BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024744
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2
SV=2
Length = 394
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 161/278 (57%), Gaps = 39/278 (14%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI 61
E+ ED P V I ET H+ + + + + VT++TG+LGAGK+TL+NYIL +H ++I
Sbjct: 12 EEYAEDCPELVPI-ETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKI 70
Query: 62 AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERL 121
AVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K +
Sbjct: 71 AVILNEFGEGSAVEKSLAV-SQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKF 129
Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT----------------------- 158
D+ILLETTGLA+P +AS+ W+D +L S + LD IIT
Sbjct: 130 DYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEA 189
Query: 159 -------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 211
D++++NK DLVS E L++L I IN L V+ + R + LS +L+
Sbjct: 190 TRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLH 245
Query: 212 AYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 249
AYD L+ L Q+ S+ D ++ T++ P
Sbjct: 246 AYDTLSGISLQKKL---QHVSTAPHLDQSIVTVTFDVP 280
>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1
Length = 393
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 145/245 (59%), Gaps = 41/245 (16%)
Query: 2 EDEEEDPPLAVRIDETTHEFSNSHENDDV--SVGVTVITGFLGAGKSTLVNYILNGKHGK 59
E+ ED P V I+ E EN D + VT++TG+LGAGK+TL+NYIL +H +
Sbjct: 12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67
Query: 60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
+IAVILNEFGE VE+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K
Sbjct: 68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126
Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT--------------------- 158
+ D+ILLETTGLA+P +AS+ W+D +L S + LD IIT
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186
Query: 159 ---------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 209
D++++NK DLVS E L+ L I IN L V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242
Query: 210 CRAYD 214
AYD
Sbjct: 243 LHAYD 247
>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1
Length = 395
Score = 177 bits (449), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 151/264 (57%), Gaps = 37/264 (14%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
+AS+ W+D +L S + LD IIT D +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINK 204
Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+ L+ L
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260
Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
+ +Q D ++ T++ P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282
>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1
Length = 395
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 151/264 (57%), Gaps = 37/264 (14%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNEFGE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
+AS+ W+D +L S + LD IIT D +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINK 204
Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+ L+ L
Sbjct: 205 TDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260
Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
+ +Q D ++ T++ P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282
>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1
Length = 395
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 150/264 (56%), Gaps = 37/264 (14%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
+AS+ W+D +L S + LD IIT D++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+ L+ L
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260
Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
+ +Q D ++ T++ P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282
>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1
Length = 411
Score = 170 bits (431), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 139/217 (64%), Gaps = 30/217 (13%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
V VT++TGFLGAGK++L+ IL ++GKR+AV++NE G+ +ER+++ + G L EEW
Sbjct: 61 VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAV 151
V L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA WLDD L+S V
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDV 180
Query: 152 RLDSIIT-------------------------DVVILNKVDLVSPERSGDSLDELEKEIH 186
+LD I+T D +ILNK DL+S E +L + + I
Sbjct: 181 KLDGIVTVIDCKNIDNILKDESDIGFIQISHADCLILNKTDLISSE----ALSVVRQTIL 236
Query: 187 EINSLAHVIRSVRCQV-DLSEVLNCRAYDATHVTRLE 222
+IN LA +I + ++ D+SE+L+ AY + + LE
Sbjct: 237 KINCLAKIIETTYGRLDDISEILDLDAYGNENTSNLE 273
>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1
Length = 395
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 37/264 (14%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
+AS+ W+D +L S + LD IIT D++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
DLV PE + + +L + IN L ++ + R +VDLS VL+ A+D+ L+ L
Sbjct: 205 TDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260
Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
+ +Q D ++ T++ P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFDVP 282
>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1
Length = 395
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 136/230 (59%), Gaps = 35/230 (15%)
Query: 16 ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
ETT + VT+ITG+LGAGK+TL+NYIL +H KR+AVILNE GE +E
Sbjct: 26 ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85
Query: 76 RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
+++ +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P
Sbjct: 86 KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144
Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
+ S+ W+D +L S + LD IIT D++++NK
Sbjct: 145 AVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204
Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 215
DLV PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250
>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1
Length = 429
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 47/249 (18%)
Query: 13 RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72
+++ T+ ++ HE + V ++ITG+LG+GKSTL+ I K+IAVILNEFG+
Sbjct: 54 QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSS 111
Query: 73 GVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGL 131
+E+AM + G +EW++L NGC+CC++K+ V+A+E +V+R ++D+ILLET+G+
Sbjct: 112 EIEKAMTIK-NGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGI 170
Query: 132 ANPAPLASVLWLDDQLESAVRLDSIIT--------------------------------- 158
A+PAP+A + W D+ L S+V +D IIT
Sbjct: 171 ADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTI 230
Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
D +I+NK D + E S + + +L++ + EINS+A + + + +L+
Sbjct: 231 AHFQLAMADRIIMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDI 288
Query: 211 RAYDATHVT 219
AYD+ ++
Sbjct: 289 HAYDSVRIS 297
>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium
discoideum GN=DDB_G0274527 PE=3 SV=1
Length = 475
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 62/250 (24%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-------- 85
V+V++GFLG+GK+TL+NYILN HG +IAVI+N+ E+ ++ +I E E
Sbjct: 45 VSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMS-EVNIDSKLILENEFKITRTKATE 103
Query: 86 ALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD- 144
VE VE++NGCICCT++ L+ + +L + K R D++++E++G++ P P+A +
Sbjct: 104 KQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEI 162
Query: 145 ----DQLESAVRLDSIIT------------------------------------------ 158
+ L+ +LD+++T
Sbjct: 163 DGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEF 222
Query: 159 -DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 217
+V++LNK DLVS ER + +E I IN A ++RS V L E+LN +D
Sbjct: 223 SNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFDFKK 278
Query: 218 VTRLEGLLEE 227
+ G L+E
Sbjct: 279 ASEHPGWLKE 288
>sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1
Length = 375
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 8/132 (6%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW-- 91
VT++TGFLGAGK+TL+ ++L+ G+RIAVI+NEFGE +G++ ++ + G EE
Sbjct: 34 VTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGE-LGIDGEILKQCSIGCSEEEAQG 92
Query: 92 --VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLE 148
ELANGC+CCTV+ + +LV R+ LD IL+ET+GLA P PL W ++
Sbjct: 93 RVFELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAFQW--PEIR 150
Query: 149 SAVRLDSIITDV 160
+A +D++IT V
Sbjct: 151 NACTVDAVITVV 162
>sp|P94400|YCIC_BACSU Putative metal chaperone YciC OS=Bacillus subtilis (strain 168)
GN=yciC PE=2 SV=1
Length = 397
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 129/247 (52%), Gaps = 57/247 (23%)
Query: 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG--ALV 88
+ VTV++G+LGAGK+TL+N IL + G +IAVI+N+ E+ ++ ++ + EGG
Sbjct: 3 KIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMS-EVNIDAGLVKQ-EGGLSRTD 60
Query: 89 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 146
E+ VE++NGCICCT++ L+ +E+L + R D+I++E+TG++ P P+A ++D++
Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLA-KDGRFDYIVIESTGISEPIPVAQTFSYIDEEM 119
Query: 147 ---LESAVRLDSIIT-------------------------------------------DV 160
L +LD+++T DV
Sbjct: 120 GIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIEFCDV 179
Query: 161 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 220
+ILNK DLVS + L++LE + ++ A IRSV+ V E+L+ ++ +
Sbjct: 180 LILNKCDLVSEQ----ELEQLENVLRKLQPRARFIRSVKGNVKPQEILHTGLFNFEEASG 235
Query: 221 LEGLLEE 227
G ++E
Sbjct: 236 SAGWIQE 242
>sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3
Length = 354
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
Query: 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEE 90
+ TVITGFLGAGK+T++ +L GKRI +I+NEFG+ +GV+ ++ A E+
Sbjct: 10 KIPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGD-LGVDGDVLKGCGAEACTED 68
Query: 91 -WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLD 144
+EL NGCICCTV + + +L++R+ R DHI++ET+GLA P PL A+ W D
Sbjct: 69 DIIELTNGCICCTVADDFIPTMTKLLERENRPDHIIIETSGLALPQPLIAAFNWPD 124
>sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
Length = 419
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 89/136 (65%), Gaps = 15/136 (11%)
Query: 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE----EIGVERAM-INEGEGGALV 88
VTV++GFLGAGK+TL+N IL + G R+AVI+N+ E V+R + ++ G
Sbjct: 12 VTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGR----- 66
Query: 89 EEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQ- 146
+E +E++NGCICCT++ L++ + L R++R D++L+E+TG++ P P+A +LD +
Sbjct: 67 DELIEMSNGCICCTLRADLLEQISDLA-RQQRFDYLLIESTGISEPMPVAETFAFLDTEG 125
Query: 147 --LESAVRLDSIITDV 160
L RLD+++T V
Sbjct: 126 FSLSELARLDTLVTVV 141
>sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA OS=Escherichia coli
(strain K12) GN=yjiA PE=1 SV=3
Length = 318
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 40/229 (17%)
Query: 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
+ VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+ +I G +
Sbjct: 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57
Query: 92 VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
L NGCICC+ + L AL L+ ++ D +++E TG+A+P P+ + + L
Sbjct: 58 KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSII-------------------TDVVILNKVDLVSPERSGDSLDELEKEIHEI 188
LD +I + V +++ L + +G++ ++L + + I
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEA-EKLHERLARI 176
Query: 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 237
N+ A V +DL + N + +LEE+ + H
Sbjct: 177 NARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215
>sp|P33030|YEIR_ECOLI Uncharacterized protein YeiR OS=Escherichia coli (strain K12)
GN=yeiR PE=3 SV=2
Length = 328
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 52/240 (21%)
Query: 36 VITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL 94
+ITGFLG+GK+T + ++L K ++ AV++NEFG E+G++ A++ + GAL++ E+
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFG-EVGIDGALL--ADSGALLK---EI 59
Query: 95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-------WLDDQ- 146
GC+CC + L L+ R+ + D +L+E TGL +P + +L W+D +
Sbjct: 60 PGGCMCCVNGLPMQVGLNTLL-RQGKPDRLLIEPTGLGHPKQILDLLTAPVYEPWIDLRA 118
Query: 147 ----LESAVRLDS------------IITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190
L+ + LD D+++ NK D +PE S L++ +
Sbjct: 119 TLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPE----SEQALQRWWQQNGG 174
Query: 191 LAHVIRSVRCQVD----------LSEVLNCRAYDATHVTRLEGL----LEEHQ-YKSSQN 235
+I S +VD L+E+ A+ HV + +GL L EHQ ++ S N
Sbjct: 175 DRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVK-KGLAALSLPEHQRWRRSLN 233
>sp|P22042|YTR2_SPIAU Uncharacterized protein in trpE 3'region (Fragment)
OS=Spirochaeta aurantia PE=4 SV=1
Length = 60
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70
S VTV+TGFLG+GK+TLVN +L + G R +++NEFGE
Sbjct: 7 STPVTVLTGFLGSGKTTLVNRLLKERPGTRFGLVVNEFGE 46
>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7
PE=5 SV=3
Length = 247
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 34/106 (32%)
Query: 140 VLWLDDQLESAVRLDSIIT------------------------------DVVILNKVDLV 169
+ W+D +L S + LD IIT D++++NK DLV
Sbjct: 1 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
Query: 170 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 215
PE + + +L I IN L ++ + R +VDLS VL+ A+D+
Sbjct: 61 -PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 102
>sp|Q2JB14|PHNC_FRASC Phosphonates import ATP-binding protein PhnC OS=Frankia sp.
(strain CcI3) GN=phnC PE=3 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 11 AVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYI--LNGKHGKRIAV 63
AVR + T F + D+VS V V+ G G+GKSTL+ ++ L+G R+
Sbjct: 3 AVRFEGVTKRFGQTLALDEVSFTVEPGEVVVLLGLSGSGKSTLLRHVDGLHGASAGRVIA 62
Query: 64 ILNEFGEEIG 73
+ + G+ G
Sbjct: 63 LGTDVGQARG 72
>sp|B2THS4|RSGA_CLOBB Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=rsgA PE=3 SV=1
Length = 290
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 4 EEEDPPLAVRIDETTHE--FSNSHE-------NDDVSVGVTVITGFLGAGKSTLVNYILN 54
EEE + RI++ +E + N+ E + ++ +TV+ G GAGKSTL+N + N
Sbjct: 117 EEERENVKKRINDIGYEVLYINAKEGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTN 176
Query: 55 GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114
+H +L G+ I G+ E +E++NG I T S ++ E
Sbjct: 177 KEH------MLT------GIVSEKIGRGKHTTRHSELIEVSNGYIVDTPGFSTLEIKE-- 222
Query: 115 VQRKERLDHILLE 127
+ KE L + E
Sbjct: 223 LMNKEDLKYCFPE 235
>sp|Q9E6R1|HELI_GAHVM Probable ATP-dependent helicase UL5 homolog OS=Gallid herpesvirus
2 (strain Chicken/Md5/ATCC VR-987) GN=MDV017 PE=3 SV=1
Length = 858
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 4 EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLV 49
+E PPL+ I+ + HE E D+ V +I+G G+GKST +
Sbjct: 40 DELIPPLSYFIEASNHENPVELEARDLPFAVYLISGNAGSGKSTCI 85
>sp|Q9UT95|YL44_SCHPO Uncharacterized ABC transporter ATP-binding protein C323.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC323.04 PE=3 SV=1
Length = 487
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG 73
+TG G+GK+TL+ Y++ G H K A + FG+ IG
Sbjct: 294 ALTGSNGSGKTTLLAYVV-GDHPKLFASNIKFFGKSIG 330
>sp|Q0I447|RSGA_HAES1 Putative ribosome biogenesis GTPase RsgA OS=Haemophilus somnus
(strain 129Pt) GN=rsgA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 30 VSVGVTVITGFLGAGKSTLVNYIL---NGKHGKRIAVILNEFGEEIGVERAMINEGEGGA 86
+S G ++ G G GKS+L+NYIL N + GK V + G+ + + +GG
Sbjct: 207 LSEGTSIFVGQSGVGKSSLINYILPEVNAQTGKLSQV--SGLGQHTTTSSRLYHLSQGGN 264
Query: 87 LVE 89
L++
Sbjct: 265 LID 267
>sp|Q4L2X1|DEGV1_STRGN DegV domain-containing protein OS=Streptococcus gordonii PE=4 SV=1
Length = 281
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%)
Query: 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKV 166
LVQ L QL+ D I+ E T + L VL D L RL+ +I VV L +
Sbjct: 128 LVQKLNQLISNGLSFDEIVQEITNYQSKTKLLFVLAKVDNLVKNGRLNKLIGAVVGLPNI 187
Query: 167 DLVSPERSGDSLDELEKEIHEINSLAHVIRSV 198
+V +L+ L+K SL+ +
Sbjct: 188 RMVGEAGPQGTLELLQKARGYKKSLSAAFEEI 219
>sp|Q8ETB7|RSGA1_OCEIH Putative ribosome biogenesis GTPase RsgA 1 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rsgA1 PE=3 SV=1
Length = 351
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 21 FSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMI 79
+N HE+D V V+ G GAGKSTL+N +L K K +V ++ G R +
Sbjct: 187 LANIHEDDSV-----VLIGSSGAGKSTLINALLTEKVLKTGSVREDDKRGRHTTTHRELF 241
Query: 80 NEGEGGALVE 89
N GG +++
Sbjct: 242 NLPTGGVIID 251
>sp|B0UT89|RSGA_HAES2 Putative ribosome biogenesis GTPase RsgA OS=Haemophilus somnus
(strain 2336) GN=rsgA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 30 VSVGVTVITGFLGAGKSTLVNYIL---NGKHGKRIAVILNEFGEEIGVERAMINEGEGGA 86
+S G ++ G G GKS+L+NYIL N + GK V + G+ + + +GG
Sbjct: 207 LSEGTSIFVGQSGVGKSSLINYILPEVNAQTGKLSQV--SGLGQHTTTSSRLYHLSQGGN 264
Query: 87 LVE 89
L++
Sbjct: 265 LID 267
>sp|B2V4B8|RSGA_CLOBA Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=rsgA PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 4 EEEDPPLAVRIDETTHE--FSNSHE-------NDDVSVGVTVITGFLGAGKSTLVNYILN 54
EEE + RI++ +E + N+ E + ++ +TV+ G GAGKSTL+N + +
Sbjct: 117 EEERENVKKRINDIGYEVLYINAKEGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTD 176
Query: 55 GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114
+H +L G+ I G+ E +E++NG I T S ++ +++L
Sbjct: 177 KEH------MLT------GIVSEKIGRGKHTTRHSELIEVSNGYIVDTPGFSTLE-IKEL 223
Query: 115 VQRKE 119
++++E
Sbjct: 224 MEKEE 228
>sp|Q9HNI8|PHNC_HALSA Phosphonates import ATP-binding protein PhnC OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=phnC PE=3 SV=1
Length = 280
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER---AMINEGEGGALVEEWV 92
VI G GAGKSTL+ LNG + + GE + R MI + ++EE
Sbjct: 33 VILGESGAGKSTLLR-CLNGLTEPTTGSVKID-GEPVNGPRDDVGMIFQQHN--IIEEMT 88
Query: 93 ELANGCICCTVKHSLVQALEQLVQRKERLDHI-LLETTGLANPA 135
N + SLV++L Q R+E+LD + L+T GL + A
Sbjct: 89 AYTNALSGSLNRTSLVRSLFQWNDREEKLDALRALDTVGLLDDA 132
>sp|O51777|UVRA_BORBU UvrABC system protein A OS=Borrelia burgdorferi (strain ATCC 35210
/ B31 / CIP 102532 / DSM 4680) GN=uvrA PE=3 SV=1
Length = 950
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 23 NSHENDDVSV--GV-TVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-----FGEEIGV 74
N+ +N D+S+ GV TVITG G+GKSTL+N +L R+ LNE F + +G
Sbjct: 632 NNLKNIDLSIPLGVFTVITGVSGSGKSTLLNEVLYPALDSRLK--LNEKYCDGFKDIVGY 689
Query: 75 ER 76
E+
Sbjct: 690 EK 691
>sp|A1USS5|NDVA_BARBK Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
GN=ndvA PE=3 SV=1
Length = 595
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 11 AVRIDETTHEFSNSHE-----NDDVSVGVTV-ITGFLGAGKSTLVN 50
A++ T+EF NS + + +V G TV I G GAGK+TL+N
Sbjct: 334 AIQFHHVTYEFPNSSQGVFDISFEVKAGQTVAIVGPTGAGKTTLIN 379
>sp|P70864|NDVA_BARBA Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Bartonella bacilliformis GN=ndvA PE=3 SV=2
Length = 595
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 11 AVRIDETTHEFSNSHE-----NDDVSVGVTV-ITGFLGAGKSTLVN 50
A++ T+EF NS + + +V G TV I G GAGK+TL+N
Sbjct: 334 AIQFHHVTYEFPNSSQGVFDISFEVKAGQTVAIVGPTGAGKTTLIN 379
>sp|Q9CEL9|UVRA_LACLA UvrABC system protein A OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=uvrA PE=3 SV=1
Length = 940
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 23 NSHENDDV--SVGV-TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM 78
N+ +N DV +GV T +TG G+GKSTLVN IL K +A LN E+ G + +
Sbjct: 620 NNLQNLDVEFPMGVMTAVTGVSGSGKSTLVNSILK----KSLAQKLNHNSEKPGKHKKI 674
>sp|O67615|SRP54_AQUAE Signal recognition particle protein OS=Aquifex aeolicus (strain
VF5) GN=ffh PE=3 SV=1
Length = 454
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 34/119 (28%)
Query: 26 ENDDVSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVI------------LNEFGEE 71
E D+ G + G G GK+T + I N K G ++AV L E
Sbjct: 89 EKADLKKGTVLFVGLQGTGKTTTIGKIANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAER 148
Query: 72 IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTG 130
+GV EG G VE+A + ++E +D++LL+T G
Sbjct: 149 VGVPYYEFEEGLGA------VEIARRAVKRA--------------KEESVDYLLLDTAG 187
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Bos taurus GN=CNP
PE=2 SV=2
Length = 400
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 36 VITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL 94
++ G G+GKSTL +I++ + G ++ + + I G G+ EE+ +L
Sbjct: 34 ILRGLPGSGKSTLARFIVDKYRDGTKM----------VSADSYKITPGARGSFSEEYKQL 83
Query: 95 ANGCICCTVKHSLVQALEQLVQRKERLDHIL 125
C + V L+ +ERL+ +
Sbjct: 84 DEDLAACCRRDFRVLVLDDTNHERERLEQLF 114
>sp|A0LPF9|OBG_SYNFM GTPase obg OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=obg PE=3 SV=1
Length = 348
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLES-AVRLDSIITDVVILNKVDLVSPER 173
++R L H L++ + L+ PL ++ +L S + RL V++LNKVDLV PER
Sbjct: 235 IERTRILAH-LVDISQLSPEEPLRPYRLIESELASYSARLGEK-KRVIVLNKVDLV-PER 291
Query: 174 SGDSLDELEKEIHEINSLAHVIR--SVRCQVDLSEVLNC 210
D LE + L H + S R + L E+L+
Sbjct: 292 -----DRLEALVSRYEQLGHPVFPVSARTKEGLGELLSA 325
>sp|A8Z5Z5|SECA_SULMW Protein translocase subunit SecA OS=Sulcia muelleri (strain GWSS)
GN=secA PE=3 SV=1
Length = 1018
Score = 31.2 bits (69), Expect = 8.5, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 50 NYILNGKHGKRIAVILNEFGEE--IGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107
N +LN KH K+ A I+ E G+ + + M G + +E +L I T +H
Sbjct: 663 NNVLNAKHHKKEAYIIEEAGKSGIVTIATNMAGRGTDIKISDEVKKLGGLAIIGTERHD- 721
Query: 108 VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSI--ITDVVILN 164
R+D L+ TG +P L L+D L LD I I D +
Sbjct: 722 ----------SRRIDRQLIGRTGRQGDPGSSKFYLSLEDDLMRIFGLDRISTILDKLGHK 771
Query: 165 KVDLVSPERSGDSLDELEKEIHEIN 189
K + ++ +S+ +K+I E N
Sbjct: 772 KGEYLTGGLISNSIQLAQKKIEENN 796
>sp|B8HU67|OBG_CYAP4 GTPase obg OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=obg
PE=3 SV=1
Length = 359
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN 96
I G AGKSTL++ +L+ K +GV R G+G + +A
Sbjct: 164 IIGLPNAGKSTLIS-VLSAARPKIADYPFTTLVPNLGVVRP--PNGDGVVFADIPGLIAG 220
Query: 97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSI 156
+ H ++ +E R L H++ T PL + + +LE+ S
Sbjct: 221 AHQGIGLGHDFLRHIE----RTRLLIHLIDSTA----EDPLRDYVTIQTELEAYGHGLSD 272
Query: 157 ITDVVILNKVDLVSPERSGDSLDELEKEIH 186
+V+LNK+D + PE D L+ EIH
Sbjct: 273 RPQIVVLNKIDALLPEDLTDLQARLQSEIH 302
>sp|Q8KAS1|MNME_CHLTE tRNA modification GTPase MnmE OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=mnmE PE=1 SV=1
Length = 473
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 30 VSVGV-TVITGFLGAGKSTLVNYILNGKHGKRIAVI------LNEFGEEIGV-ERAMINE 81
VS GV TVI G AGKSTL+N +L G+ A++ ++ EE + ++ M
Sbjct: 227 VSEGVSTVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIEECFIHDKTMFRL 282
Query: 82 GEGGALVEEWVELANGCICCTVKHSLVQA---LEQLVQRKERLDHILLETTGLANPAPLA 138
+ L E E+ + I + + + +A L L ERLD L E L P A
Sbjct: 283 TDTAGLREAGEEIEHEGIRRS-RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAA 341
Query: 139 SVLWLDDQLESAVRLDSIITDVVILNKVDLVS-PERSGDSLDELEKEIHEI 188
L + ++L+ A D++I + +++ +GD +D L++ + ++
Sbjct: 342 KFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,004,255
Number of Sequences: 539616
Number of extensions: 4074909
Number of successful extensions: 18753
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 18673
Number of HSP's gapped (non-prelim): 95
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)