hccCCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 024740 89 NQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA 166 (263)
Q Consensus 89 ~~~~eiE~--~~d~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~A 166 (263)
++++|+++ ..|++.+.||+||||||||.|+++++||+||++++++|||+||.+|+.+||++|+.+|||||+++||..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 46778877 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccchhhhcCCC
Q 024740 167 ITRTDIFDFLVDIVPR 182 (263)
Q Consensus 167 I~~~d~FDFL~DIVP~ 182 (263)
|.+++.|+||.|+||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.94 E-value=1.3e-27 Score=200.02 Aligned_cols=93 Identities=20% Similarity=0.419 Sum_probs=70.5
Q ss_pred cCCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcccHHHHHHHHhcCCccchhh
Q 024740 99 DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHT-EENKRRTLQKNDIAAAITRTDIFDFLV 177 (263)
Q Consensus 99 d~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A-~~~KRKTLq~~DIa~AI~~~d~FDFL~ 177 (263)
..+.+.||++|||||||.|+++++||++|+++|++|||+||.+||.+||.+| +.+|||||+++||+.||.+.+.|+||.
T Consensus 14 ~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ---------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred cccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 4567899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hcCCCccchhHHhh
Q 024740 178 DIVPREDLKDEVLA 191 (263)
Q Consensus 178 DIVP~~~~~~e~l~ 191 (263)
||||+++...+.++
T Consensus 94 divP~ki~l~~~~~ 107 (140)
T 2byk_A 94 QIVPQKIRVHQFQE 107 (140)
T ss_dssp TTSCSCC-------
T ss_pred ccccchhhHHHHHH
Confidence 99999987766554
No 4
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=1.7e-27 Score=187.94 Aligned_cols=87 Identities=28% Similarity=0.330 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhhc
Q 024740 100 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 179 (263)
Q Consensus 100 ~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~DI 179 (263)
-..+.||++|||||||.|+++++||+||++++++|||+|+.+|+.+||++|+.+|||||+++||..||.+++.||||.||
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccch
Q 024740 180 VPREDLK 186 (263)
Q Consensus 180 VP~~~~~ 186 (263)
+|+++..
T Consensus 87 vp~k~~~ 93 (98)
T 1jfi_A 87 KEAELAA 93 (98)
T ss_dssp -------
T ss_pred CchHhhh
Confidence 9998754
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.82 E-value=1e-20 Score=155.93 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=71.8
Q ss_pred CCCCChHHHHHHHh-cCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhhc
Q 024740 102 NHSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 179 (263)
Q Consensus 102 ~~~LPLARIKKIMK-~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~DI 179 (263)
++.||+|||+|||| .+|++.+||+||+++|++|||+||.+||.+|+.+|+..+||||+++||..||.+.+.++||..+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 47899999999999 6899999999999999999999999999999999999999999999999999999999999854
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=2.9e-20 Score=144.41 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCCCChHHHHHHHhcC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhhc
Q 024740 101 KNHSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 179 (263)
Q Consensus 101 k~~~LPLARIKKIMK~D-pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~DI 179 (263)
.++.||++||+||||.+ +++.+||+||..++++|||+||.+|+..|+.+|+.+|||||+++||..|++ .++|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 35789999999999999 899999999999999999999999999999999999999999999999998 68899888
Q ss_pred CCCccchhH
Q 024740 180 VPREDLKDE 188 (263)
Q Consensus 180 VP~~~~~~e 188 (263)
.|.+...++
T Consensus 82 ~~~~~~l~~ 90 (93)
T 1n1j_A 82 EPLKLYLQK 90 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877655433
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.60 E-value=1.5e-15 Score=111.21 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=62.5
Q ss_pred CCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 104 ~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.||+++|+||||.+ +..+||+||..++++|+|.|+.+|+..|+.+|..+|||||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 59999999999999 778999999999999999999999999999999999999999999999875
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.58 E-value=3.4e-15 Score=112.33 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHh-cCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 103 HSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 103 ~~LPLARIKKIMK-~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
..||+|+|+|||| ..|+ ..||+||..++.++||+||++|+.+|.+.|+.++||||+++||..|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5799999999999 6787 4899999999999999999999999999999999999999999999875
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.54 E-value=7e-15 Score=127.63 Aligned_cols=80 Identities=14% Similarity=0.312 Sum_probs=72.3
Q ss_pred cCCCCCCChHHHHHHHhcC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhh
Q 024740 99 DFKNHSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 177 (263)
Q Consensus 99 d~k~~~LPLARIKKIMK~D-pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~ 177 (263)
...++.||+|+|+||||.. | ..+||+||..+|++||++||.+||..|+++|+..+||||+++||..|+.+.+..+|+.
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH
Confidence 3445789999999999986 5 6799999999999999999999999999999999999999999999999988888877
Q ss_pred hc
Q 024740 178 DI 179 (263)
Q Consensus 178 DI 179 (263)
.+
T Consensus 89 ~l 90 (179)
T 1jfi_B 89 EV 90 (179)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.49 E-value=4.4e-14 Score=117.04 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+||||.+....+|+++|+++|+.++|+|+.+++..|++.|+.++|++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 47899999999999998889999999999999999999999999999999999999999999999999999999984
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.47 E-value=6.9e-14 Score=114.75 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+||||.+....+|+.+|++.|+.++|+|+.++...|++.|+.++|++|+++||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 47899999999999998888999999999999999999999999999999999999999999999999999999884
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.46 E-value=9.2e-14 Score=114.88 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+||||.+....+|+.+|+++|+.++|+|+.++...|++.|+.++|++|+++||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 47899999999999998889999999999999999999999999999999999999999999999999999999984
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.46 E-value=8e-14 Score=113.94 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=74.0
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+|+||.+....+|+.+|++.++.++|+|+.++...|.+.|+.+||++|++.||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 37899999999999988788999999999999999999999999999999999999999999999999999999984
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.45 E-value=1.2e-13 Score=114.02 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCCChHHHHHHHhcCcch-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDV-RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV-~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+|+||.+... .+|+++|+++|+.++|+|+.++...|.+.|+.+||++|+++||..||.++++|++|.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 3789999999999998765 4999999999999999999999999999999999999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.43 E-value=2e-13 Score=115.61 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+|+||.+....+|+.+|+++|+.++|+|+.++.+.|++.|+.+||++|+++||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 37899999999999998889999999999999999999999999999999999999999999999999999999884
No 16
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.27 E-value=5.2e-12 Score=109.78 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCCChHHHHHHHhcCcch-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 102 NHSLPLARIKKIMKADEDV-RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV-~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
.+.||++||+|+||.+... .+|+.+|++.++.++|+|+.++.+.|.+.|+.+||++|++.||..||.++++|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 5899999999999998665 5999999999999999999999999999999999999999999999999999999986
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.24 E-value=1.8e-11 Score=90.34 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 103 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 103 ~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
..||.++|+||+|.. ++.+||.+|...+.+++|.|+.+++..|...|+..|||||+.+||..|++.
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 469999999999986 678999999999999999999999999999999999999999999999863
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.19 E-value=3.3e-11 Score=102.36 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=65.9
Q ss_pred CCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 100 FKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 100 ~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
--++.||+++|.||||.. ++.+||.+|...++.++|.|+.+++..|.+.|+..|||||+..||..|+++.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 345789999999999998 7789999999999999999999999999999999999999999999999864
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.10 E-value=9.6e-11 Score=94.33 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 101 KNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 101 k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
++..||.+-|+||||.. .+++||.++...+..+++.|++.++..|...|+..|||||+.+||..|+++...++|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 45679999999999987 678999999999999999999999999999999999999999999999999876665444
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.06 E-value=2.9e-10 Score=96.54 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=63.1
Q ss_pred CCCChHHHHHHHhcC-cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 103 HSLPLARIKKIMKAD-EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 103 ~~LPLARIKKIMK~D-pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..||.+.|+||||.. ++ .+||.||...+++++|.|+.+++..|.+.|+..|||||+..||..|+...
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 369999999999998 76 89999999999999999999999999999999999999999999999663
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.04 E-value=5e-10 Score=88.67 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 103 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 103 ~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
..||.++|+||+|.. .+.+||.+|...++.++|.|+++++..|...|+..|||||+.+||..|+++..
T Consensus 28 ~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 28 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 349999999999987 56899999999999999999999999999999999999999999999999864
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.03 E-value=4.5e-10 Score=89.04 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 104 ~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
.||.++|+||+|.. .+.+||.+|...++.++|.|+++++..|...|+..|||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 39999999999987 56899999999999999999999999999999999999999999999999764
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.97 E-value=1.6e-09 Score=82.89 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 103 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 103 ~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..||.+.|+||+|.. .+.+||.++...+..++|.|+++++..|...|+..|||||+..||..|++..
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 569999999999987 6789999999999999999999999999999999999999999999999876
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.93 E-value=2.4e-09 Score=85.06 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 103 HSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 103 ~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..||.+.|+||+|.. .+.+||.|+...+..++|.|+++++.+|...|+..+||||+.+||..|++..
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 459999999999997 6789999999999999999999999999999999999999999999999876
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.52 E-value=3.8e-07 Score=68.38 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 102 NHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 102 ~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
...||++-||+|.++- ++..+|.||...|+.-+|+-+.+++.+|.+.++..|||||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3579999999999986 66799999999999999999999999999999999999999999999975
No 26
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.09 E-value=6.8e-06 Score=62.62 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCChHH-HHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 104 SLPLAR-IKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 104 ~LPLAR-IKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.+|..| ||+|.+.-..--+++.+|..++..|+|.|+..|.+.+..+|...||+||+.+||.-|..-
T Consensus 6 k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 6 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 345555 345544322225899999999999999999999999999999999999999999988653
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.88 E-value=3.9e-05 Score=64.02 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=56.1
Q ss_pred hccCCCCCCChHH-HHHHHhc-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 97 VNDFKNHSLPLAR-IKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 97 ~~d~k~~~LPLAR-IKKIMK~-DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
..++--..+|..| ||.|... ..| -+++.+|..+|..|+|.|+..|.+.+..+|...||.||..+||.-|..
T Consensus 58 st~lLIpk~PF~RLVREI~~~~~~~-~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 58 STELLIRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhhccchHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 3444444555555 3445432 133 489999999999999999999999999999999999999999998864
No 28
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.84 E-value=2.6e-05 Score=66.54 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHhhccCCCCCCChHHHHHHHhcCc------chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Q 024740 91 YQEIEKVNDFKNHSLPLARIKKIMKADE------DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 164 (263)
Q Consensus 91 ~~eiE~~~d~k~~~LPLARIKKIMK~Dp------dV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa 164 (263)
+.||..-....++.||.+-+.||+|.-. .--+++.+|+.+|..|+|.|+..|.+.|..+|...||+||..+||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 5556543334444555555555554311 1238999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 024740 165 AAIT 168 (263)
Q Consensus 165 ~AI~ 168 (263)
-|..
T Consensus 144 LArr 147 (156)
T 3r45_A 144 LARR 147 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 29
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.80 E-value=4.2e-05 Score=60.80 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=52.8
Q ss_pred cCCCCCCChHH-HHHHHhcCc---chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 99 DFKNHSLPLAR-IKKIMKADE---DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 99 d~k~~~LPLAR-IKKIMK~Dp---dV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
++--..+|..| ||.|...-. +.-+++.+|..+|..|+|.|+..|.+.|..+|...||.||..+||.-|..
T Consensus 25 ~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 25 DLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 33334455555 344443311 13589999999999999999999999999999999999999999998853
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.80 E-value=6.5e-05 Score=55.89 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=57.0
Q ss_pred HHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 108 ARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 108 ARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..|.+|+|.- ++..++.+++..|...++.++.+++..|...|+..+|+||+.+||..||+..
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3588899984 6789999999999999999999999999999999999999999999999863
No 31
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.80 E-value=2.4e-05 Score=63.62 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHhcCc--chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc
Q 024740 110 IKKIMKADE--DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 173 (263)
Q Consensus 110 IKKIMK~Dp--dV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~F 173 (263)
|-||+|... .-..||.++...|+..++.|+..|+..+...|+-.|||||+.+||..++.+++.+
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 556666431 1135999999999999999999999999999999999999999999999998764
No 32
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.77 E-value=4.1e-05 Score=64.24 Aligned_cols=77 Identities=26% Similarity=0.301 Sum_probs=55.0
Q ss_pred HHHHHh---hccCCCCCCChHHH-HHHHhc---CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024740 91 YQEIEK---VNDFKNHSLPLARI-KKIMKA---DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 163 (263)
Q Consensus 91 ~~eiE~---~~d~k~~~LPLARI-KKIMK~---DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DI 163 (263)
+.||.. ..++--..+|..|+ |+|... +.+ -.++.+|+.+|..|+|.|+..|.+.|..+|...||.||..+||
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~-~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDi 126 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 126 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccccc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 445543 44554455666664 444432 112 4899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 024740 164 AAAIT 168 (263)
Q Consensus 164 a~AI~ 168 (263)
.-|..
T Consensus 127 qLArr 131 (140)
T 3nqu_A 127 QLARR 131 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=4.4e-05 Score=62.59 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=51.5
Q ss_pred cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 118 EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 118 pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
.++++||.++-..+..++|.|++.++..|...|+..|||||+..||..|+++..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999998764
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.75 E-value=7.5e-05 Score=57.50 Aligned_cols=48 Identities=25% Similarity=0.203 Sum_probs=45.4
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 121 RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 121 ~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
-+++.+|..++..|+|.|+..|.+.|..+|...||+||..+||.-|..
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 389999999999999999999999999999999999999999988753
No 35
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.75 E-value=6e-05 Score=78.83 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=69.0
Q ss_pred CCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCccchhhh
Q 024740 101 KNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 178 (263)
Q Consensus 101 k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~FDFL~D 178 (263)
..+.||++||.|.+|. --..+|++.|++.++..+|++..++..-|.+.|+..+++.|++.||..||.+++.++-|.+
T Consensus 101 ~~l~~pv~~~~~~l~~-~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~ 177 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKE-VLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFH 177 (1049)
T ss_dssp SSCSSCHHHHHHHHHH-HHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC
T ss_pred CCccccHHHHHHHhhc-ccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHHh
Confidence 3578999999999943 3446999999999999999999999999999999999999999999999999998766653
No 36
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.72 E-value=3.6e-05 Score=61.82 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=54.6
Q ss_pred HHHHHhcCcc--hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc
Q 024740 110 IKKIMKADED--VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 173 (263)
Q Consensus 110 IKKIMK~Dpd--V~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~F 173 (263)
|.||++.... -..+|.+++..|+..++.|+..|+..+...|+..|||||+.+||..|+++++.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 5555554211 137999999999999999999999999999999999999999999999998653
No 37
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00015 Score=56.56 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=50.4
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc
Q 024740 121 RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 173 (263)
Q Consensus 121 ~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~F 173 (263)
..||.++...|+..++.++..|+..+...|+..|||||+.+||..++++++.+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 36999999999999999999999999999999999999999999999998765
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=6.7e-05 Score=67.59 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC------------------CC--CChH----HHH------------HHHhcCcc
Q 024740 76 QQQLQQQLQSFWANQYQEIEKVNDFKN------------------HS--LPLA----RIK------------KIMKADED 119 (263)
Q Consensus 76 ~~~~~q~L~~FW~~~~~eiE~~~d~k~------------------~~--LPLA----RIK------------KIMK~Dpd 119 (263)
.....+.|++-|.+.+++-++..|..+ .. =... |-+ ||.+. -.
T Consensus 97 ~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~RlaRr-gG 175 (235)
T 2l5a_A 97 HKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDK-GG 175 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCCTTSCC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHHHHhhc-CC
Confidence 346678899999999988766322110 10 0111 222 33333 37
Q ss_pred hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 120 VRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 120 V~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
|++||.++...+..++|.|++.++..|...|+..+||||+..||..|+++.
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999864
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.46 E-value=0.00014 Score=60.97 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=53.0
Q ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCcc-chhhhc
Q 024740 121 RMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF-DFLVDI 179 (263)
Q Consensus 121 ~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~F-DFL~DI 179 (263)
..||.++...|+.+++.|+..|+..+...|+..||+||+.+||..++.+++.+ ++|.+.
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~ 97 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999765 444433
No 40
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.45 E-value=0.00057 Score=52.87 Aligned_cols=68 Identities=9% Similarity=0.283 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHhcC--cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 102 NHSLPLARIKKIMKAD--EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 102 ~~~LPLARIKKIMK~D--pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...||-.-|.||++.. .+-.+||.||..++++-+++|+.+-+.||...|+..+...|...||.+.+-.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 4679999999999974 4668999999999999999999999999999999888889999999987543
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.40 E-value=0.00057 Score=52.41 Aligned_cols=68 Identities=7% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHhc--CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 102 NHSLPLARIKKIMKA--DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 102 ~~~LPLARIKKIMK~--DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
+..||..-|.||++. ..+-.+|++||..++++-+++|+.+-..||...|+..+...|...||.+..-.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 567999999999997 34567999999999999999999999999999999888999999999996543
No 42
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.30 E-value=0.00039 Score=54.02 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=61.0
Q ss_pred cCCCCCCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccHHHHHHHHhcC
Q 024740 99 DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEEN-KRRTLQKNDIAAAITRT 170 (263)
Q Consensus 99 d~k~~~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~-KRKTLq~~DIa~AI~~~ 170 (263)
.|+...|+-+.|||||..--+ ..|+.+...+++-.+.+||.+|+..|.++.++. .+.-|+++||..|..+.
T Consensus 11 ~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 11 MYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 456678999999999986544 478899999999999999999999999998765 46699999999998753
No 43
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.22 E-value=0.00067 Score=56.05 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=54.0
Q ss_pred HHHHHHhc-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 109 RIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 109 RIKKIMK~-DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
=|.||+|. .||. .||.+|.-++.--.+-+.+.|+.+|...+..+||+||+.+||..||.-
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 48888884 6775 599999999999999999999999999999999999999999999863
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.11 E-value=0.001 Score=54.70 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHHhc-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 108 ARIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 108 ARIKKIMK~-DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.=|.||+|. .||. .||.+|.-++.--.+-+.+.|+.+|...+..+||+||+.+||..||.-
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 347888884 6774 689999999999999999999999999999999999999999999864
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.96 E-value=0.0015 Score=56.62 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=54.8
Q ss_pred HHHHHHhc-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 109 RIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 109 RIKKIMK~-DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
-|+|++|. .||. .||.+|..++..-+.-+++.|+.+|...+..+||+||+..||..||.-
T Consensus 8 yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 58899985 5775 599999999999999999999999999999999999999999999873
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0076 Score=54.31 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCCChHH-HHHHHhcCc---chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCc
Q 024740 102 NHSLPLAR-IKKIMKADE---DVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 172 (263)
Q Consensus 102 ~~~LPLAR-IKKIMK~Dp---dV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d~ 172 (263)
-..||..| |+.|.+.-. +--++.++|+.+|..|+|.|+-.|-..+..+|-..||-||..+||.-|-.-...
T Consensus 12 I~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 12 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp CSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred ccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 35789988 577777532 135899999999999999999999999999999999999999999999665543
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.52 E-value=0.037 Score=41.90 Aligned_cols=67 Identities=13% Similarity=0.298 Sum_probs=58.3
Q ss_pred CCCChHHHHHHHhc-CcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 103 HSLPLARIKKIMKA-DEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 103 ~~LPLARIKKIMK~-DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..|.-.++..++|. |+. ..+..++-.++.+.++.||...+..|...|+.+|..||..+||.-.++++
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34666778888875 554 58889999999999999999999999999999999999999999888764
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.073 Score=41.52 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=47.1
Q ss_pred CChHHHHHHHhcC--cchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcccHHHHHHH
Q 024740 105 LPLARIKKIMKAD--EDVRMISAEAPVIFARACEMFILELTLRSWNHTEENK-------RRTLQKNDIAAA 166 (263)
Q Consensus 105 LPLARIKKIMK~D--pdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~K-------RKTLq~~DIa~A 166 (263)
+|..-|-||++.. .+-.+|++||..+++|=.++|+.+-..||....+..+ ...|+-.|+.+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEki 72 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERI 72 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHH
Confidence 6777788888863 5667999999999999999999999999987765422 246666776654
No 49
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=77.43 E-value=1.2 Score=33.05 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
...|++.|+-| |..|+.+|...|-+.++..|+.+|+..|+.+.
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 34555666656 67788888888888888999999999999763
No 50
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=76.75 E-value=2.4 Score=34.50 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCChHH-HHHHHhc-Cc--chhccCccHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccc---HHHHHHHHhcCCc
Q 024740 103 HSLPLAR-IKKIMKA-DE--DVRMISAEAPVIFARACEMFILELTLRSWNHTEE---NKRRTLQ---KNDIAAAITRTDI 172 (263)
Q Consensus 103 ~~LPLAR-IKKIMK~-Dp--dV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~---~KRKTLq---~~DIa~AI~~~d~ 172 (263)
.++|..| ||.|.+. .. +.-+..++|..++..|+|.|+-.|-..+..+|-. ++-|.|+ |+.+..+++
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~---- 78 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLK---- 78 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHH----
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHH----
Confidence 3578888 4557653 11 2348999999999999999999999999887754 4446665 334444433
Q ss_pred cchhhhcCCC
Q 024740 173 FDFLVDIVPR 182 (263)
Q Consensus 173 FDFL~DIVP~ 182 (263)
+||.+|+-.
T Consensus 79 -~~l~~i~rd 87 (121)
T 2ly8_A 79 -SFLESVIRD 87 (121)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 577776654
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.16 E-value=4.6 Score=28.66 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...|++.||-| |..|+.+|...|-.++++.|+..|+..|+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44556666655 7778888888888889999999999999876
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=69.42 E-value=6.4 Score=33.18 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024740 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 163 (263)
Q Consensus 104 ~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DI 163 (263)
.+++++++|+++..-+....-.+ .--+....+-=+.+|...|...|+.|+|..|...||
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d-~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKND-LKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36789999999986655444444 444555566667889999999999999999998874
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.10 E-value=14 Score=31.76 Aligned_cols=64 Identities=9% Similarity=0.184 Sum_probs=49.8
Q ss_pred hHHHHHHHhcCc----chhccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 107 LARIKKIMKADE----DVRMISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 107 LARIKKIMK~Dp----dV~~ISaEApvllAKA~E------lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..-+++|++.-- .-..++.++...+++.+. ..+..++.+++..|...++.+|+.+||..|+...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 455666665321 124688899988888887 5777899999999988889999999999998765
No 54
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=66.91 E-value=7.3 Score=28.08 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 139 ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 139 I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
|..|+.+|...|-+++++.|+..|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44566677777777888999999999999874
No 55
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=64.57 E-value=7.9 Score=28.60 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=30.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 130 IFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 130 llAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
.|++.|+-| |..|+.+|...|-+..++.|+..|+..|+.+.
T Consensus 37 ~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 37 KIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444 55677778777878888999999999998763
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=63.98 E-value=13 Score=35.91 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=39.0
Q ss_pred hccCccHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 121 RMISAEAPVIFARAC-------------EMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 121 ~~ISaEApvllAKA~-------------ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..++.+|...|.+.+ ..-+..|...|...|+.+++..|+.+||..|+...
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 357777777666643 34566788888888988999999999999999764
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.65 E-value=21 Score=30.71 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=36.7
Q ss_pred ccCccHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 122 MISAEAPVIFARACEM-------FILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 122 ~ISaEApvllAKA~El-------FI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.++.++...+.+.+.- -+..+...|...|..++|.+|+..||..|+..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 6777777777666542 34567777788888889999999999998765
No 58
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.27 E-value=19 Score=31.38 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred ChHHHHHHHhcC--cchhccCccHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 106 PLARIKKIMKAD--EDVRMISAEAPVIFARACE----MFILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 106 PLARIKKIMK~D--pdV~~ISaEApvllAKA~E----lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...-+++|++.- ..-..++.++...+++.+. ..+..|+.+|...|..++++.|+.+||..|+..
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 445566666621 1113578888888888876 356678888888888899999999999999986
No 59
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=60.71 E-value=7.5 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 139 ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 139 I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
|..|+.+|...|-++.+..|+..|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 55677778788878888999999999998764
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.60 E-value=5.2 Score=38.11 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.-.+++.|+-| |..|+.+|...|-+++|..|+..|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 45666766655 7788999998898899999999999999864
No 61
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=59.11 E-value=13 Score=28.00 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024740 108 ARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTE 151 (263)
Q Consensus 108 ARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~ 151 (263)
.||..||+. -+++.++.|+..+++-|||.=+..|...-...|+
T Consensus 10 kri~~I~~k-~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 10 RRILEIGKK-HGITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHHT-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh-cCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 688889977 5888999999999999999988877776665553
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.48 E-value=27 Score=29.95 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=47.0
Q ss_pred hHHHHHHHhcCc--c--hhccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 107 LARIKKIMKADE--D--VRMISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 107 LARIKKIMK~Dp--d--V~~ISaEApvllAKA~E------lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
..-++.|++.-- . ...++.++...+.+.+. ..+..++.+++..+...++.+|+.+||..|+.+..
T Consensus 199 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 445666665311 1 13577788887877776 34667888999999888889999999999987764
No 63
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=51.49 E-value=8.1 Score=33.26 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCChHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 024740 104 SLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDI 163 (263)
Q Consensus 104 ~LPLARIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~~A~~~KRKTLq~~DI 163 (263)
.+++++++|+++..-++... ++-.--+...++-=+-+|...|...|+.|+|..|...||
T Consensus 26 vmg~~kferlFR~aagLDvd-K~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELDIDLT-DETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 68999999999986555444 444455555666667889999999999999999998874
No 64
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.78 E-value=11 Score=36.47 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...|++.|+-| |..|+.+|...|-+++|..|+..|+..|+.+
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566666644 6788899999998899999999999999875
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.68 E-value=62 Score=27.89 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=46.6
Q ss_pred hHHHHHHHhcCcc----hhccCccHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 107 LARIKKIMKADED----VRMISAEAPVIFARAC------------EMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 107 LARIKKIMK~Dpd----V~~ISaEApvllAKA~------------ElFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
..-++.|++.--. -..++.++...+.+.+ =.++..++.+|+..|..+++.+|+.+||..++...
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 3556666543211 1357888888888777 24567888999999988888999999999988764
No 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=41.31 E-value=31 Score=28.59 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.2
Q ss_pred cCccH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 024740 123 ISAEA-PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAI 167 (263)
Q Consensus 123 ISaEA-pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI 167 (263)
++.++ ...+++.++=| |..++.+|...|...++++|+.+|+..|+
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34333 55666666543 45677788888878888899999999886
No 67
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=40.31 E-value=30 Score=29.00 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 128 PVIFARACEM----FILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 128 pvllAKA~El----FI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
...+++.++- -|..|+.+|...|..+++++|+.+||..|+.+.
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 4444444443 366788889888888999999999999998764
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=38.47 E-value=61 Score=29.95 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=46.5
Q ss_pred ChHHHHHHHhcC--cchhccCccHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 106 PLARIKKIMKAD--EDVRMISAEAPVIFARAC-E---MFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 106 PLARIKKIMK~D--pdV~~ISaEApvllAKA~-E---lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
...-|++|++.- .+...++.++..++++.+ + .....|...|...|..+++.+|+.+||..|+.-.
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 345566666532 122357888888887776 3 3456777888888888999999999999997653
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=37.71 E-value=38 Score=28.66 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=31.7
Q ss_pred cCccH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 123 ISAEA-PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 123 ISaEA-pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
++.++ ...+++.++=| |..++.+|...|...+++.|+.+||..|++
T Consensus 228 ~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 228 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 34433 45566555543 445777788888778888999999998863
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=37.70 E-value=35 Score=28.32 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEM----FILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~El----FI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
..++++.++- =|..++.+|...|..++++.|+.+|+..|+..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3445554443 35667788888888888999999999999875
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.20 E-value=91 Score=26.92 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.6
Q ss_pred ccCccHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 122 MISAEAPVIFARACE------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 122 ~ISaEApvllAKA~E------lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
.++.++...+++.+. ..+..++.+|+..|. ++++|+.+||..++.+..
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 577888888887776 235577788888776 667899999999987653
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.73 E-value=42 Score=31.81 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...+++.|+-| |..|+.+|...|-+++|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 45566666544 6788899998898899999999999999875
No 73
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=30.95 E-value=78 Score=27.58 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=40.4
Q ss_pred ccCccHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 122 MISAEAPVIFARACE---------MFILELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 122 ~ISaEApvllAKA~E---------lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
.++.++...+.+.|. .++..|+..++..+...++.+|+..|+..++....
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 467777878888877 47888888898888888888999999998887653
No 74
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=30.26 E-value=1.1e+02 Score=24.02 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=27.8
Q ss_pred ccCccHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHh
Q 024740 122 MISAEAPVIFARACE---MFILELTLRSWNHTEENKRRTLQKNDIAAAIT 168 (263)
Q Consensus 122 ~ISaEApvllAKA~E---lFI~eLt~~A~~~A~~~KRKTLq~~DIa~AI~ 168 (263)
.++.++...+.+.++ --+..+..++...+..++ ++|+..||..++.
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 356666666666554 123344455555554444 4699999998875
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.66 E-value=52 Score=31.34 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.-.+++.|+-| |..|+.+|...|-+++|..|+.+|+..|+.+
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34455555533 6778888888888889999999999999875
No 76
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.32 E-value=49 Score=31.46 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhcC
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITRT 170 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~ 170 (263)
.-.|++.|+-| |..|+.+|...|-+++++.|+.+|+..|+.+.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34556666544 67788888888888899999999999999764
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.12 E-value=47 Score=32.25 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 128 PVIFARACEMF----ILELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 128 pvllAKA~ElF----I~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
...|++.|+-| |..|+.+|...|-+.+|+.|+..|+..|+.+
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566766654 6788999998898889999999999999875
No 78
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=24.50 E-value=99 Score=22.84 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhc----CcchhccCccHHHHHHHHHHHHHHHHHH
Q 024740 81 QQLQSFWANQYQEIEKVNDFKNHSLPLARIKKIMKA----DEDVRMISAEAPVIFARACEMFILELTL 144 (263)
Q Consensus 81 q~L~~FW~~~~~eiE~~~d~k~~~LPLARIKKIMK~----DpdV~~ISaEApvllAKA~ElFI~eLt~ 144 (263)
+.++-||.-...=+ .++ -.||+.||..++|. |+....|+-+ =++.|+..+.+
T Consensus 4 e~~~v~w~yI~GML---tN~--~slpl~RIh~mLkmf~~~~~~~~~it~~-------eL~~fL~~~v~ 59 (74)
T 1ldd_A 4 LTLQRSLPFIEGML---TNL--GAMKLHKIHSFLKITVPKDWGYNRITLQ-------QLEGYLNTLAD 59 (74)
T ss_dssp HHHHHHHHHHHHHH---HHH--CSEEHHHHHHHHHHHSCGGGCCTTCCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hcC--CCCCHHHHHHHHHHhCCCCCCCCcCCHH-------HHHHHHHHHHh
Confidence 56889999864322 333 46999999999996 2233444443 24556665554
No 79
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=24.28 E-value=1.1e+02 Score=20.41 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHH
Q 024740 109 RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWN 148 (263)
Q Consensus 109 RIKKIMK~DpdV~~ISaEApvllAKA~ElFI~eLt~~A~~ 148 (263)
-|+.+|=.-.|...-..|+..++-...-.||.+|+.+|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677777777777888899999999999999999998865
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.54 E-value=2.6e+02 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHhc
Q 024740 141 ELTLRSWNHTEENKRRTLQKNDIAAAITR 169 (263)
Q Consensus 141 eLt~~A~~~A~~~KRKTLq~~DIa~AI~~ 169 (263)
.|...|...|.-++|..|+.+||..++..
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35555666677789999999999998764
No 81
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=22.24 E-value=77 Score=24.06 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHhcCC
Q 024740 140 LELTLRSWNHTEENKRRTLQKNDIAAAITRTD 171 (263)
Q Consensus 140 ~eLt~~A~~~A~~~KRKTLq~~DIa~AI~~~d 171 (263)
..+..+|+..|+..+...|.-.||.-|+.+.+
T Consensus 85 ~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~ 116 (143)
T 1k6k_A 85 QRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ 116 (143)
T ss_dssp HHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHhCc
Confidence 45667889999999999999999999998754
No 82
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.67 E-value=1.5e+02 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 024740 78 QLQQQLQSFWANQYQEIEKVNDFK 101 (263)
Q Consensus 78 ~~~q~L~~FW~~~~~eiE~~~d~k 101 (263)
-.+..|.+|=+++..||.++..|+
T Consensus 18 ~F~~~L~~FA~kH~~eI~~dp~fR 41 (234)
T 3cuq_A 18 MFKTNLEEFASKHKQEIRKNPEFR 41 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHcccccccCHHHH
Confidence 577899999999989998765543
No 83
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=20.40 E-value=39 Score=27.35 Aligned_cols=40 Identities=28% Similarity=0.519 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH-------HHHH---HhhccCCCCCCChHHHHHHHhcC
Q 024740 78 QLQQQLQSFWANQ-------YQEI---EKVNDFKNHSLPLARIKKIMKAD 117 (263)
Q Consensus 78 ~~~q~L~~FW~~~-------~~ei---E~~~d~k~~~LPLARIKKIMK~D 117 (263)
+++++|-+|+.+. +.=| .+...|.+...||+.||.|+...
T Consensus 5 n~ke~lis~f~~acssh~erldfics~resdtfs~vdvpl~pik~iiei~ 54 (137)
T 1tm9_A 5 NIKEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPLEPIKNIIEIT 54 (137)
T ss_dssp CHHHHHHHHHHTTCCSSTHHHHHHHHHTTSSSSSSSSSCHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHhhhHhhhhhheecccccccccCCCccHHHHHHHHHh
Confidence 4677888887653 2222 22345999999999999999864
Done!