Query 024742
Match_columns 263
No_of_seqs 166 out of 795
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 13:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bay_A PRE-mRNA splicing facto 99.2 7.5E-12 2.6E-16 84.8 4.0 55 202-262 3-58 (61)
2 2kr4_A Ubiquitin conjugation f 99.1 3.3E-11 1.1E-15 87.2 4.8 55 200-260 12-66 (85)
3 2kre_A Ubiquitin conjugation f 99.1 5.3E-11 1.8E-15 88.7 3.7 55 200-260 27-81 (100)
4 2yu4_A E3 SUMO-protein ligase 99.1 9.3E-11 3.2E-15 86.3 4.9 57 200-259 5-68 (94)
5 2f42_A STIP1 homology and U-bo 99.1 1.2E-10 4E-15 95.5 5.2 55 201-260 105-159 (179)
6 1wgm_A Ubiquitin conjugation f 99.0 1.1E-10 3.9E-15 86.6 4.1 55 200-260 20-75 (98)
7 1t1h_A Gspef-atpub14, armadill 99.0 2.7E-10 9.1E-15 80.6 5.1 56 200-260 6-61 (78)
8 2ct2_A Tripartite motif protei 99.0 4.2E-10 1.4E-14 81.2 5.9 62 199-260 12-74 (88)
9 2ysl_A Tripartite motif-contai 98.9 5E-10 1.7E-14 78.0 4.1 57 199-258 17-73 (73)
10 2xeu_A Ring finger protein 4; 98.9 5.5E-10 1.9E-14 75.6 3.1 58 202-262 3-64 (64)
11 3ng2_A RNF4, snurf, ring finge 98.9 9.5E-10 3.3E-14 76.1 4.1 60 200-262 8-71 (71)
12 2ecw_A Tripartite motif-contai 98.8 4E-09 1.4E-13 75.3 5.8 59 200-261 17-78 (85)
13 2ecv_A Tripartite motif-contai 98.8 2.8E-09 9.4E-14 76.1 4.9 60 199-261 16-78 (85)
14 2c2l_A CHIP, carboxy terminus 98.8 1.9E-09 6.4E-14 93.8 4.2 54 201-259 207-260 (281)
15 2ecy_A TNF receptor-associated 98.8 3.7E-09 1.3E-13 72.2 4.7 54 199-257 12-65 (66)
16 2egp_A Tripartite motif-contai 98.8 9.1E-10 3.1E-14 77.8 1.6 60 199-261 9-72 (79)
17 1g25_A CDK-activating kinase a 98.8 3.5E-09 1.2E-13 72.1 4.5 58 203-262 4-63 (65)
18 2ysj_A Tripartite motif-contai 98.8 5.5E-09 1.9E-13 70.6 5.1 48 198-248 16-63 (63)
19 1jm7_A BRCA1, breast cancer ty 98.8 3.4E-09 1.2E-13 79.9 4.2 57 201-260 20-76 (112)
20 3ztg_A E3 ubiquitin-protein li 98.8 5.4E-09 1.8E-13 76.1 4.8 55 200-258 11-67 (92)
21 3lrq_A E3 ubiquitin-protein li 98.7 1.2E-08 4.2E-13 75.6 5.1 57 200-261 20-77 (100)
22 2yur_A Retinoblastoma-binding 98.7 1.1E-08 3.6E-13 71.7 3.9 53 200-256 13-66 (74)
23 4ap4_A E3 ubiquitin ligase RNF 98.7 9E-09 3.1E-13 79.5 3.5 82 176-262 48-133 (133)
24 2djb_A Polycomb group ring fin 98.7 2.2E-08 7.5E-13 69.6 4.9 55 199-259 12-67 (72)
25 3fl2_A E3 ubiquitin-protein li 98.7 2.1E-08 7.1E-13 77.2 5.0 49 201-254 51-99 (124)
26 3htk_C E3 SUMO-protein ligase 98.6 1.4E-08 4.7E-13 87.4 3.5 57 199-259 178-237 (267)
27 3hct_A TNF receptor-associated 98.6 5.7E-08 1.9E-12 74.1 5.6 58 197-259 13-70 (118)
28 2y43_A E3 ubiquitin-protein li 98.6 4.4E-08 1.5E-12 72.3 4.6 55 200-260 20-75 (99)
29 2ecj_A Tripartite motif-contai 98.6 3.3E-08 1.1E-12 65.4 3.6 47 199-248 12-58 (58)
30 2d8t_A Dactylidin, ring finger 98.6 1.3E-08 4.4E-13 70.5 1.6 53 201-259 14-66 (71)
31 2csy_A Zinc finger protein 183 98.6 5.4E-08 1.8E-12 69.1 4.5 47 201-253 14-60 (81)
32 4ayc_A E3 ubiquitin-protein li 98.6 3.1E-08 1E-12 77.8 3.5 47 203-255 54-100 (138)
33 2ecm_A Ring finger and CHY zin 98.6 5.1E-08 1.8E-12 63.8 4.0 50 201-253 4-54 (55)
34 1z6u_A NP95-like ring finger p 98.5 7.2E-08 2.5E-12 76.8 5.1 49 202-255 78-126 (150)
35 2ect_A Ring finger protein 126 98.5 5.2E-08 1.8E-12 68.6 3.3 58 199-259 12-69 (78)
36 1rmd_A RAG1; V(D)J recombinati 98.5 9.1E-08 3.1E-12 72.6 4.8 56 199-259 20-75 (116)
37 2kiz_A E3 ubiquitin-protein li 98.5 2.4E-07 8.1E-12 63.5 6.4 53 200-255 12-64 (69)
38 2ckl_A Polycomb group ring fin 98.5 1.2E-07 4.2E-12 71.0 4.2 50 200-255 13-63 (108)
39 4ap4_A E3 ubiquitin ligase RNF 98.4 9.3E-08 3.2E-12 73.7 3.3 59 201-262 6-68 (133)
40 2ckl_B Ubiquitin ligase protei 98.4 2.4E-07 8E-12 74.8 4.5 52 199-255 51-103 (165)
41 2ea6_A Ring finger protein 4; 98.4 2.3E-07 7.9E-12 63.3 3.6 52 200-254 13-68 (69)
42 2l0b_A E3 ubiquitin-protein li 98.4 2.8E-07 9.7E-12 67.0 4.1 52 200-254 38-89 (91)
43 3l11_A E3 ubiquitin-protein li 98.4 1.2E-07 4E-12 71.9 2.0 50 200-254 13-62 (115)
44 1iym_A EL5; ring-H2 finger, ub 98.4 2.2E-07 7.7E-12 60.7 3.2 50 201-253 4-54 (55)
45 1jm7_B BARD1, BRCA1-associated 98.3 6.6E-08 2.3E-12 73.7 0.3 52 200-259 20-72 (117)
46 1x4j_A Ring finger protein 38; 98.3 3E-07 1E-11 64.2 3.5 53 200-255 21-73 (75)
47 4ic3_A E3 ubiquitin-protein li 98.3 1.7E-07 5.7E-12 65.6 2.0 51 201-263 23-74 (74)
48 2ep4_A Ring finger protein 24; 98.3 6.9E-07 2.4E-11 62.0 4.8 51 201-254 14-64 (74)
49 2ecg_A Baculoviral IAP repeat- 98.3 3.7E-07 1.3E-11 63.9 3.1 51 201-263 24-75 (75)
50 3hcs_A TNF receptor-associated 98.3 5.9E-07 2E-11 72.7 4.8 57 198-259 14-70 (170)
51 1bor_A Transcription factor PM 98.2 1.5E-07 5E-12 62.2 0.2 47 201-256 5-51 (56)
52 1chc_A Equine herpes virus-1 r 98.2 6.4E-07 2.2E-11 61.1 3.5 47 202-253 5-51 (68)
53 1e4u_A Transcriptional repress 98.2 1.9E-06 6.6E-11 60.8 5.2 56 200-258 9-66 (78)
54 2ecn_A Ring finger protein 141 98.2 2E-07 7E-12 64.1 -0.1 55 199-260 12-66 (70)
55 3knv_A TNF receptor-associated 98.1 4.6E-07 1.6E-11 71.4 1.1 52 198-254 27-78 (141)
56 1v87_A Deltex protein 2; ring- 98.1 2.9E-06 9.8E-11 63.9 5.2 36 220-255 58-95 (114)
57 2vje_B MDM4 protein; proto-onc 98.1 1.9E-06 6.5E-11 58.2 3.6 53 203-263 8-63 (63)
58 2ecl_A Ring-box protein 2; RNF 98.1 1.5E-06 5.2E-11 61.7 2.7 51 205-258 29-80 (81)
59 2vje_A E3 ubiquitin-protein li 98.1 2.5E-06 8.7E-11 57.8 3.5 53 203-263 9-64 (64)
60 2y1n_A E3 ubiquitin-protein li 98.0 2.9E-06 9.9E-11 77.1 4.1 53 203-260 333-385 (389)
61 1wim_A KIAA0161 protein; ring 97.9 4.1E-06 1.4E-10 61.0 2.5 60 201-260 4-72 (94)
62 3dpl_R Ring-box protein 1; ubi 97.8 1.5E-05 5.1E-10 59.6 4.0 39 216-257 66-104 (106)
63 2yho_A E3 ubiquitin-protein li 97.8 7.4E-06 2.5E-10 57.9 1.8 49 202-262 18-67 (79)
64 3m62_A Ubiquitin conjugation f 97.6 3.6E-05 1.2E-09 76.9 4.9 53 201-259 890-943 (968)
65 3t6p_A Baculoviral IAP repeat- 97.6 9.3E-06 3.2E-10 73.0 0.6 51 201-263 294-345 (345)
66 2ea5_A Cell growth regulator w 97.6 2.5E-05 8.6E-10 53.5 2.4 49 202-262 15-64 (68)
67 2d8s_A Cellular modulator of i 97.5 4.9E-05 1.7E-09 53.8 3.2 53 203-257 16-73 (80)
68 4a0k_B E3 ubiquitin-protein li 97.4 2.8E-05 9.6E-10 59.1 0.0 38 217-257 78-115 (117)
69 3vk6_A E3 ubiquitin-protein li 96.2 0.004 1.4E-07 45.4 3.9 34 218-253 15-48 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 95.8 0.0069 2.4E-07 40.1 3.2 48 203-254 7-59 (60)
71 3i2d_A E3 SUMO-protein ligase 95.5 0.012 4.2E-07 52.8 4.8 53 202-258 249-304 (371)
72 4fo9_A E3 SUMO-protein ligase 95.0 0.024 8.2E-07 50.8 5.0 53 202-258 215-270 (360)
73 2ct0_A Non-SMC element 1 homol 95.0 0.017 5.8E-07 39.9 3.1 49 204-255 17-65 (74)
74 4ayb_P DNA-directed RNA polyme 93.1 0.0024 8.1E-08 39.7 -3.8 27 220-251 6-32 (48)
75 2k5c_A Uncharacterized protein 91.9 0.011 3.8E-07 41.1 -2.1 55 197-253 3-62 (95)
76 3k1l_B Fancl; UBC, ring, RWD, 89.9 0.12 4E-06 46.1 1.9 34 221-254 332-373 (381)
77 2nxp_A Transcription initiatio 89.3 0.34 1.1E-05 38.2 4.0 62 46-111 34-99 (156)
78 2ecn_A Ring finger protein 141 89.2 0.084 2.9E-06 35.2 0.3 46 177-224 16-70 (70)
79 2xjy_A Rhombotin-2; oncoprotei 88.0 0.24 8.4E-06 37.3 2.3 76 177-256 3-80 (131)
80 2jny_A Uncharacterized BCR; st 86.4 0.32 1.1E-05 32.8 1.8 44 196-261 4-47 (67)
81 2jr6_A UPF0434 protein NMA0874 86.1 0.34 1.2E-05 32.7 1.9 42 198-261 4-45 (68)
82 2hf1_A Tetraacyldisaccharide-1 84.7 0.29 9.9E-06 33.0 1.0 42 198-261 4-45 (68)
83 1m3v_A FLIN4, fusion of the LI 84.4 0.22 7.4E-06 37.3 0.3 78 177-258 6-85 (122)
84 2js4_A UPF0434 protein BB2007; 84.1 0.42 1.4E-05 32.4 1.6 42 198-261 4-45 (70)
85 1x61_A Thyroid receptor intera 83.5 1.7 5.8E-05 28.7 4.6 59 177-237 6-66 (72)
86 2j4b_A TAF5, transcription ini 83.5 0.81 2.8E-05 35.2 3.3 60 45-109 14-77 (138)
87 2j49_A Transcription initiatio 83.1 0.33 1.1E-05 38.0 0.8 59 46-109 17-79 (148)
88 1vd4_A Transcription initiatio 82.4 0.78 2.7E-05 29.4 2.4 37 221-257 18-54 (62)
89 2pk7_A Uncharacterized protein 81.7 0.48 1.7E-05 32.0 1.2 41 199-261 5-45 (69)
90 1weo_A Cellulose synthase, cat 81.3 2.2 7.6E-05 30.1 4.5 52 201-254 15-70 (93)
91 3nw0_A Non-structural maintena 81.2 1.6 5.4E-05 36.7 4.5 50 202-255 180-230 (238)
92 2jrr_A Uncharacterized protein 80.6 0.55 1.9E-05 31.5 1.1 20 240-259 38-57 (67)
93 2wbs_A Krueppel-like factor 4; 80.0 3.5 0.00012 27.6 5.3 35 222-256 42-79 (89)
94 1f2i_G Fusion of N-terminal 17 78.7 2.8 9.6E-05 27.1 4.3 34 223-256 27-63 (73)
95 2xqn_T Testin, TESS; metal-bin 76.4 0.85 2.9E-05 34.0 1.2 73 177-256 4-77 (126)
96 2kmk_A Zinc finger protein GFI 76.0 5.3 0.00018 26.1 5.2 35 222-256 34-71 (82)
97 2dna_A Unnamed protein product 75.2 1.1 3.7E-05 30.1 1.3 27 29-55 32-60 (67)
98 1iml_A CRIP, cysteine rich int 74.8 0.89 3E-05 30.6 0.8 66 179-251 3-70 (76)
99 2kpi_A Uncharacterized protein 74.1 1.5 5.1E-05 28.3 1.7 41 196-260 4-46 (56)
100 2jvm_A Uncharacterized protein 73.8 0.83 2.9E-05 31.7 0.5 18 240-257 51-68 (80)
101 2rgt_A Fusion of LIM/homeobox 72.6 0.96 3.3E-05 35.7 0.7 82 177-258 66-149 (169)
102 2rgt_A Fusion of LIM/homeobox 72.3 3.5 0.00012 32.3 4.0 72 177-256 7-79 (169)
103 2ebt_A Krueppel-like factor 5; 71.7 7 0.00024 26.7 5.1 35 222-256 52-89 (100)
104 2lt7_A Transcriptional regulat 71.7 6.7 0.00023 29.3 5.3 11 202-212 50-60 (133)
105 2jz8_A Uncharacterized protein 71.6 1.5 5E-05 30.9 1.3 19 240-258 46-64 (87)
106 1x6a_A LIMK-2, LIM domain kina 71.3 9.3 0.00032 25.6 5.5 65 171-237 10-76 (81)
107 2d8y_A Eplin protein; LIM doma 71.2 2.8 9.6E-05 29.2 2.9 60 176-237 15-75 (91)
108 1b8t_A Protein (CRP1); LIM dom 70.8 3.1 0.0001 33.4 3.4 59 177-237 8-67 (192)
109 2kvh_A Zinc finger and BTB dom 69.1 2 7E-05 21.6 1.3 15 242-256 3-17 (27)
110 1p7a_A BF3, BKLF, kruppel-like 69.1 2.1 7.2E-05 23.5 1.5 17 240-256 9-25 (37)
111 2els_A Zinc finger protein 406 68.7 2.3 7.9E-05 23.2 1.6 17 240-256 7-23 (36)
112 2cup_A Skeletal muscle LIM-pro 68.7 0.75 2.6E-05 32.8 -0.7 72 177-256 6-80 (101)
113 2lv2_A Insulinoma-associated p 68.7 3.3 0.00011 28.7 2.7 36 222-257 33-71 (85)
114 2bwb_A Ubiquitin-like protein 68.3 2 6.8E-05 26.4 1.3 21 31-51 22-44 (46)
115 4gzn_C ZFP-57, zinc finger pro 68.2 7.2 0.00024 24.9 4.1 36 221-256 8-46 (60)
116 2jp9_A Wilms tumor 1; DNA bind 68.2 9.5 0.00032 26.9 5.3 55 201-255 35-109 (119)
117 2djb_A Polycomb group ring fin 67.7 1.9 6.6E-05 28.5 1.3 44 177-221 16-69 (72)
118 2dmd_A Zinc finger protein 64, 67.3 10 0.00036 25.5 5.2 35 222-256 41-78 (96)
119 3knv_A TNF receptor-associated 67.0 1.2 4.1E-05 34.2 0.1 77 177-256 32-120 (141)
120 2cuq_A Four and A half LIM dom 66.7 6.7 0.00023 26.3 4.0 63 171-236 10-73 (80)
121 2m0f_A Zinc finger and BTB dom 66.6 2.3 8E-05 21.5 1.3 14 242-255 2-15 (29)
122 2cp9_A EF-TS, EF-TSMT, elongat 66.1 6.2 0.00021 26.1 3.5 22 33-54 26-49 (64)
123 2epa_A Krueppel-like factor 10 66.0 5.9 0.0002 25.4 3.5 34 223-256 25-63 (72)
124 2kvg_A Zinc finger and BTB dom 65.6 2.3 8E-05 21.5 1.1 15 242-256 3-17 (27)
125 1wr1_B Ubiquitin-like protein 65.4 2.8 9.4E-05 27.2 1.6 24 30-53 31-56 (58)
126 2elx_A Zinc finger protein 406 65.2 2.9 9.8E-05 22.4 1.5 17 240-256 5-21 (35)
127 2dah_A Ubiquilin-3; UBA domain 65.1 2.9 0.0001 26.6 1.7 22 32-53 25-48 (54)
128 3uk3_C Zinc finger protein 217 65.0 5.5 0.00019 24.1 3.0 35 222-256 9-46 (57)
129 2elp_A Zinc finger protein 406 65.0 3.1 0.0001 22.8 1.6 15 241-255 8-22 (37)
130 1ubd_C Protein (YY1 zinc finge 64.9 12 0.00041 26.6 5.4 41 217-257 61-109 (124)
131 2elt_A Zinc finger protein 406 64.8 2.9 9.8E-05 22.7 1.5 17 240-256 7-23 (36)
132 1rut_X Flinc4, fusion protein 64.8 1.3 4.3E-05 35.6 -0.2 76 177-256 6-83 (188)
133 2kvf_A Zinc finger and BTB dom 64.5 2.9 9.9E-05 21.1 1.4 15 242-256 3-17 (28)
134 2knz_A Ubiquilin-4; cytoplasm, 64.3 6.5 0.00022 24.7 3.2 23 31-53 26-50 (53)
135 1bbo_A Human enhancer-binding 63.7 6 0.00021 23.9 3.0 34 223-256 7-43 (57)
136 1a7i_A QCRP2 (LIM1); LIM domai 63.6 1.3 4.3E-05 30.3 -0.4 67 177-250 8-75 (81)
137 1ard_A Yeast transcription fac 63.5 2.7 9.1E-05 21.3 1.1 15 242-256 2-16 (29)
138 1yuz_A Nigerythrin; rubrythrin 63.3 2.7 9.1E-05 34.4 1.5 14 201-214 170-183 (202)
139 1znf_A 31ST zinc finger from X 63.1 2.6 9E-05 21.0 1.0 14 243-256 2-15 (27)
140 2elq_A Zinc finger protein 406 63.1 3.2 0.00011 22.5 1.5 17 240-256 7-23 (36)
141 2lvu_A Zinc finger and BTB dom 67.0 1.5 5.2E-05 21.9 0.0 16 242-257 2-17 (26)
142 2m0e_A Zinc finger and BTB dom 62.4 3 0.0001 21.0 1.2 15 242-256 2-16 (29)
143 2jtn_A LIM domain-binding prot 62.4 4.7 0.00016 32.0 2.8 60 176-235 119-180 (182)
144 1srk_A Zinc finger protein ZFP 61.4 3.6 0.00012 22.1 1.5 17 240-256 5-21 (35)
145 2eps_A POZ-, at HOOK-, and zin 61.3 15 0.00051 22.1 4.6 34 221-254 16-53 (54)
146 1rik_A E6APC1 peptide; E6-bind 61.2 3.2 0.00011 21.0 1.2 15 242-256 2-16 (29)
147 2ekk_A UBA domain from E3 ubiq 61.0 7.8 0.00027 23.5 3.1 22 32-53 24-46 (47)
148 2elr_A Zinc finger protein 406 60.9 3.8 0.00013 22.1 1.5 17 240-256 7-23 (36)
149 2m0d_A Zinc finger and BTB dom 60.5 3.9 0.00013 20.6 1.5 14 242-255 3-16 (30)
150 2elo_A Zinc finger protein 406 60.4 3.3 0.00011 22.6 1.2 17 240-256 7-23 (37)
151 2adr_A ADR1; transcription reg 60.2 7.5 0.00026 23.8 3.0 34 223-256 8-44 (60)
152 2drp_A Protein (tramtrack DNA- 60.1 10 0.00036 23.6 3.8 35 222-256 15-54 (66)
153 2dlq_A GLI-kruppel family memb 59.9 15 0.0005 26.0 5.0 79 177-256 8-108 (124)
154 1paa_A Yeast transcription fac 59.9 3.1 0.0001 21.3 0.9 15 242-256 2-16 (30)
155 2yt9_A Zinc finger-containing 59.7 16 0.00055 24.5 5.0 35 222-256 40-79 (95)
156 2lce_A B-cell lymphoma 6 prote 59.3 13 0.00043 23.9 4.2 35 222-256 22-59 (74)
157 1vej_A Riken cDNA 4931431F19; 59.0 3.3 0.00011 28.2 1.1 24 30-53 43-68 (74)
158 2cos_A Serine/threonine protei 58.9 7.7 0.00026 24.6 2.7 21 33-53 25-48 (54)
159 3f6q_B LIM and senescent cell 58.9 2.8 9.5E-05 27.4 0.7 58 176-235 11-70 (72)
160 2elv_A Zinc finger protein 406 58.8 4.4 0.00015 21.9 1.5 16 241-256 8-23 (36)
161 1b8t_A Protein (CRP1); LIM dom 58.8 3.5 0.00012 33.0 1.5 68 177-251 116-184 (192)
162 2el5_A Zinc finger protein 268 58.5 3.3 0.00011 23.4 1.0 17 240-256 8-24 (42)
163 2jy5_A Ubiquilin-1; UBA, alter 58.5 9 0.00031 24.0 3.1 22 31-52 27-50 (52)
164 2jtn_A LIM domain-binding prot 58.4 3.2 0.00011 33.0 1.2 72 177-256 61-133 (182)
165 2elm_A Zinc finger protein 406 58.2 3.5 0.00012 22.7 1.0 17 240-256 7-23 (37)
166 2i5o_A DNA polymerase ETA; zin 58.2 4 0.00014 24.2 1.3 17 240-256 7-23 (39)
167 1x6e_A Zinc finger protein 24; 57.7 14 0.00047 23.6 4.2 36 221-256 18-56 (72)
168 2yu5_A Zinc finger protein 473 57.5 4.3 0.00015 23.2 1.4 17 240-256 10-26 (44)
169 1wyh_A SLIM 2, skeletal muscle 57.5 6.8 0.00023 25.6 2.6 58 177-236 6-65 (72)
170 2l4z_A DNA endonuclease RBBP8, 57.5 3.2 0.00011 31.0 0.9 59 177-235 62-121 (123)
171 1fv5_A First zinc finger of U- 57.3 3.6 0.00012 23.6 0.9 17 240-256 6-22 (36)
172 1x5w_A Zinc finger protein 64, 57.1 14 0.00048 23.4 4.1 36 221-256 13-51 (70)
173 2yte_A Zinc finger protein 473 57.0 3.8 0.00013 23.1 1.0 17 240-256 8-24 (42)
174 2jun_A Midline-1; B-BOX, TRIM, 56.9 7.1 0.00024 27.5 2.7 30 203-234 4-35 (101)
175 1x3h_A Leupaxin; paxillin fami 56.0 8.6 0.00029 25.7 2.9 63 171-236 10-73 (80)
176 1klr_A Zinc finger Y-chromosom 55.9 4.1 0.00014 20.5 1.0 15 242-256 2-16 (30)
177 2ytb_A Zinc finger protein 32; 55.9 5.1 0.00017 22.5 1.5 17 240-256 9-25 (42)
178 2e72_A POGO transposable eleme 55.8 3.5 0.00012 25.6 0.7 18 240-257 10-27 (49)
179 2ept_A Zinc finger protein 32; 55.8 5.2 0.00018 22.4 1.5 17 240-256 8-24 (41)
180 1njq_A Superman protein; zinc- 55.7 5.1 0.00018 22.2 1.5 16 241-256 5-20 (39)
181 2dak_A Ubiquitin carboxyl-term 55.7 11 0.00037 24.5 3.2 26 32-57 24-51 (63)
182 2l3k_A Rhombotin-2, linker, LI 55.7 24 0.00081 25.8 5.6 59 178-237 10-70 (123)
183 2gmg_A Hypothetical protein PF 55.5 3.6 0.00012 30.0 0.9 28 217-252 67-94 (105)
184 2lvr_A Zinc finger and BTB dom 60.4 2.5 8.4E-05 21.6 0.0 16 242-257 3-18 (30)
185 2rpc_A Zinc finger protein ZIC 55.5 9.5 0.00033 28.5 3.4 54 203-256 63-136 (155)
186 2ely_A Zinc finger protein 224 55.4 5.8 0.0002 22.9 1.8 18 240-257 10-27 (46)
187 2g3q_A Protein YBL047C; endocy 55.1 12 0.0004 22.2 3.1 22 32-53 19-42 (43)
188 2cur_A Skeletal muscle LIM-pro 55.1 7 0.00024 25.4 2.3 58 177-237 6-64 (69)
189 2enf_A Zinc finger protein 347 55.1 5.2 0.00018 23.1 1.5 17 240-256 10-26 (46)
190 2eof_A Zinc finger protein 268 55.1 5.5 0.00019 22.6 1.6 17 240-256 10-26 (44)
191 2lvt_A Zinc finger and BTB dom 60.0 2.5 8.6E-05 21.5 0.0 14 243-256 3-16 (29)
192 2en2_A B-cell lymphoma 6 prote 55.0 5.3 0.00018 22.5 1.5 17 240-256 9-25 (42)
193 1z96_A DNA-damage, UBA-domain 54.7 12 0.00042 21.5 3.1 18 33-50 20-39 (40)
194 1j2o_A FLIN2, fusion of rhombo 54.6 8.6 0.00029 27.9 2.9 60 177-237 4-65 (114)
195 2epv_A Zinc finger protein 268 54.5 5.5 0.00019 22.8 1.5 17 240-256 10-26 (44)
196 2emi_A Zinc finger protein 484 54.4 5.4 0.00018 23.0 1.5 17 240-256 10-26 (46)
197 2enh_A Zinc finger protein 28 54.3 5.2 0.00018 23.2 1.4 16 241-256 11-26 (46)
198 2epw_A Zinc finger protein 268 54.2 5.3 0.00018 23.0 1.4 17 240-256 10-26 (46)
199 1a1h_A QGSR zinc finger peptid 53.8 17 0.00058 24.0 4.2 40 217-256 33-76 (90)
200 1g47_A Pinch protein; LIM doma 53.6 5 0.00017 26.7 1.3 58 177-236 12-71 (77)
201 2ctd_A Zinc finger protein 512 53.6 12 0.00041 26.0 3.5 36 221-256 38-76 (96)
202 2en3_A ZFP-95, zinc finger pro 53.6 5.5 0.00019 23.0 1.4 17 240-256 10-26 (46)
203 2eoy_A Zinc finger protein 473 53.4 5.5 0.00019 23.1 1.4 16 241-256 11-26 (46)
204 2yts_A Zinc finger protein 484 53.3 5.7 0.0002 22.9 1.5 17 240-256 10-26 (46)
205 4ae4_A Ubiquitin-associated pr 53.3 10 0.00034 28.2 3.1 22 31-52 90-113 (118)
206 2eow_A Zinc finger protein 347 53.1 6.1 0.00021 22.7 1.6 17 240-256 10-26 (46)
207 2eoj_A Zinc finger protein 268 52.7 5.1 0.00017 22.8 1.1 17 240-256 10-26 (44)
208 2lni_A Stress-induced-phosphop 52.7 44 0.0015 22.8 6.6 15 38-52 27-41 (133)
209 2ee8_A Protein ODD-skipped-rel 52.6 17 0.00059 24.9 4.3 34 223-256 51-87 (106)
210 2ytf_A Zinc finger protein 268 52.6 6.1 0.00021 22.7 1.5 17 240-256 10-26 (46)
211 2epc_A Zinc finger protein 32; 52.5 5.9 0.0002 22.2 1.4 17 240-256 9-25 (42)
212 2ytg_A ZFP-95, zinc finger pro 52.5 6 0.0002 22.8 1.5 17 240-256 10-26 (46)
213 4a18_Q RPL36, 60S ribosomal pr 52.4 23 0.00079 25.6 4.7 44 67-110 52-100 (104)
214 2emg_A Zinc finger protein 484 52.4 6.2 0.00021 22.7 1.5 16 241-256 11-26 (46)
215 1ify_A HHR23A, UV excision rep 52.3 12 0.0004 23.1 2.8 23 31-53 22-46 (49)
216 2emb_A Zinc finger protein 473 52.3 6.4 0.00022 22.4 1.5 17 240-256 10-26 (44)
217 2eox_A Zinc finger protein 473 52.2 6.1 0.00021 22.5 1.5 17 240-256 10-26 (44)
218 2yrj_A Zinc finger protein 473 52.1 6.3 0.00022 22.7 1.5 17 240-256 10-26 (46)
219 2dkl_A Trinucleotide repeat co 52.0 11 0.00038 26.3 2.9 28 32-59 36-65 (85)
220 6rxn_A Rubredoxin; electron tr 52.0 2.4 8.4E-05 26.1 -0.4 10 242-251 30-39 (46)
221 2eq1_A Zinc finger protein 347 51.9 5.9 0.0002 22.8 1.4 17 240-256 10-26 (46)
222 2em4_A Zinc finger protein 28 51.9 6.1 0.00021 22.8 1.4 17 240-256 10-26 (46)
223 2en7_A Zinc finger protein 268 51.8 5.5 0.00019 22.6 1.2 16 241-256 11-26 (44)
224 1wji_A Tudor domain containing 51.6 15 0.00052 23.9 3.5 25 32-56 24-50 (63)
225 2ytp_A Zinc finger protein 484 51.5 6.5 0.00022 22.7 1.5 17 240-256 10-26 (46)
226 1wgn_A UBAP1, ubiquitin associ 51.5 17 0.00057 23.8 3.5 23 31-53 33-57 (63)
227 2emj_A Zinc finger protein 28 51.3 6.4 0.00022 22.7 1.5 17 240-256 10-26 (46)
228 2yu8_A Zinc finger protein 347 51.2 6.2 0.00021 22.8 1.4 17 240-256 10-26 (46)
229 3u4t_A TPR repeat-containing p 51.1 33 0.0011 27.1 6.3 88 2-94 14-102 (272)
230 1rim_A E6APC2 peptide; E6-bind 50.9 5.1 0.00017 21.4 0.9 15 242-256 2-16 (33)
231 2yti_A Zinc finger protein 347 50.9 5.6 0.00019 22.9 1.1 17 240-256 10-26 (46)
232 2eon_A ZFP-95, zinc finger pro 50.7 6.6 0.00023 22.7 1.4 17 240-256 10-26 (46)
233 3na7_A HP0958; flagellar bioge 50.7 16 0.00055 30.6 4.4 31 223-254 204-234 (256)
234 2ene_A Zinc finger protein 347 50.7 6.5 0.00022 22.6 1.4 17 240-256 10-26 (46)
235 2eoz_A Zinc finger protein 473 50.7 5.9 0.0002 22.9 1.2 17 240-256 10-26 (46)
236 2ep3_A Zinc finger protein 484 50.6 6.9 0.00023 22.5 1.5 17 240-256 10-26 (46)
237 2eos_A B-cell lymphoma 6 prote 50.5 6.6 0.00023 22.1 1.4 17 240-256 9-25 (42)
238 2yto_A Zinc finger protein 484 50.5 6.8 0.00023 22.6 1.5 17 240-256 10-26 (46)
239 2en9_A Zinc finger protein 28 50.5 6.8 0.00023 22.6 1.5 17 240-256 10-26 (46)
240 2v5f_A Prolyl 4-hydroxylase su 50.2 45 0.0015 22.9 6.2 57 36-93 14-73 (104)
241 3mjh_B Early endosome antigen 50.2 2.8 9.6E-05 24.1 -0.3 14 243-256 6-19 (34)
242 2eme_A Zinc finger protein 473 50.2 7.1 0.00024 22.4 1.5 17 240-256 10-26 (46)
243 2co8_A NEDD9 interacting prote 50.2 7.5 0.00026 26.4 1.8 60 176-235 15-75 (82)
244 2eov_A Zinc finger protein 484 50.1 6.8 0.00023 22.5 1.4 17 240-256 10-26 (46)
245 2eml_A Zinc finger protein 28 50.1 6.9 0.00024 22.5 1.5 17 240-256 10-26 (46)
246 2em3_A Zinc finger protein 28 50.0 6.9 0.00024 22.5 1.5 17 240-256 10-26 (46)
247 2kck_A TPR repeat; tetratricop 50.0 44 0.0015 21.8 6.0 53 38-93 51-104 (112)
248 2eor_A Zinc finger protein 224 50.0 7.4 0.00025 22.3 1.6 17 240-256 10-26 (46)
249 1whc_A RSGI RUH-027, UBA/UBX 3 49.9 18 0.0006 23.7 3.5 25 32-56 24-51 (64)
250 2emh_A Zinc finger protein 484 49.8 7.5 0.00026 22.4 1.6 17 240-256 10-26 (46)
251 2em6_A Zinc finger protein 224 49.8 7.2 0.00024 22.5 1.5 17 240-256 10-26 (46)
252 2emf_A Zinc finger protein 484 49.6 7 0.00024 22.6 1.4 17 240-256 10-26 (46)
253 2eq3_A Zinc finger protein 347 49.6 6 0.0002 22.8 1.1 17 240-256 10-26 (46)
254 2em2_A Zinc finger protein 28 49.5 7.3 0.00025 22.5 1.5 17 240-256 10-26 (46)
255 2eop_A Zinc finger protein 268 49.4 7.6 0.00026 22.3 1.6 17 240-256 10-26 (46)
256 2eq0_A Zinc finger protein 347 49.4 7.7 0.00026 22.3 1.6 17 240-256 10-26 (46)
257 2epu_A Zinc finger protein 32; 49.2 6.4 0.00022 22.6 1.2 16 241-256 11-26 (45)
258 2el4_A Zinc finger protein 268 49.1 7.3 0.00025 22.4 1.5 17 240-256 10-26 (46)
259 2cu8_A Cysteine-rich protein 2 49.1 4 0.00014 27.2 0.3 58 177-236 10-69 (76)
260 2ytn_A Zinc finger protein 347 49.1 7.5 0.00026 22.3 1.5 17 240-256 10-26 (46)
261 2ep1_A Zinc finger protein 484 49.0 6.5 0.00022 22.6 1.2 17 240-256 10-26 (46)
262 2epx_A Zinc finger protein 28 49.0 7.5 0.00026 22.4 1.5 17 240-256 10-26 (47)
263 2en8_A Zinc finger protein 224 48.9 7.7 0.00026 22.3 1.5 17 240-256 10-26 (46)
264 2em7_A Zinc finger protein 224 48.9 7.6 0.00026 22.3 1.5 17 240-256 10-26 (46)
265 2ytk_A Zinc finger protein 347 48.9 7.2 0.00025 22.4 1.4 17 240-256 10-26 (46)
266 2eoh_A Zinc finger protein 28 48.9 6.8 0.00023 22.6 1.3 16 241-256 11-26 (46)
267 2yth_A Zinc finger protein 224 48.9 7.2 0.00025 22.5 1.4 17 240-256 10-26 (46)
268 2em8_A Zinc finger protein 224 48.8 7.4 0.00025 22.4 1.5 17 240-256 10-26 (46)
269 3iuf_A Zinc finger protein UBI 48.7 7.6 0.00026 23.0 1.5 17 240-256 5-21 (48)
270 2em5_A ZFP-95, zinc finger pro 48.7 7.5 0.00026 22.4 1.5 17 240-256 10-26 (46)
271 2ytj_A Zinc finger protein 484 48.6 7.5 0.00026 22.4 1.5 17 240-256 10-26 (46)
272 2em9_A Zinc finger protein 224 48.5 7.8 0.00027 22.2 1.5 17 240-256 10-26 (46)
273 2eq2_A Zinc finger protein 347 48.5 6.6 0.00023 22.6 1.2 17 240-256 10-26 (46)
274 2eoo_A ZFP-95, zinc finger pro 48.5 7.8 0.00027 22.3 1.5 17 240-256 10-26 (46)
275 2i13_A AART; DNA binding, zinc 48.4 27 0.00093 26.9 5.2 55 202-256 105-175 (190)
276 2emx_A Zinc finger protein 268 48.4 7.5 0.00026 22.1 1.4 17 240-256 8-24 (44)
277 2ep2_A Zinc finger protein 484 48.3 7.9 0.00027 22.3 1.5 17 240-256 10-26 (46)
278 2eoq_A Zinc finger protein 224 48.3 6.9 0.00024 22.5 1.2 17 240-256 10-26 (46)
279 2emm_A ZFP-95, zinc finger pro 48.3 7.9 0.00027 22.2 1.5 17 240-256 10-26 (46)
280 2eom_A ZFP-95, zinc finger pro 48.2 7.1 0.00024 22.6 1.3 16 241-256 11-26 (46)
281 1x63_A Skeletal muscle LIM-pro 48.2 13 0.00045 24.9 2.8 65 171-237 10-76 (82)
282 2emy_A Zinc finger protein 268 48.1 7.6 0.00026 22.3 1.4 17 240-256 10-26 (46)
283 1wig_A KIAA1808 protein; LIM d 48.1 12 0.00039 24.8 2.5 59 177-237 6-65 (73)
284 2epz_A Zinc finger protein 28 48.0 8.2 0.00028 22.2 1.6 17 240-256 10-26 (46)
285 2emz_A ZFP-95, zinc finger pro 47.9 7.4 0.00025 22.4 1.4 17 240-256 10-26 (46)
286 1veg_A NEDD8 ultimate buster-1 47.6 15 0.00052 25.5 3.0 27 31-57 43-71 (83)
287 2eou_A Zinc finger protein 473 47.5 7.6 0.00026 22.1 1.3 17 240-256 10-26 (44)
288 2emp_A Zinc finger protein 347 47.3 8.3 0.00028 22.1 1.5 17 240-256 10-26 (46)
289 2ema_A Zinc finger protein 347 47.3 8 0.00027 22.2 1.4 17 240-256 10-26 (46)
290 2emk_A Zinc finger protein 28 47.2 7.8 0.00027 22.3 1.4 17 240-256 10-26 (46)
291 2elz_A Zinc finger protein 224 47.2 8.1 0.00028 22.3 1.4 17 240-256 10-26 (46)
292 2el6_A Zinc finger protein 268 47.1 8.2 0.00028 22.2 1.5 17 240-256 10-26 (46)
293 2ysp_A Zinc finger protein 224 47.1 7.3 0.00025 22.4 1.2 17 240-256 10-26 (46)
294 2em0_A Zinc finger protein 224 47.0 7.9 0.00027 22.3 1.4 17 240-256 10-26 (46)
295 2yso_A ZFP-95, zinc finger pro 46.6 9 0.00031 22.0 1.6 17 240-256 10-26 (46)
296 2eq4_A Zinc finger protein 224 46.6 8.4 0.00029 22.1 1.4 17 240-256 10-26 (46)
297 2enc_A Zinc finger protein 224 46.3 8.8 0.0003 22.0 1.5 17 240-256 10-26 (46)
298 1yui_A GAGA-factor; complex (D 46.3 8.5 0.00029 23.2 1.5 18 239-256 21-38 (54)
299 2d9k_A FLN29 gene product; zin 46.3 11 0.00037 25.0 2.1 38 221-258 21-59 (75)
300 2jvx_A NF-kappa-B essential mo 46.1 7.1 0.00024 21.4 0.9 14 201-214 2-15 (28)
301 1llm_C Chimera of ZIF23-GCN4; 46.1 18 0.00062 24.1 3.3 34 223-256 9-45 (88)
302 2eoe_A Zinc finger protein 347 46.1 5.8 0.0002 22.8 0.6 17 240-256 10-26 (46)
303 2ytq_A Zinc finger protein 268 46.1 8.8 0.0003 22.1 1.5 17 240-256 10-26 (46)
304 2egq_A FHL1 protein; LIM domai 46.0 7.7 0.00026 25.7 1.3 62 171-234 10-76 (77)
305 2k5c_A Uncharacterized protein 45.8 6.2 0.00021 27.3 0.8 18 202-219 51-68 (95)
306 2yrm_A B-cell lymphoma 6 prote 45.7 8.7 0.0003 21.8 1.4 17 240-256 8-24 (43)
307 2en1_A Zinc finger protein 224 45.6 8.1 0.00028 22.2 1.3 17 240-256 10-26 (46)
308 2en6_A Zinc finger protein 268 45.3 7.8 0.00027 22.3 1.2 17 240-256 10-26 (46)
309 2ytd_A Zinc finger protein 473 45.3 9.3 0.00032 21.9 1.5 17 240-256 10-26 (46)
310 2ytr_A Zinc finger protein 347 45.3 7.9 0.00027 22.2 1.2 17 240-256 10-26 (46)
311 2eod_A TNF receptor-associated 45.2 38 0.0013 21.0 4.7 38 218-255 10-50 (66)
312 2kfq_A FP1; protein, de novo p 45.1 5.3 0.00018 21.1 0.3 15 242-256 2-16 (32)
313 2ep0_A Zinc finger protein 28 44.9 9.4 0.00032 21.9 1.5 17 240-256 10-26 (46)
314 2ytm_A Zinc finger protein 28 44.9 8.4 0.00029 22.2 1.3 17 240-256 10-26 (46)
315 2ehe_A Four and A half LIM dom 44.7 12 0.00043 25.0 2.3 63 171-235 10-74 (82)
316 1nyp_A Pinch protein; LIM doma 44.5 9.8 0.00033 24.4 1.6 56 177-235 6-62 (66)
317 1wiv_A UBP14, ubiquitin-specif 44.4 20 0.0007 24.0 3.3 24 31-54 43-68 (73)
318 1elr_A TPR2A-domain of HOP; HO 44.2 70 0.0024 21.4 6.5 57 38-94 49-107 (131)
319 2dag_A Ubiquitin carboxyl-term 44.0 21 0.00072 24.0 3.3 26 32-57 24-52 (74)
320 2dai_A Ubadc1, ubiquitin assoc 43.8 25 0.00086 24.3 3.7 25 32-56 44-70 (83)
321 2d9h_A Zinc finger protein 692 43.7 19 0.00065 23.2 3.1 35 222-256 12-52 (78)
322 1x4k_A Skeletal muscle LIM-pro 43.2 7.9 0.00027 25.2 1.0 58 177-236 6-65 (72)
323 2dj7_A Actin-binding LIM prote 43.1 8 0.00027 26.2 1.0 57 177-236 16-73 (80)
324 3vhs_A ATPase wrnip1; zinc fin 42.9 8.2 0.00028 20.5 0.8 15 242-256 6-20 (29)
325 2ytt_A Zinc finger protein 473 42.3 9.2 0.00032 22.0 1.1 17 240-256 10-26 (46)
326 2cpw_A CBL-interacting protein 42.1 21 0.00072 23.3 3.0 23 32-54 34-59 (64)
327 2epq_A POZ-, at HOOK-, and zin 42.0 37 0.0013 19.0 4.0 29 221-249 14-45 (45)
328 2cot_A Zinc finger protein 435 42.0 37 0.0013 21.7 4.4 36 221-256 22-60 (77)
329 2crn_A Ubash3A protein; compac 41.2 28 0.00095 22.7 3.5 25 32-56 24-51 (64)
330 2ct1_A Transcriptional repress 40.7 33 0.0011 22.0 3.9 36 221-256 19-59 (77)
331 1vg5_A RSGI RUH-014, rhomboid 40.5 24 0.00081 23.8 3.1 23 31-53 43-67 (73)
332 2cor_A Pinch protein; LIM doma 39.9 22 0.00076 23.7 3.0 55 177-235 16-71 (79)
333 2dlk_A Novel protein; ZF-C2H2 39.8 48 0.0017 21.0 4.7 30 223-252 46-78 (79)
334 1x64_A Alpha-actinin-2 associa 39.4 16 0.00055 25.0 2.2 57 177-236 26-83 (89)
335 2wbt_A B-129; zinc finger; 2.7 39.2 18 0.00063 25.9 2.7 35 222-256 79-114 (129)
336 3sxm_A Transcriptional regulat 39.1 36 0.0012 24.7 4.3 30 26-55 98-127 (140)
337 2lcq_A Putative toxin VAPC6; P 38.8 8.2 0.00028 30.1 0.6 23 221-252 136-158 (165)
338 2d8x_A Protein pinch; LIM doma 38.2 15 0.00052 23.7 1.8 58 177-237 6-64 (70)
339 2xcb_A PCRH, regulatory protei 37.3 1E+02 0.0035 21.9 6.7 17 36-52 27-43 (142)
340 3c1q_A General secretion pathw 36.9 16 0.00054 26.5 1.9 17 31-47 51-68 (123)
341 2cwb_A Chimera of immunoglobul 36.9 14 0.00048 27.0 1.6 24 30-53 80-105 (108)
342 2ko5_A Ring finger protein Z; 36.9 12 0.0004 26.7 1.1 35 216-253 38-72 (99)
343 2csh_A Zinc finger protein 297 36.8 39 0.0013 23.2 4.1 35 221-255 41-78 (110)
344 1lv3_A Hypothetical protein YA 36.7 12 0.00042 24.9 1.1 14 241-254 8-21 (68)
345 1elw_A TPR1-domain of HOP; HOP 36.7 87 0.003 20.4 6.3 13 40-52 51-63 (118)
346 3gyz_A Chaperone protein IPGC; 36.5 1.1E+02 0.0038 22.7 6.9 50 38-92 47-96 (151)
347 2gvi_A Conserved hypothetical 36.3 12 0.0004 30.5 1.2 45 188-234 157-202 (204)
348 2epr_A POZ-, at HOOK-, and zin 35.5 58 0.002 18.5 4.1 30 221-250 16-48 (48)
349 2kdx_A HYPA, hydrogenase/ureas 35.2 14 0.00049 27.1 1.4 22 221-251 77-99 (119)
350 1ncs_A Peptide M30F, transcrip 35.1 19 0.00066 20.8 1.8 18 240-257 16-35 (47)
351 3sz7_A HSC70 cochaperone (SGT) 34.4 1.1E+02 0.0039 22.1 6.6 52 37-93 21-72 (164)
352 1gh9_A 8.3 kDa protein (gene M 34.0 16 0.00056 24.5 1.4 21 240-261 19-39 (71)
353 2v3b_B Rubredoxin 2, rubredoxi 33.9 6.5 0.00022 25.1 -0.6 10 242-251 36-45 (55)
354 2eln_A Zinc finger protein 406 33.7 19 0.00066 20.5 1.6 17 240-256 7-25 (38)
355 1vek_A UBP14, ubiquitin-specif 33.6 41 0.0014 23.2 3.5 25 32-56 44-71 (84)
356 3u3w_A Transcriptional activat 33.2 1.9E+02 0.0066 23.3 8.6 87 7-94 46-143 (293)
357 2vgx_A Chaperone SYCD; alterna 33.1 1.4E+02 0.0047 21.6 8.3 13 39-51 33-45 (148)
358 1sp2_A SP1F2; zinc finger, tra 33.0 17 0.00057 18.5 1.1 15 242-256 2-18 (31)
359 2vyi_A SGTA protein; chaperone 32.5 1.1E+02 0.0037 20.3 6.7 17 37-53 22-38 (131)
360 3izc_k 60S ribosomal protein R 32.4 12 0.00042 26.8 0.6 39 72-110 56-96 (100)
361 1x4l_A Skeletal muscle LIM-pro 31.8 20 0.0007 23.2 1.6 57 177-235 6-66 (72)
362 1va1_A Transcription factor SP 31.3 23 0.00077 19.1 1.6 17 240-256 6-24 (37)
363 3hym_B Cell division cycle pro 31.1 2E+02 0.0068 22.9 8.8 55 39-93 205-263 (330)
364 2ho1_A Type 4 fimbrial biogene 31.1 1.2E+02 0.004 23.5 6.5 52 38-94 82-133 (252)
365 2j7j_A Transcription factor II 31.0 45 0.0016 21.3 3.4 32 223-255 39-74 (85)
366 1vq8_Z 50S ribosomal protein L 31.0 20 0.00069 24.8 1.5 12 240-251 25-36 (83)
367 1ffk_W Ribosomal protein L37AE 30.9 32 0.0011 23.2 2.5 22 230-251 15-36 (73)
368 1aip_C EF-TS, elongation facto 30.5 41 0.0014 27.2 3.5 20 34-53 21-42 (196)
369 3q87_A Putative uncharacterize 29.6 12 0.00042 28.0 0.2 19 240-258 97-115 (125)
370 1na0_A Designed protein CTPR3; 29.6 1.2E+02 0.0041 19.8 6.7 14 39-52 21-34 (125)
371 2dlo_A Thyroid receptor-intera 29.4 35 0.0012 22.6 2.6 58 176-236 15-74 (81)
372 1zfd_A SWI5; DNA binding motif 29.3 28 0.00095 17.7 1.7 15 242-256 3-19 (32)
373 2vq2_A PILW, putative fimbrial 29.2 1.4E+02 0.0046 22.3 6.5 85 3-94 20-105 (225)
374 2ab3_A ZNF29; zinc finger prot 29.0 20 0.00069 17.5 1.0 14 242-255 2-17 (29)
375 4gco_A Protein STI-1; structur 28.9 1.5E+02 0.0051 20.7 6.6 15 38-52 24-38 (126)
376 2iyb_E Testin, TESS, TES; LIM 28.8 11 0.00037 24.2 -0.2 56 178-235 4-64 (65)
377 1l8d_A DNA double-strand break 28.5 18 0.0006 26.1 0.9 13 242-254 47-59 (112)
378 1x62_A C-terminal LIM domain p 28.2 17 0.0006 24.2 0.8 59 176-237 15-74 (79)
379 1xb2_B EF-TS, elongation facto 27.7 44 0.0015 28.8 3.4 20 33-52 21-42 (291)
380 1dl6_A Transcription factor II 27.4 24 0.00083 22.5 1.3 9 221-229 34-42 (58)
381 1zfo_A LAsp-1; LIM domain, zin 27.3 37 0.0013 18.5 2.0 25 176-200 3-27 (31)
382 2epp_A POZ-, at HOOK-, and zin 27.2 24 0.00082 23.0 1.3 17 240-256 11-27 (66)
383 3hkz_Y DNA-directed RNA polyme 26.9 51 0.0017 23.0 3.0 40 22-61 38-79 (104)
384 2lbc_A Ubiquitin carboxyl-term 26.7 59 0.002 23.9 3.6 24 33-56 19-45 (126)
385 1lko_A Rubrerythrin all-iron(I 26.3 16 0.00055 29.3 0.4 8 244-251 173-180 (191)
386 2ctu_A Zinc finger protein 483 26.1 27 0.00092 21.8 1.4 14 242-255 18-31 (73)
387 1x68_A FHL5 protein; four-and- 26.0 10 0.00035 25.1 -0.7 57 177-235 6-66 (76)
388 4gcn_A Protein STI-1; structur 26.0 1.7E+02 0.0058 20.4 7.3 56 38-94 53-111 (127)
389 2d8z_A Four and A half LIM dom 25.9 46 0.0016 21.2 2.6 57 177-236 6-63 (70)
390 2gqj_A Zinc finger protein KIA 25.7 26 0.00087 24.0 1.3 14 240-253 22-35 (98)
391 3ro2_A PINS homolog, G-protein 25.7 1.6E+02 0.0053 23.4 6.5 92 2-94 16-111 (338)
392 2ghf_A ZHX1, zinc fingers and 25.6 57 0.0019 23.0 3.2 36 221-256 22-64 (102)
393 3uq3_A Heat shock protein STI1 25.5 1.6E+02 0.0054 22.4 6.3 88 3-94 17-107 (258)
394 3as5_A MAMA; tetratricopeptide 24.9 1.9E+02 0.0063 20.5 7.7 83 4-93 21-103 (186)
395 2ej4_A Zinc finger protein ZIC 24.7 34 0.0011 22.8 1.8 14 243-256 63-76 (95)
396 3gw4_A Uncharacterized protein 24.7 2.1E+02 0.0071 20.9 8.2 90 1-95 2-95 (203)
397 3r8n_T 30S ribosomal protein S 24.6 77 0.0026 21.9 3.6 29 31-59 30-58 (85)
398 2j9u_B VPS36, vacuolar protein 24.5 40 0.0014 22.9 2.0 36 199-234 14-57 (76)
399 2y4t_A DNAJ homolog subfamily 24.4 1E+02 0.0036 26.3 5.4 57 36-93 266-322 (450)
400 1pft_A TFIIB, PFTFIIBN; N-term 24.3 39 0.0013 20.5 1.9 17 241-257 23-39 (50)
401 2fo7_A Synthetic consensus TPR 24.1 1.6E+02 0.0054 19.4 6.3 84 3-94 13-97 (136)
402 3ulq_A Response regulator aspa 24.1 50 0.0017 28.1 3.2 15 3-17 24-38 (383)
403 2xpi_A Anaphase-promoting comp 23.9 1.7E+02 0.006 26.0 7.1 14 128-141 563-576 (597)
404 3d00_A Tungsten formylmethanof 23.7 25 0.00084 28.3 1.0 31 193-232 155-185 (191)
405 3q49_B STIP1 homology and U bo 23.5 1.8E+02 0.0061 19.8 6.6 13 40-52 56-68 (137)
406 3q15_A PSP28, response regulat 23.3 56 0.0019 27.8 3.4 18 75-92 110-127 (378)
407 3sxy_A Transcriptional regulat 22.7 82 0.0028 25.0 4.1 29 27-55 174-202 (218)
408 3mv2_B Coatomer subunit epsilo 22.5 1.1E+02 0.0039 26.2 5.1 49 40-91 113-161 (310)
409 3iko_C Nucleoporin NUP84; NPC, 22.5 58 0.002 29.8 3.4 26 30-55 180-205 (460)
410 3ihu_A Transcriptional regulat 22.4 83 0.0028 25.1 4.1 25 71-95 187-211 (222)
411 3uq3_A Heat shock protein STI1 21.8 2.6E+02 0.009 21.1 8.2 51 38-93 150-200 (258)
412 3j21_i 50S ribosomal protein L 21.7 36 0.0012 23.6 1.4 12 240-251 33-44 (83)
413 1hh8_A P67PHOX, NCF-2, neutrop 21.6 2.5E+02 0.0086 20.8 6.9 14 39-52 49-62 (213)
414 2ra1_A Surface layer protein; 21.5 89 0.003 28.0 4.2 38 23-60 169-206 (412)
415 3ieg_A DNAJ homolog subfamily 21.4 1.3E+02 0.0045 24.3 5.3 57 37-94 244-300 (359)
416 3pwf_A Rubrerythrin; non heme 21.2 40 0.0014 26.5 1.8 7 244-250 155-161 (170)
417 2dar_A PDZ and LIM domain prot 21.1 83 0.0028 21.2 3.3 58 176-236 25-83 (90)
418 3gw4_A Uncharacterized protein 21.0 2.5E+02 0.0084 20.5 7.6 58 37-94 76-135 (203)
419 1tf6_A Protein (transcription 20.9 1.1E+02 0.0039 23.1 4.5 12 243-254 162-176 (190)
420 2vqe_T 30S ribosomal protein S 20.8 1.1E+02 0.0037 22.1 3.9 30 31-60 37-66 (106)
421 2yuc_A TNF receptor-associated 20.4 6.8 0.00023 26.1 -2.6 34 223-256 23-58 (76)
422 2di3_A Bacterial regulatory pr 20.3 1.1E+02 0.0036 24.7 4.3 22 73-94 199-220 (239)
423 2l6j_A TPR repeat-containing p 20.3 1.8E+02 0.0063 18.7 5.7 54 36-94 13-66 (111)
424 1m45_B IQ2, IQ2 motif from MYO 20.2 49 0.0017 17.0 1.3 16 82-97 2-17 (26)
425 1hw1_A FADR, fatty acid metabo 20.2 94 0.0032 24.9 4.0 23 72-94 195-217 (239)
426 1x6h_A Transcriptional repress 20.2 41 0.0014 21.7 1.5 13 242-254 15-27 (86)
427 3ro3_A PINS homolog, G-protein 20.0 1.8E+02 0.006 19.9 5.2 58 37-94 59-117 (164)
No 1
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.21 E-value=7.5e-12 Score=84.83 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=49.3
Q ss_pred eeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 202 KLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
.|+||||++.|.+ ||++ ++||||++++|++|.+++ + +||.|++..+.+|++++++
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~-~--~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDT-G--NDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHH-S--BCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhC-C--CCcCCcCCCChhhcEECcc
Confidence 5899999999997 9998 999999999999999753 2 6999999999999998875
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.14 E-value=3.3e-11 Score=87.17 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
...|+||||++.|.+ ||+++|||+|++.+|.+|..+ ..+||.|++.+..++++..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCChHhcchH
Confidence 467899999999999 999999999999999999874 3699999999998887654
No 3
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.08 E-value=5.3e-11 Score=88.72 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
...|+||||++.|.+ ||++||||+|++.+|.+|... ..+||.|++.+...+++.-
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLN---SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTS---CSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHc---CCCCCCCCCCCChhhceEC
Confidence 467999999999999 999999999999999999752 4699999999998887654
No 4
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=9.3e-11 Score=86.34 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=47.6
Q ss_pred CCeeeecccccccCCCCCCeecC-CCceecHHHHHHHHHhC---CCceecCC--CCcc-cCccccee
Q 024742 200 HSKLVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKN---NGKITCPR--TGLV-CNYSDLVK 259 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~-cGhv~~~~~~~~~~~~~---~~~~~CP~--c~~~-~~~~~~~~ 259 (263)
...|+||||++.|.+ ||++| |||+|++.||.+|...+ .+.++||. |++. +...+++.
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 456899999999998 99996 99999999999998753 34689999 7766 77777654
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.06 E-value=1.2e-10 Score=95.49 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=48.9
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
+.|+||||++.|.+ ||++||||+|++.||.++...++ . .||.|++.+..++++.-
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~-~-tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVG-H-FDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTC-S-BCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCC-C-CCCCCcCCCChhhCcch
Confidence 57899999999999 99999999999999999987543 3 79999999998887764
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.04 E-value=1.1e-10 Score=86.60 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=48.8
Q ss_pred CCeeeecccccccCCCCCCeecCCC-ceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNG-YVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cG-hv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
...|+|||+++.|.+ ||+++|| |+|++.+|.+|... ..+||.|++.+...+++..
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCChhhceEc
Confidence 357899999999999 9999999 99999999999863 3699999999998887654
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.02 E-value=2.7e-10 Score=80.58 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=48.8
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
.+.|.|||+.+.+.+ |++++|||+|++.+|.+|.++ +..+||.|++.+..+++..-
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHH--CcCCCCCCcCCCChhhCccC
Confidence 467899999999988 999999999999999999863 35799999999998877653
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.2e-10 Score=81.21 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=52.9
Q ss_pred cCCeeeecccccccCCCC-CCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 199 HHSKLVCYITKELMDTEN-PPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n-~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
....+.|||..+.+++.+ .|++++|||+|+..++.+|.+...+..+||.|.+.+...++..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHH
Confidence 456788999999997655 49999999999999999998865556899999999998887655
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5e-10 Score=78.04 Aligned_cols=57 Identities=14% Similarity=0.385 Sum_probs=48.9
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccce
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~ 258 (263)
....+.|||..+.+.+ |++++|||+|+..+|.+|.+...+..+||.|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 3456899999999886 99999999999999999976434568999999999988864
No 10
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.91 E-value=5.5e-10 Score=75.59 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=49.3
Q ss_pred eeeecccccccCC----CCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 202 KLVCYITKELMDT----ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 202 ~~~Cpi~~~~~~~----~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
.+.|||..+.+.+ ...+++++|||+|+..++.+|.++ ..+||.|.+.+..++++++||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCccceeeeeC
Confidence 3578888888754 345688999999999999999875 359999999999999999996
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.90 E-value=9.5e-10 Score=76.09 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=50.4
Q ss_pred CCeeeecccccccCC----CCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 200 HSKLVCYITKELMDT----ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~----~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
...+.|||..+.+.+ ...+++++|||+|+..+|.+|.++. .+||.|.+.+..++++++||
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---CCCCCCCCccChhheeeccC
Confidence 345678888888754 3455889999999999999998753 59999999999999999996
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=4e-09 Score=75.26 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=50.4
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhC---CCceecCCCCcccCcccceecc
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKN---NGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~---~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
...+.|||..+.+.+ |+++||||+|++.+|.+|.... .+..+||.|.+.+..+++++-+
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 456789999999877 8999999999999999998752 3468999999999998887654
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.8e-09 Score=76.11 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=50.8
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHh---CCCceecCCCCcccCcccceecc
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKK---NNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~---~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
....+.|||..+.+.+ |+++||||+|++.++.+|.+. ..+..+||.|.+.+..+++.+-+
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred ccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 3456899999999876 899999999999999999865 34568999999999998887654
No 14
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=1.9e-09 Score=93.76 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=47.5
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
+.|.||||.+.|.+ ||++||||+||+.||.++...++ ..||.|++.++.++++.
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~--~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCC--CCCcCCCCCCchhcCcc
Confidence 67899999999999 99999999999999999987543 24999999999887664
No 15
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.7e-09 Score=72.22 Aligned_cols=54 Identities=9% Similarity=0.162 Sum_probs=46.4
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccc
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~ 257 (263)
..+.+.|||..+.+.+ |++++|||+|++.+|.+|.+ .+..+||.|++.+..+++
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLS--SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHT--TSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHH--hCcCCCCCCCcCCChhhc
Confidence 3567899999999977 89899999999999999985 245699999999988764
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.81 E-value=9.1e-10 Score=77.83 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=50.2
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhC----CCceecCCCCcccCcccceecc
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKN----NGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~----~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
....+.|||..+.+.+ |+++||||+|++.+|.+|.+.. .+..+||.|.+.+...++++-+
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 72 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCS
T ss_pred cccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCH
Confidence 4567899999999977 8999999999999999987532 2468999999999988876544
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=3.5e-09 Score=72.11 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=47.1
Q ss_pred eeeccccc-ccCCC-CCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 203 LVCYITKE-LMDTE-NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 203 ~~Cpi~~~-~~~~~-n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
+.|||..+ .+.+. .++++++|||+|+..+|.+|..+ +..+||.|++.+..++++.++|
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEEECC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccccceeecc
Confidence 56888888 66542 23467999999999999999653 3569999999999999998875
No 18
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=5.5e-09 Score=70.63 Aligned_cols=48 Identities=17% Similarity=0.494 Sum_probs=41.3
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCC
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRT 248 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c 248 (263)
.....+.|||..+.+.+ |++++|||+|++.+|.+|.+..++..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34566899999999887 9999999999999999998765567899998
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=3.4e-09 Score=79.89 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=48.9
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
..+.|||+.+.+.+ |+++||||+|+..||.+|.....+..+||.|.+.+...++.+.
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 45689999998876 8999999999999999998765556899999999998887654
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.78 E-value=5.4e-09 Score=76.12 Aligned_cols=55 Identities=24% Similarity=0.467 Sum_probs=45.8
Q ss_pred CCeeeecccccccCCCCCCeecC-CCceecHHHHHHHHHhCCCceecCCCCccc-Ccccce
Q 024742 200 HSKLVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGLVC-NYSDLV 258 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~-cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~-~~~~~~ 258 (263)
...+.|||+.+.+.+ |+++| |||+|++.+|.+|.... +...||.|.+.+ ..+++.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHC-TTCCCTTTCCSSCCTTSCE
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhc-CCCcCcCCCCcCCCccccC
Confidence 456899999999987 99999 99999999999998643 357999999998 444443
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=75.63 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=49.4
Q ss_pred CCeeeecccccccCCCCCCee-cCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 200 HSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~-l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
...+.|||..+.+.+ |+. ++|||+|+..||.+|.+... ..||.|...+..+++++..
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQR--AQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECT
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCc--CCCCCCCCcCCHHHhHhhH
Confidence 355789999999987 898 99999999999999987542 6999999999999988764
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=71.68 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=44.9
Q ss_pred CCeeeecccccccCCCCCCeecC-CCceecHHHHHHHHHhCCCceecCCCCcccCccc
Q 024742 200 HSKLVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~-cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~ 256 (263)
...+.|||..+.+.+ |+++| |||+|++.+|.+|.+.. +..+||.|.+.+...|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCCCcc
Confidence 456789999999987 99999 99999999999998753 3579999999866544
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=9e-09 Score=79.52 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCeeeecccccccCC----CCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcc
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDT----ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 251 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~~~Cpi~~~~~~~----~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~ 251 (263)
+..||+|...+..- ++...+...+.+.|||..+.+.+ ...++.++|||+|+..+|.+|.+.. ..||.|...
T Consensus 48 ~~~CP~Cr~~~~~~--~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~ 122 (133)
T 4ap4_A 48 ANTCPTCRKKINHK--RYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKK 122 (133)
T ss_dssp CSBCTTTCCBCTTT--CEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---SBCTTTCCB
T ss_pred CCCCCCCCCcCccc--cccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---CCCCCCCCc
Confidence 35799998876422 22222444567889999998865 3445889999999999999998753 499999999
Q ss_pred cCcccceeccc
Q 024742 252 CNYSDLVKAYI 262 (263)
Q Consensus 252 ~~~~~~~~v~~ 262 (263)
+..++++++|+
T Consensus 123 ~~~~~~~~~~~ 133 (133)
T 4ap4_A 123 INHKRYHPIYI 133 (133)
T ss_dssp CCGGGEEEECC
T ss_pred CChhcceeeeC
Confidence 99999999996
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.2e-08 Score=69.58 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=47.1
Q ss_pred cCCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 199 HHSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
....+.|||..+.+.+ |+++ +|||+|+..+|.+|.+. ..+||.|.+.+...+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcccccc
Confidence 3456899999999887 8876 99999999999999864 369999999999888754
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=77.19 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=42.0
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..+.|||+.+.+.+ |+++||||+|++.||.+|... +...||.|.+.+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRA--QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhH--CcCCCCCCCccCCC
Confidence 34678888888886 999999999999999999862 34699999999987
No 26
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.4e-08 Score=87.36 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=49.3
Q ss_pred cCCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCC--CCcccCccccee
Q 024742 199 HHSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPR--TGLVCNYSDLVK 259 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~--c~~~~~~~~~~~ 259 (263)
...-|.||||++.|.+ ||.. .|||+|++.||.++.+. ++..+||. |.+.+...+++.
T Consensus 178 ~~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 178 GKIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECGGGEEE
T ss_pred CceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCchhhCCc
Confidence 5677899999999999 9984 99999999999999764 45689999 999999888753
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.59 E-value=5.7e-08 Score=74.14 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 197 KQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 197 ~~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
-...+.+.|||..+.+.+ |+.++|||+|++.+|.+|.+.+. .+||.|...+..+++.+
T Consensus 13 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 13 PPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFP 70 (118)
T ss_dssp SCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEE
T ss_pred cCCCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCC--CCCCCCCCCcCHHhccc
Confidence 455677899999999987 89999999999999999987532 39999999999887654
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.58 E-value=4.4e-08 Score=72.31 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=46.5
Q ss_pred CCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 200 HSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
...+.|||+.+.+.+ |+++ +|||+|+..||.+|... ..+||.|+..+...++.+-
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 20 DDLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEEC
T ss_pred CCCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCChhhCCcC
Confidence 345789999999987 8887 99999999999999863 3699999999998777653
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-08 Score=65.35 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=39.2
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCC
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRT 248 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c 248 (263)
....+.|||..+.+.+ |++++|||+|++.+|.+|.....+..+||.|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999977 8999999999999999996533456799988
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.3e-08 Score=70.55 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=45.2
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
..+.|||..+.+.+ |+++||||+|+..+|.+|... ..+||.|.+.+..+++++
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWL---GKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTC---SSBCSSSCCBCCHHHHSC
T ss_pred CCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHC---CCcCcCcCchhCHhhccC
Confidence 45789999998876 899999999999999998753 269999999999877665
No 31
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.4e-08 Score=69.10 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=41.6
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
..+.|||..+.+.+ |+++||||+|+..+|.+|.+. ..+||.|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRA---TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence 45789999999977 999999999999999999864 359999999986
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.56 E-value=3.1e-08 Score=77.78 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=39.3
Q ss_pred eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 203 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
+.|||+.+.+.+ |+++||||+|+..||.+|... ..+||.|.+.+...
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR---KIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT---CSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHHHHHc---CCcCCCCCCcCCCC
Confidence 468888888876 999999999999999999753 46899999987643
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.56 E-value=5.1e-08 Score=63.76 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=41.3
Q ss_pred CeeeecccccccC-CCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 201 SKLVCYITKELMD-TENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 201 s~~~Cpi~~~~~~-~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
+...|||..+.+. +++++++++|||+|+..+|.+|.+.+ .+||.|.+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCCCCCcCC
Confidence 3467999998884 45678899999999999999998754 69999998764
No 34
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.53 E-value=7.2e-08 Score=76.84 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=43.2
Q ss_pred eeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 202 KLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
.+.|||+.+.+.+ |+++||||+||+.||.+|... +.+.||.|...+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHh--CCCcCCCCCccCCCC
Confidence 4689999998887 999999999999999999864 446999999999877
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.51 E-value=5.2e-08 Score=68.59 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
....+.|||..+.+.+....++++|||+|+..+|.+|.+. ..+||.|.+.+...++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---CCcCcCcCCccCCcccCC
Confidence 3456789999999987777788999999999999999853 259999999998877653
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.51 E-value=9.1e-08 Score=72.65 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=48.0
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
+...+.|||..+.+.+ |+.++|||+|+..+|.+|.+.. ..+||.|...+...++.+
T Consensus 20 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 20 FVKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVM--GSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCBC
T ss_pred ccCCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCHhhccc
Confidence 3456889999999987 9999999999999999998753 358999999999888654
No 37
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=2.4e-07 Score=63.55 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=44.7
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
.....|||..+.+.....++.+||||+|+..+|.+|.+.+ .+||.|...+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---KKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---CCCcCcCccccCc
Confidence 3456799999999877788999999999999999998753 3799999887653
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.45 E-value=1.2e-07 Score=71.05 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 200 HSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
...+.|||+.+.+.+ |+.+ +|||+|+..||.+|.+. ..+||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh---CCcCcCCCcccccc
Confidence 345789999999987 8887 99999999999999863 27999999998865
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.44 E-value=9.3e-08 Score=73.73 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=49.4
Q ss_pred CeeeecccccccCC----CCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 201 SKLVCYITKELMDT----ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 201 s~~~Cpi~~~~~~~----~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
+.+.|||..+.+++ ...+++++|||+|+..+|.+|.++ ..+||.|++.+...++.++|+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---CSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---CCCCCCCCCcCcccccccccc
Confidence 45789999988865 233489999999999999999863 249999999999999988875
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.38 E-value=2.4e-07 Score=74.77 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=43.7
Q ss_pred cCCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 199 HHSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
....+.|||+.+.+.+ |+++ +|||+||..||.+|.+. +..+||.|+..+...
T Consensus 51 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 51 LHSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRS--GNKECPTCRKKLVSK 103 (165)
T ss_dssp CHHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCCSG
T ss_pred CCCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCCCc
Confidence 3566899999999987 8876 99999999999999874 246899999998543
No 41
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.3e-07 Score=63.34 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCeeeecccccccCC----CCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 200 HSKLVCYITKELMDT----ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~----~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
...+.|||..+.+.+ .+.+++++|||+|+..+|.+|.+. ..+||.|.+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence 456778888888754 344588999999999999999875 3599999988753
No 42
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.36 E-value=2.8e-07 Score=66.98 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=44.3
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
.....|||..+.+.+.+.++.+||||+|+..||.+|.+. ...||.|...+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---CCcCcCcCccCCC
Confidence 345789999999988888889999999999999999863 3499999988753
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.35 E-value=1.2e-07 Score=71.93 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=42.7
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..-+.|||+.+.+.+ |++++|||+|+..||.+|..+ +..+||.|.+.+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCT--TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhH--CcCCCCCCCcccCc
Confidence 345889999999987 999999999999999998643 35799999999864
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.35 E-value=2.2e-07 Score=60.66 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=42.0
Q ss_pred CeeeecccccccCCCCCCeecC-CCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 201 SKLVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~-cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
....|||..+.+.++..++.+| |||+|...+|.+|.++ ..+||.|.+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence 3457999999998878888887 9999999999999753 358999998764
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=6.6e-08 Score=73.66 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCeeeecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 200 HSKLVCYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
...+.|||+.+.+.+ |+++ +|||+|++.||.+|.. .+||.|...+...+++.
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCC
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccc
Confidence 345789999999977 8998 9999999999999864 68999999998877664
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=3e-07 Score=64.16 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 200 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
.....|||..+.+.+.+..+.+||||+|+..+|.+|.+.+ .+||.|...+..+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---RTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---SSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---CcCcCcCCcCCCC
Confidence 3457899999999886767889999999999999998753 4899999887654
No 47
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.32 E-value=1.7e-07 Score=65.58 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=42.5
Q ss_pred CeeeecccccccCCCCCCeecCCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceecccC
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 263 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~~ 263 (263)
..+.|+|..+...+ |+++||||+ ++..++.+| .+||.|.+.+. ...+||++
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~--~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-------DKCPMCYTVIT--FKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-------SBCTTTCCBCS--EEEECBC-
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-------ccCCCcCcCcc--CcEEEeeC
Confidence 34679999988776 899999999 999999877 59999999876 56888874
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=6.9e-07 Score=62.04 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=42.3
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
....|||..+.+.+....+++||||+|+..+|.+|.+.. .+||.|.+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---CcCCCcCccccc
Confidence 345799999998876666778999999999999998753 389999988753
No 49
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.7e-07 Score=63.91 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=41.9
Q ss_pred CeeeecccccccCCCCCCeecCCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceecccC
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 263 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~~ 263 (263)
..+.|||..+...+ |+++||||+ ++..++.++ .+||.|.+.+. +..+||++
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~--~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-------DKCPMCYTVIT--FKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC-------SBCTTTCCBCC--CCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC-------CCCccCCceec--CcEEEecC
Confidence 45679999888766 999999999 999999643 58999999875 46888874
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.28 E-value=5.9e-07 Score=72.69 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=48.8
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
...+.|.|||..+.+.+ |+.++|||+|++.+|.+|.+.+. .+||.|...+..+++.+
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCC--CCCCCCccCcchhhhhh
Confidence 45577899999999987 99999999999999999986432 49999999999887654
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.24 E-value=1.5e-07 Score=62.20 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=39.5
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCccc
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~ 256 (263)
..+.|||..+.+.+ |+++||||+|+..++.+ ...+||.|.+.+...+
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~------~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEA------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSS------SSSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHcc------CCCCCCcCCcEeecCC
Confidence 45679999988876 89999999999999976 2469999999987654
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.24 E-value=6.4e-07 Score=61.08 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=38.4
Q ss_pred eeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 202 KLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
...|||..+.+. ++++++||||+|+..++.+|.+++ .+||.|...+.
T Consensus 5 ~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHS---CSTTTTCCCCC
T ss_pred CCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCc---CcCcCCChhhH
Confidence 346888888765 355889999999999999998753 59999998876
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.19 E-value=1.9e-06 Score=60.82 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=43.3
Q ss_pred CCeeeecccccccCCCCCCeec--CCCceecHHHHHHHHHhCCCceecCCCCcccCcccce
Q 024742 200 HSKLVCYITKELMDTENPPQVL--PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 200 ~s~~~Cpi~~~~~~~~n~p~~l--~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~ 258 (263)
..-+.|||..+.++..+ +.++ +|||.|++.++.++... +...||.|.+.+....+.
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccCCCchh
Confidence 45578999999886533 3444 49999999999998642 457999999999877654
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2e-07 Score=64.06 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=44.9
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
....+.|||..+.+.+ +++||||+|+..++.+|.+ ...+||.|.+.+...+...+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD---RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC---CCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH---CcCcCCCcCCcccCCCcccc
Confidence 3456789999988866 8899999999999999964 35799999999887765544
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.14 E-value=4.6e-07 Score=71.41 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=43.9
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
...+.|.|||+.+.+.+ |+.++|||+|++.||.+|.+. +..+||.|.+....
T Consensus 27 ~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSS--GPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGG--SCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhc--CCCCCCCCCCcccc
Confidence 34577899999999988 899999999999999999753 34799999986543
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.12 E-value=2.9e-06 Score=63.93 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=29.9
Q ss_pred ecCCCceecHHHHHHHHHhC--CCceecCCCCcccCcc
Q 024742 220 VLPNGYVYSTKALEEMAKKN--NGKITCPRTGLVCNYS 255 (263)
Q Consensus 220 ~l~cGhv~~~~~~~~~~~~~--~~~~~CP~c~~~~~~~ 255 (263)
+++|||+|+..||.+|...+ ....+||.|...|...
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 78999999999999998643 2457999999988643
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.11 E-value=1.9e-06 Score=58.22 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=41.9
Q ss_pred eeecccccccCCCCCCeec--CCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceecccC
Q 024742 203 LVCYITKELMDTENPPQVL--PNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 263 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l--~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~~ 263 (263)
..|+|..+...+ ++++ ||||+ ++..++.++.+.+ .+||.|.+.+ .++.++|++
T Consensus 8 ~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i--~~~i~i~~s 63 (63)
T 2vje_B 8 KPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAG---ASCPICKKEI--QLVIKVFIA 63 (63)
T ss_dssp SBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTT---CBCTTTCCBC--CEEEEEEEC
T ss_pred CCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhC---CcCCCcCchh--hceEEEecC
Confidence 357777776554 6666 99998 9999999997532 5999999987 578999874
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=61.67 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=39.9
Q ss_pred ecccccccCCCCCCeec-CCCceecHHHHHHHHHhCCCceecCCCCcccCcccce
Q 024742 205 CYITKELMDTENPPQVL-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 205 Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~ 258 (263)
|||..+...++..++++ +|||+|...+|.+|.+.+ .+||.|.+.+...++-
T Consensus 29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~~~~g 80 (81)
T 2ecl_A 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---NRCPLCQQDWVVQRIG 80 (81)
T ss_dssp CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---CBCTTTCCBCCEEEEE
T ss_pred CcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---CCCCCcCCCcchhhcC
Confidence 77777766666656665 599999999999998643 4999999999877653
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.06 E-value=2.5e-06 Score=57.77 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=41.4
Q ss_pred eeecccccccCCCCCCeec--CCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceecccC
Q 024742 203 LVCYITKELMDTENPPQVL--PNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 263 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l--~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~~ 263 (263)
-.|+|..+...+ ++++ ||||+ ++.+++.+|.+. ..+||.|.+.+ .++.++|+.
T Consensus 9 ~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i--~~~i~i~~~ 64 (64)
T 2vje_A 9 EPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKR---NKPCPVCRQPI--QMIVLTYFP 64 (64)
T ss_dssp SCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHT---TCCCTTTCCCC--CEEEEEECC
T ss_pred CCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHc---CCcCCCcCcch--hceEeeecC
Confidence 357777766544 6766 99999 899999999753 24899999987 578999874
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.02 E-value=2.9e-06 Score=77.14 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=45.1
Q ss_pred eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceec
Q 024742 203 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 260 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v 260 (263)
..|||+.+...+ |+++||||++|..|+.+|... +..+||.|...+...+...|
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEECSC
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCceeEec
Confidence 789999988866 999999999999999999763 24699999999988766554
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.91 E-value=4.1e-06 Score=61.03 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=43.7
Q ss_pred CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHh----CC-CceecCC--CCcc--cCcccceec
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKK----NN-GKITCPR--TGLV--CNYSDLVKA 260 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~----~~-~~~~CP~--c~~~--~~~~~~~~v 260 (263)
..+.|||..+...+.+...+.+|||.|+++++.+..+. +. ..++||. |+.. +..++++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 45789999988876322223489999999999988753 21 3589999 9999 777666543
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.81 E-value=1.5e-05 Score=59.58 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccc
Q 024742 216 NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 216 n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~ 257 (263)
.+.++++|||+|...+|.+|.+. ...||.|.+.|.+.+.
T Consensus 66 ~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~~~~ 104 (106)
T 3dpl_R 66 CTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQKY 104 (106)
T ss_dssp CCEEEETTSCEEEHHHHHHHHTT---CSBCSSSCSBCCEEEC
T ss_pred ceEeecccCcEECHHHHHHHHHc---CCcCcCCCCcceeecC
Confidence 34567899999999999999863 4689999999877654
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.77 E-value=7.4e-06 Score=57.89 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=39.4
Q ss_pred eeeecccccccCCCCCCeecCCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 202 KLVCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~l~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
...|+|..+...+ |+++||||+ ++..++.++ .+||.|...+.. ..++|+
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~--~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH--VQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE--EEECBC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC--eEEEEe
Confidence 3468888777665 899999999 999999866 299999998765 567765
No 64
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.63 E-value=3.6e-05 Score=76.88 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=47.0
Q ss_pred CeeeecccccccCCCCCCeecCCC-ceecHHHHHHHHHhCCCceecCCCCcccCccccee
Q 024742 201 SKLVCYITKELMDTENPPQVLPNG-YVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cG-hv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~ 259 (263)
+-|.||||++.|.+ ||++|.| ++|.|.+|++|... + -+||.|++..+.++++.
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~-~--~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLS-D--STDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-C--CBCTTTCCBCCGGGCEE
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhc-C--CCCCCCCCCCCcccccc
Confidence 57899999999999 9999998 69999999999864 2 48999999999888764
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.63 E-value=9.3e-06 Score=73.03 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=42.4
Q ss_pred CeeeecccccccCCCCCCeecCCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceecccC
Q 024742 201 SKLVCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 263 (263)
Q Consensus 201 s~~~Cpi~~~~~~~~n~p~~l~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~~ 263 (263)
..+.|||+.+...+ |+++||||+ +|..|+.++ .+||.|...+. ...+||++
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~--~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-------RKCPICRGIIK--GTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-------SBCTTTCCBCC--EEEECC--
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-------CcCCCCCCCcc--CeEEeecC
Confidence 34789999999887 999999999 999999876 48999999875 56788764
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=2.5e-05 Score=53.47 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=38.4
Q ss_pred eeeecccccccCCCCCCeecCCCce-ecHHHHHHHHHhCCCceecCCCCcccCcccceeccc
Q 024742 202 KLVCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 262 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~l~cGhv-~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~~ 262 (263)
...|+|..+...+ ++++||||+ ++..++.++ .+||+|.+.+.. +.+||.
T Consensus 15 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-------~~CP~CR~~i~~--~~~i~~ 64 (68)
T 2ea5_A 15 SKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKYF-------QQCPMCRQFVQE--SFALSG 64 (68)
T ss_dssp SSCCSSSSSSCCC---CEETTTTBCCSCTTHHHHC-------SSCTTTCCCCCC--EECCCS
T ss_pred CCCCCCcCcCCCC---EEEECCCChhhhHHHHhcC-------CCCCCCCcchhc--eEEeec
Confidence 4568888776655 899999999 999999843 489999997653 666663
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=4.9e-05 Score=53.78 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=43.1
Q ss_pred eeecccccccCCCCCCeecCCC-----ceecHHHHHHHHHhCCCceecCCCCcccCcccc
Q 024742 203 LVCYITKELMDTENPPQVLPNG-----YVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l~cG-----hv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~ 257 (263)
-.|+|..+..++++ ++++||+ |.|-.++|.+|.... +...||.|+..|.....
T Consensus 16 ~~C~IC~~~~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 16 DICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSS-DTRCCELCKYEFIMETK 73 (80)
T ss_dssp CCCSSSCCCCCSSS-CEECSSSCCSSSCCEETTHHHHHHHHH-CCSBCSSSCCBCCCCCC
T ss_pred CCCeEcCccccCCC-eeEeccccCCcCCeeCHHHHHHHHhhC-CCCCCCCCCCeeecCcc
Confidence 46888888877666 5789996 999999999998753 34699999999987653
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.35 E-value=2.8e-05 Score=59.09 Aligned_cols=38 Identities=8% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccc
Q 024742 217 PPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 217 ~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~ 257 (263)
+.+.++|||+|...||.+|.+. +..||.|.+.|.+...
T Consensus 78 ~v~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~~~~~k~ 115 (117)
T 4a0k_B 78 TVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQKY 115 (117)
T ss_dssp -----------------------------------------
T ss_pred ccccCCcCceEcHHHHHHHHHc---CCcCCCCCCeeeeecc
Confidence 3445799999999999999864 4689999999876653
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.24 E-value=0.004 Score=45.39 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=28.1
Q ss_pred CeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 218 PQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 218 p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
.-|+||+|||+.++...+.++++ -.||.|...+.
T Consensus 15 gRmIPCkHvFCydCa~~~~~~~~--k~Cp~C~~~V~ 48 (101)
T 3vk6_A 15 GRMIPCKHVFCYDCAILHEKKGD--KMCPGCSDPVQ 48 (101)
T ss_dssp EEEETTCCEEEHHHHHHHHHTTC--CBCTTTCCBCS
T ss_pred eeeccccccHHHHHHHHHHhccC--CCCcCcCCeee
Confidence 34799999999999999986543 48999998765
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.79 E-value=0.0069 Score=40.07 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred eeecccccccCCCCCCeecCCCc-----eecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 203 LVCYITKELMDTENPPQVLPNGY-----VYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~l~cGh-----v~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
-.|.|..+..+ .|+++||.+ .+-+.+|.+|...+ +...||.|+..|..
T Consensus 7 ~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 7 PVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTIS-RNTACQICGVVYNT 59 (60)
T ss_dssp CEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHH-TCSBCTTTCCBCCC
T ss_pred CEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhC-CCCccCCCCCeeec
Confidence 46888877632 367899764 89999999998643 34699999999875
No 71
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.012 Score=52.82 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=45.4
Q ss_pred eeeecccccccCCCCCCee-cCCCce--ecHHHHHHHHHhCCCceecCCCCcccCcccce
Q 024742 202 KLVCYITKELMDTENPPQV-LPNGYV--YSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~-l~cGhv--~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~ 258 (263)
.+.||+|+..|.. |+. ..|-|+ |...++..+..+ .+..+||+|++....++++
T Consensus 249 SL~CPlS~~ri~~---PvRg~~C~HlQCFDl~sfL~~~~~-~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKY---PSKSINCKHLQCFDALWFLHSQLQ-IPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSS---EEEETTCCSSCCEEHHHHHHHHHH-SCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccc---cCcCCcCCCcceECHHHHHHHhhc-CCceeCCCCCcccCHHHee
Confidence 3789999999988 996 789998 888889888754 4678999999999888764
No 72
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.03 E-value=0.024 Score=50.77 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=45.7
Q ss_pred eeeecccccccCCCCCCee-cCCCce--ecHHHHHHHHHhCCCceecCCCCcccCcccce
Q 024742 202 KLVCYITKELMDTENPPQV-LPNGYV--YSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~-l~cGhv--~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~ 258 (263)
.+.||+|+..|.- |+. ..|-|+ |...++..+..+ .+..+||.|++....++++
T Consensus 215 SL~CPlS~~ri~~---P~Rg~~C~HlqCFDl~sfL~~~~~-~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTI---PCRAVTCTHLQCFDAALYLQMNEK-KPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSS---EEEETTCCCCCCEEHHHHHHHHHH-SCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceecc---CCcCCCCCCCccCCHHHHHHHHhh-CCCeECCCCCcccCHHHeE
Confidence 4689999999988 886 789999 999999988764 4678999999999988764
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.017 Score=39.93 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=33.6
Q ss_pred eecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 204 VCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 204 ~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
.|.|.++.+.... ....|||.|-..+|.+|.+.. ..-+||.|...+...
T Consensus 17 ~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 17 ICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDYWPHE 65 (74)
T ss_dssp BCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC-SSCCCTTTCSCCCSC
T ss_pred cCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc-CCCCCCCCcCcCCCC
Confidence 3555555544211 112899999999999998643 336999999988754
No 74
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.14 E-value=0.0024 Score=39.68 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.4
Q ss_pred ecCCCceecHHHHHHHHHhCCCceecCCCCcc
Q 024742 220 VLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 251 (263)
Q Consensus 220 ~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~ 251 (263)
-+.||++++.+-++.+ ..++|||||-.
T Consensus 6 C~rCg~~fs~~el~~l-----P~IrCpyCGyr 32 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVL-----PGVRCPYCGYK 32 (48)
T ss_dssp CCCTTTTCCCCCSCCC-----SSSCCTTTCCS
T ss_pred eeccCCCccHHHHhhC-----CCcccCccCcE
Confidence 3789999998888766 24899999954
No 75
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=91.88 E-value=0.011 Score=41.09 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=26.6
Q ss_pred CCcCCeeeecccccccCCCCC-Cee--cCCCcee--cHHHHHHHHHhCCCceecCCCCcccC
Q 024742 197 KQHHSKLVCYITKELMDTENP-PQV--LPNGYVY--STKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 197 ~~~~s~~~Cpi~~~~~~~~n~-p~~--l~cGhv~--~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
|+-|-.-.|||+|+.++=... --| +.|+.-+ .++.+.+-.. +=.||||.||++|-
T Consensus 3 ~~~~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e--~F~FkCP~CgEEFy 62 (95)
T 2k5c_A 3 HHHHHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVE--EFVFKCPVCGEEFY 62 (95)
T ss_dssp -----CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHH--HSEEECTTTCCEEE
T ss_pred ccccccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHH--HHhhcCCCccHHHh
Confidence 445566778888887752110 012 2333222 1233322222 24689999999984
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=89.91 E-value=0.12 Score=46.14 Aligned_cols=34 Identities=18% Similarity=-0.021 Sum_probs=26.9
Q ss_pred cCCCceecHHHHHHHHHhCC--------CceecCCCCcccCc
Q 024742 221 LPNGYVYSTKALEEMAKKNN--------GKITCPRTGLVCNY 254 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~~~--------~~~~CP~c~~~~~~ 254 (263)
.+|||.|-..||.+|.+... -.-.||||.+..+.
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 58999999999999987421 13589999987653
No 77
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=89.30 E-value=0.34 Score=38.18 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHHHHhh----chhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCcchhhhhHHHHHHHHHHh
Q 024742 46 ALAWCSDN----KSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 111 (263)
Q Consensus 46 Al~w~~~~----~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~~~~~~~~~ei~~~~~lL 111 (263)
-..|++.. +++| +.+.|=+-+.-|++||.+|...+|-+|.+++-+-+...|.++|+++.+..
T Consensus 34 L~~wv~~sld~yk~EL----~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~ 99 (156)
T 2nxp_A 34 LKHFIECSLDCHRAEL----SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLT 99 (156)
T ss_dssp HHHHHHTSCHHHHHHH----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCC
T ss_pred HHHHHHhCcHHHHHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCC
Confidence 35566554 4455 46799999999999999999999999999887777777888899887644
No 78
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.17 E-value=0.084 Score=35.23 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcC---------CeeeecccccccCCCCCCeecCCC
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHH---------SKLVCYITKELMDTENPPQVLPNG 224 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~---------s~~~Cpi~~~~~~~~n~p~~l~cG 224 (263)
..||+|...+.. .-+|-.|.|| ....||+.+..+...+...++|.|
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~G 70 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSSG 70 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCCC
Confidence 569999887665 6678877766 456799999999988888888877
No 79
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=88.01 E-value=0.24 Score=37.26 Aligned_cols=76 Identities=8% Similarity=-0.025 Sum_probs=52.4
Q ss_pred CCCCCCchhhhhhc-CCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 177 KEDPLSQESFRKLA-SPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 177 ~~cp~c~~~~~~l~-~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..|..|...+..-. +.. ....+|.. |.|...++.+++.+.++....|.+|+++...++.. ...+|..|++.+..
T Consensus 3 ~~C~~C~~~I~~~~~~~a-~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~---~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKA-IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG---QDGLCASCDKRIRA 78 (131)
T ss_dssp CBBTTTCCBCCSSEEEEE-TTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC---CCEECTTTCCEECT
T ss_pred ccCcCCCCEeCCcEEEEE-CCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC---CccChhhcCCccCc
Confidence 45666766543211 111 12345554 99999999998656678889999999999988753 12489999998875
Q ss_pred cc
Q 024742 255 SD 256 (263)
Q Consensus 255 ~~ 256 (263)
.+
T Consensus 79 ~e 80 (131)
T 2xjy_A 79 YE 80 (131)
T ss_dssp TS
T ss_pred cc
Confidence 44
No 80
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=86.42 E-value=0.32 Score=32.76 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=29.7
Q ss_pred CCCcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 196 SKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 196 ~~~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
..+.-.+++||+++..+.-+. ..+...||.|+..|...|=+.+.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~~----------------------~~g~LvC~~c~~~YPI~dGIPvm 47 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYLE----------------------SEQLLVNERLNLAYRIDDGIPVL 47 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEET----------------------TTTEEEETTTTEEEEEETTEECC
T ss_pred CHHHHHHhCCCCCCCcCeEeC----------------------CCCEEEcCCCCccccCCCCEeee
Confidence 345667889999987554211 13567899999888877755543
No 81
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=86.14 E-value=0.34 Score=32.69 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=27.7
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
+.-.+++||+++..+.-+. ..+...||.|+..|...|=+.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~----------------------~~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQ----------------------DKQELWSRQAKLAYPIKDGIPYM 45 (68)
T ss_dssp SSSCCCBCSSSCCBCEEET----------------------TTTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeC----------------------CCCEEEcCCCCcEecCCCCeeee
Confidence 4557788998886543211 12567888888888877765543
No 82
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=84.65 E-value=0.29 Score=33.05 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=28.6
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
+.-.+++||+++..+.-+. ..+...||.|+..|...|=+.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~----------------------~~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFDK----------------------SKDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp CCEEECBCTTTCCBCEEET----------------------TTTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeC----------------------CCCEEEcCCCCcEecCCCCeeee
Confidence 3456889999986553211 13568899999999887766553
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=84.44 E-value=0.22 Score=37.33 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=53.4
Q ss_pred CCCCCCchhhhhhc-CCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 177 KEDPLSQESFRKLA-SPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 177 ~~cp~c~~~~~~l~-~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..|+.|...+..-. +. -....+|.. |.|...+..+.+....+....|.+|++....++.. .+-+|-.|++.+..
T Consensus 6 ~~C~~C~~~I~~~~~~~-a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~---~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLY-AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---NSGAGGSGGHMGSG 81 (122)
T ss_dssp CCBSSSSSCCCSSCCEE-ETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---CCCSSSCSSCCSCC
T ss_pred CCCcccCCEeCCcEEEE-ECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---CCCccccCCCCcCc
Confidence 45777766554221 11 112445654 99999999997544457789999999999998863 12289999998876
Q ss_pred ccce
Q 024742 255 SDLV 258 (263)
Q Consensus 255 ~~~~ 258 (263)
.+++
T Consensus 82 ~~~~ 85 (122)
T 1m3v_A 82 GDVM 85 (122)
T ss_dssp EESS
T ss_pred hheE
Confidence 6553
No 84
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=84.10 E-value=0.42 Score=32.43 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=28.5
Q ss_pred CcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 198 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 198 ~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
..-.+++||+++..+.-+. ..+...||.|+..|...|=+.+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~----------------------~~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQR----------------------AQAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCBCTTTCCBEEEET----------------------TTTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCEEeC----------------------CCCEEEcCCCCceecCCCCeeee
Confidence 4557889999887553211 13567899999888877765543
No 85
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.54 E-value=1.7 Score=28.73 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=40.6
Q ss_pred CCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|+.|...+.+-+.-+ .....+|.. |.|...+..+++ ..+....|.+|++.+..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRG--QHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTT--SCEEESSSCEEEHHHHHHHHH
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCc--CcCEeeCCeEECHHHHHHHHc
Confidence 46888876554311111 223455655 999999999953 457788999999999998875
No 86
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=83.54 E-value=0.81 Score=35.20 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=44.5
Q ss_pred HHHHHHHhh----chhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCcchhhhhHHHHHHHHH
Q 024742 45 PALAWCSDN----KSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 109 (263)
Q Consensus 45 ~Al~w~~~~----~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~~~~~~~~~ei~~~~~ 109 (263)
.-..|++.. +++| +.+.|=+-+.-|++||.+|...+|-+|..++-+.+... .++|+++.+
T Consensus 14 ~L~~wv~~sld~yk~EL----~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~ 77 (138)
T 2j4b_A 14 SLKTWIEDSLDLFKNDL----LPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFES 77 (138)
T ss_dssp HHHHHHHHSCHHHHHHH----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTT
T ss_pred HHHHHHHhCcHhhHHHH----HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhc
Confidence 345677665 4555 46799999999999999999999999888876666555 666776655
No 87
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=83.09 E-value=0.33 Score=37.96 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=45.5
Q ss_pred HHHHHHhh----chhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCcchhhhhHHHHHHHHH
Q 024742 46 ALAWCSDN----KSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 109 (263)
Q Consensus 46 Al~w~~~~----~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~~~~~~~~~ei~~~~~ 109 (263)
-..|++.. +++|. .+.|=+-+.-|++||.+| ..+|-+|..++-+-+...|.++|+++.+
T Consensus 17 Lr~wv~~sld~yk~EL~----~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~ 79 (148)
T 2j49_A 17 LKNWVDSSLEIYKPELS----YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHTSCTTTHHHHH----HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTT
T ss_pred HHHHHHhCcHhhHHHHH----HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhc
Confidence 35566654 45554 578999999999999999 9999999988777776667777776655
No 88
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=82.41 E-value=0.78 Score=29.41 Aligned_cols=37 Identities=5% Similarity=0.068 Sum_probs=24.6
Q ss_pred cCCCceecHHHHHHHHHhCCCceecCCCCcccCcccc
Q 024742 221 LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~ 257 (263)
-.||..|....-....-.+...++|++|++.|...+-
T Consensus 18 ~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 18 PVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTT
T ss_pred CCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcc
Confidence 4478877766544321123467999999999987653
No 89
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=81.69 E-value=0.48 Score=32.02 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=26.6
Q ss_pred cCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcccceecc
Q 024742 199 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 199 ~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
.-.+++||+++..+.-+. ..+...||.|+..|...|=+.+.
T Consensus 5 LLeiL~CP~ck~~L~~~~----------------------~~~~LiC~~cg~~YPI~dGIPvm 45 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSA----------------------DKTELISKGAGLAYPIRDGIPVM 45 (69)
T ss_dssp GGGTCCCTTTCCCCEECT----------------------TSSEEEETTTTEEEEEETTEECC
T ss_pred HHhheeCCCCCCcCeEeC----------------------CCCEEEcCCCCcEecCcCCeeee
Confidence 446788888886543211 13567888888888877655543
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.34 E-value=2.2 Score=30.12 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=39.2
Q ss_pred Ceeeeccccccc--CCCCCCee--cCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 201 SKLVCYITKELM--DTENPPQV--LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 201 s~~~Cpi~~~~~--~~~n~p~~--l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..-+|-|.|+.+ +++..|++ -.||.-+|+.+.+--.+ ++.-.||.|+..++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk--eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR--EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH--TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh--ccCccccccCCcccc
Confidence 335799999987 44443443 68999999999997644 345699999999973
No 91
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.23 E-value=1.6 Score=36.74 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred eeeecccccccCCCCCCee-cCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 202 KLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~~-l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
+-.|.++++....+ .. -.||+.+-..|+.++.+ ..+..+||.|+......
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~-~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQ-SNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTT-TCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHH-hCCCCCCCCCCCCCCCC
Confidence 45577776666642 22 23999999999999975 34457999999987665
No 92
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=80.55 E-value=0.55 Score=31.50 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCceecCCCCcccCccccee
Q 024742 240 NGKITCPRTGLVCNYSDLVK 259 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~~~ 259 (263)
.+...||||+..|..++..+
T Consensus 38 ~g~~~CpYCg~~f~l~~~~~ 57 (67)
T 2jrr_A 38 TGWVECPYCDCKYVLKGSKA 57 (67)
T ss_dssp TSEEEETTTTEEEEETTSGG
T ss_pred CCeEECCCCCCEEEECCCcc
Confidence 46789999999998876544
No 93
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=80.01 E-value=3.5 Score=27.63 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|.... |.+-.. .+...++|+.|++.|....
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 79 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD 79 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHH
Confidence 3888886543 333222 2456799999999997643
No 94
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=78.65 E-value=2.8 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=22.3
Q ss_pred CCceecHHHHH-HHHH--hCCCceecCCCCcccCccc
Q 024742 223 NGYVYSTKALE-EMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~~~~-~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
||..|....-. +-.+ .+...++|+.|++.|...+
T Consensus 27 C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp BCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred CCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHH
Confidence 78877655432 2211 2456699999999998654
No 95
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=76.40 E-value=0.85 Score=33.96 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=49.6
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
..|+.|...+..-..-......+|.. |.|...+..+++. ++....|.+|++....++.. .+|+.|++.+...
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~~~-----~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKNHA-----VVCQGCHNAIDPE 76 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHHSC-----CBCTTTCSBCCTT
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcC--EEEeECCEEechHHhCcCcC-----ccCcccCCcCCcC
Confidence 34677766543211000112345554 9999999999753 67789999999999987742 5899999988864
Q ss_pred c
Q 024742 256 D 256 (263)
Q Consensus 256 ~ 256 (263)
+
T Consensus 77 ~ 77 (126)
T 2xqn_T 77 V 77 (126)
T ss_dssp S
T ss_pred c
Confidence 3
No 96
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=76.02 E-value=5.3 Score=26.10 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=21.3
Q ss_pred CCCceecHH-HHHHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTK-ALEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~-~~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|... .|.+-.. .+...++|+.|++.|...+
T Consensus 34 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 71 (82)
T 2kmk_A 34 YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71 (82)
T ss_dssp SSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred cCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence 466666443 3332221 2456699999999997643
No 97
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.22 E-value=1.1 Score=30.08 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=21.0
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhhch
Q 024742 29 QEAKKVIDALQ--NKEVAPALAWCSDNKS 55 (263)
Q Consensus 29 ~~~~~I~~~i~--~gdi~~Al~w~~~~~~ 55 (263)
..+...+.+|+ +||++.|++|+-.+.+
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34556677887 6999999999988754
No 98
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=74.76 E-value=0.89 Score=30.63 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecH-HHHHHHHHhCCCceecCCCCcc
Q 024742 179 DPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYST-KALEEMAKKNNGKITCPRTGLV 251 (263)
Q Consensus 179 cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~-~~~~~~~~~~~~~~~CP~c~~~ 251 (263)
|+.|...+.+-+.-......+|.. |.|...+..+++. ++....|.+|++ ....++.. .+|-.|+..
T Consensus 3 C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~~~f~-----~~C~~C~~~ 70 (76)
T 1iml_A 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG--GHAEHEGKPYCNHPCYSAMFG-----PKGFGRGGA 70 (76)
T ss_dssp CTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTT--TEEEETTEEEETTTHHHHHSS-----CCCSSCCCS
T ss_pred CCCCCCEEECceEEEECCccccCCCCCccccCccCCCC--ceECcCCeEeeCHHHHHHHhC-----ccCCCcCCc
Confidence 556655443211111113445544 8999999999775 467789999999 58877642 478888754
No 99
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=74.10 E-value=1.5 Score=28.27 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCcCCeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecC--CCCcccCcccceec
Q 024742 196 SKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCP--RTGLVCNYSDLVKA 260 (263)
Q Consensus 196 ~~~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP--~c~~~~~~~~~~~v 260 (263)
....-++++||+++..+..+. +...|+ .|+..|...|=+.+
T Consensus 4 d~~lL~iL~CP~c~~~L~~~~------------------------~~L~C~~~~c~~~YPI~dGIPv 46 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEERD------------------------AELICTGQDCGLAYPVRDGIPV 46 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEEET------------------------TEEEECSSSCCCEEEEETTEEC
T ss_pred CHHHHhheeCCCCCCcceecC------------------------CEEEcCCcCCCcEEeeECCEee
Confidence 345667888998887543211 346777 77777776654443
No 100
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=73.82 E-value=0.83 Score=31.68 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=14.6
Q ss_pred CCceecCCCCcccCcccc
Q 024742 240 NGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~ 257 (263)
.+...||||+..|..++.
T Consensus 51 ~g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 51 TGFVECGYCDRRYIHESF 68 (80)
T ss_dssp TCEEECSSSSCEEEEHHH
T ss_pred CCeEECCCCCCEEEecCC
Confidence 467899999999987653
No 101
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=72.61 E-value=0.96 Score=35.67 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=45.8
Q ss_pred CCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 177 KEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..|..|...+.+-+.-+ .....+|.. |.|-..+..+...+..++...|.+|++.+..++.+.+.+..++-.-...++.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rprt~~~~ 145 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTPMVA 145 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC----------EEEEC
T ss_pred ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCCCCcccH
Confidence 45777766543321100 123445544 8999999999765555677899999999999886543222233233335554
Q ss_pred ccce
Q 024742 255 SDLV 258 (263)
Q Consensus 255 ~~~~ 258 (263)
++..
T Consensus 146 ~q~~ 149 (169)
T 2rgt_A 146 ASPE 149 (169)
T ss_dssp CCCE
T ss_pred HHHH
Confidence 4443
No 102
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=72.33 E-value=3.5 Score=32.29 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
..|..|...+..-.+---....+|.. |.|...+..+++.. + ...|.+|++.+..++.. .+|..|++.+...
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~f~-----~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKRFG-----TKCAACQLGIPPT 78 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC--E-ESSSCEECHHHHHHHHS-----CBCTTTCCBCCTT
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC--c-ccCCeeeeccccccccc-----ccccccccccCCC
Confidence 45777766554211100123455544 99999999998754 4 57999999999988753 4788888877654
Q ss_pred c
Q 024742 256 D 256 (263)
Q Consensus 256 ~ 256 (263)
+
T Consensus 79 ~ 79 (169)
T 2rgt_A 79 Q 79 (169)
T ss_dssp S
T ss_pred c
Confidence 4
No 103
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=71.74 E-value=7 Score=26.65 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=22.3
Q ss_pred CCCceecHHHH-HHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKAL-EEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~~-~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|....- .+-.+ .+...++|+.|++.|....
T Consensus 52 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 89 (100)
T 2ebt_A 52 GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89 (100)
T ss_dssp SCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHH
Confidence 38888765433 32221 2345689999999997643
No 104
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=71.74 E-value=6.7 Score=29.33 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=5.9
Q ss_pred eeeeccccccc
Q 024742 202 KLVCYITKELM 212 (263)
Q Consensus 202 ~~~Cpi~~~~~ 212 (263)
.|.|++.+..+
T Consensus 50 ~~~C~~C~k~F 60 (133)
T 2lt7_A 50 KYPCRYCEKVF 60 (133)
T ss_dssp CEECSSSSCEE
T ss_pred CeeCCccCeec
Confidence 35566555544
No 105
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=71.60 E-value=1.5 Score=30.90 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCceecCCCCcccCcccce
Q 024742 240 NGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~~ 258 (263)
.+..+||||+..|..++-.
T Consensus 46 ~g~~~CpYCg~~y~~~~~~ 64 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSL 64 (87)
T ss_dssp CCEECCTTTCCEEECCTTS
T ss_pred CCeEECCCCCCEeEcCCCC
Confidence 4789999999999887644
No 106
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.27 E-value=9.3 Score=25.63 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=42.9
Q ss_pred ccCCCCCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCee-cCCCceecHHHHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAK 237 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~-l~cGhv~~~~~~~~~~~ 237 (263)
|.......|+.|...+....+. .....+|.. |.|...+..+.+... +. ...|.+|++.+..++..
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~g~~-f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 10 YWGKFGEFCHGCSLLMTGPFMV-AGEFKYHPECFACMSCKVIIEDGDA-YALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp SSCCSSCBCTTTCCBCCSCCBC-CTTCCBCTTSCBCTTTCCBCCTTSC-EEECSSSCEEEHHHHHHHHC
T ss_pred HhhhcCCcCccCCCCcCceEEE-ECCceeccccCCccCCCCccCCCCc-EEEeeCCEEECHHHHHHHhc
Confidence 3333345688888765522111 123556654 999999999975443 54 48999999999988754
No 107
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.22 E-value=2.8 Score=29.18 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=41.8
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
...|+.|...+.+.+.-......+|.. |.|-..+..+.+.+ +....|.+|++.+..++..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGT--YASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTT--CCCSSSCCCCHHHHHHHSC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCC--cEeECCEEECHHHHHHHhC
Confidence 356888888764322212233455544 99999999997753 6678999999999988753
No 108
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=70.82 E-value=3.1 Score=33.39 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|..|...+.+-+.-.-....+|.. |.|-..+..+.+. ++....|.+|++....++..
T Consensus 8 ~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDST--TVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp EECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSS--SEEEETTEEEEHHHHHHHHS
T ss_pred CcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCC--eeEecCCEeeChhhhHhhcC
Confidence 35777877653211101123456654 9999999999775 46677999999999998864
No 109
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=69.06 E-value=2 Score=21.61 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=12.3
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFS 17 (27)
T ss_dssp CEECSSSSCEESSHH
T ss_pred CccCCCcChhhCCHH
Confidence 489999999997643
No 110
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=69.06 E-value=2.1 Score=23.48 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 9 ~k~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSRSD 25 (37)
T ss_dssp SSSBCCTTTCCCBSSHH
T ss_pred CCCccCCCCCcccCcHH
Confidence 34689999999998643
No 111
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.74 E-value=2.3 Score=23.18 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|++|++.|....
T Consensus 7 ~k~~~C~~C~k~f~~~~ 23 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKH 23 (36)
T ss_dssp CCCEECTTTCCEESSHH
T ss_pred CCCEECCCCCceeCCHH
Confidence 35689999999997643
No 112
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=68.73 E-value=0.75 Score=32.76 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=49.2
Q ss_pred CCCCCCchhhhh--hcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 177 KEDPLSQESFRK--LASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 177 ~~cp~c~~~~~~--l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
..|+.|...+.+ ..+.. ....+|.. |.|-..+..+++ .++....|.+|++....++. ..+|..|++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~~-----~~~C~~C~~~I~ 77 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY-KNRFWHDTCFRCAKCLHPLAN--ETFVAKDNKILCNKCTTRED-----SPKCKGCFKAIV 77 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE-TTEEEETTTCCCSSSCCCTTS--SCCEEETTEEECHHHHTTCC-----CCBCSSSCCBCC
T ss_pred CcCcccCCcccCCceEEEE-CccChhhcCCcccccCCCCCc--CeeECcCCEEEChhHhhhhc-----CCccccCCCccc
Confidence 457777765532 11111 13445555 999999999853 35677899999999987653 259999999988
Q ss_pred ccc
Q 024742 254 YSD 256 (263)
Q Consensus 254 ~~~ 256 (263)
..+
T Consensus 78 ~~~ 80 (101)
T 2cup_A 78 AGD 80 (101)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 113
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.67 E-value=3.3 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCCceecHH-HHHHHHH--hCCCceecCCCCcccCcccc
Q 024742 222 PNGYVYSTK-ALEEMAK--KNNGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 222 ~cGhv~~~~-~~~~~~~--~~~~~~~CP~c~~~~~~~~~ 257 (263)
-||..|... .|.+-.+ .+...++|++|++.|...+.
T Consensus 33 ~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~ 71 (85)
T 2lv2_A 33 VCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPG 71 (85)
T ss_dssp TSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHH
T ss_pred CCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHH
Confidence 366666544 3444332 13457999999999986543
No 114
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=68.34 E-value=2 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=16.4
Q ss_pred HHHHHHHHh--cCChHHHHHHHH
Q 024742 31 AKKVIDALQ--NKEVAPALAWCS 51 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~ 51 (263)
+..++.+|+ +||++.|++|+-
T Consensus 22 ~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 22 FDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 345577776 699999999974
No 115
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=68.20 E-value=7.2 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=24.4
Q ss_pred cCCCceecHHHHH-HHHH--hCCCceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKALE-EMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~~~-~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
--||-.|...+-. +-.+ .+...++|+.|++.|....
T Consensus 8 ~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~ 46 (60)
T 4gzn_C 8 NFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQS 46 (60)
T ss_dssp TTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred CCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHH
Confidence 5588888765543 2221 2456799999999998654
No 116
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=68.19 E-value=9.5 Score=26.86 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=31.2
Q ss_pred Ceeeec--ccccccCC------------CCCCee-cCCCceecHHHHH-HHHH--hCCCceec--CCCCcccCcc
Q 024742 201 SKLVCY--ITKELMDT------------ENPPQV-LPNGYVYSTKALE-EMAK--KNNGKITC--PRTGLVCNYS 255 (263)
Q Consensus 201 s~~~Cp--i~~~~~~~------------~n~p~~-l~cGhv~~~~~~~-~~~~--~~~~~~~C--P~c~~~~~~~ 255 (263)
..|.|+ ..+..+.. ...|+. -.||..|....-. +-.+ .+...++| |.|++.|...
T Consensus 35 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 109 (119)
T 2jp9_A 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109 (119)
T ss_dssp CCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSH
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCH
Confidence 457888 46665542 223443 5588887654432 2211 23455788 7888888654
No 117
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.72 E-value=1.9 Score=28.55 Aligned_cols=44 Identities=7% Similarity=0.005 Sum_probs=29.8
Q ss_pred CCCCCCchhhhhhcCCC-CCCCCcCC---------eeeecccccccCCCCCCeec
Q 024742 177 KEDPLSQESFRKLASPL-PYSKQHHS---------KLVCYITKELMDTENPPQVL 221 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~l-P~~~~~~s---------~~~Cpi~~~~~~~~n~p~~l 221 (263)
..||+|...+.. ++.+ |-.|.|+. ...||+.+..++..++--.+
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 459999776543 3344 77777665 45799999999876653333
No 118
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=67.31 E-value=10 Score=25.54 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||.+|.... |.+-.+ .+...++|+.|++.|....
T Consensus 41 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 78 (96)
T 2dmd_A 41 TCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78 (96)
T ss_dssp SSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 3666665433 333222 1345699999999997643
No 119
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=67.01 E-value=1.2 Score=34.19 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=51.0
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcC----------CeeeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecC
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHH----------SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCP 246 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~----------s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP 246 (263)
-.||+|...+.. ++.+|-.|.|. +...||+.+..+...++-.++.-..++...++++... .-.+.||
T Consensus 32 ~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~--~L~v~Cp 108 (141)
T 3knv_A 32 YLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE--SLPAVCP 108 (141)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH--TSEEECC
T ss_pred cCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc--ccccccC
Confidence 459999776542 24467777654 3478999998775544334566667888888877764 3578997
Q ss_pred C--CCcccCccc
Q 024742 247 R--TGLVCNYSD 256 (263)
Q Consensus 247 ~--c~~~~~~~~ 256 (263)
. |+....+.+
T Consensus 109 n~GC~~~~~l~~ 120 (141)
T 3knv_A 109 SDGCTWKGTLKE 120 (141)
T ss_dssp STTCCCEEEHHH
T ss_pred CCCCCCEeEHHH
Confidence 4 666655544
No 120
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.71 E-value=6.7 Score=26.27 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=41.9
Q ss_pred ccCCCCCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
|.......|+.|...+.+-.+. .....+|.. |.|-..+..++.. .+....|.+|++....++.
T Consensus 10 y~~~~~~~C~~C~~~I~~~~v~-a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 10 YENKFAPRCARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLAGQ--QFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CCCCSSCCCTTTCCCCCSCCEE-SSSSEECTTTCBCSSSCCBCTTC--CEEECSSSEEEHHHHHHHT
T ss_pred HccccCCcCCCCCCEecCcEEE-ECCchhhhhhCCcccCCCcCCCC--eeEeECCEEECHHHHHHHc
Confidence 3333346688887765431111 123445554 9999999999643 5677899999999998774
No 121
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=66.59 E-value=2.3 Score=21.45 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.5
Q ss_pred ceecCCCCcccCcc
Q 024742 242 KITCPRTGLVCNYS 255 (263)
Q Consensus 242 ~~~CP~c~~~~~~~ 255 (263)
.++|+.|++.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 2 PLKCRECGKQFTTS 15 (29)
T ss_dssp CEECTTTSCEESCH
T ss_pred CccCCCCCCccCCh
Confidence 47999999998754
No 122
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=66.13 E-value=6.2 Score=26.08 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHHHHHh--cCChHHHHHHHHhhc
Q 024742 33 KVIDALQ--NKEVAPALAWCSDNK 54 (263)
Q Consensus 33 ~I~~~i~--~gdi~~Al~w~~~~~ 54 (263)
.-.++|. +||++.|++|+++..
T Consensus 26 dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 26 NCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3466776 699999999998764
No 123
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=66.04 E-value=5.9 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=22.1
Q ss_pred CCceecHHHHHHH-HH--hCCCceecCC--CCcccCccc
Q 024742 223 NGYVYSTKALEEM-AK--KNNGKITCPR--TGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~~~~~~-~~--~~~~~~~CP~--c~~~~~~~~ 256 (263)
||.+|....-.+. .+ .+...++|++ |++.|...+
T Consensus 25 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~ 63 (72)
T 2epa_A 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63 (72)
T ss_dssp TCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHH
T ss_pred CccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHH
Confidence 8888875543322 11 2345699976 999997654
No 124
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=65.62 E-value=2.3 Score=21.53 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.3
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLA 17 (27)
T ss_dssp TEEETTTTEEESCHH
T ss_pred CcCCCCCCcccCCHH
Confidence 489999999997643
No 125
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=65.35 E-value=2.8 Score=27.19 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.5
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHhh
Q 024742 30 EAKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 30 ~~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
.+..++.+|+ +||++.|++|+-.+
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3456677777 69999999998654
No 126
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=65.18 E-value=2.9 Score=22.41 Aligned_cols=17 Identities=12% Similarity=-0.117 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 5 ~k~~~C~~C~k~f~~~~ 21 (35)
T 2elx_A 5 SSGYVCALCLKKFVSSI 21 (35)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeECCCCcchhCCHH
Confidence 34689999999998643
No 127
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.15 E-value=2.9 Score=26.61 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=17.4
Q ss_pred HHHHHHHh--cCChHHHHHHHHhh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
...+.+|+ +||++.|++|+-.+
T Consensus 25 ~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 25 EANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34567776 79999999998765
No 128
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=65.04 E-value=5.5 Score=24.11 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=21.2
Q ss_pred CCCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|.... |.+-.+ .+...++|+.|++.|....
T Consensus 9 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 9 YCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp TTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHH
Confidence 3666654443 332221 2455699999999997654
No 129
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.02 E-value=3.1 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=12.8
Q ss_pred CceecCCCCcccCcc
Q 024742 241 GKITCPRTGLVCNYS 255 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~ 255 (263)
..++|+.|++.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 468999999999875
No 130
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=64.94 E-value=12 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=25.6
Q ss_pred CCeecC---CCceecHHHHH-HHHH--hCCCceecCC--CCcccCcccc
Q 024742 217 PPQVLP---NGYVYSTKALE-EMAK--KNNGKITCPR--TGLVCNYSDL 257 (263)
Q Consensus 217 ~p~~l~---cGhv~~~~~~~-~~~~--~~~~~~~CP~--c~~~~~~~~~ 257 (263)
.|+.=+ ||..|....-. +-.+ .+...++||+ |++.|....-
T Consensus 61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~ 109 (124)
T 1ubd_C 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109 (124)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTT
T ss_pred CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHH
Confidence 355433 88888765433 2221 2456789986 9999987553
No 131
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.85 E-value=2.9 Score=22.66 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 7 ~k~~~C~~C~k~f~~~~ 23 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKA 23 (36)
T ss_dssp CCSEECSSSSCEESSHH
T ss_pred CCCCCCCCCCcccCCHH
Confidence 34689999999997643
No 132
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=64.85 E-value=1.3 Score=35.63 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCCCCCchhhhhhc-CCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 177 KEDPLSQESFRKLA-SPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 177 ~~cp~c~~~~~~l~-~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
..|..|...+..-. +. -....+|.. |.|...+..+.+...++....|.+|++.+..++.. .+-+|+.|++.+..
T Consensus 6 ~~C~~C~~~I~~~~~~~-a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLY-AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---NSGACSACGQSIPA 81 (188)
T ss_dssp CBBTTTCCBCCCSEEEE-ETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS---CCEECTTTCCEECT
T ss_pred CcCccCCCEeCCceeEE-ecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc---cCCccccCCCcccc
Confidence 34666766543211 10 013445554 99999999887533467778999999999988753 12379999998875
Q ss_pred cc
Q 024742 255 SD 256 (263)
Q Consensus 255 ~~ 256 (263)
.+
T Consensus 82 ~e 83 (188)
T 1rut_X 82 SE 83 (188)
T ss_dssp TS
T ss_pred Cc
Confidence 44
No 133
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=64.47 E-value=2.9 Score=21.08 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=12.2
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 479999999998643
No 134
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=64.33 E-value=6.5 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.3
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
+..++.+|+ +||++.|++|+-.+
T Consensus 26 ~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 26 REANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445677776 68999999998765
No 135
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=63.66 E-value=6 Score=23.90 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 223 NGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
||..|.... |.+-.+ .+...++|+.|++.|....
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 43 (57)
T 1bbo_A 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43 (57)
T ss_dssp TCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHH
T ss_pred CcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHH
Confidence 566655443 333222 1345689999999997643
No 136
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=63.65 E-value=1.3 Score=30.25 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=39.7
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCc
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGL 250 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~ 250 (263)
..|+.|...+.+-+.-......+|.. |.|...+..++.. ++....|.+|++....++.. .+|--|++
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f~-----~~c~gcg~ 75 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST--TVAIHDAEVYCKSCYGKKYG-----PKGYGYGQ 75 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS--CCEEETTEEECSHHHHHHCC-------------
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCC--CeEeeCCEEECHHHHHHHhC-----CcccccCC
Confidence 45888877653222111123455544 9999999999765 35667999999999987743 36666654
No 137
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=63.53 E-value=2.7 Score=21.28 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=12.0
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 2 SFVCEVCTRAFARQE 16 (29)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 378999999997643
No 138
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=63.33 E-value=2.7 Score=34.40 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=8.6
Q ss_pred CeeeecccccccCC
Q 024742 201 SKLVCYITKELMDT 214 (263)
Q Consensus 201 s~~~Cpi~~~~~~~ 214 (263)
..|+|+++|-..++
T Consensus 170 ~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 170 KFHLCPICGYIHKG 183 (202)
T ss_dssp CEEECSSSCCEEES
T ss_pred cEEEECCCCCEEcC
Confidence 46777776655543
No 139
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=63.08 E-value=2.6 Score=20.97 Aligned_cols=14 Identities=7% Similarity=-0.057 Sum_probs=11.5
Q ss_pred eecCCCCcccCccc
Q 024742 243 ITCPRTGLVCNYSD 256 (263)
Q Consensus 243 ~~CP~c~~~~~~~~ 256 (263)
++|+.|++.|....
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 68999999998643
No 140
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.08 E-value=3.2 Score=22.53 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 7 ~k~~~C~~C~k~f~~~~ 23 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKS 23 (36)
T ss_dssp CCSEECSSSSCEESCHH
T ss_pred CCCccCCCCCchhCCHH
Confidence 34689999999997643
No 141
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=66.99 E-value=1.5 Score=21.90 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.6
Q ss_pred ceecCCCCcccCcccc
Q 024742 242 KITCPRTGLVCNYSDL 257 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~~ 257 (263)
.++|+.|++.|....-
T Consensus 2 p~~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQ 17 (26)
Confidence 3789999999986543
No 142
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=62.45 E-value=3 Score=20.96 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.0
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCCSSCCCCCCTTT
T ss_pred CCcCCCCCcccCCHH
Confidence 368999999997654
No 143
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=62.37 E-value=4.7 Score=31.98 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=40.1
Q ss_pred CCCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
...|..|...+.+-+.-+ .....+|.. |.|-..+..+...+..++...|++|++.+..++
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 456777776554322111 123445544 899999999976555567789999999998775
No 144
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=61.36 E-value=3.6 Score=22.07 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 5 ~k~~~C~~C~k~f~~~~ 21 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKA 21 (35)
T ss_dssp CSCEECSSSCCEESSHH
T ss_pred CcCeeCCCCCcccCCHH
Confidence 34689999999997643
No 145
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=61.35 E-value=15 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=21.6
Q ss_pred cCCCceecHHH-HHHHHH--h-CCCceecCCCCcccCc
Q 024742 221 LPNGYVYSTKA-LEEMAK--K-NNGKITCPRTGLVCNY 254 (263)
Q Consensus 221 l~cGhv~~~~~-~~~~~~--~-~~~~~~CP~c~~~~~~ 254 (263)
-.||..|.... |.+-.+ . +...++|+.|++.|..
T Consensus 16 ~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 16 QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 34777775544 443322 1 3456899999999975
No 146
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=61.24 E-value=3.2 Score=20.98 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.1
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 1rik_A 2 KFACPECPKRFMRSD 16 (29)
T ss_dssp CEECSSSSCEESCSH
T ss_pred CccCCCCCchhCCHH
Confidence 378999999997654
No 147
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.01 E-value=7.8 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHHHh-cCChHHHHHHHHhh
Q 024742 32 KKVIDALQ-NKEVAPALAWCSDN 53 (263)
Q Consensus 32 ~~I~~~i~-~gdi~~Al~w~~~~ 53 (263)
.+.+.+++ .||++.|++|+-.|
T Consensus 24 ~~a~~AL~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcC
Confidence 45677776 58999999998654
No 148
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.88 E-value=3.8 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=13.2
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 7 ~~~~~C~~C~k~f~~~~ 23 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKG 23 (36)
T ss_dssp CSSCBCTTTCCBCSSHH
T ss_pred CCCeecCcCCCCcCchH
Confidence 34689999999997643
No 149
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=60.49 E-value=3.9 Score=20.64 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=11.7
Q ss_pred ceecCCCCcccCcc
Q 024742 242 KITCPRTGLVCNYS 255 (263)
Q Consensus 242 ~~~CP~c~~~~~~~ 255 (263)
.++|+.|++.|...
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 47999999999754
No 150
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.37 E-value=3.3 Score=22.58 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 7 ~k~~~C~~C~k~f~~~~ 23 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDR 23 (37)
T ss_dssp CCCCEETTTTEECSSHH
T ss_pred CCCcCCCCCCCccCCHH
Confidence 34589999999998654
No 151
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=60.17 E-value=7.5 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCceecHH-HHHHHHH--hCCCceecCCCCcccCccc
Q 024742 223 NGYVYSTK-ALEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~-~~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
||..|... .|.+-.+ .+...++|+.|++.|...+
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHH
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 66666543 3333322 1234689999999997654
No 152
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=60.11 E-value=10 Score=23.60 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=22.1
Q ss_pred CCCceecHH-HHHHHHHh----CCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTK-ALEEMAKK----NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~-~~~~~~~~----~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|... .|.+-... +...++|+.|++.|...+
T Consensus 15 ~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~ 54 (66)
T 2drp_A 15 VCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66)
T ss_dssp TTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred CCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHH
Confidence 467777544 34333221 345699999999997654
No 153
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=59.91 E-value=15 Score=25.96 Aligned_cols=79 Identities=8% Similarity=-0.042 Sum_probs=45.4
Q ss_pred CCCCCCchhhh---hhcCCCCCCCCcCCeeeecccccccC---------------CCCCCee-cCCCceecHHHHH-HHH
Q 024742 177 KEDPLSQESFR---KLASPLPYSKQHHSKLVCYITKELMD---------------TENPPQV-LPNGYVYSTKALE-EMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~---~l~~~lP~~~~~~s~~~Cpi~~~~~~---------------~~n~p~~-l~cGhv~~~~~~~-~~~ 236 (263)
-.|+.|...+. .|...+- .|.-...|.|++.+..+. ....|+. --||.+|....-. +-.
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~ 86 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH
Confidence 45888866432 1222211 122334588999887653 2233443 5689998765533 222
Q ss_pred H--hCCCceecCCCCcccCccc
Q 024742 237 K--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 237 ~--~~~~~~~CP~c~~~~~~~~ 256 (263)
+ .+...++|+.|++.|....
T Consensus 87 ~~h~~~~~~~C~~C~~~f~~~~ 108 (124)
T 2dlq_A 87 VSHTGEMPYKCSSCSQQFMQKK 108 (124)
T ss_dssp HHHSSSCSEECSSSCCEESSHH
T ss_pred HHcCCCCCccCCCccchhCCHH
Confidence 2 2345689999999987643
No 154
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=59.86 E-value=3.1 Score=21.28 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.1
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 2 AYACGLCNRAFTRRD 16 (30)
T ss_dssp CSBCTTTCCBCSSSH
T ss_pred CcCCcccCcccCChH
Confidence 378999999997654
No 155
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=59.67 E-value=16 Score=24.47 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=20.7
Q ss_pred CCCceecHH-HHHHHHH-h-CC--CceecCCCCcccCccc
Q 024742 222 PNGYVYSTK-ALEEMAK-K-NN--GKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~-~~~~~~~-~-~~--~~~~CP~c~~~~~~~~ 256 (263)
.||..|... .|.+-.+ . +. ..++|+.|++.|....
T Consensus 40 ~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~ 79 (95)
T 2yt9_A 40 VCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79 (95)
T ss_dssp SSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHH
T ss_pred CCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHH
Confidence 366666543 3333222 1 22 5689999999997643
No 156
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.35 E-value=13 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=21.4
Q ss_pred CCCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|.... |.+-.+ .+...++|+.|++.|....
T Consensus 22 ~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~ 59 (74)
T 2lce_A 22 RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59 (74)
T ss_dssp TSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHH
T ss_pred CCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHH
Confidence 4666665433 333222 1345699999999997643
No 157
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.02 E-value=3.3 Score=28.25 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.1
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHhh
Q 024742 30 EAKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 30 ~~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
.+..++.+|+ +||++.|++|+-.+
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3556678887 69999999998765
No 158
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.92 E-value=7.7 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.3
Q ss_pred HHHHHHh-cCC--hHHHHHHHHhh
Q 024742 33 KVIDALQ-NKE--VAPALAWCSDN 53 (263)
Q Consensus 33 ~I~~~i~-~gd--i~~Al~w~~~~ 53 (263)
++..+|. .|+ +++|++|+.+.
T Consensus 25 rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 25 MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHh
Confidence 5677776 566 99999999764
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=58.90 E-value=2.8 Score=27.40 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=39.0
Q ss_pred CCCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
...|..|...+.+.+.-+ .....+|.. |.|-..+..+.+. .+....|.+|++....++
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG--LFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG--CCEEETTEEECHHHHHHH
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC--CeEeECCeEeCHHHHHHh
Confidence 456888877665332111 122345544 8999999998765 455778999999988765
No 160
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.84 E-value=4.4 Score=21.94 Aligned_cols=16 Identities=6% Similarity=-0.197 Sum_probs=13.0
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 8 k~~~C~~C~k~f~~~~ 23 (36)
T 2elv_A 8 LLYDCHICERKFKNEL 23 (36)
T ss_dssp CCEECSSSCCEESSHH
T ss_pred CCeECCCCCCccCCHH
Confidence 4689999999998654
No 161
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=58.79 E-value=3.5 Score=33.03 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcc
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 251 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~ 251 (263)
..|+.|...+.+-+.-.-....+|.. |.|...+..++.. .+....|.+|++....++.. .+|..|++.
T Consensus 116 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~~f~-----~kc~~C~~~ 184 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLEST--TLADKDGEIYCKGCYAKNFG-----PKGFGFGQG 184 (192)
T ss_dssp EECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSS--SEEEETTEEEEHHHHHHHTC-----CCCCCCCCC
T ss_pred CcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCC--cccccCCEEeCHHHHHHhcC-----CcCCCCCCc
Confidence 34888877664311111223455655 9999999999764 36788999999999988753 489999875
No 162
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=58.51 E-value=3.3 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 8 ~k~~~C~~C~k~f~~~~ 24 (42)
T 2el5_A 8 ENPYECSECGKAFNRKD 24 (42)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCccCCCcChhhCCHH
Confidence 34689999999998654
No 163
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=58.48 E-value=9 Score=23.95 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHh--cCChHHHHHHHHh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSD 52 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~ 52 (263)
+..++.+|+ +||++.|++|+-.
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456677776 6899999999854
No 164
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=58.42 E-value=3.2 Score=32.96 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccCcc
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 255 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~~ 255 (263)
..|..|...+..-.+---....+|.. |.|...+..+++.. + ...|.+|++.+..++.. .+|..|++.....
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~f~-----~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKRFG-----TKCAACQLGIPPT 132 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCC--E-EETTEEECHHHHHHTTS-----CCCTTTCCCCCSS
T ss_pred CcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCc--e-eECCEeeecCccccccc-----cccccCCCccCCC
Confidence 45777777554211100123445544 99999999998754 4 47999999999987642 4788888776654
Q ss_pred c
Q 024742 256 D 256 (263)
Q Consensus 256 ~ 256 (263)
+
T Consensus 133 ~ 133 (182)
T 2jtn_A 133 Q 133 (182)
T ss_dssp C
T ss_pred c
Confidence 4
No 165
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.24 E-value=3.5 Score=22.74 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 7 ~k~~~C~~C~k~f~~~~ 23 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKN 23 (37)
T ss_dssp SCEEECSSSSCEEECHH
T ss_pred CcCeECCCCCcccCCHH
Confidence 34689999999997643
No 166
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=58.20 E-value=4 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=13.8
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++||.|++.+...+
T Consensus 7 ~~~~~C~~C~~~i~~~~ 23 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPVWD 23 (39)
T ss_dssp CCEEECTTTCCEEEGGG
T ss_pred CCCcccccccCcCCccc
Confidence 45689999999988654
No 167
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.68 E-value=14 Score=23.63 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=22.9
Q ss_pred cCCCceecHHHH-HHHHH--hCCCceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKAL-EEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~~-~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
-.||..|....- .+-.+ .+...++|+.|++.|....
T Consensus 18 ~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~ 56 (72)
T 1x6e_A 18 VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56 (72)
T ss_dssp SSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHH
T ss_pred CCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHH
Confidence 447777765543 32222 2345699999999997654
No 168
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.53 E-value=4.3 Score=23.25 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQRN 26 (44)
T ss_dssp CCSEECSSSSCEESSSH
T ss_pred CCCeECCCCCchhCCHH
Confidence 34689999999998654
No 169
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.52 E-value=6.8 Score=25.58 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=39.9
Q ss_pred CCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|+.|...+.+-+.-+ .....+|.. |.|...+..+... ++....|.+|++....++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR--SFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTS--CEEEETTEEEEHHHHHHHT
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCC--ccCCcCCeEECHHHHHHHc
Confidence 45888877665321111 123455655 9999999998764 4777899999999988764
No 170
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=57.47 E-value=3.2 Score=30.98 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
..|+.|...+..-.+-.-....+|.. |.|..++..+.+....+....|.+||+.+..++
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHH
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhh
Confidence 45888877554211000112445544 999999999975444577889999999988765
No 171
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=57.30 E-value=3.6 Score=23.60 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=13.7
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 6 ekp~~C~~CgK~F~~~s 22 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPS 22 (36)
T ss_dssp CCCCEETTTTEECSCHH
T ss_pred ccCeECCCCCCccCCHh
Confidence 45689999999998654
No 172
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.07 E-value=14 Score=23.36 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=23.1
Q ss_pred cCCCceecHHHH-HHHHHh--CCCceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKAL-EEMAKK--NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~~-~~~~~~--~~~~~~CP~c~~~~~~~~ 256 (263)
-.||..|....- .+-.+. +...++|++|++.|...+
T Consensus 13 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 13 SECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp SSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 457887765543 332221 345699999999997654
No 173
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.00 E-value=3.8 Score=23.11 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 8 ~k~~~C~~C~k~f~~~~ 24 (42)
T 2yte_A 8 EKPYSCAECKETFSDNN 24 (42)
T ss_dssp CCSCBCTTTCCBCSSHH
T ss_pred CCCeECCCCCCccCCHH
Confidence 34589999999998654
No 174
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=56.92 E-value=7.1 Score=27.53 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=23.0
Q ss_pred eeecccccccCCCCCCee--cCCCceecHHHHHH
Q 024742 203 LVCYITKELMDTENPPQV--LPNGYVYSTKALEE 234 (263)
Q Consensus 203 ~~Cpi~~~~~~~~n~p~~--l~cGhv~~~~~~~~ 234 (263)
+.|+|..+.. .++|+. ++|||-|++.+++.
T Consensus 4 ~~C~~C~~~~--~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDP--AQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSS--CCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCC--CCCceEECCcCChHHhHHHCHH
Confidence 4577776532 245787 99999999999997
No 175
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.00 E-value=8.6 Score=25.69 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=41.5
Q ss_pred ccCCCCCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
|.......|+.|...+.+-.+ ......+|.. |.|...+..+.+. .+....|.+|++....++.
T Consensus 10 y~~~~~~~C~~C~~~I~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 10 FLAMFSPKCGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFSTG--SFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CCCCCSCBCTTTCCBCCSSCE-EETTEEECTTTCBCSSSCCBSCSS--CCEESSSCEECHHHHHHHH
T ss_pred HhhhcCCccccCCCeecceeE-EECCCeEecCcCChhhCCCCCCCC--cEEeECCEEECHHHHHHHc
Confidence 333334568888776543111 0112445544 9999999999764 3566799999999998875
No 176
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=55.91 E-value=4.1 Score=20.55 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.9
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 2 TYQCQYCEFRSADSS 16 (30)
T ss_dssp CCCCSSSSCCCSCSH
T ss_pred CccCCCCCCccCCHH
Confidence 368999999997643
No 177
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.87 E-value=5.1 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 9 ~k~~~C~~C~k~f~~~~ 25 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQKG 25 (42)
T ss_dssp CCSBCCTTTTCCBSSHH
T ss_pred CCCeeCCCccchhCCHH
Confidence 34689999999998643
No 178
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.83 E-value=3.5 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=14.7
Q ss_pred CCceecCCCCcccCcccc
Q 024742 240 NGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~ 257 (263)
.+.+.||.|+..|+..+.
T Consensus 10 ~~~~~CPrCn~~f~~~~s 27 (49)
T 2e72_A 10 GGRKICPRCNAQFRVTEA 27 (49)
T ss_dssp SSCCCCTTTCCCCSSHHH
T ss_pred CCceeCCcccccccchHH
Confidence 467899999999987553
No 179
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.81 E-value=5.2 Score=22.44 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 8 ~k~~~C~~C~k~f~~~~ 24 (41)
T 2ept_A 8 QRVYECQECGKSFRQKG 24 (41)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCeECCCCCCCcCCHH
Confidence 34689999999997644
No 180
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=55.74 E-value=5.1 Score=22.20 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=12.9
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 5 k~~~C~~C~k~f~~~~ 20 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQ 20 (39)
T ss_dssp SSEECTTTCCEESSHH
T ss_pred CceECCCCCcccCCHH
Confidence 4589999999997643
No 181
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.66 E-value=11 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=20.4
Q ss_pred HHHHHHHh--cCChHHHHHHHHhhchhh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDNKSRL 57 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~~~~L 57 (263)
.+.+.+|+ +||++.|++|+-.|.+..
T Consensus 24 ~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 24 DQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp HHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 45677877 579999999998886653
No 182
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.66 E-value=24 Score=25.80 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=40.6
Q ss_pred CCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 178 EDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 178 ~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
.|+.|...+.+.+.-+ .....+|.. |.|-..+..+.... .+....|.+||+.+..++..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~-~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGD-RYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTC-EEEECSSSEEEGGGHHHHHH
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCC-cEEeeCCEEEcHHHhHHHhc
Confidence 6888887765322111 123556644 99999999995433 46677999999999988765
No 183
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.53 E-value=3.6 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=19.4
Q ss_pred CCeecCCCceecHHHHHHHHHhCCCceecCCCCccc
Q 024742 217 PPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 252 (263)
Q Consensus 217 ~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~ 252 (263)
||.-..||++| . +.-+...+||.|+.+.
T Consensus 67 p~~C~~CG~~F----~----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVF----K----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBC----C----CCSSCCSSCSSSCCCC
T ss_pred CcChhhCcCee----c----ccCCCCCCCcCCCCCc
Confidence 36678999999 1 1122346999999864
No 184
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=60.45 E-value=2.5 Score=21.63 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=12.5
Q ss_pred ceecCCCCcccCcccc
Q 024742 242 KITCPRTGLVCNYSDL 257 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~~ 257 (263)
.++|++|++.|.....
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGA 18 (30)
Confidence 4789999999976543
No 185
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=55.49 E-value=9.5 Score=28.48 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=34.3
Q ss_pred eeecccccccCC------------CCCCeecC---CCceecHHHH-HHHHHh--CCCceecCC--CCcccCccc
Q 024742 203 LVCYITKELMDT------------ENPPQVLP---NGYVYSTKAL-EEMAKK--NNGKITCPR--TGLVCNYSD 256 (263)
Q Consensus 203 ~~Cpi~~~~~~~------------~n~p~~l~---cGhv~~~~~~-~~~~~~--~~~~~~CP~--c~~~~~~~~ 256 (263)
+.|++.+..+.. ...|+.=+ ||..|....- .+-.+. +...++|++ |++.|....
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~ 136 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHH
T ss_pred cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHH
Confidence 678888877643 23456543 9999876544 333221 234689997 999997543
No 186
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=55.40 E-value=5.8 Score=22.93 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.1
Q ss_pred CCceecCCCCcccCcccc
Q 024742 240 NGKITCPRTGLVCNYSDL 257 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~ 257 (263)
...++|+.|++.|.....
T Consensus 10 ~k~~~C~~C~k~f~~~~~ 27 (46)
T 2ely_A 10 EKPFKCVECGKGFSRRSA 27 (46)
T ss_dssp CCSBCCSSSCCCBSSTTH
T ss_pred CCCcccCccCcccCCHHH
Confidence 346899999999987653
No 187
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=55.13 E-value=12 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHh--cCChHHHHHHHHhh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
.+.+.+++ +||++.|++|+-.+
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 19 EEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHcC
Confidence 34566666 68999999998553
No 188
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.09 E-value=7 Score=25.36 Aligned_cols=58 Identities=7% Similarity=0.075 Sum_probs=38.7
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|+.|...+..-.+ ......+|.. |.|...+..+++ ..+....|.+|++.+..++..
T Consensus 6 ~~C~~C~~~I~~~~~-~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 6 SGCVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLAG--QRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCSSSCCCCCTTCE-EETTEEECTTTTBCTTTCCBCTT--SCEEECSSCEEEHHHHHHHHT
T ss_pred CCCcccCCEeCcceE-EECccccccCcCEECCCCCCCCC--CccEeECCEEECHHHhHHHhc
Confidence 457777665432111 0112445554 899999999874 357788999999999988753
No 189
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.08 E-value=5.2 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2enf_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CCSCBCSSSCCBCSSHH
T ss_pred CcCeECCCCCcccCCHH
Confidence 34689999999998654
No 190
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.07 E-value=5.5 Score=22.61 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (44)
T 2eof_A 10 EKPYECNECQKAFNTKS 26 (44)
T ss_dssp CCSEECTTTCCEESCHH
T ss_pred CCCeECCCCCcccCCHh
Confidence 34689999999998654
No 191
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=60.05 E-value=2.5 Score=21.55 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=11.5
Q ss_pred eecCCCCcccCccc
Q 024742 243 ITCPRTGLVCNYSD 256 (263)
Q Consensus 243 ~~CP~c~~~~~~~~ 256 (263)
++|+.|++.|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 68999999997654
No 192
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.02 E-value=5.3 Score=22.47 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 9 ~k~~~C~~C~k~f~~~~ 25 (42)
T 2en2_A 9 EKPYKCETCGARFVQVA 25 (42)
T ss_dssp SCSEECTTTCCEESSHH
T ss_pred CCCEeCCCcChhhCCHH
Confidence 34689999999998654
No 193
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=54.66 E-value=12 Score=21.46 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHHh--cCChHHHHHHH
Q 024742 33 KVIDALQ--NKEVAPALAWC 50 (263)
Q Consensus 33 ~I~~~i~--~gdi~~Al~w~ 50 (263)
+.+.+++ +||++.|++|+
T Consensus 20 ~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 20 EAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 3455665 68999999996
No 194
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.58 E-value=8.6 Score=27.90 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=41.0
Q ss_pred CCCCCCchhhhhh-cCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKL-ASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l-~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|+.|...+..- .+.. ....+|.. |.|...+..+++...++....|.+|++....++..
T Consensus 4 ~~C~~C~~~I~~~~~~~a-~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLKA-IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp BCBSSSCSCBCSSEEEEC-SSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred CCCcCCCCeeCCcEEEEE-CchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 4577776655422 1111 23455654 99999999997643356788999999999998865
No 195
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.47 E-value=5.5 Score=22.83 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (44)
T 2epv_A 10 EKPYECNECGKAFIWKS 26 (44)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCeECCCCCcccCchH
Confidence 34689999999998643
No 196
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.38 E-value=5.4 Score=23.04 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~F~~~~ 26 (46)
T 2emi_A 10 ERHYECSECGKAFIQKS 26 (46)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCCCCCCCCcccCCHH
Confidence 34689999999998643
No 197
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.33 E-value=5.2 Score=23.17 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=13.2
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2enh_A 11 KPYECDVCRKAFSHHA 26 (46)
T ss_dssp SSCBCTTTCCBCSSSH
T ss_pred CCcCCCCcCchhCCHH
Confidence 4589999999998654
No 198
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.23 E-value=5.3 Score=23.01 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2epw_A 10 EKPCKCTECGKAFCWKS 26 (46)
T ss_dssp CCSEECSSSCCEESSSH
T ss_pred CCCeeCCCCCCccCCHH
Confidence 34689999999998654
No 199
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=53.78 E-value=17 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=23.8
Q ss_pred CCee-cCCCceecHHHHH-HHHH--hCCCceecCCCCcccCccc
Q 024742 217 PPQV-LPNGYVYSTKALE-EMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 217 ~p~~-l~cGhv~~~~~~~-~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.|+. -.||..|....-. .-.. .+...++|+.|++.|....
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 76 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 76 (90)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHH
Confidence 3443 5588888655432 2211 2445688999988887543
No 200
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.58 E-value=5 Score=26.67 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=40.2
Q ss_pred CCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|+.|...+.+.+.-+ .....+|.. |.|-..+..+++. ++....|.+|++....++.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG--LFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG--CSEEETTEEECHHHHHHHC
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC--CeEeECCeEeCHHHHHHHh
Confidence 56888877664322222 223455655 9999999998765 3667899999999987763
No 201
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=53.57 E-value=12 Score=26.05 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=23.6
Q ss_pred cCCCcee--cHHHHHHHHH-hCCCceecCCCCcccCccc
Q 024742 221 LPNGYVY--STKALEEMAK-KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~--~~~~~~~~~~-~~~~~~~CP~c~~~~~~~~ 256 (263)
-.||..| ....|..-.+ .+...++|+.|++.|....
T Consensus 38 ~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 38 PTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLA 76 (96)
T ss_dssp TTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHH
T ss_pred CCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHH
Confidence 3478887 4555554322 2455689999999998643
No 202
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.57 E-value=5.5 Score=22.98 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2en3_A 10 EKPFQCKECGMNFSWSC 26 (46)
T ss_dssp CCSEECSSSCCEESSSH
T ss_pred CCCeeCcccChhhCCHH
Confidence 34689999999998654
No 203
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.43 E-value=5.5 Score=23.06 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=13.2
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCSK 26 (46)
T ss_dssp CCEECSSSCCEESSSH
T ss_pred CCEECcCCCCcCCCHH
Confidence 4689999999998654
No 204
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.35 E-value=5.7 Score=22.86 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2yts_A 10 EKPYICNECGKSFIQKS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCEECCCCChhhCChH
Confidence 34689999999998654
No 205
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=53.34 E-value=10 Score=28.19 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.3
Q ss_pred HHHHHHHHh--cCChHHHHHHHHh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSD 52 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~ 52 (263)
..+|+++|+ +||++.|++|+-.
T Consensus 90 ~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 90 LKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457899997 6899999999854
No 206
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.09 E-value=6.1 Score=22.72 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eow_A 10 EKPYKCNECGKAFRARS 26 (46)
T ss_dssp CCCEECTTSCCEESSHH
T ss_pred CCCeeccccCChhcCHH
Confidence 34689999999998654
No 207
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.74 E-value=5.1 Score=22.85 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (44)
T 2eoj_A 10 ENPYECCECGKVFSRKD 26 (44)
T ss_dssp CCSCEETTTTEECSSHH
T ss_pred CcCeeCCCCCCccCCHH
Confidence 34689999999998654
No 208
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=52.70 E-value=44 Score=22.75 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=8.1
Q ss_pred HhcCChHHHHHHHHh
Q 024742 38 LQNKEVAPALAWCSD 52 (263)
Q Consensus 38 i~~gdi~~Al~w~~~ 52 (263)
...|+++.|++.+++
T Consensus 27 ~~~~~~~~A~~~~~~ 41 (133)
T 2lni_A 27 FQKGDYPQAMKHYTE 41 (133)
T ss_dssp HHTTCSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 345555555555544
No 209
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=52.59 E-value=17 Score=24.94 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=19.7
Q ss_pred CCceecHH-HHHHHHHh--CCCceecCCCCcccCccc
Q 024742 223 NGYVYSTK-ALEEMAKK--NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~-~~~~~~~~--~~~~~~CP~c~~~~~~~~ 256 (263)
||..|... .|.+-... +...++|+.|++.|....
T Consensus 51 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 87 (106)
T 2ee8_A 51 CHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR 87 (106)
T ss_dssp SCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred ccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence 55555433 33333221 234589999999997543
No 210
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.57 E-value=6.1 Score=22.72 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytf_A 10 EKPFECSECQKAFNTKS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCcCCCCCCcccCCHH
Confidence 35689999999997643
No 211
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=52.53 E-value=5.9 Score=22.19 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 9 ~~~~~C~~C~k~f~~~~ 25 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQRG 25 (42)
T ss_dssp SCCEECSSSCCEESSHH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34689999999997643
No 212
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.52 E-value=6 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRV 26 (46)
T ss_dssp CCSEECTTTCCEESSSH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34689999999998654
No 213
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=52.44 E-value=23 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.7
Q ss_pred echHHHHHHHHhcCC---hHHHHHHHHHhCcchhh--hhHHHHHHHHHH
Q 024742 67 QLRLQEFIELVRGEN---NLRAITYARKYLAPWGA--THMKELQRVMAT 110 (263)
Q Consensus 67 ~L~~q~fIeLi~~~~---~~eAi~yar~~l~~~~~--~~~~ei~~~~~l 110 (263)
-=.-.+.+|||+.++ -..|+.|+++.+..+.. ...+|++.++..
T Consensus 52 aPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl~~ 100 (104)
T 4a18_Q 52 APYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVRA 100 (104)
T ss_dssp CHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334557899999998 68999999999988754 235666666543
No 214
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.37 E-value=6.2 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.0
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2emg_A 11 NPFICSECGKVFTHKT 26 (46)
T ss_dssp CSCBCTTTCCBCSSHH
T ss_pred CCEECCccCcccCCHH
Confidence 4589999999998654
No 215
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.26 E-value=12 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
+.+++.+|+ .||++.|++|+-.+
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456788888 47999999998654
No 216
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.26 E-value=6.4 Score=22.43 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (44)
T 2emb_A 10 RKRYECSKCQATFNLRK 26 (44)
T ss_dssp CSSEECTTTCCEESCHH
T ss_pred CCCeECCCCCCccCCHH
Confidence 34689999999998643
No 217
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.24 E-value=6.1 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~F~~~~ 26 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIF 26 (44)
T ss_dssp CCCEEETTTTEEESSSH
T ss_pred CCCeECcccCcccCCHH
Confidence 34689999999998654
No 218
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.08 E-value=6.3 Score=22.65 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQKA 26 (46)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCeECCCCCCccCCHH
Confidence 34689999999998643
No 219
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.02 E-value=11 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHHHh--cCChHHHHHHHHhhchhhhh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDNKSRLKK 59 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~~~~L~~ 59 (263)
.+.+.+|+ ++|++.|++|+-+|...+.+
T Consensus 36 ~~a~~AL~~~n~n~e~A~ewL~~h~~D~D~ 65 (85)
T 2dkl_A 36 EPAEEALKSNNMNLDQAMSALLEKKVDVDK 65 (85)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTSCCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCcCCccc
Confidence 45677776 57999999999998776654
No 220
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=51.99 E-value=2.4 Score=26.11 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=8.1
Q ss_pred ceecCCCCcc
Q 024742 242 KITCPRTGLV 251 (263)
Q Consensus 242 ~~~CP~c~~~ 251 (263)
..+||.|+..
T Consensus 30 dw~CP~Cg~~ 39 (46)
T 6rxn_A 30 DWCCPVCGVS 39 (46)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 4799999974
No 221
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.93 E-value=5.9 Score=22.84 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eq1_A 10 EKPYKCNECGKAFRAHS 26 (46)
T ss_dssp SCCCCCTTTTCCCSSHH
T ss_pred CCCeECCcCChhhCCHH
Confidence 34689999999998643
No 222
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.87 E-value=6.1 Score=22.84 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em4_A 10 QRPYECIECGKAFKTKS 26 (46)
T ss_dssp SSSEECSSSCCEESSHH
T ss_pred CcCcCCCCCCCccCCHH
Confidence 34689999999998643
No 223
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.80 E-value=5.5 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.1
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (44)
T 2en7_A 11 KPYVCNECGKAFRSKS 26 (44)
T ss_dssp SSSCCTTTCCCCSSHH
T ss_pred cCeECCCCCCccCCHH
Confidence 4589999999998654
No 224
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.62 E-value=15 Score=23.92 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.3
Q ss_pred HHHHHHHh--cCChHHHHHHHHhhchh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDNKSR 56 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~~~~ 56 (263)
.+++.+|+ +||++.|++|+-.+...
T Consensus 24 ~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 24 EASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 45677887 58999999999877543
No 225
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.51 E-value=6.5 Score=22.69 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2ytp_A 10 ERHYECSECGKAFARKS 26 (46)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCeECCcCCcccCCHH
Confidence 34689999999998654
No 226
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.48 E-value=17 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=18.2
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
..+.+.+|+ +||++.|++|+=.|
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 446677887 68999999998665
No 227
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=51.33 E-value=6.4 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2emj_A 10 EKPFECAECGKSFSISS 26 (46)
T ss_dssp CCSEECSSSSCEESSHH
T ss_pred CCCEECCCCCcccCCHH
Confidence 34689999999998653
No 228
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.22 E-value=6.2 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CSSEECSSSCCEESSSH
T ss_pred CCCeECCcCCchhCCHH
Confidence 34689999999998654
No 229
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=51.11 E-value=33 Score=27.14 Aligned_cols=88 Identities=9% Similarity=-0.108 Sum_probs=46.9
Q ss_pred cccccHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcC
Q 024742 2 LRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGE 80 (263)
Q Consensus 2 lr~Gy~~ta~~f~~e~-~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~ 80 (263)
+..|.++.|....+++ .+. +.+.+.+..+.. -....|+.+.|++++++.-. . ..+..+........-.-....|
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~-~-~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAV--CYYELAKYDLAQKDIETYFS-K-VNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHH--HHHHTTCHHHHHHHHHHHHT-T-SCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH--HHHHHhhHHHHHHHHHHHHh-c-cCchhHHHHHHHHHHHHHHHcc
Confidence 3556666666655554 222 222222222222 34467899999988876644 1 1223332222233333445668
Q ss_pred ChHHHHHHHHHhCc
Q 024742 81 NNLRAITYARKYLA 94 (263)
Q Consensus 81 ~~~eAi~yar~~l~ 94 (263)
+..+|+++.++-+.
T Consensus 89 ~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 89 QDSLAIQQYQAAVD 102 (272)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 88888888876544
No 230
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=50.91 E-value=5.1 Score=21.44 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.0
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 p~~C~~C~k~F~~~~ 16 (33)
T 1rim_A 2 KFACPECPKRFMRSD 16 (33)
T ss_dssp CCCCSSSCCCCSSHH
T ss_pred cccCCCCCchhCCHH
Confidence 368999999997643
No 231
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.89 E-value=5.6 Score=22.94 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2yti_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CCTTCCSSSCCCCSSHH
T ss_pred CcCeECCCCCcccCChh
Confidence 34589999999998654
No 232
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.69 E-value=6.6 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eon_A 10 EKPYKCQVCGKAFRVSS 26 (46)
T ss_dssp CCSCBCSSSCCBCSSHH
T ss_pred CcccCCCCCCcccCcHH
Confidence 34689999999998654
No 233
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.66 E-value=16 Score=30.63 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCceecHHHHHHHHHhCCCceecCCCCcccCc
Q 024742 223 NGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 254 (263)
Q Consensus 223 cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~~ 254 (263)
|+-.++..-+..+.+ ++..+.||+||...-.
T Consensus 204 C~~~lppq~~~~i~~-~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 204 CFIRLNDKIYTEVLT-SGDMITCPYCGRILYA 234 (256)
T ss_dssp TCCBCCHHHHHHHHH-SSSCEECTTTCCEEEC
T ss_pred CCeeeCHHHHHHHHC-CCCEEECCCCCeeEEe
Confidence 777777888888754 6678999999986543
No 234
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.66 E-value=6.5 Score=22.65 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ene_A 10 EKPYKCNECGKVFRHNS 26 (46)
T ss_dssp SSSEECSSSCCEESSHH
T ss_pred CCCeECCCCCchhCChH
Confidence 34689999999998654
No 235
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.65 E-value=5.9 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVLSA 26 (46)
T ss_dssp CCSEEETTTTEEESSHH
T ss_pred CCCeECcccChhhCCHH
Confidence 34689999999998654
No 236
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.64 E-value=6.9 Score=22.54 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ep3_A 10 EKPYRCAECGKAFTDRS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeECCCCCchhCCHH
Confidence 34689999999998654
No 237
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.53 E-value=6.6 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 9 ~k~~~C~~C~k~f~~~~ 25 (42)
T 2eos_A 9 EKPYPCEICGTRFRHLQ 25 (42)
T ss_dssp SCCBCCSSSCCCBSSHH
T ss_pred CCCEECCCCCCccCCHH
Confidence 34689999999998654
No 238
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.49 E-value=6.8 Score=22.62 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRKS 26 (46)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCEECcccCCccCCHh
Confidence 34689999999998654
No 239
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.46 E-value=6.8 Score=22.61 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2en9_A 10 KKLFKCNECKKTFTQSS 26 (46)
T ss_dssp SCCCBCTTTCCBCSSHH
T ss_pred CCCEECCccCcccCCHH
Confidence 34689999999998643
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=50.22 E-value=45 Score=22.95 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=35.3
Q ss_pred HHHhcCChHHHHHHHHhhchhhhhCCCceee---echHHHHHHHHhcCChHHHHHHHHHhC
Q 024742 36 DALQNKEVAPALAWCSDNKSRLKKSKSKFEF---QLRLQEFIELVRGENNLRAITYARKYL 93 (263)
Q Consensus 36 ~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF---~L~~q~fIeLi~~~~~~eAi~yar~~l 93 (263)
.....|+...|+.|++.--.......+ ..+ .+..+--.-+.+.|+..+|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455789999999999887655543221 111 112222224456788999988887643
No 241
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.18 E-value=2.8 Score=24.10 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=9.6
Q ss_pred eecCCCCcccCccc
Q 024742 243 ITCPRTGLVCNYSD 256 (263)
Q Consensus 243 ~~CP~c~~~~~~~~ 256 (263)
|.||.|.+.+.-.+
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 77888877766544
No 242
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.16 E-value=7.1 Score=22.43 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eme_A 10 EKPYVCDYCGKAFGLSA 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeECCCCChhhCCHH
Confidence 35689999999997653
No 243
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.15 E-value=7.5 Score=26.40 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=38.2
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
...|+.|...+.+.+.-......+|.. |.|-..+..++..+--.....|.+|++....++
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 356888888764332222334566655 999999998876542112468888887665443
No 244
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.06 E-value=6.8 Score=22.49 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2eov_A 10 EKPYKCSDCGKSFTWKS 26 (46)
T ss_dssp CCSCBCSSSCCBCSSHH
T ss_pred CCCccCCccChhhCCHH
Confidence 34689999999998643
No 245
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.05 E-value=6.9 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eml_A 10 EKPYECSVCGKAFSHRQ 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeeCCCcCCccCCHH
Confidence 35689999999998654
No 246
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.99 E-value=6.9 Score=22.52 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~F~~~~ 26 (46)
T 2em3_A 10 EKPYECKVCSKAFTQKA 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCeECCCCCcccCCHH
Confidence 34689999999998654
No 247
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=49.98 E-value=44 Score=21.82 Aligned_cols=53 Identities=6% Similarity=-0.092 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhc-CChHHHHHHHHHhC
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG-ENNLRAITYARKYL 93 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~-~~~~eAi~yar~~l 93 (263)
...|+++.|++++++.-.. .........+...-.-+.+. |+..+|+++.++-+
T Consensus 51 ~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 51 YNLERYEEAVDCYNYVINV---IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHT---SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHccCHHHHHHHHHHHHHh---CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3467777777777654221 11100112222223334456 77777777776544
No 248
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.95 E-value=7.4 Score=22.32 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDS 26 (46)
T ss_dssp CCSEECTTTCCEESSHH
T ss_pred CcCccCCCCCCCcCCHH
Confidence 35689999999998654
No 249
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.85 E-value=18 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHHHHHh---cCChHHHHHHHHhhchh
Q 024742 32 KKVIDALQ---NKEVAPALAWCSDNKSR 56 (263)
Q Consensus 32 ~~I~~~i~---~gdi~~Al~w~~~~~~~ 56 (263)
.+++.+|+ ++|++.|++|+-+|...
T Consensus 24 ~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 24 GRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 46677776 47999999999888654
No 250
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.82 E-value=7.5 Score=22.36 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2emh_A 10 ERPYICTVCGKAFTDRS 26 (46)
T ss_dssp CCSEECTTTCCEESSHH
T ss_pred CCCcCCCCCCchhCCHH
Confidence 35689999999998654
No 251
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.76 E-value=7.2 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQSS 26 (46)
T ss_dssp CCCCBCSSSCCBCSSHH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34589999999997643
No 252
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.57 E-value=7 Score=22.56 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2emf_A 10 GKHFECTECGKAFTRKS 26 (46)
T ss_dssp SCCEECSSSCCEESCHH
T ss_pred CCCeECCCCCchhCCHH
Confidence 34689999999998654
No 253
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.56 E-value=6 Score=22.77 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eq3_A 10 EKPYECNQCGKAFSVRS 26 (46)
T ss_dssp CCSSEETTTTEECSSHH
T ss_pred CCCeECCCCChhhCCHH
Confidence 34689999999998654
No 254
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.50 E-value=7.3 Score=22.46 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em2_A 10 EKPFKCKECGKAFRQNI 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCEECCcCCchhCCHH
Confidence 34689999999998653
No 255
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.42 E-value=7.6 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2eop_A 10 EKPHECRECGKSFSFNS 26 (46)
T ss_dssp CCSCBCTTTCCBCSSHH
T ss_pred CCCeeCCCCCchhCCHH
Confidence 34689999999998654
No 256
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.38 E-value=7.7 Score=22.30 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2eq0_A 10 EKPYKCHECGKVFRRNS 26 (46)
T ss_dssp CCCEECTTTCCEESSHH
T ss_pred CCCeECCCCCchhCCHH
Confidence 35689999999998654
No 257
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.20 E-value=6.4 Score=22.60 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.1
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (45)
T 2epu_A 11 KPFECTHCGKSFRAKG 26 (45)
T ss_dssp CSEEETTTTEEESSHH
T ss_pred cCccCCCCCCccCChH
Confidence 4689999999998654
No 258
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=49.15 E-value=7.3 Score=22.36 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2el4_A 10 VKPYGCSQCAKTFSLKS 26 (46)
T ss_dssp CCSEECSSSSCEESSHH
T ss_pred CCceECCCCCchhCCHH
Confidence 34689999999998654
No 259
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.11 E-value=4 Score=27.20 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecH-HHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYST-KALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~-~~~~~~~ 236 (263)
..|+.|...+.+-+.-......+|.. |.|...+..+++. ++....|.+|++ .+..++.
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPG--GHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTT--SCEEETTEEECTTTHHHHHS
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCC--ceEeECCEEecchHHHHHhc
Confidence 55888877654221111223445544 9999999999854 466779999999 6887764
No 260
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.08 E-value=7.5 Score=22.35 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CSSCBCTTTCCBCSSHH
T ss_pred CcCeECCCCCCeeCCHH
Confidence 34689999999998654
No 261
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.03 E-value=6.5 Score=22.59 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ep1_A 10 EKPYECSDCGKSFIKKS 26 (46)
T ss_dssp CCSSCCSSSCCCCSSHH
T ss_pred CCCcCCCCCCchhCCHH
Confidence 34689999999997643
No 262
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.98 E-value=7.5 Score=22.38 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (47)
T 2epx_A 10 KKPYECIECGKAFIQNT 26 (47)
T ss_dssp CCSBCCSSSCCCBSSHH
T ss_pred CCCEECCccCchhCChH
Confidence 34689999999998654
No 263
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.94 E-value=7.7 Score=22.26 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2en8_A 10 EKSHTCDECGKNFCYIS 26 (46)
T ss_dssp CSSEECTTTCCEESSHH
T ss_pred CCCeECCCcCcccCCHH
Confidence 34689999999997643
No 264
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.89 E-value=7.6 Score=22.33 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em7_A 10 EKPYKCEECGKGFICRR 26 (46)
T ss_dssp CCSEECSSSCCEESCHH
T ss_pred CcCccCCCccchhCCHH
Confidence 35689999999998653
No 265
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.88 E-value=7.2 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp SCSEECSSSCCEESSHH
T ss_pred CCCEeCCcCCCccCCHH
Confidence 35689999999998654
No 266
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.86 E-value=6.8 Score=22.60 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=13.0
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2eoh_A 11 KPYECKECRKTFIQIG 26 (46)
T ss_dssp CSCCCSSSCCCCSSHH
T ss_pred CCcCCCCcCchhCCHH
Confidence 4689999999998643
No 267
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.86 E-value=7.2 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2yth_A 10 EKPFQCEECGKRFTQNS 26 (46)
T ss_dssp SSSBCCSSSCCCBSSHH
T ss_pred CcCCCCCCCCcccCCHH
Confidence 34689999999998654
No 268
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.83 E-value=7.4 Score=22.43 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em8_A 10 EKPYKCVECGKGYKRRL 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeECcccCchhCCHH
Confidence 35689999999998643
No 269
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=48.70 E-value=7.6 Score=22.98 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 5 ~kp~~C~~C~k~F~~~~ 21 (48)
T 3iuf_A 5 DKPYACDICGKRYKNRP 21 (48)
T ss_dssp TSCEECTTTCCEESSHH
T ss_pred CcCEECCCcCcccCCHH
Confidence 34689999999997643
No 270
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.69 E-value=7.5 Score=22.41 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2em5_A 10 TKSHQCHECGRGFTLKS 26 (46)
T ss_dssp SCSEECSSSCCEESSHH
T ss_pred CCCeECCcCCCccCCHH
Confidence 34689999999997643
No 271
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.62 E-value=7.5 Score=22.35 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytj_A 10 EKPYICAECGKAFTIRS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCeECCCCChhhCCHH
Confidence 35689999999998654
No 272
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=48.52 E-value=7.8 Score=22.24 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2em9_A 10 EKPYNCKECGKSFRWAS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCeECCccccccCChH
Confidence 35689999999998643
No 273
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.50 E-value=6.6 Score=22.63 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQTS 26 (46)
T ss_dssp SCSSSCCSSCCCCSSHH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34689999999998654
No 274
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.50 E-value=7.8 Score=22.33 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2eoo_A 10 ERPYGCNECGKNFGRHS 26 (46)
T ss_dssp CCCEECSSSCCEESSHH
T ss_pred CCCEEccccCcccCCHH
Confidence 34689999999998654
No 275
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=48.45 E-value=27 Score=26.88 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=30.0
Q ss_pred eeeecccccccCC------------CCCCee-cCCCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 202 KLVCYITKELMDT------------ENPPQV-LPNGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 202 ~~~Cpi~~~~~~~------------~n~p~~-l~cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
.|.|++.+..+.. ...|+. --||-.|.... |.+-.+ .+...++|++|++.|....
T Consensus 105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 175 (190)
T 2i13_A 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175 (190)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHH
Confidence 3566666655532 223443 45777776543 322211 2345688888888887543
No 276
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.42 E-value=7.5 Score=22.10 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=13.6
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 8 ~k~~~C~~C~k~f~~~~ 24 (44)
T 2emx_A 8 EKPFGCSCCEKAFSSKS 24 (44)
T ss_dssp CCCEECSSSSCEESSHH
T ss_pred CcCccCCCCCcccCCHH
Confidence 34689999999998654
No 277
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.28 E-value=7.9 Score=22.26 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ep2_A 10 EKPYECSICGKSFTKKS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCcCCCCCCcccCCHH
Confidence 35689999999998654
No 278
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.27 E-value=6.9 Score=22.53 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2eoq_A 10 EKPFKCDICGKSFCGRS 26 (46)
T ss_dssp SCSCCCSSSCCCCSSHH
T ss_pred CCCcCCCcCCchhCCHH
Confidence 34689999999997643
No 279
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.26 E-value=7.9 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2emm_A 10 ERPHKCNECGKSFIQSA 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeeCCCCChhhCCHH
Confidence 34689999999998654
No 280
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.24 E-value=7.1 Score=22.57 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=13.0
Q ss_pred CceecCCCCcccCccc
Q 024742 241 GKITCPRTGLVCNYSD 256 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~ 256 (263)
..++|+.|++.|....
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2eom_A 11 RGHRCSDCGKFFLQAS 26 (46)
T ss_dssp SSCCCSSSCCCCSSHH
T ss_pred CCcCCCCCCCeeCChH
Confidence 4689999999998643
No 281
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.15 E-value=13 Score=24.87 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=43.3
Q ss_pred ccCCCCCCCCCCchhhhhhcCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
|.......|+.|...+.+-+.-+ .....+|.. |.|-..+..+... .+....|.+|++.+..++..
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 10 TTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG--SFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp CSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS--CEEEETTEEEEHHHHHHHTS
T ss_pred HccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC--ccEeeCCEEECHHHHHHHhC
Confidence 33333456888888765322111 123445544 9999999999764 56678999999999987753
No 282
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.10 E-value=7.6 Score=22.34 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2emy_A 10 ENPYECHECGKAFSRKY 26 (46)
T ss_dssp SCCEECSSSCCEESSHH
T ss_pred CcCcCCCCCCcccCcHH
Confidence 34689999999998643
No 283
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.08 E-value=12 Score=24.78 Aligned_cols=59 Identities=7% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|+.|...+..-.+ ......+|.. |.|-..+..+.++. .+....|.+|+..+-.++..
T Consensus 6 ~~C~~C~~~I~~~~v-~a~~~~wH~~CF~C~~C~~~L~~~~-~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 6 SGCDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAEGE-EMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCSSSCCCCSSCCB-CCSSCCBCTTTSCCSSSCCCCCSSC-CCEEETTEEECTTHHHHTSS
T ss_pred CCcccCCCEecCeeE-EeCCCCCCCCcCEeCCCCCCCCCCC-eeEeeCCEEEChHHChHhhc
Confidence 457777765543111 1223556655 99999999997433 45667999999999887743
No 284
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.04 E-value=8.2 Score=22.16 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2epz_A 10 EKPFDCIDCGKAFSDHI 26 (46)
T ss_dssp CCSBCCTTTCCCBSSHH
T ss_pred CCCeECCCCCceeCCHH
Confidence 34689999999998654
No 285
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.93 E-value=7.4 Score=22.43 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2emz_A 10 ERPFKCNECGKGFGRRS 26 (46)
T ss_dssp CCSCCCSSSCCCCSSHH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34689999999998654
No 286
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.59 E-value=15 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=21.6
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhhchhh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDNKSRL 57 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~~~~L 57 (263)
+.+++.+|+ +||++.|++|+-.|...+
T Consensus 43 ~~~A~~AL~~t~gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 43 TVVAEAALRVFGGNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 456788887 589999999999886643
No 287
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.47 E-value=7.6 Score=22.12 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (44)
T 2eou_A 10 KTTSECQECGKIFRHSS 26 (44)
T ss_dssp SCCCCCTTTCCCCSSHH
T ss_pred CcCeECCCCCcccCCHH
Confidence 34689999999998643
No 288
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.30 E-value=8.3 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2emp_A 10 VKPYMCNECGKAFSVYS 26 (46)
T ss_dssp CCSEECSSSCCEESCHH
T ss_pred CcCeECCCCCchhCCHH
Confidence 34689999999998654
No 289
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=47.30 E-value=8 Score=22.22 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ema_A 10 EKRYKCNECGKVFSRNS 26 (46)
T ss_dssp SCCEECSSSCCEESSHH
T ss_pred CcCcCCCCCcchhCCHH
Confidence 35689999999997654
No 290
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=47.25 E-value=7.8 Score=22.32 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2emk_A 10 EKPYECKECGKAFSQTT 26 (46)
T ss_dssp SCSCBCSSSCCBCSCHH
T ss_pred CCceECCCCCchhCCHH
Confidence 34589999999998654
No 291
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.19 E-value=8.1 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRRL 26 (46)
T ss_dssp CSSCBCSSSCCBCSSHH
T ss_pred CCCeeCcccCchhCCHH
Confidence 34689999999998654
No 292
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=47.12 E-value=8.2 Score=22.23 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2el6_A 10 VNPYKCSQCEKSFSGKL 26 (46)
T ss_dssp CCSEECSSSSCEESSHH
T ss_pred CCCeECCCCCcccCCHH
Confidence 34689999999997643
No 293
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.05 E-value=7.3 Score=22.42 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ysp_A 10 EKPYKCEKCGKGYNSKF 26 (46)
T ss_dssp CCSEEETTTTEEESCHH
T ss_pred CCCeECCCCCCccCCHH
Confidence 35689999999998654
No 294
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=46.99 E-value=7.9 Score=22.26 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~F~~~~ 26 (46)
T 2em0_A 10 EKTWKCRECDMCFSQAS 26 (46)
T ss_dssp CCCCCCSSSCCCCSSHH
T ss_pred CcCeECCCCCcccCCHH
Confidence 34589999999998654
No 295
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.64 E-value=9 Score=21.98 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2yso_A 10 EKSHQCRECGEIFFQYV 26 (46)
T ss_dssp CCCEECTTTCCEESSHH
T ss_pred CCCEEccccChhhCCHH
Confidence 34689999999998643
No 296
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.60 E-value=8.4 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2eq4_A 10 EKLYNCKECGKSFSRAP 26 (46)
T ss_dssp CCCCCBTTTTBCCSCHH
T ss_pred CCCeECCCCCCccCchH
Confidence 34689999999998654
No 297
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.34 E-value=8.8 Score=22.03 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2enc_A 10 EKPFKCEECGKGFYTNS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCcCCCCCCCcCCChH
Confidence 34689999999997643
No 298
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=46.34 E-value=8.5 Score=23.21 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=13.9
Q ss_pred CCCceecCCCCcccCccc
Q 024742 239 NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 239 ~~~~~~CP~c~~~~~~~~ 256 (263)
+...++|+.|++.|....
T Consensus 21 ~~k~~~C~~C~k~f~~~~ 38 (54)
T 1yui_A 21 SEQPATCPICYAVIRQSR 38 (54)
T ss_dssp SSCCEECTTTCCEESSHH
T ss_pred CCCCccCCCCCcccCCHH
Confidence 345689999999997643
No 299
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.26 E-value=11 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=27.2
Q ss_pred cCCCceecHHHHHHHHHh-CCCceecCCCCcccCcccce
Q 024742 221 LPNGYVYSTKALEEMAKK-NNGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~-~~~~~~CP~c~~~~~~~~~~ 258 (263)
--||..|....|..-... +...+.||.|++.|...++.
T Consensus 21 ~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l~ 59 (75)
T 2d9k_A 21 QHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLK 59 (75)
T ss_dssp SSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGGG
T ss_pred cccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHHH
Confidence 348888887777755321 24568999999998877654
No 300
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=46.14 E-value=7.1 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=8.8
Q ss_pred CeeeecccccccCC
Q 024742 201 SKLVCYITKELMDT 214 (263)
Q Consensus 201 s~~~Cpi~~~~~~~ 214 (263)
..|.|||++.++.+
T Consensus 2 ~k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 2 SDFCCPKCQYQAPD 15 (28)
T ss_dssp CCEECTTSSCEESS
T ss_pred CcccCccccccCcC
Confidence 34667777776654
No 301
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=46.10 E-value=18 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=19.3
Q ss_pred CCceecHHH-HHHHHH--hCCCceecCCCCcccCccc
Q 024742 223 NGYVYSTKA-LEEMAK--KNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~~-~~~~~~--~~~~~~~CP~c~~~~~~~~ 256 (263)
||..|.... |.+-.+ .+...++|+.|++.|...+
T Consensus 9 C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 9 CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 45 (88)
T ss_dssp TCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHH
Confidence 566664333 322211 2345688999998887543
No 302
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.07 E-value=5.8 Score=22.84 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=13.2
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~F~~~~ 26 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CCSSEETTTTEECSSHH
T ss_pred CCCeECCCcChhhCCHH
Confidence 34689999999998654
No 303
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.07 E-value=8.8 Score=22.08 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytq_A 10 EKPYGCSECGKAFSSKS 26 (46)
T ss_dssp CCSCBCSSSCCBCSCHH
T ss_pred CCCcCCCccChhhCChH
Confidence 34689999999998653
No 304
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=45.99 E-value=7.7 Score=25.74 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred ccCCCCCCCCCCchhhhhh---cCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKL---ASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEE 234 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l---~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~ 234 (263)
|.......|+.|...+.+. +.-+ .....+|.. |.|...+..+++. ++....|.+|++.+..+
T Consensus 10 y~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 10 YKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANK--RFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTS--CCCEETTEECCHHHHHH
T ss_pred hchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCC--ccEeECCEEEChHHhcc
Confidence 3333346788888766531 0100 112345554 9999999998753 56678999999987654
No 305
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=45.85 E-value=6.2 Score=27.32 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.5
Q ss_pred eeeecccccccCCCCCCe
Q 024742 202 KLVCYITKELMDTENPPQ 219 (263)
Q Consensus 202 ~~~Cpi~~~~~~~~n~p~ 219 (263)
+|-||.+||++-+.|.|+
T Consensus 51 ~FkCP~CgEEFyG~~Lp~ 68 (95)
T 2k5c_A 51 VFKCPVCGEEFYGKTLPR 68 (95)
T ss_dssp EEECTTTCCEEETTSSCT
T ss_pred hhcCCCccHHHhcccCCh
Confidence 589999999998888765
No 306
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.75 E-value=8.7 Score=21.82 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=13.3
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 8 ~k~~~C~~C~k~f~~~~ 24 (43)
T 2yrm_A 8 NGAFFCNECDCRFSEEA 24 (43)
T ss_dssp SCCBCCSSSCCCBSSHH
T ss_pred CCCEECCCCCCeeCChH
Confidence 34689999999997643
No 307
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.59 E-value=8.1 Score=22.20 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2en1_A 10 EKPFKCEECGKRFTQNS 26 (46)
T ss_dssp CCSEEETTTTEEESSHH
T ss_pred CCCeeCCCCCcccCCHH
Confidence 35689999999998654
No 308
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.35 E-value=7.8 Score=22.27 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|++|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2en6_A 10 EKPYGCNECGKTFSQKS 26 (46)
T ss_dssp SCCEEETTTTEEESSHH
T ss_pred CcCeECCCCCcccCchH
Confidence 34689999999998654
No 309
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.29 E-value=9.3 Score=21.91 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytd_A 10 EKPYKCSECGKAFHRHT 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CcCeECCCCCCeeCChH
Confidence 34689999999998654
No 310
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.28 E-value=7.9 Score=22.20 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytr_A 10 EKPYKCNECGKAFSQTS 26 (46)
T ss_dssp CCTTCCTTTCCCCSSHH
T ss_pred CcCcCCCCCCCccCCHH
Confidence 34589999999998654
No 311
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.22 E-value=38 Score=21.00 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=26.1
Q ss_pred Cee-cCCCceecHHHHHHHHH-hCCCceecC-CCCcccCcc
Q 024742 218 PQV-LPNGYVYSTKALEEMAK-KNNGKITCP-RTGLVCNYS 255 (263)
Q Consensus 218 p~~-l~cGhv~~~~~~~~~~~-~~~~~~~CP-~c~~~~~~~ 255 (263)
|+. --||..|....|.+-.+ .+...++|+ .|++.|...
T Consensus 10 ~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp EEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 443 45899988666654432 234568999 999998765
No 312
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=45.10 E-value=5.3 Score=21.13 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=11.8
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
.++|+.|++.|....
T Consensus 2 p~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 2 AFACPACPKRFMRSD 16 (32)
T ss_dssp CSSSSSSCTTHHHHH
T ss_pred CCCCCCCCcccCCHH
Confidence 368999999987544
No 313
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.93 E-value=9.4 Score=21.89 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~~~~~C~~C~k~f~~~~ 26 (46)
T 2ep0_A 10 EKPYKCDVCHKSFRYGS 26 (46)
T ss_dssp CCSEECSSSCCEESSHH
T ss_pred CCCeeCcccCcccCChH
Confidence 35689999999998654
No 314
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.87 E-value=8.4 Score=22.22 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytm_A 10 EKPYKCMECGKAFGDNS 26 (46)
T ss_dssp CCSSSBTTTTBCCSSHH
T ss_pred CCCcCCCCCCchhCCHH
Confidence 34689999999998654
No 315
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.70 E-value=12 Score=25.01 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=39.8
Q ss_pred ccCCCCCCCCCCchhhhhhcCCCC-CCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 171 YEDDCTKEDPLSQESFRKLASPLP-YSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 171 ~~~~~~~~cp~c~~~~~~l~~~lP-~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
|.......|..|...+.+-..-+- ....+|.. |.|...+..+++. ++....|.+|++.+..++
T Consensus 10 y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 10 YDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE--PFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSC--CEEEETTEEEETTTSSCC
T ss_pred hCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCC--ccEeeCCEEECHHHHhhh
Confidence 333334568888877652111111 23455555 9999999999743 567778899987766543
No 316
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.48 E-value=9.8 Score=24.36 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
..|+.|...+..-.+. .....+|.. |.|...+..+.+. .+....|.+|++....++
T Consensus 6 ~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 6 PICGACRRPIEGRVVN-AMGKQWHVEHFVCAKCEKPFLGH--RHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CEETTTTEECCSCEEC-CTTSBEETTTCBCTTTCCBCSSS--CCEEETTEEECHHHHHHH
T ss_pred CCCcccCCEecceEEE-ECccccccCcCEECCCCCCCCCC--ceEeECCcEECHHHHHHH
Confidence 3467776654311111 123445555 9999999998753 466789999999988766
No 317
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.42 E-value=20 Score=24.04 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.3
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhhc
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDNK 54 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~~ 54 (263)
+.+++.+|+ +||++.|++|+-.|.
T Consensus 43 ~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 43 EDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 356788887 589999999997764
No 318
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=44.17 E-value=70 Score=21.42 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=30.9
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCcee--eechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFE--FQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~Le--F~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
...|+++.|++++++.-..-........ .......-.-+.+.|+..+|+++.++-+.
T Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 49 FEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4578888888888766443322111100 11222222234456788888887775443
No 319
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.98 E-value=21 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHh-c-C-ChHHHHHHHHhhchhh
Q 024742 32 KKVIDALQ-N-K-EVAPALAWCSDNKSRL 57 (263)
Q Consensus 32 ~~I~~~i~-~-g-di~~Al~w~~~~~~~L 57 (263)
.+.+.+|+ . | |++.|++|+-+|....
T Consensus 24 ~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 24 DACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 56788887 2 3 7999999999886653
No 320
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.76 E-value=25 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.9
Q ss_pred HHHHHHHh--cCChHHHHHHHHhhchh
Q 024742 32 KKVIDALQ--NKEVAPALAWCSDNKSR 56 (263)
Q Consensus 32 ~~I~~~i~--~gdi~~Al~w~~~~~~~ 56 (263)
.+.+.+|+ +||++.|++|+-+|...
T Consensus 44 ~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 44 NRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 46777777 57999999999888553
No 321
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.73 E-value=19 Score=23.25 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCceecHHH-HHHHHH---h--CCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAK---K--NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~---~--~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|.... |.+-.+ . ....++|++|++.|...+
T Consensus 12 ~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 12 ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp SSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred CCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHH
Confidence 4777776544 332211 1 245799999999997654
No 322
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.16 E-value=7.9 Score=25.23 Aligned_cols=58 Identities=7% Similarity=0.125 Sum_probs=39.3
Q ss_pred CCCCCCchhhhhhcCCCC-CCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLP-YSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP-~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|+.|...+.+-+.-+- ....+|.. |.|...+..+.+. ++....|.+|++....++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK--SFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSS--SEEEETTEEEEHHHHHHHT
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCC--ccCccCCeEECHHHHhHHh
Confidence 457778776543211111 22445555 8999999998764 5777899999999998764
No 323
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.07 E-value=8 Score=26.20 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|+.|...+.+-+.-.-....+|.. |.|...+..+++ + +....|.+|++....++.
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~--~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-E--YISKDGVPYCESDYHAQF 73 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-C--CEEETTEEECTTHHHHHT
T ss_pred CCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-C--eEEECCEEECHHHHHHHc
Confidence 56888877654211111123445554 999999999974 2 667899999999998775
No 324
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=42.90 E-value=8.2 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=11.3
Q ss_pred ceecCCCCcccCccc
Q 024742 242 KITCPRTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP~c~~~~~~~~ 256 (263)
++.||.|.+......
T Consensus 6 ~vqcpvcqq~mpaah 20 (29)
T 3vhs_A 6 QVQCPVCQQMMPAAH 20 (29)
T ss_dssp EEECTTTCCEEEGGG
T ss_pred eeeChHHHHhCcHHH
Confidence 578999988776544
No 325
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.28 E-value=9.2 Score=21.98 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.4
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytt_A 10 EKPYQCSECGKSFSGSY 26 (46)
T ss_dssp CCTTCCSSSCCCCSSHH
T ss_pred CCCeeCCCCCcccCCHH
Confidence 34689999999998654
No 326
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.09 E-value=21 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHh--cC-ChHHHHHHHHhhc
Q 024742 32 KKVIDALQ--NK-EVAPALAWCSDNK 54 (263)
Q Consensus 32 ~~I~~~i~--~g-di~~Al~w~~~~~ 54 (263)
.+++.+|+ .| |++.|++|+-+|.
T Consensus 34 ~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 34 ARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 57788887 45 8999999997764
No 327
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=42.04 E-value=37 Score=19.00 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=17.1
Q ss_pred cCCCceecHHHHH-HHHH--hCCCceecCCCC
Q 024742 221 LPNGYVYSTKALE-EMAK--KNNGKITCPRTG 249 (263)
Q Consensus 221 l~cGhv~~~~~~~-~~~~--~~~~~~~CP~c~ 249 (263)
-.||..|....-. +-.+ .+...+.||.|+
T Consensus 14 ~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 14 PVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp TTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 4577777655433 2221 234568999986
No 328
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.01 E-value=37 Score=21.70 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=21.7
Q ss_pred cCCCceecHHH-HHHHHHh--CCCceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKA-LEEMAKK--NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~-~~~~~~~--~~~~~~CP~c~~~~~~~~ 256 (263)
-.||..|.... |.+-.+. +...++|++|++.|...+
T Consensus 22 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 22 DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp SSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHH
T ss_pred CCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHH
Confidence 34666665443 3332221 234689999999997654
No 329
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.22 E-value=28 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=19.3
Q ss_pred HHHHHHHh-c-C-ChHHHHHHHHhhchh
Q 024742 32 KKVIDALQ-N-K-EVAPALAWCSDNKSR 56 (263)
Q Consensus 32 ~~I~~~i~-~-g-di~~Al~w~~~~~~~ 56 (263)
.+++.+|+ . + +++.|++|+-+|...
T Consensus 24 ~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 24 HTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 56778887 2 3 899999999888653
No 330
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.67 E-value=33 Score=21.96 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=22.0
Q ss_pred cCCCceecHHH-HHHHHH--hCC--CceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKA-LEEMAK--KNN--GKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~-~~~~~~--~~~--~~~~CP~c~~~~~~~~ 256 (263)
--||..|.... |.+-.. ... ..++|+.|++.|....
T Consensus 19 ~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 19 YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp TTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 34777776543 333322 122 4699999999997653
No 331
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=40.47 E-value=24 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=18.2
Q ss_pred HHHHHHHHh--cCChHHHHHHHHhh
Q 024742 31 AKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 31 ~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
+.+++.+|+ ++|++.|++|+-.+
T Consensus 43 r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 43 RTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 346777887 58999999998765
No 332
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.91 E-value=22 Score=23.72 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=38.1
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
..|+.|...+..-.+. -....+|.. |.|...+..++.. .+ ...|.+|++.+..++
T Consensus 16 ~~C~~C~~~I~~~~v~-a~~~~~H~~CF~C~~C~~~L~~~--~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 16 YICQKCHAIIDEQPLI-FKNDPYHPDHFNCANCGKELTAD--AR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp CBCTTTCCBCCSCCCC-CSSSCCCTTTSBCSSSCCBCCTT--CE-EETTEEECHHHHHTT
T ss_pred CCCccCCCEecceEEE-ECcceeCCCCCEeCCCCCccCCC--CE-eECCEEeCHHHHHHh
Confidence 5588887765421111 123556655 9999999999865 34 669999999998765
No 333
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.78 E-value=48 Score=21.03 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCceecHHHHH-HHHH--hCCCceecCCCCccc
Q 024742 223 NGYVYSTKALE-EMAK--KNNGKITCPRTGLVC 252 (263)
Q Consensus 223 cGhv~~~~~~~-~~~~--~~~~~~~CP~c~~~~ 252 (263)
||..|....-. +-.+ .+...++|++|++.|
T Consensus 46 C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp TCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 66666543322 1111 123446666666655
No 334
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.39 E-value=16 Score=24.98 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=39.1
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|..|...+....+. .....+|.. |.|-..+..+.+.+ +....|.+|++.+..++.
T Consensus 26 ~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVK-ARDKYRHPECFVCADCNLNLKQKG--YFFVEGELYCETHARART 83 (89)
T ss_dssp CBCTTTCCBCCSCCEE-SSSCEECTTTCCCSSSCCCTTTSC--CEEETTEEECHHHHHHHS
T ss_pred CCcccCCCEecccEEE-ECCceECccCCEecCCCCCCCCCC--eEeECCEEECHHHHHHHh
Confidence 4588887765531111 123455655 99999999997653 455699999999998774
No 335
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=39.17 E-value=18 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=21.6
Q ss_pred CCCceecHHH-HHHHHHhCCCceecCCCCcccCccc
Q 024742 222 PNGYVYSTKA-LEEMAKKNNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 222 ~cGhv~~~~~-~~~~~~~~~~~~~CP~c~~~~~~~~ 256 (263)
.||..|.... |.+-...-...++|+.|++.|....
T Consensus 79 ~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~ 114 (129)
T 2wbt_A 79 LCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTD 114 (129)
T ss_dssp TTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHH
T ss_pred CCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHH
Confidence 3777776544 3332221145689999999997654
No 336
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=39.13 E-value=36 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHhhch
Q 024742 26 EVFQEAKKVIDALQNKEVAPALAWCSDNKS 55 (263)
Q Consensus 26 ~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~ 55 (263)
....+-..|.++|++||.+.|-+.+.+|-.
T Consensus 98 ~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~ 127 (140)
T 3sxm_A 98 VSNREHKELIERIISGDKEGAIEKLKEHLK 127 (140)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666677888888888888777776643
No 337
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=38.75 E-value=8.2 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=15.9
Q ss_pred cCCCceecHHHHHHHHHhCCCceecCCCCccc
Q 024742 221 LPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 252 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~ 252 (263)
..|||+|... .....||.||...
T Consensus 136 ~~Cg~~~~~~---------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 136 IGCGRKFSTL---------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSSCCEESSC---------CGGGBCTTTCCBE
T ss_pred CCCCCcccCC---------CCCCcCCCCCCcc
Confidence 5688888643 1235899999874
No 338
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.17 E-value=15 Score=23.70 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=39.1
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
..|..|...+..-.+. .....+|.. |.|-..+..+.+. .+....|.+|++.+..++..
T Consensus 6 ~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIK-AMNNSWHPECFRCDLCQEVLADI--GFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCCSCCEE-ETTEEECTTTSBCSSSCCBCSSS--CCEEETTEEECHHHHHHHHC
T ss_pred CcCccCCCEecceEEE-ECcccccccCCEeCCCCCcCCCC--ccEeECCeEECHHHhhhhcC
Confidence 4577777654321111 112445555 9999999999875 36678999999999988754
No 339
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=37.30 E-value=1e+02 Score=21.87 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=10.3
Q ss_pred HHHhcCChHHHHHHHHh
Q 024742 36 DALQNKEVAPALAWCSD 52 (263)
Q Consensus 36 ~~i~~gdi~~Al~w~~~ 52 (263)
..+..|+++.|++++++
T Consensus 27 ~~~~~g~~~~A~~~~~~ 43 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQA 43 (142)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHH
Confidence 34456777777766654
No 340
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=36.94 E-value=16 Score=26.54 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=9.5
Q ss_pred HHHHHHHHhcC-ChHHHH
Q 024742 31 AKKVIDALQNK-EVAPAL 47 (263)
Q Consensus 31 ~~~I~~~i~~g-di~~Al 47 (263)
+.+|.+.|+.| .+..|+
T Consensus 51 l~~i~~~l~~G~sls~Al 68 (123)
T 3c1q_A 51 LVAVRAKVTEGYTLSDSL 68 (123)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
Confidence 45566666655 455555
No 341
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=36.90 E-value=14 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.8
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHhh
Q 024742 30 EAKKVIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 30 ~~~~I~~~i~--~gdi~~Al~w~~~~ 53 (263)
.+.+++.+|+ +||++.|++|+-.+
T Consensus 80 d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 80 DDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3456778887 69999999998654
No 342
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=36.87 E-value=12 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCCeecCCCceecHHHHHHHHHhCCCceecCCCCcccC
Q 024742 216 NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 253 (263)
Q Consensus 216 n~p~~l~cGhv~~~~~~~~~~~~~~~~~~CP~c~~~~~ 253 (263)
|.-.+-=+-|.+|.+||..|.+. .-.||+|++...
T Consensus 38 ~k~LV~C~dHYLCl~CLtlmL~~---SdrCpIC~~pLP 72 (99)
T 2ko5_A 38 NKGLVECNNHYLCLNCLTLLLSV---SNRCPICKMPLP 72 (99)
T ss_dssp CSSEEECSSCEEEHHHHHHTCSS---SSEETTTTEECC
T ss_pred cCCeeeecchhhHHHHHHHHHhh---ccCCcccCCcCC
Confidence 33456667899999999999753 348999998754
No 343
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.82 E-value=39 Score=23.22 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=19.9
Q ss_pred cCCCceecHHHH-HHHHHh--CCCceecCCCCcccCcc
Q 024742 221 LPNGYVYSTKAL-EEMAKK--NNGKITCPRTGLVCNYS 255 (263)
Q Consensus 221 l~cGhv~~~~~~-~~~~~~--~~~~~~CP~c~~~~~~~ 255 (263)
-.||..|....- .+-.+. +...++|++|++.|...
T Consensus 41 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 41 GVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78 (110)
T ss_dssp TTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCH
T ss_pred CCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCH
Confidence 457777765433 222211 23457888888887654
No 344
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=36.71 E-value=12 Score=24.93 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.7
Q ss_pred CceecCCCCcccCc
Q 024742 241 GKITCPRTGLVCNY 254 (263)
Q Consensus 241 ~~~~CP~c~~~~~~ 254 (263)
..++||.|++.+..
T Consensus 8 ~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 8 ITVNCPTCGKTVVW 21 (68)
T ss_dssp CEEECTTTCCEEEC
T ss_pred CcCcCCCCCCcccc
Confidence 45799999999875
No 345
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=36.68 E-value=87 Score=20.39 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=7.0
Q ss_pred cCChHHHHHHHHh
Q 024742 40 NKEVAPALAWCSD 52 (263)
Q Consensus 40 ~gdi~~Al~w~~~ 52 (263)
.|+++.|++++++
T Consensus 51 ~~~~~~A~~~~~~ 63 (118)
T 1elw_A 51 KGDYQKAYEDGCK 63 (118)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 4555555555544
No 346
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=36.53 E-value=1.1e+02 Score=22.68 Aligned_cols=50 Identities=6% Similarity=-0.156 Sum_probs=23.1
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHh
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKY 92 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~ 92 (263)
...|+++.|++++++.-. +...+... +...=.-+.+.|+..+|+.+.++-
T Consensus 47 ~~~g~~~eA~~~~~~al~-~~P~~~~~----~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCI-YDFYNVDY----IMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCCHHH----HHHHHHHHHHHccHHHHHHHHHHH
Confidence 346777777777654311 11111111 111112233456666666666544
No 347
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=36.35 E-value=12 Score=30.54 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=33.5
Q ss_pred hh-cCCCCCCCCcCCeeeecccccccCCCCCCeecCCCceecHHHHHH
Q 024742 188 KL-ASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEE 234 (263)
Q Consensus 188 ~l-~~~lP~~~~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~ 234 (263)
++ .+++|..-+...+.+|+++||..-+.. ..+.+|..+|+.|..+
T Consensus 157 ~v~~~~~p~~~~~~~~~~C~~CGE~~~~~~--~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 157 EIDGFTFEPVKKNGAKVRCDVCGEYTYEAD--AKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EESSCCCCCCCCCCCEEECTTTCCEEEGGG--CEEETTEEECHHHHHC
T ss_pred EeeccCCCCCCCCCCceECCCCCCchhhcc--eeeeCCcEEChhhhcc
Confidence 35 566776666556888999999987732 3467899999999765
No 348
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=35.46 E-value=58 Score=18.53 Aligned_cols=30 Identities=7% Similarity=-0.089 Sum_probs=18.1
Q ss_pred cCCCceecHHHHHHHHHh---CCCceecCCCCc
Q 024742 221 LPNGYVYSTKALEEMAKK---NNGKITCPRTGL 250 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~---~~~~~~CP~c~~ 250 (263)
-.||..|....-.+.-.+ +...++|++|++
T Consensus 16 ~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 16 EICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp TTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 457777766554332222 245689999985
No 349
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.19 E-value=14 Score=27.12 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=15.6
Q ss_pred cCCCceecHHHHHHHHHhCCCce-ecCCCCcc
Q 024742 221 LPNGYVYSTKALEEMAKKNNGKI-TCPRTGLV 251 (263)
Q Consensus 221 l~cGhv~~~~~~~~~~~~~~~~~-~CP~c~~~ 251 (263)
..|||.|..+ .... +||.|+..
T Consensus 77 ~~CG~~~e~~---------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 77 KDCSHVFKPN---------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSSCEECSC---------CSTTCCCSSSSSC
T ss_pred CCCCCEEeCC---------CCCCCcCccccCC
Confidence 5788888651 2346 89999876
No 350
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=35.10 E-value=19 Score=20.83 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=13.6
Q ss_pred CCceecC--CCCcccCcccc
Q 024742 240 NGKITCP--RTGLVCNYSDL 257 (263)
Q Consensus 240 ~~~~~CP--~c~~~~~~~~~ 257 (263)
...++|+ .|++.|....-
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~ 35 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYN 35 (47)
T ss_dssp TTEEECCCTTCCCEECSSSS
T ss_pred CCCeECCCCCCCCccCCHHH
Confidence 4568995 79999987654
No 351
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.36 E-value=1.1e+02 Score=22.08 Aligned_cols=52 Identities=13% Similarity=-0.000 Sum_probs=23.0
Q ss_pred HHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhC
Q 024742 37 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYL 93 (263)
Q Consensus 37 ~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l 93 (263)
....|+++.|++++++.-.. .. .+ ..++...=.-+.+.|+..+|+.+.++-+
T Consensus 21 ~~~~g~~~~A~~~~~~al~~-~p--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSI-AP--AN--PIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-ST--TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CC--cC--HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34456666666665543211 11 11 1112222223344566666666665443
No 352
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=34.01 E-value=16 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=16.2
Q ss_pred CCceecCCCCcccCcccceecc
Q 024742 240 NGKITCPRTGLVCNYSDLVKAY 261 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~~~v~ 261 (263)
....+|| ||+.+..+.++.+.
T Consensus 19 ~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 19 AKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp CSEEEET-TTEEEECCSSSCBS
T ss_pred CcEEECC-CCCeeeeceEEEEE
Confidence 3457999 99999988877653
No 353
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.91 E-value=6.5 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.2
Q ss_pred ceecCCCCcc
Q 024742 242 KITCPRTGLV 251 (263)
Q Consensus 242 ~~~CP~c~~~ 251 (263)
..+||.|+..
T Consensus 36 dw~CP~Cga~ 45 (55)
T 2v3b_B 36 DWVCPDCGVG 45 (55)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4799999974
No 354
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.71 E-value=19 Score=20.48 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.3
Q ss_pred CCceecCC--CCcccCccc
Q 024742 240 NGKITCPR--TGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~--c~~~~~~~~ 256 (263)
...++|+. |++.|....
T Consensus 7 ekp~~C~~~~C~k~F~~~~ 25 (38)
T 2eln_A 7 GILLKCPTDGCDYSTPDKY 25 (38)
T ss_dssp CCCEECSSSSCCCEESCHH
T ss_pred CCCCCCCCCCCCCccCCHH
Confidence 45689986 999998654
No 355
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.59 E-value=41 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHh-c--CChHHHHHHHHhhchh
Q 024742 32 KKVIDALQ-N--KEVAPALAWCSDNKSR 56 (263)
Q Consensus 32 ~~I~~~i~-~--gdi~~Al~w~~~~~~~ 56 (263)
.+++.+|+ . +|++.|++|+-+|...
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 56788876 3 5899999999888554
No 356
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=33.20 E-value=1.9e+02 Score=23.31 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCC--------CCHHHHHHHH-HHHHHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHH--
Q 024742 7 YETAEKLAESSNIQDL--------VDIEVFQEAK-KVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE-- 75 (263)
Q Consensus 7 ~~ta~~f~~e~~i~~~--------~d~~~~~~~~-~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIe-- 75 (263)
.++...+++..|++.. .+.+.+..+. .|...+..|+++.|++.+++...... ........+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHH
Confidence 4667788888887631 2344455544 47888899999999999877533211 1111110011111111
Q ss_pred HHhcCChHHHHHHHHHhCc
Q 024742 76 LVRGENNLRAITYARKYLA 94 (263)
Q Consensus 76 Li~~~~~~eAi~yar~~l~ 94 (263)
....++..+|+.|.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2245688999999987664
No 357
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=33.08 E-value=1.4e+02 Score=21.61 Aligned_cols=13 Identities=15% Similarity=-0.051 Sum_probs=6.6
Q ss_pred hcCChHHHHHHHH
Q 024742 39 QNKEVAPALAWCS 51 (263)
Q Consensus 39 ~~gdi~~Al~w~~ 51 (263)
..|+++.|++.++
T Consensus 33 ~~g~~~~A~~~~~ 45 (148)
T 2vgx_A 33 QSGXYEDAHXVFQ 45 (148)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 3455555555544
No 358
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=33.02 E-value=17 Score=18.52 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.6
Q ss_pred ceecC--CCCcccCccc
Q 024742 242 KITCP--RTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP--~c~~~~~~~~ 256 (263)
.++|+ .|++.|....
T Consensus 2 p~~C~~~~C~k~f~~~~ 18 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSD 18 (31)
T ss_dssp CCBCCSTTCCCBCSSHH
T ss_pred CcCCcCCCCCcccCCHh
Confidence 36897 9999997643
No 359
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=32.49 E-value=1.1e+02 Score=20.27 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHhcCChHHHHHHHHhh
Q 024742 37 ALQNKEVAPALAWCSDN 53 (263)
Q Consensus 37 ~i~~gdi~~Al~w~~~~ 53 (263)
....|+++.|++++++.
T Consensus 22 ~~~~~~~~~A~~~~~~~ 38 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKA 38 (131)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 33456666666665543
No 360
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=32.38 E-value=12 Score=26.82 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=29.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCcchhh--hhHHHHHHHHHH
Q 024742 72 EFIELVRGENNLRAITYARKYLAPWGA--THMKELQRVMAT 110 (263)
Q Consensus 72 ~fIeLi~~~~~~eAi~yar~~l~~~~~--~~~~ei~~~~~l 110 (263)
+.+|||+.++-..|+.|+++.+..+.. ...+|++.+++.
T Consensus 56 r~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~~ 96 (100)
T 3izc_k 56 RLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAA 96 (100)
T ss_dssp HHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 567888888777899999999887754 345667666553
No 361
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.77 E-value=20 Score=23.20 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=38.4
Q ss_pred CCCCCCchhhhhh--cCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 177 KEDPLSQESFRKL--ASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 177 ~~cp~c~~~~~~l--~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
..|+.|...+.+. +.-+ .....+|.. |.|...+..+++ ..+....|.+|++.+..++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVG--RGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTT--SCCEECSSSEECHHHHHTC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCC--CccEeECCEEEChhHcCcc
Confidence 4577887765431 0111 123556655 999999999874 3566789999999988665
No 362
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=31.25 E-value=23 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCceecCC--CCcccCccc
Q 024742 240 NGKITCPR--TGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~--c~~~~~~~~ 256 (263)
...++|++ |++.|....
T Consensus 6 ~k~~~C~~~~C~k~f~~~~ 24 (37)
T 1va1_A 6 KKQHICHIQGCGKVYGKTS 24 (37)
T ss_dssp CCCEECCSTTCCCEESCHH
T ss_pred CCCCCCCCCCCCCccCCHH
Confidence 34689985 999997654
No 363
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=31.15 E-value=2e+02 Score=22.88 Aligned_cols=55 Identities=22% Similarity=0.106 Sum_probs=24.8
Q ss_pred hcCChHHHHHHHHhhchhhhhCCCc----eeeechHHHHHHHHhcCChHHHHHHHHHhC
Q 024742 39 QNKEVAPALAWCSDNKSRLKKSKSK----FEFQLRLQEFIELVRGENNLRAITYARKYL 93 (263)
Q Consensus 39 ~~gdi~~Al~w~~~~~~~L~~~~s~----LeF~L~~q~fIeLi~~~~~~eAi~yar~~l 93 (263)
..|+++.|++++++.-....+.+.. -........=.-+.+.|+..+|+.+.++-+
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566666666665554433221110 001111222222344566666666666543
No 364
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=31.11 E-value=1.2e+02 Score=23.45 Aligned_cols=52 Identities=8% Similarity=-0.256 Sum_probs=27.3
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
...|+++.|++++++.-..- .. . ..+....-.-+...|+..+|+++.++-+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~-~~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASD-SR--N--ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TT--C--HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHC-cC--c--HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44677777777776543221 11 1 11222222334456777777777776655
No 365
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=31.03 E-value=45 Score=21.33 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCceecHHHH-HHHHHhCCCceecCC---CCcccCcc
Q 024742 223 NGYVYSTKAL-EEMAKKNNGKITCPR---TGLVCNYS 255 (263)
Q Consensus 223 cGhv~~~~~~-~~~~~~~~~~~~CP~---c~~~~~~~ 255 (263)
||..|....- .+-.+.-.+ ++|+. |++.|...
T Consensus 39 C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~~~ 74 (85)
T 2j7j_A 39 CDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTW 74 (85)
T ss_dssp CCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEESSH
T ss_pred CcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccCCH
Confidence 7777654433 222111112 67777 77777543
No 366
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.02 E-value=20 Score=24.80 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=8.1
Q ss_pred CCceecCCCCcc
Q 024742 240 NGKITCPRTGLV 251 (263)
Q Consensus 240 ~~~~~CP~c~~~ 251 (263)
+..++||.|+..
T Consensus 25 ~~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 25 NEDHACPNCGED 36 (83)
T ss_dssp HSCEECSSSCCE
T ss_pred cccCcCCCCCCc
Confidence 346788888764
No 367
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=30.88 E-value=32 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCceecCCCCcc
Q 024742 230 KALEEMAKKNNGKITCPRTGLV 251 (263)
Q Consensus 230 ~~~~~~~~~~~~~~~CP~c~~~ 251 (263)
+-++++........+||.|++.
T Consensus 15 K~vkkie~~q~~ky~C~fCgk~ 36 (73)
T 1ffk_W 15 VRVRDVEIKHKKKYKCPVCGFP 36 (73)
T ss_pred HHHHHHHHhcccCccCCCCCCc
Confidence 3344443344567899999873
No 368
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=30.46 E-value=41 Score=27.20 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.6
Q ss_pred HHHHHh--cCChHHHHHHHHhh
Q 024742 34 VIDALQ--NKEVAPALAWCSDN 53 (263)
Q Consensus 34 I~~~i~--~gdi~~Al~w~~~~ 53 (263)
..++|. +||++.|++|+++.
T Consensus 21 CKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 466776 69999999999875
No 369
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=29.64 E-value=12 Score=28.05 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.5
Q ss_pred CCceecCCCCcccCcccce
Q 024742 240 NGKITCPRTGLVCNYSDLV 258 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~~~ 258 (263)
.|..+||.||.+|..++=+
T Consensus 97 EG~L~Cp~cgr~ypI~~GI 115 (125)
T 3q87_A 97 EGSLRCDMCGLIYPIKGSI 115 (125)
T ss_dssp EEEEEETTTCCEEEEETTE
T ss_pred EEEEECCCCCCEeeccCCc
Confidence 4789999999999877643
No 370
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=29.61 E-value=1.2e+02 Score=19.83 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=6.7
Q ss_pred hcCChHHHHHHHHh
Q 024742 39 QNKEVAPALAWCSD 52 (263)
Q Consensus 39 ~~gdi~~Al~w~~~ 52 (263)
..|+++.|++++++
T Consensus 21 ~~~~~~~A~~~~~~ 34 (125)
T 1na0_A 21 KQGDYDEAIEYYQK 34 (125)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 34555555554443
No 371
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.38 E-value=35 Score=22.59 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeec-CCCceecHHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVL-PNGYVYSTKALEEMA 236 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l-~cGhv~~~~~~~~~~ 236 (263)
...|+.|...+....+. .....+|.. |.|...+..+++. .+.. ..|.+|++....++.
T Consensus 15 ~~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 15 LEKCATCSQPILDRILR-AMGKAYHPGCFTCVVCHRGLDGI--PFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CCBCTTTCCBCCSCCEE-ETTEEECTTTCBCSSSCCBCTTS--CEECCTTCCCEEHHHHHHHT
T ss_pred CCccccCCCeecceeEE-ECCccccHHhcCcccCCCccCCC--eeEECCCCEEECHHHHHHHh
Confidence 45688887765421111 112445654 9999999999743 4554 489999999998774
No 372
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.26 E-value=28 Score=17.67 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=11.9
Q ss_pred ceecC--CCCcccCccc
Q 024742 242 KITCP--RTGLVCNYSD 256 (263)
Q Consensus 242 ~~~CP--~c~~~~~~~~ 256 (263)
.++|+ .|++.|....
T Consensus 3 ~~~C~~~~C~k~f~~~~ 19 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNH 19 (32)
T ss_dssp SBCCCCTTCCCCBSSSH
T ss_pred CCcCcCCCCCCccCCHH
Confidence 47898 8999997654
No 373
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=29.16 E-value=1.4e+02 Score=22.25 Aligned_cols=85 Identities=16% Similarity=-0.055 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhc-CC
Q 024742 3 RMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG-EN 81 (263)
Q Consensus 3 r~Gy~~ta~~f~~e~~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~-~~ 81 (263)
+.|.++.|....+++--....+.+.+..+- .-....|+.+.|++++++.-..- .. ... .+...-.-+... |+
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~-~~--~~~--~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDPKNELAWLVRA--EIYQYLKVNDKAQESFRQALSIK-PD--SAE--INNNYGWFLCGRLNR 92 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHC-TT--CHH--HHHHHHHHHHTTTCC
T ss_pred HHhhHHHHHHHHHHHHHhCccchHHHHHHH--HHHHHcCChHHHHHHHHHHHHhC-CC--ChH--HHHHHHHHHHHhcCc
Confidence 455566555544443111122233322222 22334677777777766543211 11 111 112222233455 67
Q ss_pred hHHHHHHHHHhCc
Q 024742 82 NLRAITYARKYLA 94 (263)
Q Consensus 82 ~~eAi~yar~~l~ 94 (263)
..+|+.+.++-+.
T Consensus 93 ~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 93 PAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 7777777765544
No 374
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=29.05 E-value=20 Score=17.52 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.3
Q ss_pred ceecC--CCCcccCcc
Q 024742 242 KITCP--RTGLVCNYS 255 (263)
Q Consensus 242 ~~~CP--~c~~~~~~~ 255 (263)
.++|+ .|++.|...
T Consensus 2 ~~~C~~~~C~k~f~~~ 17 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDR 17 (29)
T ss_dssp CEEECSTTTCEEESSH
T ss_pred CCCCcCCcCcCccCCH
Confidence 37899 999998754
No 375
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=28.93 E-value=1.5e+02 Score=20.74 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=8.6
Q ss_pred HhcCChHHHHHHHHh
Q 024742 38 LQNKEVAPALAWCSD 52 (263)
Q Consensus 38 i~~gdi~~Al~w~~~ 52 (263)
...|+++.|+++.++
T Consensus 24 ~~~g~~~~A~~~~~~ 38 (126)
T 4gco_A 24 FKKGDYPTAMRHYNE 38 (126)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 345666666666544
No 376
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.75 E-value=11 Score=24.23 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCCCchhhhhhcCCC-CCCCCcC---CeeeecccccccCCCCCCeecCCCceec-HHHHHHH
Q 024742 178 EDPLSQESFRKLASPL-PYSKQHH---SKLVCYITKELMDTENPPQVLPNGYVYS-TKALEEM 235 (263)
Q Consensus 178 ~cp~c~~~~~~l~~~l-P~~~~~~---s~~~Cpi~~~~~~~~n~p~~l~cGhv~~-~~~~~~~ 235 (263)
.|+.|...+.+-..-+ .....+| .=|.|-..+..+++. .+....|.+|+ +++..++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~--~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ--KFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTS--CCEEETTEEESSHHHHHTT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCC--ceEEECCEEecCHHHhhhh
Confidence 4677766554211111 1134556 559999999998643 46778899999 7776543
No 377
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.52 E-value=18 Score=26.10 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=10.2
Q ss_pred ceecCCCCcccCc
Q 024742 242 KITCPRTGLVCNY 254 (263)
Q Consensus 242 ~~~CP~c~~~~~~ 254 (263)
.-.||.||+..+.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3589999998764
No 378
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.22 E-value=17 Score=24.16 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=39.5
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAK 237 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~~ 237 (263)
...|+.|...+..-.+. -....+|.. |.|-..+..+++. .+....|.+|++.+..++..
T Consensus 15 ~~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVK-LRDRHRHPECYVCTDCGTNLKQK--GHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCSSSCCCCCSSCEE-CSSCEECTTTTSCSSSCCCHHHH--CCEESSSCEECHHHHHHHHS
T ss_pred CCccccCCCCccCcEEE-ECcceeCcCcCeeCCCCCCCCCC--CeEeECCEEECHHHHHHHhC
Confidence 35688887765431111 112455655 8999999988642 35677999999999988764
No 379
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=27.67 E-value=44 Score=28.76 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=16.6
Q ss_pred HHHHHHh--cCChHHHHHHHHh
Q 024742 33 KVIDALQ--NKEVAPALAWCSD 52 (263)
Q Consensus 33 ~I~~~i~--~gdi~~Al~w~~~ 52 (263)
...++|. +||++.|++|+++
T Consensus 21 dCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 21 NCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3467776 6999999999998
No 380
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.41 E-value=24 Score=22.49 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=4.6
Q ss_pred cCCCceecH
Q 024742 221 LPNGYVYST 229 (263)
Q Consensus 221 l~cGhv~~~ 229 (263)
..||.|+..
T Consensus 34 ~~CGlVl~e 42 (58)
T 1dl6_A 34 PECGLVVGD 42 (58)
T ss_dssp TTTCCEECC
T ss_pred CCCCCEEec
Confidence 455555544
No 381
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.28 E-value=37 Score=18.48 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=15.9
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcC
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHH 200 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~ 200 (263)
...||.|.+.+.+.+.-.-....+|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~H 27 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWH 27 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCC
T ss_pred CCcCCccCCEEecceeEEECCeEec
Confidence 3569999998877755443334344
No 382
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.22 E-value=24 Score=23.00 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.5
Q ss_pred CCceecCCCCcccCccc
Q 024742 240 NGKITCPRTGLVCNYSD 256 (263)
Q Consensus 240 ~~~~~CP~c~~~~~~~~ 256 (263)
...++|+.|++.|....
T Consensus 11 ekpy~C~~CgK~F~~~s 27 (66)
T 2epp_A 11 AGILPCGLCGKVFTDAN 27 (66)
T ss_dssp CCCCCCTTTCCCCSCHH
T ss_pred ccCcCCCCCCCccCCHH
Confidence 34689999999998653
No 383
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=26.90 E-value=51 Score=23.02 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHhhchhhhhCC
Q 024742 22 LVDIEVFQEAKKVIDALQNK--EVAPALAWCSDNKSRLKKSK 61 (263)
Q Consensus 22 ~~d~~~~~~~~~I~~~i~~g--di~~Al~w~~~~~~~L~~~~ 61 (263)
..|++.+....+|=+.|.+| .|+.|...+.+|+....+..
T Consensus 38 iqDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~~y~kk~ 79 (104)
T 3hkz_Y 38 IQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEYEKRD 79 (104)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHHHHhhhh
Confidence 56899999999999999998 56899999999988776543
No 384
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=26.74 E-value=59 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHHh---cCChHHHHHHHHhhchh
Q 024742 33 KVIDALQ---NKEVAPALAWCSDNKSR 56 (263)
Q Consensus 33 ~I~~~i~---~gdi~~Al~w~~~~~~~ 56 (263)
+.+.+++ +++++.|++|+-+|.+.
T Consensus 19 ~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 19 ACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 4567776 34799999999998664
No 385
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.33 E-value=16 Score=29.25 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=6.4
Q ss_pred ecCCCCcc
Q 024742 244 TCPRTGLV 251 (263)
Q Consensus 244 ~CP~c~~~ 251 (263)
+||.|+..
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 88888874
No 386
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.08 E-value=27 Score=21.80 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=8.2
Q ss_pred ceecCCCCcccCcc
Q 024742 242 KITCPRTGLVCNYS 255 (263)
Q Consensus 242 ~~~CP~c~~~~~~~ 255 (263)
.++|+.|++.|...
T Consensus 18 ~~~C~~C~k~f~~~ 31 (73)
T 2ctu_A 18 SQKCSKCGIIFIRR 31 (73)
T ss_dssp EEECSSSCCEEECC
T ss_pred CeeCCcccchhCCH
Confidence 45666666666543
No 387
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=10 Score=25.12 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=36.6
Q ss_pred CCCCCCchhhhhh--cCCC-CCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHH
Q 024742 177 KEDPLSQESFRKL--ASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEM 235 (263)
Q Consensus 177 ~~cp~c~~~~~~l--~~~l-P~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~ 235 (263)
..|+.|...+.++ +.-+ .....+|.. |.|...+..+++ .++....|.+|++.+..++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVG--KGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSS--SCEEEETTEEEETTTTCCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCC--CceEeECCEEECHHHhhhh
Confidence 4577787765531 0101 112456655 999999999873 4577789999998776443
No 388
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=26.00 E-value=1.7e+02 Score=20.38 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=26.4
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCceeee---chHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQ---LRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~---L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
+..|+++.|++++++--..-.+. ...... .+...=.-....|+..+|+++-++-+.
T Consensus 53 ~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 53 FEEKKFAECVQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34688888888776542211111 111100 011111112345777888877776543
No 389
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.87 E-value=46 Score=21.17 Aligned_cols=57 Identities=7% Similarity=0.160 Sum_probs=37.4
Q ss_pred CCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 177 KEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 177 ~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
..|+.|...+..-.+. .....+|.. |.|...+..+++. ++....|.+|++....++.
T Consensus 6 ~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVT-YREQPWHKECFVCTACRKQLSGQ--RFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp CBCSSSCCBCCSSEEE-SSSSEEETTTSBCSSSCCBCTTS--CCEESSSSEECHHHHHHHT
T ss_pred CCCcccCCeeccceEE-ECccccCCCCCccCCCCCcCCcC--ceEeeCCeEECHHHHHHHh
Confidence 4577776654321111 123455554 8999999998643 5667899999999998764
No 390
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.74 E-value=26 Score=24.04 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=11.7
Q ss_pred CCceecCCCCcccC
Q 024742 240 NGKITCPRTGLVCN 253 (263)
Q Consensus 240 ~~~~~CP~c~~~~~ 253 (263)
...++|++|++.|.
T Consensus 22 ~~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 22 RGEAVCPTCNVVTR 35 (98)
T ss_dssp TSCCCCTTTCCCCS
T ss_pred CCCcCCCCCCCChh
Confidence 45689999999997
No 391
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=25.65 E-value=1.6e+02 Score=23.37 Aligned_cols=92 Identities=12% Similarity=-0.030 Sum_probs=49.1
Q ss_pred cccccHHHHHHHHHHc-CCCCCCCHHHH-HHHH-HHHHHHhcCChHHHHHHHHhhchhhhhCCC-ceeeechHHHHHHHH
Q 024742 2 LRMSYYETAEKLAESS-NIQDLVDIEVF-QEAK-KVIDALQNKEVAPALAWCSDNKSRLKKSKS-KFEFQLRLQEFIELV 77 (263)
Q Consensus 2 lr~Gy~~ta~~f~~e~-~i~~~~d~~~~-~~~~-~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s-~LeF~L~~q~fIeLi 77 (263)
++.|.++.|..+.+++ .+ ...+.... .-.. ...-....|+++.|++++++.-....+.+. ......+...-.-..
T Consensus 16 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3467777766665554 22 22233221 1122 223344589999999998876544333222 111222222233445
Q ss_pred hcCChHHHHHHHHHhCc
Q 024742 78 RGENNLRAITYARKYLA 94 (263)
Q Consensus 78 ~~~~~~eAi~yar~~l~ 94 (263)
..|+..+|+.+.++-+.
T Consensus 95 ~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 67889999988876543
No 392
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.65 E-value=57 Score=22.98 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=22.5
Q ss_pred cCCCceecHHH-HHHHHH--h----CCCceecCCCCcccCccc
Q 024742 221 LPNGYVYSTKA-LEEMAK--K----NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 221 l~cGhv~~~~~-~~~~~~--~----~~~~~~CP~c~~~~~~~~ 256 (263)
--||-.|...+ |.+-.+ . +...++|+.|++.|....
T Consensus 22 ~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~ 64 (102)
T 2ghf_A 22 KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64 (102)
T ss_dssp SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTH
T ss_pred CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHH
Confidence 45888876544 433322 1 134589999999987654
No 393
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=25.46 E-value=1.6e+02 Score=22.45 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=48.0
Q ss_pred ccccHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCcee--eechHHHHHHHHhc
Q 024742 3 RMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFE--FQLRLQEFIELVRG 79 (263)
Q Consensus 3 r~Gy~~ta~~f~~e~-~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~Le--F~L~~q~fIeLi~~ 79 (263)
+.|.++.|..+.+++ .+. .+.+.+..+ ..-....|+++.|++++++.-....+...+.. ...+...-.-+...
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLNNR--AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHHHH--HHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 456666655554443 222 333333222 23345689999999998876444333211111 22233333344567
Q ss_pred CChHHHHHHHHHhCc
Q 024742 80 ENNLRAITYARKYLA 94 (263)
Q Consensus 80 ~~~~eAi~yar~~l~ 94 (263)
|+..+|+++.++-+.
T Consensus 93 ~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLT 107 (258)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 899999998887654
No 394
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=24.90 E-value=1.9e+02 Score=20.47 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChH
Q 024742 4 MSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNL 83 (263)
Q Consensus 4 ~Gy~~ta~~f~~e~~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~ 83 (263)
.|.++.|....++.--....+...+..+ ..-....|+.+.|++++++.-..- . ... ......-.-+...|+..
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~--~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHL--GIAYVKTGAVDRGTELLERSLADA-P--DNV--KVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHC-T--TCH--HHHHHHHHHHHHHTCHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcC-C--CCH--HHHHHHHHHHHHhcCHH
Confidence 4555555555544422222233333222 223345788888888876653321 1 111 11122222334557788
Q ss_pred HHHHHHHHhC
Q 024742 84 RAITYARKYL 93 (263)
Q Consensus 84 eAi~yar~~l 93 (263)
+|+++.++-+
T Consensus 94 ~A~~~~~~~~ 103 (186)
T 3as5_A 94 LAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777543
No 395
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.68 E-value=34 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=11.7
Q ss_pred eecCCCCcccCccc
Q 024742 243 ITCPRTGLVCNYSD 256 (263)
Q Consensus 243 ~~CP~c~~~~~~~~ 256 (263)
++|+.|++.|....
T Consensus 63 ~~C~~C~k~f~~~~ 76 (95)
T 2ej4_A 63 EECPREGKSFKAKY 76 (95)
T ss_dssp TTCSSTTCCCSSHH
T ss_pred cCCCCCCcccCCHH
Confidence 79999999997643
No 396
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=24.67 E-value=2.1e+02 Score=20.93 Aligned_cols=90 Identities=12% Similarity=-0.158 Sum_probs=46.3
Q ss_pred CcccccHHHHHH---HHHHcCCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCce-eeechHHHHHHH
Q 024742 1 MLRMSYYETAEK---LAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKF-EFQLRLQEFIEL 76 (263)
Q Consensus 1 Llr~Gy~~ta~~---f~~e~~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~L-eF~L~~q~fIeL 76 (263)
++..|.++.|.. +... ........... .-.-....|+++.|++++++--....+.+..- .-......=.-.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA---HPATASGARFM--LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp -----CHHHHHHHHHHHHT---STTTHHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC---ChHHHHHHHHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 356788888888 4422 11112222222 22234458999999999988766555443211 111111111233
Q ss_pred HhcCChHHHHHHHHHhCcc
Q 024742 77 VRGENNLRAITYARKYLAP 95 (263)
Q Consensus 77 i~~~~~~eAi~yar~~l~~ 95 (263)
...|+..+|+.+.++-+.-
T Consensus 77 ~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4568888898888865543
No 397
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=24.61 E-value=77 Score=21.93 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhchhhhh
Q 024742 31 AKKVIDALQNKEVAPALAWCSDNKSRLKK 59 (263)
Q Consensus 31 ~~~I~~~i~~gdi~~Al~w~~~~~~~L~~ 59 (263)
..++..+|..||.+.|.+.+..-.+.|++
T Consensus 30 iKk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 30 IKKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45677888889999999888888777765
No 398
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=24.48 E-value=40 Score=22.88 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=23.1
Q ss_pred cCCeeeeccccc------cc--CCCCCCeecCCCceecHHHHHH
Q 024742 199 HHSKLVCYITKE------LM--DTENPPQVLPNGYVYSTKALEE 234 (263)
Q Consensus 199 ~~s~~~Cpi~~~------~~--~~~n~p~~l~cGhv~~~~~~~~ 234 (263)
.+..|+|||+.. .+ +....|--+.||-.-+++-+.+
T Consensus 14 ~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 14 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKS 57 (76)
T ss_dssp -CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGG
T ss_pred cccceECccccccCcCccccCCCCCCCCcccccCccCCHHHHHH
Confidence 456788888871 11 1133466788998888877766
No 399
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=24.44 E-value=1e+02 Score=26.27 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=31.1
Q ss_pred HHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhC
Q 024742 36 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYL 93 (263)
Q Consensus 36 ~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l 93 (263)
-....|+++.|++++++.-.. ...+......++...-.-+.+.|+..+|+++.++-+
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344578888888887765331 111111112222232334456688888888887644
No 400
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.30 E-value=39 Score=20.45 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=9.5
Q ss_pred CceecCCCCcccCcccc
Q 024742 241 GKITCPRTGLVCNYSDL 257 (263)
Q Consensus 241 ~~~~CP~c~~~~~~~~~ 257 (263)
+..+|+.||.++..+.+
T Consensus 23 gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 23 GEIVCAKCGYVIEENII 39 (50)
T ss_dssp TEEEESSSCCBCCCCCC
T ss_pred CeEECcccCCccccccc
Confidence 34566666666554443
No 401
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=24.13 E-value=1.6e+02 Score=19.37 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=45.4
Q ss_pred ccccHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCC
Q 024742 3 RMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGEN 81 (263)
Q Consensus 3 r~Gy~~ta~~f~~e~-~i~~~~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~ 81 (263)
+.|.++.|..+.++. .. ...+...+..+ ..-....|+++.|++++++....- . ... ......-.-+.+.|+
T Consensus 13 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~~~~~~~-~--~~~--~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALEL-DPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALELD-P--RSA--EAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHC-T--TCH--HHHHHHHHHHHTTTC
T ss_pred HcCcHHHHHHHHHHHHHc-CCcchhHHHHH--HHHHHHhcCHHHHHHHHHHHHHHC-C--Cch--HHHHHHHHHHHHhcC
Confidence 456677776665553 22 12233333222 233445799999999987753321 1 111 111111223456788
Q ss_pred hHHHHHHHHHhCc
Q 024742 82 NLRAITYARKYLA 94 (263)
Q Consensus 82 ~~eAi~yar~~l~ 94 (263)
..+|+++.++-+.
T Consensus 85 ~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 85 YDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998886544
No 402
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=24.11 E-value=50 Score=28.10 Aligned_cols=15 Identities=27% Similarity=0.073 Sum_probs=9.1
Q ss_pred ccccHHHHHHHHHHc
Q 024742 3 RMSYYETAEKLAESS 17 (263)
Q Consensus 3 r~Gy~~ta~~f~~e~ 17 (263)
+.|..+.|..+.++.
T Consensus 24 ~~~~~~~A~~l~~~i 38 (383)
T 3ulq_A 24 RRFSIPDAEYLRREI 38 (383)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHH
Confidence 455666666666664
No 403
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=23.92 E-value=1.7e+02 Score=26.01 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=8.1
Q ss_pred cccHHHHHHHHHHH
Q 024742 128 PKQWDFLVDQFKQE 141 (263)
Q Consensus 128 ~~r~~~la~~f~~~ 141 (263)
..+|++..+.|.+.
T Consensus 563 ~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 563 KKIPGLAITHLHES 576 (597)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 34666666666554
No 404
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.73 E-value=25 Score=28.31 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=24.6
Q ss_pred CCCCCCcCCeeeecccccccCCCCCCeecCCCceecHHHH
Q 024742 193 LPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKAL 232 (263)
Q Consensus 193 lP~~~~~~s~~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~ 232 (263)
+|...++ .+.+|+.+||..-+. |..+|+.|.
T Consensus 155 ~p~~~~~-~~~~C~~CGE~~~~~--------g~~~C~~C~ 185 (191)
T 3d00_A 155 LEKKHKG-KIVLCPQCREAYPAQ--------DGELCLSCQ 185 (191)
T ss_dssp GCCCCCC-CEEECTTTCCEEEGG--------GCSSCHHHH
T ss_pred CCCcCCc-CCEECCcCCCChhhC--------CCcCCcccc
Confidence 7876664 778899999988764 788888775
No 405
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=23.55 E-value=1.8e+02 Score=19.77 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHh
Q 024742 40 NKEVAPALAWCSD 52 (263)
Q Consensus 40 ~gdi~~Al~w~~~ 52 (263)
.|+++.|++++++
T Consensus 56 ~~~~~~A~~~~~~ 68 (137)
T 3q49_B 56 MQQPEQALADCRR 68 (137)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 4555555555443
No 406
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=23.31 E-value=56 Score=27.79 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=9.7
Q ss_pred HHHhcCChHHHHHHHHHh
Q 024742 75 ELVRGENNLRAITYARKY 92 (263)
Q Consensus 75 eLi~~~~~~eAi~yar~~ 92 (263)
-....|+..+|+.+.++-
T Consensus 110 ~~~~~g~~~~A~~~~~~a 127 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREA 127 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHH
Confidence 334455666666655543
No 407
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.67 E-value=82 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhch
Q 024742 27 VFQEAKKVIDALQNKEVAPALAWCSDNKS 55 (263)
Q Consensus 27 ~~~~~~~I~~~i~~gdi~~Al~w~~~~~~ 55 (263)
...+-..|.++|++||.+.|-+.+.+|-.
T Consensus 174 ~~~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 202 (218)
T 3sxy_A 174 SNREHKELIERIISGDKEGAIEKLKEHLK 202 (218)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556667777777777777777666643
No 408
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=22.49 E-value=1.1e+02 Score=26.24 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=32.8
Q ss_pred cCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHH
Q 024742 40 NKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARK 91 (263)
Q Consensus 40 ~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~ 91 (263)
.||++.|++|+.+. +....+.-...++....--+++.|+...|.+..++
T Consensus 113 ~g~~eeAL~~l~~~---i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 113 LGDLDKSLETCVEG---IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HTCHHHHHHHHHHH---HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 69999999999876 22221122333444444456678999999998875
No 409
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=22.49 E-value=58 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhch
Q 024742 30 EAKKVIDALQNKEVAPALAWCSDNKS 55 (263)
Q Consensus 30 ~~~~I~~~i~~gdi~~Al~w~~~~~~ 55 (263)
-.+.|-..||.|++++|++||++...
T Consensus 180 l~~~i~~liR~G~~~eA~~lc~~~gq 205 (460)
T 3iko_C 180 FFKYIYELILAGAIDEALEEAKLSDN 205 (460)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 35678999999999999999988744
No 410
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=22.38 E-value=83 Score=25.07 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCcc
Q 024742 71 QEFIELVRGENNLRAITYARKYLAP 95 (263)
Q Consensus 71 q~fIeLi~~~~~~eAi~yar~~l~~ 95 (263)
+..++.|+.||...|.+..++|+..
T Consensus 187 ~~I~~Ai~~~d~~~A~~~~~~Hl~~ 211 (222)
T 3ihu_A 187 RRIATAVLAGEPDAAEAAGAAHVKN 211 (222)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555666666665555555543
No 411
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=21.80 E-value=2.6e+02 Score=21.09 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=25.0
Q ss_pred HhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhC
Q 024742 38 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYL 93 (263)
Q Consensus 38 i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l 93 (263)
...|+++.|++++++.-..-. .+. ..+...-.-+.+.|+..+|+.+.++-+
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAP---EDA--RGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT---TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc---ccH--HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 346777777777655422211 111 122222223345567777777666544
No 412
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.73 E-value=36 Score=23.58 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.6
Q ss_pred CCceecCCCCcc
Q 024742 240 NGKITCPRTGLV 251 (263)
Q Consensus 240 ~~~~~CP~c~~~ 251 (263)
+...+||.|++.
T Consensus 33 ~~ky~CpfCGk~ 44 (83)
T 3j21_i 33 RQKHTCPVCGRK 44 (83)
T ss_dssp HSCBCCSSSCSS
T ss_pred hcccCCCCCCCc
Confidence 456899999976
No 413
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=21.62 E-value=2.5e+02 Score=20.79 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=7.7
Q ss_pred hcCChHHHHHHHHh
Q 024742 39 QNKEVAPALAWCSD 52 (263)
Q Consensus 39 ~~gdi~~Al~w~~~ 52 (263)
..|+++.|++++++
T Consensus 49 ~~g~~~~A~~~~~~ 62 (213)
T 1hh8_A 49 ILKNMTEAEKAFTR 62 (213)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 35556665555544
No 414
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=21.50 E-value=89 Score=28.01 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHhhchhhhhC
Q 024742 23 VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKS 60 (263)
Q Consensus 23 ~d~~~~~~~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~ 60 (263)
-++.....+.++.+++..||++.|-..+.+....|.+.
T Consensus 169 y~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv 206 (412)
T 2ra1_A 169 YDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKV 206 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhh
Confidence 46678888999999999999999888887777776654
No 415
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=21.38 E-value=1.3e+02 Score=24.28 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=26.8
Q ss_pred HHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 37 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 37 ~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
.+..|+++.|++++++.-..- ..+......+....-.-+...|+..+|+++.++-+.
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677777777765543221 111111111112222233456677777777765443
No 416
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.16 E-value=40 Score=26.46 Aligned_cols=7 Identities=43% Similarity=0.956 Sum_probs=5.2
Q ss_pred ecCCCCc
Q 024742 244 TCPRTGL 250 (263)
Q Consensus 244 ~CP~c~~ 250 (263)
+||.|+.
T Consensus 155 ~CP~Cg~ 161 (170)
T 3pwf_A 155 YCPVCGA 161 (170)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 7888874
No 417
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.10 E-value=83 Score=21.20 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCcCCe-eeecccccccCCCCCCeecCCCceecHHHHHHHH
Q 024742 176 TKEDPLSQESFRKLASPLPYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEEMA 236 (263)
Q Consensus 176 ~~~cp~c~~~~~~l~~~lP~~~~~~s~-~~Cpi~~~~~~~~n~p~~l~cGhv~~~~~~~~~~ 236 (263)
...|+.|...+..-.+ ......+|.. |.|...+..+.+. .+....|.+|++.+..++.
T Consensus 25 ~~~C~~C~~~I~~~~v-~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYI--GFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp CCBBSSSCCBCCSCEE-EETTEEECTTTCBCSSSCCBCSSS--CBEESSSCEECHHHHHHHT
T ss_pred CCCCccCCCEecceEE-EECCccccccCCccCCCCCCCCCC--EeEeECCEEECHHHHHHHc
Confidence 3558888775531111 1123456655 9999999999754 4677899999999998875
No 418
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=20.97 E-value=2.5e+02 Score=20.47 Aligned_cols=58 Identities=9% Similarity=-0.143 Sum_probs=36.4
Q ss_pred HHhcCChHHHHHHHHhhchhhhhCCCc--eeeechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 37 ALQNKEVAPALAWCSDNKSRLKKSKSK--FEFQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 37 ~i~~gdi~~Al~w~~~~~~~L~~~~s~--LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
....|+++.|++++++--....+.+.+ ........-=.-....|+..+|+.+.++-+.
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345899999999998876666554422 1111122222234456899999999887554
No 419
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=20.92 E-value=1.1e+02 Score=23.14 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=6.6
Q ss_pred eecCC---CCcccCc
Q 024742 243 ITCPR---TGLVCNY 254 (263)
Q Consensus 243 ~~CP~---c~~~~~~ 254 (263)
++|+. |++.|..
T Consensus 162 ~~C~~~~~C~~~f~~ 176 (190)
T 1tf6_A 162 YPCKKDDSCSFVGKT 176 (190)
T ss_dssp CCCCSTTTCCCCCSC
T ss_pred CcCCCCCcCCCcccc
Confidence 55555 5555543
No 420
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=20.80 E-value=1.1e+02 Score=22.12 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhchhhhhC
Q 024742 31 AKKVIDALQNKEVAPALAWCSDNKSRLKKS 60 (263)
Q Consensus 31 ~~~I~~~i~~gdi~~Al~w~~~~~~~L~~~ 60 (263)
..+++.+|..||.+.|.+.+..-.+.|++.
T Consensus 37 iKkv~~Ai~~gdk~~A~~~l~~a~s~iDka 66 (106)
T 2vqe_T 37 SKKAVQLAQEGKAEEALKIMRKAESLIDKA 66 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 446778888899999988888888887763
No 421
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=20.42 E-value=6.8 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=16.5
Q ss_pred CCceecHHHHHHHHHh--CCCceecCCCCcccCccc
Q 024742 223 NGYVYSTKALEEMAKK--NNGKITCPRTGLVCNYSD 256 (263)
Q Consensus 223 cGhv~~~~~~~~~~~~--~~~~~~CP~c~~~~~~~~ 256 (263)
||..+.+..+..-... ....+.|++|+..+...+
T Consensus 23 C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~ 58 (76)
T 2yuc_A 23 CPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEA 58 (76)
T ss_dssp CSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHH
T ss_pred ccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHHH
Confidence 5555555444433221 123456666666665444
No 422
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=20.35 E-value=1.1e+02 Score=24.74 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHHHhCc
Q 024742 73 FIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 73 fIeLi~~~~~~eAi~yar~~l~ 94 (263)
.++.|+.||...|.+..++|+.
T Consensus 199 I~~Ai~~~D~~~A~~~m~~Hl~ 220 (239)
T 2di3_A 199 ILAALRAGESTVAATLIKEHIE 220 (239)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 423
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=20.30 E-value=1.8e+02 Score=18.71 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=33.5
Q ss_pred HHHhcCChHHHHHHHHhhchhhhhCCCceeeechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 36 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 36 ~~i~~gdi~~Al~w~~~~~~~L~~~~s~LeF~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
.....|+++.|++++++.-.. ... + ...+...=.-+.+.|+..+|+++.++-+.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~-~p~--~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITA-QPQ--N--PVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-CTT--C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCC--C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345689999999998765322 111 1 12222333345567899999998887544
No 424
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=20.25 E-value=49 Score=16.98 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCcchh
Q 024742 82 NLRAITYARKYLAPWG 97 (263)
Q Consensus 82 ~~eAi~yar~~l~~~~ 97 (263)
+..||+|.+.+..-|.
T Consensus 2 isqaikylqnnikgfi 17 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFI 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEE
Confidence 5689999998776654
No 425
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=20.24 E-value=94 Score=24.90 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=14.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCc
Q 024742 72 EFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 72 ~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
..++.|+.||...|.+..++|+.
T Consensus 195 ~I~~Ai~~~D~~~A~~~m~~Hl~ 217 (239)
T 1hw1_A 195 KLSALCSEGAHDQVYETVRRYGH 217 (239)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566666666666666666664
No 426
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.22 E-value=41 Score=21.73 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=7.0
Q ss_pred ceecCCCCcccCc
Q 024742 242 KITCPRTGLVCNY 254 (263)
Q Consensus 242 ~~~CP~c~~~~~~ 254 (263)
.++|++|++.|..
T Consensus 15 ~~~C~~C~~~f~~ 27 (86)
T 1x6h_A 15 PYACSHCDKTFRQ 27 (86)
T ss_dssp CEECSSSSCEESS
T ss_pred CCcCCCCCCccCC
Confidence 3555555555543
No 427
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.02 E-value=1.8e+02 Score=19.92 Aligned_cols=58 Identities=19% Similarity=0.029 Sum_probs=33.3
Q ss_pred HHhcCChHHHHHHHHhhchhhhhCCCce-eeechHHHHHHHHhcCChHHHHHHHHHhCc
Q 024742 37 ALQNKEVAPALAWCSDNKSRLKKSKSKF-EFQLRLQEFIELVRGENNLRAITYARKYLA 94 (263)
Q Consensus 37 ~i~~gdi~~Al~w~~~~~~~L~~~~s~L-eF~L~~q~fIeLi~~~~~~eAi~yar~~l~ 94 (263)
....|+.+.|++++++--....+.+... ........=.-....|+..+|+++.++-+.
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3457999999999887655554432211 111111111223456888888888876544
Done!