BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024742
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LU1|A Chain A, Pfsub2 Solution Nmr Structure
Length = 149
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 71 QEFIELVRGENNLRA------ITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKA 124
QE I +++GE +L + I A+K L + H KE ++ ++ N C
Sbjct: 29 QELILVLKGELDLHSKNMKNVINNAKKNLEKYFKEHFKEFDKISYDISTPINFLCIFIPT 88
Query: 125 LFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKE 178
LF+ D L KQ L+ E + N S +T + YE D KE
Sbjct: 89 LFDMNNMDLL----KQALLILHNDLHEYVEN------WSFSSTYHTYEADYIKE 132
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 168 PYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVY 227
PY Y + D + R+LA L ++HH ++ + ++ + V+P GY+
Sbjct: 179 PYVYRSESGDPDECRDQXLRELAQLL---EEHHEEIAALSIESMVQGASGMIVMPEGYLA 235
Query: 228 STKAL 232
+ L
Sbjct: 236 GVREL 240
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 76 LVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTE------CTTYKALFEPK 129
LV GE A ++AP+ AT ++ L++ A + K+N + T Y A F K
Sbjct: 76 LVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTK 135
Query: 130 Q-WDF 133
WD
Sbjct: 136 NPWDL 140
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 168 PYCYEDDCTKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVY 227
PY Y + D + R+LA L ++HH ++ + ++ + V+P GY+
Sbjct: 179 PYVYRSESGDPDECRDQCLRELAQLL---EEHHEEIAALSIESMVQGASGMIVMPEGYLA 235
Query: 228 STKAL 232
+ L
Sbjct: 236 GVREL 240
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 1 MLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQN----KEVAPALAWCSDNKS 55
++ YY T K ++ + DL+D+E+F +VID + N KEV ++ NK+
Sbjct: 95 LISRDYYTTLNKEISNTGLVDLIDVELFM-GDEVIDEVVNFAHKKEVKVIISNHDFNKT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,558,367
Number of Sequences: 62578
Number of extensions: 302792
Number of successful extensions: 769
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 8
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)