Query 024744
Match_columns 263
No_of_seqs 222 out of 2163
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2743 Cobalamin synthesis pr 100.0 1E-40 2.2E-45 277.5 16.9 232 25-262 50-311 (391)
2 COG0523 Putative GTPases (G3E 100.0 1.6E-39 3.6E-44 282.2 20.9 218 32-262 1-246 (323)
3 PRK11537 putative GTP-binding 100.0 1.9E-36 4.2E-41 264.1 20.6 215 31-262 3-245 (318)
4 TIGR02475 CobW cobalamin biosy 100.0 9.5E-35 2.1E-39 256.0 22.0 225 30-263 2-274 (341)
5 PF02492 cobW: CobW/HypB/UreG, 100.0 5.5E-29 1.2E-33 201.1 10.7 151 33-195 1-177 (178)
6 cd03112 CobW_like The function 99.9 4E-23 8.8E-28 163.6 13.9 130 33-168 1-158 (158)
7 COG1159 Era GTPase [General fu 99.9 3.6E-23 7.7E-28 174.2 9.9 197 29-262 3-205 (298)
8 PRK10463 hydrogenase nickel in 99.9 1.4E-22 3.1E-27 172.8 11.5 179 25-227 97-286 (290)
9 TIGR00073 hypB hydrogenase acc 99.9 1.5E-21 3.2E-26 161.5 11.1 179 24-227 14-204 (207)
10 TIGR00101 ureG urease accessor 99.8 2.3E-18 5.1E-23 141.2 12.5 177 34-228 3-194 (199)
11 COG0378 HypB Ni2+-binding GTPa 99.8 2E-18 4.3E-23 137.3 10.1 175 32-227 13-198 (202)
12 COG1160 Predicted GTPases [Gen 99.8 1.2E-18 2.7E-23 154.5 8.4 161 32-229 3-164 (444)
13 COG1160 Predicted GTPases [Gen 99.7 3.7E-19 8E-24 157.8 0.6 180 33-262 179-367 (444)
14 PF02421 FeoB_N: Ferrous iron 99.7 8.2E-18 1.8E-22 131.8 7.3 155 34-225 2-156 (156)
15 PF03308 ArgK: ArgK protein; 99.7 3.2E-17 6.9E-22 136.5 7.2 184 31-230 28-230 (266)
16 COG1703 ArgK Putative periplas 99.7 1.3E-16 2.8E-21 134.5 10.6 185 32-230 51-254 (323)
17 PRK00089 era GTPase Era; Revie 99.7 9.8E-17 2.1E-21 139.5 7.8 183 29-244 2-190 (292)
18 TIGR00436 era GTP-binding prot 99.7 2.9E-16 6.2E-21 135.0 10.5 174 34-242 2-181 (270)
19 COG0218 Predicted GTPase [Gene 99.7 4.4E-16 9.6E-21 124.8 10.4 181 19-228 11-195 (200)
20 PRK09435 membrane ATPase/prote 99.7 4.6E-16 9.9E-21 136.2 10.7 183 32-229 56-259 (332)
21 PRK15494 era GTPase Era; Provi 99.7 4E-16 8.8E-21 138.1 9.6 180 33-247 53-238 (339)
22 PRK12298 obgE GTPase CgtA; Rev 99.6 3E-16 6.6E-21 140.8 7.0 185 34-246 161-354 (390)
23 COG2262 HflX GTPases [General 99.6 2.1E-14 4.4E-19 126.0 10.7 170 24-227 184-353 (411)
24 KOG1423 Ras-like GTPase ERA [C 99.5 9.7E-16 2.1E-20 129.1 0.4 195 30-245 70-291 (379)
25 COG0486 ThdF Predicted GTPase 99.5 1.1E-14 2.3E-19 129.9 6.7 155 34-229 219-375 (454)
26 KOG1489 Predicted GTP-binding 99.5 2.9E-14 6.3E-19 120.9 7.2 168 31-227 195-364 (366)
27 PRK11058 GTPase HflX; Provisio 99.5 2E-13 4.3E-18 124.0 12.2 167 29-228 194-360 (426)
28 PRK12299 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.4E-18 122.0 9.4 166 34-228 160-326 (335)
29 PRK03003 GTP-binding protein D 99.5 2.8E-13 6.2E-18 125.2 11.3 186 31-262 210-398 (472)
30 TIGR00750 lao LAO/AO transport 99.5 3.4E-13 7.3E-18 117.6 10.7 185 31-228 33-236 (300)
31 TIGR03156 GTP_HflX GTP-binding 99.5 4.3E-13 9.4E-18 119.1 10.9 163 30-227 187-349 (351)
32 TIGR03598 GTPase_YsxC ribosome 99.5 5.9E-13 1.3E-17 107.4 10.5 170 19-219 5-179 (179)
33 PRK12297 obgE GTPase CgtA; Rev 99.4 2.8E-13 6E-18 122.6 9.2 160 34-227 160-324 (424)
34 PRK00093 GTP-binding protein D 99.4 5.1E-14 1.1E-18 129.0 4.5 166 32-226 173-340 (435)
35 PF10662 PduV-EutP: Ethanolami 99.4 4E-13 8.7E-18 103.2 8.6 140 34-226 3-142 (143)
36 PRK09518 bifunctional cytidyla 99.4 2E-13 4.3E-18 131.9 8.4 167 31-227 449-618 (712)
37 COG0536 Obg Predicted GTPase [ 99.4 3.5E-13 7.5E-18 115.6 8.1 166 35-226 162-329 (369)
38 PRK12296 obgE GTPase CgtA; Rev 99.4 3.3E-13 7.1E-18 123.7 8.4 162 34-227 161-337 (500)
39 COG1084 Predicted GTPase [Gene 99.4 4.8E-13 1E-17 114.3 8.2 162 30-226 166-332 (346)
40 TIGR03594 GTPase_EngA ribosome 99.4 5.3E-13 1.1E-17 122.1 8.1 167 33-227 173-341 (429)
41 TIGR02729 Obg_CgtA Obg family 99.4 1.7E-12 3.6E-17 114.4 10.1 164 34-227 159-326 (329)
42 cd01898 Obg Obg subfamily. Th 99.4 1.1E-12 2.3E-17 104.4 8.1 164 35-227 3-168 (170)
43 COG0370 FeoB Fe2+ transport sy 99.4 1.2E-12 2.7E-17 121.5 9.3 157 33-227 4-161 (653)
44 cd04163 Era Era subfamily. Er 99.4 6E-12 1.3E-16 98.9 11.4 163 31-227 2-166 (168)
45 PRK03003 GTP-binding protein D 99.3 1.9E-12 4.2E-17 119.6 7.1 160 31-228 37-197 (472)
46 cd04171 SelB SelB subfamily. 99.3 2.7E-12 5.9E-17 101.2 6.3 158 34-226 2-162 (164)
47 cd01895 EngA2 EngA2 subfamily. 99.3 2.6E-11 5.6E-16 96.1 11.2 165 34-226 4-171 (174)
48 cd01878 HflX HflX subfamily. 99.3 1.2E-11 2.5E-16 101.8 9.3 164 30-227 39-202 (204)
49 PRK09554 feoB ferrous iron tra 99.3 7E-12 1.5E-16 121.3 8.7 160 33-228 4-166 (772)
50 TIGR03594 GTPase_EngA ribosome 99.3 1.5E-11 3.3E-16 112.4 10.1 156 35-228 2-158 (429)
51 cd04160 Arfrp1 Arfrp1 subfamil 99.3 8.1E-12 1.8E-16 99.1 7.2 163 35-226 2-165 (167)
52 cd01894 EngA1 EngA1 subfamily. 99.3 8.5E-12 1.8E-16 97.5 7.1 154 36-227 1-155 (157)
53 KOG1191 Mitochondrial GTPase [ 99.3 8.5E-12 1.8E-16 111.5 7.7 165 33-226 269-446 (531)
54 PRK09518 bifunctional cytidyla 99.3 8.6E-12 1.9E-16 120.6 7.7 160 30-227 273-433 (712)
55 cd01897 NOG NOG1 is a nucleola 99.3 3.2E-11 7E-16 95.7 9.1 160 33-227 1-165 (168)
56 PRK00093 GTP-binding protein D 99.2 4.1E-11 9E-16 109.8 10.8 157 33-227 2-159 (435)
57 PRK15467 ethanolamine utilizat 99.2 4.2E-11 9.1E-16 94.8 9.3 143 34-228 3-145 (158)
58 cd01861 Rab6 Rab6 subfamily. 99.2 2.8E-11 6.1E-16 95.3 8.2 157 35-227 3-159 (161)
59 cd01881 Obg_like The Obg-like 99.2 1.8E-11 3.8E-16 97.7 6.8 161 37-226 1-173 (176)
60 COG1163 DRG Predicted GTPase [ 99.2 1.3E-11 2.8E-16 105.4 5.7 61 30-99 61-121 (365)
61 PRK00454 engB GTP-binding prot 99.2 5.7E-11 1.2E-15 96.8 9.4 165 30-227 22-191 (196)
62 TIGR02528 EutP ethanolamine ut 99.2 9.4E-11 2E-15 90.6 9.8 138 35-225 3-140 (142)
63 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.2E-10 2.7E-15 92.2 10.6 162 33-228 1-164 (168)
64 cd01889 SelB_euk SelB subfamil 99.2 6.4E-11 1.4E-15 96.6 9.1 62 158-227 122-183 (192)
65 PRK04213 GTP-binding protein; 99.2 4.5E-11 9.8E-16 98.0 8.2 167 32-228 9-190 (201)
66 KOG1532 GTPase XAB1, interacts 99.2 2.6E-12 5.7E-17 107.1 0.8 188 33-226 20-260 (366)
67 PRK05291 trmE tRNA modificatio 99.2 5.3E-11 1.1E-15 109.3 8.8 151 33-228 216-368 (449)
68 cd04164 trmE TrmE (MnmE, ThdF, 99.2 1.4E-10 2.9E-15 90.6 10.0 151 34-227 3-154 (157)
69 cd01879 FeoB Ferrous iron tran 99.2 4.3E-11 9.3E-16 93.8 7.1 154 37-227 1-154 (158)
70 cd01876 YihA_EngB The YihA (En 99.2 2.1E-10 4.6E-15 90.3 11.1 163 35-227 2-168 (170)
71 smart00175 RAB Rab subfamily o 99.2 5.8E-11 1.2E-15 93.7 7.4 155 35-227 3-159 (164)
72 cd04157 Arl6 Arl6 subfamily. 99.2 8.3E-11 1.8E-15 92.6 8.2 158 35-226 2-160 (162)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 8.2E-11 1.8E-15 93.3 7.6 158 34-227 4-161 (166)
74 cd04112 Rab26 Rab26 subfamily. 99.2 1.8E-10 3.9E-15 93.9 9.7 157 35-228 3-161 (191)
75 cd01864 Rab19 Rab19 subfamily. 99.2 1.8E-10 3.8E-15 91.4 9.3 157 34-227 5-163 (165)
76 cd01868 Rab11_like Rab11-like. 99.2 1.5E-10 3.3E-15 91.6 8.9 158 34-227 5-162 (165)
77 cd04159 Arl10_like Arl10-like 99.2 1.3E-10 2.9E-15 90.5 8.4 156 35-227 2-158 (159)
78 cd04138 H_N_K_Ras_like H-Ras/N 99.2 2.5E-10 5.3E-15 89.7 9.8 53 157-227 107-159 (162)
79 cd04151 Arl1 Arl1 subfamily. 99.2 8.8E-11 1.9E-15 92.5 7.1 154 35-226 2-156 (158)
80 TIGR00231 small_GTP small GTP- 99.2 1.6E-10 3.4E-15 89.7 8.3 52 157-226 109-160 (161)
81 cd00881 GTP_translation_factor 99.2 2.4E-10 5.1E-15 92.2 9.6 69 157-227 115-184 (189)
82 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 2.4E-10 5.3E-15 93.8 9.8 158 35-227 3-165 (201)
83 cd04154 Arl2 Arl2 subfamily. 99.1 1E-10 2.2E-15 93.7 7.3 156 33-226 15-171 (173)
84 cd04156 ARLTS1 ARLTS1 subfamil 99.1 1.2E-10 2.5E-15 91.7 7.6 156 35-226 2-158 (160)
85 cd01862 Rab7 Rab7 subfamily. 99.1 1.2E-10 2.6E-15 92.6 7.7 55 157-227 110-164 (172)
86 cd04123 Rab21 Rab21 subfamily. 99.1 3.4E-10 7.4E-15 88.9 10.1 157 35-227 3-159 (162)
87 cd04136 Rap_like Rap-like subf 99.1 1.8E-10 4E-15 90.7 8.6 158 34-227 3-160 (163)
88 cd00154 Rab Rab family. Rab G 99.1 1.3E-10 2.9E-15 90.5 7.4 154 35-226 3-158 (159)
89 cd01866 Rab2 Rab2 subfamily. 99.1 3E-10 6.6E-15 90.4 9.5 157 34-227 6-163 (168)
90 cd00876 Ras Ras family. The R 99.1 2E-10 4.3E-15 90.0 8.2 157 35-227 2-158 (160)
91 cd04113 Rab4 Rab4 subfamily. 99.1 1.3E-10 2.8E-15 91.6 7.2 155 35-226 3-158 (161)
92 cd00878 Arf_Arl Arf (ADP-ribos 99.1 1.9E-10 4E-15 90.4 7.9 154 35-226 2-156 (158)
93 cd04119 RJL RJL (RabJ-Like) su 99.1 2E-10 4.4E-15 90.7 8.0 157 35-227 3-164 (168)
94 smart00178 SAR Sar1p-like memb 99.1 1.6E-10 3.4E-15 93.7 7.5 164 33-227 18-182 (184)
95 cd04110 Rab35 Rab35 subfamily. 99.1 2.1E-10 4.6E-15 94.1 8.2 156 33-227 7-164 (199)
96 cd04139 RalA_RalB RalA/RalB su 99.1 4E-10 8.7E-15 88.7 9.5 54 157-227 106-159 (164)
97 cd01860 Rab5_related Rab5-rela 99.1 2.4E-10 5.1E-15 90.2 8.2 156 35-227 4-160 (163)
98 cd04145 M_R_Ras_like M-Ras/R-R 99.1 3.4E-10 7.4E-15 89.3 9.1 158 34-227 4-161 (164)
99 smart00173 RAS Ras subfamily o 99.1 3E-10 6.5E-15 89.7 8.8 54 157-227 106-159 (164)
100 cd04175 Rap1 Rap1 subgroup. T 99.1 3.4E-10 7.3E-15 89.6 8.8 156 35-227 4-160 (164)
101 cd00880 Era_like Era (E. coli 99.1 6.7E-10 1.5E-14 86.1 10.3 157 37-227 1-161 (163)
102 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 2.2E-10 4.8E-15 91.9 7.6 155 34-226 17-172 (174)
103 cd04155 Arl3 Arl3 subfamily. 99.1 1.8E-10 3.9E-15 91.9 7.0 157 32-226 14-171 (173)
104 PF00009 GTP_EFTU: Elongation 99.1 1.9E-10 4.2E-15 93.5 7.2 167 31-228 2-185 (188)
105 cd04106 Rab23_lke Rab23-like s 99.1 2.2E-10 4.8E-15 90.2 7.4 154 35-227 3-160 (162)
106 TIGR00437 feoB ferrous iron tr 99.1 1.4E-10 3E-15 109.7 6.9 151 39-227 1-152 (591)
107 cd01865 Rab3 Rab3 subfamily. 99.1 4.8E-10 1E-14 89.0 9.0 155 35-227 4-160 (165)
108 cd01867 Rab8_Rab10_Rab13_like 99.1 6.1E-10 1.3E-14 88.5 9.6 156 34-227 5-162 (167)
109 cd00879 Sar1 Sar1 subfamily. 99.1 2.9E-10 6.2E-15 92.3 7.8 167 33-227 20-188 (190)
110 PLN03118 Rab family protein; P 99.1 4.8E-10 1E-14 92.8 9.2 158 34-227 16-174 (211)
111 cd04109 Rab28 Rab28 subfamily. 99.1 7.8E-10 1.7E-14 91.9 10.4 159 35-228 3-164 (215)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 8.9E-10 1.9E-14 89.2 10.4 159 35-227 6-167 (183)
113 cd01863 Rab18 Rab18 subfamily. 99.1 6.4E-10 1.4E-14 87.6 9.3 156 35-226 3-158 (161)
114 cd04114 Rab30 Rab30 subfamily. 99.1 7.2E-10 1.6E-14 88.0 9.6 158 32-227 7-166 (169)
115 cd04149 Arf6 Arf6 subfamily. 99.1 2.7E-10 5.8E-15 91.0 6.7 153 34-226 11-166 (168)
116 COG1126 GlnQ ABC-type polar am 99.1 2.9E-10 6.3E-15 92.3 6.5 45 10-54 1-50 (240)
117 cd04158 ARD1 ARD1 subfamily. 99.1 3.1E-10 6.8E-15 90.5 6.6 157 35-228 2-159 (169)
118 cd04101 RabL4 RabL4 (Rab-like4 99.1 8.1E-10 1.8E-14 87.3 8.9 157 35-227 3-161 (164)
119 cd04150 Arf1_5_like Arf1-Arf5- 99.1 5.8E-10 1.3E-14 88.1 7.9 154 35-226 3-157 (159)
120 cd04122 Rab14 Rab14 subfamily. 99.0 1.4E-09 3E-14 86.4 9.5 154 35-226 5-160 (166)
121 PRK13768 GTPase; Provisional 99.0 7E-10 1.5E-14 94.4 8.3 38 33-70 3-42 (253)
122 cd04127 Rab27A Rab27a subfamil 99.0 1.7E-09 3.7E-14 86.9 9.8 165 34-227 6-174 (180)
123 cd01888 eIF2_gamma eIF2-gamma 99.0 3.2E-09 6.9E-14 87.5 11.6 60 158-229 139-198 (203)
124 PRK10512 selenocysteinyl-tRNA- 99.0 7.7E-10 1.7E-14 105.0 9.0 162 34-228 2-164 (614)
125 cd04137 RheB Rheb (Ras Homolog 99.0 1.5E-09 3.2E-14 87.3 9.3 54 157-227 107-160 (180)
126 cd04118 Rab24 Rab24 subfamily. 99.0 7.3E-10 1.6E-14 90.2 7.2 157 35-227 3-163 (193)
127 cd04124 RabL2 RabL2 subfamily. 99.0 5.2E-10 1.1E-14 88.5 6.1 21 35-55 3-23 (161)
128 cd04143 Rhes_like Rhes_like su 99.0 3.1E-09 6.7E-14 90.2 10.9 160 35-229 3-170 (247)
129 cd04142 RRP22 RRP22 subfamily. 99.0 1.4E-09 3.1E-14 89.2 8.4 165 35-226 3-170 (198)
130 cd04165 GTPBP1_like GTPBP1-lik 99.0 7E-09 1.5E-13 86.7 12.5 70 157-228 139-221 (224)
131 cd04166 CysN_ATPS CysN_ATPS su 99.0 1.1E-09 2.3E-14 90.7 7.4 20 35-54 2-21 (208)
132 cd01892 Miro2 Miro2 subfamily. 99.0 2.1E-09 4.6E-14 85.8 8.8 156 34-228 6-164 (169)
133 smart00177 ARF ARF-like small 99.0 1.5E-09 3.3E-14 87.2 7.9 158 33-228 14-172 (175)
134 cd04144 Ras2 Ras2 subfamily. 99.0 3.1E-09 6.8E-14 86.4 9.8 157 35-227 2-160 (190)
135 cd04176 Rap2 Rap2 subgroup. T 99.0 2.1E-09 4.6E-14 84.8 8.3 156 35-227 4-160 (163)
136 PTZ00369 Ras-like protein; Pro 99.0 3.6E-09 7.7E-14 86.0 9.8 157 34-227 7-164 (189)
137 PLN00223 ADP-ribosylation fact 99.0 1.6E-09 3.5E-14 87.6 7.5 156 34-227 19-175 (181)
138 cd04125 RabA_like RabA-like su 99.0 3.4E-09 7.4E-14 85.9 9.3 155 35-227 3-159 (188)
139 cd01890 LepA LepA subfamily. 99.0 1.1E-08 2.5E-13 81.9 12.1 56 157-228 120-175 (179)
140 PTZ00133 ADP-ribosylation fact 99.0 1.7E-09 3.7E-14 87.5 7.2 156 35-228 20-176 (182)
141 cd04140 ARHI_like ARHI subfami 99.0 3.1E-09 6.8E-14 84.3 8.5 54 157-227 109-162 (165)
142 cd04120 Rab12 Rab12 subfamily. 99.0 5.4E-09 1.2E-13 86.0 10.1 156 35-227 3-160 (202)
143 cd00877 Ran Ran (Ras-related n 99.0 7.8E-10 1.7E-14 88.0 4.8 153 35-228 3-157 (166)
144 cd04148 RGK RGK subfamily. Th 98.9 5.4E-09 1.2E-13 87.2 10.0 156 35-227 3-160 (221)
145 cd01884 EF_Tu EF-Tu subfamily. 98.9 7.2E-09 1.6E-13 84.8 10.4 22 34-55 4-25 (195)
146 PF01926 MMR_HSR1: 50S ribosom 98.9 4E-10 8.7E-15 84.2 2.7 87 35-129 2-88 (116)
147 TIGR00475 selB selenocysteine- 98.9 7.2E-09 1.6E-13 98.0 11.7 157 34-227 2-163 (581)
148 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 4E-09 8.7E-14 84.3 8.4 158 35-228 3-163 (170)
149 cd04147 Ras_dva Ras-dva subfam 98.9 6.6E-09 1.4E-13 85.1 9.8 159 35-227 2-160 (198)
150 PRK09866 hypothetical protein; 98.9 4.3E-09 9.4E-14 98.1 9.5 63 158-230 291-353 (741)
151 cd01896 DRG The developmentall 98.9 6.1E-09 1.3E-13 87.6 9.6 22 34-55 2-23 (233)
152 cd04111 Rab39 Rab39 subfamily. 98.9 6.3E-09 1.4E-13 86.2 9.6 157 35-227 5-163 (211)
153 cd04117 Rab15 Rab15 subfamily. 98.9 1E-08 2.2E-13 81.0 10.3 154 35-226 3-158 (161)
154 cd04116 Rab9 Rab9 subfamily. 98.9 5.8E-09 1.3E-13 83.0 8.8 53 157-226 115-167 (170)
155 cd04161 Arl2l1_Arl13_like Arl2 98.9 3.7E-09 7.9E-14 84.2 7.5 157 35-226 2-165 (167)
156 PRK12317 elongation factor 1-a 98.9 1.4E-09 3.1E-14 99.4 5.5 21 34-54 8-28 (425)
157 TIGR00450 mnmE_trmE_thdF tRNA 98.9 5.2E-09 1.1E-13 95.8 9.1 119 34-171 205-325 (442)
158 cd04177 RSR1 RSR1 subgroup. R 98.9 6.3E-09 1.4E-13 82.8 8.2 55 157-227 107-161 (168)
159 COG2884 FtsE Predicted ATPase 98.9 1.6E-09 3.5E-14 86.3 4.3 59 11-69 1-67 (223)
160 cd04146 RERG_RasL11_like RERG/ 98.9 7E-09 1.5E-13 82.1 8.0 20 35-54 2-21 (165)
161 PLN03108 Rab family protein; P 98.9 5.2E-09 1.1E-13 86.6 7.5 53 157-226 112-164 (210)
162 cd04121 Rab40 Rab40 subfamily. 98.9 6.2E-09 1.3E-13 84.8 7.7 155 34-227 8-164 (189)
163 cd01893 Miro1 Miro1 subfamily. 98.9 6.1E-09 1.3E-13 82.7 7.5 159 35-228 3-162 (166)
164 PF03029 ATP_bind_1: Conserved 98.9 1.7E-09 3.6E-14 91.2 4.4 34 37-70 1-36 (238)
165 PF00025 Arf: ADP-ribosylation 98.9 4E-09 8.8E-14 84.8 6.4 156 33-227 15-173 (175)
166 cd04132 Rho4_like Rho4-like su 98.9 8.8E-09 1.9E-13 83.3 8.1 157 35-227 3-164 (187)
167 cd01891 TypA_BipA TypA (tyrosi 98.9 1.3E-08 2.8E-13 83.1 9.1 23 32-54 2-24 (194)
168 PLN03110 Rab GTPase; Provision 98.9 1.1E-08 2.4E-13 85.1 8.6 154 34-226 14-170 (216)
169 TIGR00491 aIF-2 translation in 98.9 1E-08 2.3E-13 96.6 9.5 25 30-54 2-26 (590)
170 cd04115 Rab33B_Rab33A Rab33B/R 98.9 1.5E-08 3.3E-13 80.7 9.1 22 33-54 3-24 (170)
171 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 7.7E-09 1.7E-13 84.7 7.5 172 35-227 3-181 (196)
172 cd04104 p47_IIGP_like p47 (47- 98.9 2.5E-08 5.3E-13 81.8 10.5 167 35-227 4-181 (197)
173 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 6.9E-09 1.5E-13 82.4 6.9 21 35-55 2-22 (164)
174 smart00174 RHO Rho (Ras homolo 98.8 3.4E-09 7.4E-14 84.5 5.1 21 35-55 1-21 (174)
175 cd00157 Rho Rho (Ras homology) 98.8 4.5E-09 9.7E-14 83.4 5.6 21 35-55 3-23 (171)
176 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 1.3E-08 2.9E-13 81.5 8.1 156 35-227 5-161 (172)
177 COG1120 FepC ABC-type cobalami 98.8 4.1E-09 9E-14 88.9 5.4 46 10-55 1-51 (258)
178 cd04128 Spg1 Spg1p. Spg1p (se 98.8 8.7E-09 1.9E-13 83.4 7.1 160 35-228 3-164 (182)
179 PRK05306 infB translation init 98.8 1.9E-08 4.1E-13 97.5 10.3 162 29-227 287-449 (787)
180 TIGR00487 IF-2 translation ini 98.8 2.1E-08 4.7E-13 94.6 10.0 159 30-226 85-246 (587)
181 PLN03071 GTP-binding nuclear p 98.8 8.9E-09 1.9E-13 85.8 6.6 153 34-227 15-169 (219)
182 COG4917 EutP Ethanolamine util 98.8 3.1E-08 6.7E-13 73.4 8.4 139 34-227 3-143 (148)
183 CHL00189 infB translation init 98.8 3.3E-08 7.1E-13 95.1 10.9 162 30-227 242-407 (742)
184 cd03114 ArgK-like The function 98.8 5E-08 1.1E-12 76.3 10.0 98 34-134 1-105 (148)
185 cd01899 Ygr210 Ygr210 subfamil 98.8 1.7E-08 3.7E-13 88.5 7.8 53 157-229 215-268 (318)
186 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 8.3E-09 1.8E-13 86.7 5.4 46 9-54 2-52 (254)
187 KOG0410 Predicted GTP binding 98.8 1.2E-08 2.7E-13 87.2 5.9 160 25-226 171-337 (410)
188 TIGR03680 eif2g_arch translati 98.8 2.1E-08 4.6E-13 91.1 7.9 59 158-228 136-194 (406)
189 PRK12736 elongation factor Tu; 98.8 4E-08 8.6E-13 89.0 9.5 21 34-54 14-34 (394)
190 COG0411 LivG ABC-type branched 98.8 2.3E-09 4.9E-14 88.7 1.2 47 9-55 2-53 (250)
191 cd00882 Ras_like_GTPase Ras-li 98.8 2.1E-08 4.6E-13 76.6 6.6 53 157-226 103-156 (157)
192 cd01883 EF1_alpha Eukaryotic e 98.7 2.4E-08 5.1E-13 83.3 7.1 20 35-54 2-21 (219)
193 TIGR00176 mobB molybdopterin-g 98.7 1.3E-08 2.7E-13 80.3 5.1 92 34-131 1-100 (155)
194 COG3842 PotA ABC-type spermidi 98.7 1E-08 2.2E-13 90.3 5.0 48 8-55 2-54 (352)
195 COG1116 TauB ABC-type nitrate/ 98.7 1.6E-08 3.4E-13 84.2 5.7 46 10-55 2-52 (248)
196 CHL00071 tufA elongation facto 98.7 3.7E-08 7.9E-13 89.7 8.5 22 34-55 14-35 (409)
197 PRK05506 bifunctional sulfate 98.7 8E-09 1.7E-13 98.9 4.1 20 35-54 27-46 (632)
198 cd04130 Wrch_1 Wrch-1 subfamil 98.7 2.3E-08 5.1E-13 79.9 6.1 20 35-54 3-22 (173)
199 COG1117 PstB ABC-type phosphat 98.7 1.9E-08 4.2E-13 81.7 5.5 45 8-52 4-53 (253)
200 TIGR01393 lepA GTP-binding pro 98.7 2.1E-07 4.6E-12 88.3 13.4 74 157-247 123-196 (595)
201 cd04126 Rab20 Rab20 subfamily. 98.7 4.8E-08 1E-12 81.4 8.0 21 35-55 3-23 (220)
202 cd01870 RhoA_like RhoA-like su 98.7 3.3E-08 7.1E-13 78.9 6.7 21 35-55 4-24 (175)
203 COG1127 Ttg2A ABC-type transpo 98.7 2.2E-08 4.8E-13 82.6 5.6 49 7-55 4-57 (263)
204 cd04135 Tc10 TC10 subfamily. 98.7 3.2E-08 6.9E-13 78.9 6.0 21 35-55 3-23 (174)
205 cd01871 Rac1_like Rac1-like su 98.7 4.3E-08 9.3E-13 78.7 6.7 21 35-55 4-24 (174)
206 COG3638 ABC-type phosphate/pho 98.7 2.2E-08 4.8E-13 82.5 4.9 45 10-54 2-52 (258)
207 PRK05124 cysN sulfate adenylyl 98.7 1.5E-08 3.3E-13 93.7 4.3 54 159-221 163-216 (474)
208 cd01882 BMS1 Bms1. Bms1 is an 98.7 3.2E-08 6.9E-13 82.8 5.6 22 34-55 41-62 (225)
209 COG3839 MalK ABC-type sugar tr 98.7 2.3E-08 5E-13 87.5 4.8 45 11-55 3-52 (338)
210 PRK10575 iron-hydroxamate tran 98.7 3.1E-08 6.7E-13 84.9 5.6 55 1-55 1-60 (265)
211 cd04134 Rho3 Rho3 subfamily. 98.7 9E-08 1.9E-12 77.8 7.9 21 35-55 3-23 (189)
212 PRK09602 translation-associate 98.7 8.9E-08 1.9E-12 86.4 8.6 22 34-55 3-24 (396)
213 cd01874 Cdc42 Cdc42 subfamily. 98.7 5.3E-08 1.1E-12 78.2 6.4 21 35-55 4-24 (175)
214 cd01886 EF-G Elongation factor 98.7 2.5E-07 5.4E-12 79.5 10.9 20 35-54 2-21 (270)
215 PTZ00327 eukaryotic translatio 98.7 1.5E-07 3.4E-12 86.3 10.1 57 159-227 174-230 (460)
216 cd01875 RhoG RhoG subfamily. 98.6 1.2E-07 2.6E-12 77.2 8.3 166 34-229 5-176 (191)
217 COG1763 MobB Molybdopterin-gua 98.6 7.8E-08 1.7E-12 75.7 6.7 39 32-70 2-42 (161)
218 PRK14238 phosphate transporter 98.6 4.8E-08 1.1E-12 84.0 6.0 52 4-55 17-73 (271)
219 PRK10247 putative ABC transpor 98.6 5.4E-08 1.2E-12 81.4 6.1 48 8-55 4-56 (225)
220 PRK12735 elongation factor Tu; 98.6 1.7E-07 3.7E-12 84.9 9.6 21 34-54 14-34 (396)
221 PRK14242 phosphate transporter 98.6 5.1E-08 1.1E-12 83.0 5.9 47 8-54 3-54 (253)
222 PF09439 SRPRB: Signal recogni 98.6 1.7E-07 3.7E-12 75.3 8.4 125 32-172 3-128 (181)
223 PRK13536 nodulation factor exp 98.6 4E-08 8.7E-13 87.2 5.3 48 8-55 38-90 (340)
224 TIGR02034 CysN sulfate adenyly 98.6 2.7E-08 5.9E-13 90.4 4.3 20 35-54 3-22 (406)
225 PRK13648 cbiO cobalt transport 98.6 4.6E-08 1E-12 84.1 5.5 51 1-55 1-58 (269)
226 PRK04004 translation initiatio 98.6 1.7E-07 3.6E-12 88.8 9.7 26 29-54 3-28 (586)
227 COG1125 OpuBA ABC-type proline 98.6 2.9E-08 6.4E-13 82.6 4.0 43 11-53 1-48 (309)
228 cd04103 Centaurin_gamma Centau 98.6 5.4E-08 1.2E-12 76.9 5.4 20 35-54 3-22 (158)
229 PRK11831 putative ABC transpor 98.6 4E-08 8.8E-13 84.4 5.0 49 7-55 3-56 (269)
230 PRK04000 translation initiatio 98.6 1.4E-07 3.1E-12 85.8 8.4 58 159-228 142-199 (411)
231 COG1131 CcmA ABC-type multidru 98.6 4.3E-08 9.4E-13 85.2 4.7 46 10-55 3-54 (293)
232 TIGR01288 nodI ATP-binding ABC 98.6 5.1E-08 1.1E-12 85.2 5.2 47 9-55 2-53 (303)
233 PRK13543 cytochrome c biogenes 98.6 7.2E-08 1.6E-12 80.0 5.8 50 6-55 6-60 (214)
234 PRK14248 phosphate ABC transpo 98.6 7.6E-08 1.6E-12 82.7 6.1 50 5-54 15-69 (268)
235 PF00071 Ras: Ras family; Int 98.6 1E-07 2.2E-12 75.0 6.0 154 35-225 2-156 (162)
236 COG2229 Predicted GTPase [Gene 98.6 1.4E-06 3.1E-11 69.0 12.3 155 31-228 9-176 (187)
237 PRK00049 elongation factor Tu; 98.6 2.4E-07 5.2E-12 84.0 9.2 21 34-54 14-34 (396)
238 PRK13537 nodulation ABC transp 98.6 6.3E-08 1.4E-12 84.8 5.1 47 9-55 5-56 (306)
239 cd04105 SR_beta Signal recogni 98.6 4.9E-07 1.1E-11 74.5 10.0 23 33-55 1-23 (203)
240 COG4604 CeuD ABC-type enteroch 98.6 3.4E-08 7.4E-13 79.3 2.9 58 11-68 1-65 (252)
241 COG4152 ABC-type uncharacteriz 98.6 3.8E-08 8.3E-13 81.5 3.3 46 10-55 1-51 (300)
242 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.6 2.4E-07 5.1E-12 75.0 7.6 21 35-55 8-28 (182)
243 COG1136 SalX ABC-type antimicr 98.5 9.9E-08 2.1E-12 79.0 5.2 44 11-54 1-53 (226)
244 PRK10751 molybdopterin-guanine 98.5 3E-07 6.5E-12 73.4 7.8 41 29-69 3-45 (173)
245 COG1135 AbcC ABC-type metal io 98.5 1.4E-07 3.1E-12 80.6 6.1 42 11-52 1-52 (339)
246 PRK11247 ssuB aliphatic sulfon 98.5 1.1E-07 2.3E-12 81.3 5.3 49 7-55 8-61 (257)
247 PRK14255 phosphate ABC transpo 98.5 1.3E-07 2.8E-12 80.5 5.8 47 8-54 2-53 (252)
248 COG0410 LivF ABC-type branched 98.5 6.6E-08 1.4E-12 79.4 3.8 46 10-55 2-52 (237)
249 cd04129 Rho2 Rho2 subfamily. 98.5 3.1E-07 6.7E-12 74.5 7.7 21 34-54 3-23 (187)
250 PRK13539 cytochrome c biogenes 98.5 1.1E-07 2.4E-12 78.5 5.1 45 11-55 2-51 (207)
251 COG1119 ModF ABC-type molybden 98.5 3.1E-07 6.7E-12 76.2 7.5 66 5-70 25-97 (257)
252 COG1124 DppF ABC-type dipeptid 98.5 1.5E-07 3.3E-12 77.9 5.7 45 10-54 2-55 (252)
253 PTZ00132 GTP-binding nuclear p 98.5 2.9E-07 6.2E-12 76.4 7.3 21 34-54 11-31 (215)
254 cd03296 ABC_CysA_sulfate_impor 98.5 1.1E-07 2.4E-12 80.2 4.9 45 11-55 2-51 (239)
255 TIGR00483 EF-1_alpha translati 98.5 4.1E-07 9E-12 83.3 9.0 21 34-54 9-29 (426)
256 COG4559 ABC-type hemin transpo 98.5 2.1E-07 4.5E-12 75.6 6.0 45 11-55 1-50 (259)
257 cd04131 Rnd Rnd subfamily. Th 98.5 2.4E-07 5.2E-12 74.7 6.4 21 35-55 4-24 (178)
258 PTZ00141 elongation factor 1- 98.5 4.8E-07 1E-11 83.1 9.1 21 34-54 9-29 (446)
259 TIGR02323 CP_lyasePhnK phospho 98.5 1.3E-07 2.8E-12 80.5 5.1 46 10-55 2-52 (253)
260 cd03265 ABC_DrrA DrrA is the A 98.5 1E-07 2.2E-12 79.4 4.3 44 12-55 1-49 (220)
261 PRK10744 pstB phosphate transp 98.5 1.4E-07 3.1E-12 80.6 5.3 50 6-55 8-62 (260)
262 PRK11248 tauB taurine transpor 98.5 1.2E-07 2.5E-12 81.0 4.6 45 11-55 1-50 (255)
263 COG1129 MglA ABC-type sugar tr 98.5 1.5E-07 3.2E-12 86.2 5.5 48 8-55 5-57 (500)
264 cd03259 ABC_Carb_Solutes_like 98.5 1.2E-07 2.5E-12 78.6 4.4 44 12-55 1-49 (213)
265 PRK13638 cbiO cobalt transport 98.5 1.2E-07 2.7E-12 81.5 4.8 45 11-55 1-50 (271)
266 cd03261 ABC_Org_Solvent_Resist 98.5 9.1E-08 2E-12 80.5 3.9 44 12-55 1-49 (235)
267 PRK13636 cbiO cobalt transport 98.5 1.6E-07 3.4E-12 81.4 5.4 47 9-55 3-55 (283)
268 PRK05433 GTP-binding protein L 98.5 1.7E-06 3.6E-11 82.3 12.7 74 157-247 127-200 (600)
269 PRK13538 cytochrome c biogenes 98.5 1.3E-07 2.9E-12 77.8 4.7 45 11-55 1-50 (204)
270 PRK09452 potA putrescine/sperm 98.5 1.2E-07 2.6E-12 85.2 4.7 51 5-55 8-63 (375)
271 PRK13540 cytochrome c biogenes 98.5 1.3E-07 2.8E-12 77.7 4.6 45 11-55 1-50 (200)
272 PRK10584 putative ABC transpor 98.5 1.6E-07 3.5E-12 78.6 5.3 46 10-55 5-59 (228)
273 cd01853 Toc34_like Toc34-like 98.5 3E-07 6.4E-12 78.1 6.8 130 33-173 32-166 (249)
274 PRK14265 phosphate ABC transpo 98.5 1.8E-07 3.9E-12 80.6 5.6 51 5-55 14-69 (274)
275 PRK11614 livF leucine/isoleuci 98.5 1.5E-07 3.1E-12 79.4 4.9 45 11-55 5-54 (237)
276 PRK14259 phosphate ABC transpo 98.5 2E-07 4.4E-12 80.1 5.8 49 7-55 9-62 (269)
277 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.5 4.9E-07 1.1E-11 75.9 8.0 22 34-55 15-36 (232)
278 cd04167 Snu114p Snu114p subfam 98.5 7.7E-08 1.7E-12 79.8 3.1 61 157-218 124-191 (213)
279 PRK14237 phosphate transporter 98.5 2E-07 4.3E-12 80.0 5.8 49 7-55 16-69 (267)
280 TIGR02673 FtsE cell division A 98.5 1.6E-07 3.4E-12 77.9 4.9 45 11-55 1-51 (214)
281 TIGR02315 ABC_phnC phosphonate 98.5 1.5E-07 3.2E-12 79.6 4.8 45 11-55 1-51 (243)
282 COG4598 HisP ABC-type histidin 98.5 1.5E-07 3.3E-12 74.6 4.5 44 9-52 4-52 (256)
283 PRK10253 iron-enterobactin tra 98.5 1.6E-07 3.6E-12 80.5 5.1 49 7-55 3-56 (265)
284 PRK11629 lolD lipoprotein tran 98.5 1.5E-07 3.3E-12 79.1 4.8 47 9-55 3-58 (233)
285 cd03258 ABC_MetN_methionine_tr 98.5 1.6E-07 3.5E-12 78.9 4.9 45 11-55 1-54 (233)
286 smart00176 RAN Ran (Ras-relate 98.5 2.6E-07 5.7E-12 75.9 6.0 52 157-227 100-151 (200)
287 PRK11264 putative amino-acid A 98.5 1.8E-07 3.9E-12 79.4 5.2 45 11-55 3-52 (250)
288 PRK14274 phosphate ABC transpo 98.5 2E-07 4.2E-12 79.7 5.4 48 8-55 9-61 (259)
289 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 1.5E-07 3.4E-12 79.2 4.6 45 11-55 1-50 (236)
290 PRK14273 phosphate ABC transpo 98.5 3.8E-07 8.3E-12 77.6 7.1 47 9-55 5-56 (254)
291 PRK11300 livG leucine/isoleuci 98.5 1.8E-07 3.8E-12 79.7 5.0 46 10-55 4-54 (255)
292 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.5 1.4E-07 2.9E-12 78.5 4.2 44 12-55 1-53 (218)
293 PRK11701 phnK phosphonate C-P 98.5 1.9E-07 4.2E-12 79.7 5.2 46 10-55 5-55 (258)
294 cd04133 Rop_like Rop subfamily 98.5 2.6E-07 5.5E-12 74.4 5.6 21 35-55 4-24 (176)
295 TIGR00485 EF-Tu translation el 98.5 4E-07 8.6E-12 82.5 7.4 21 34-54 14-34 (394)
296 PRK11231 fecE iron-dicitrate t 98.5 1.8E-07 3.9E-12 79.8 4.9 45 11-55 2-51 (255)
297 cd03266 ABC_NatA_sodium_export 98.5 1.9E-07 4E-12 77.7 4.9 45 11-55 1-54 (218)
298 TIGR03411 urea_trans_UrtD urea 98.5 1.8E-07 4E-12 79.0 4.9 46 10-55 1-51 (242)
299 cd03257 ABC_NikE_OppD_transpor 98.5 1.7E-07 3.7E-12 78.3 4.6 45 11-55 1-54 (228)
300 PRK14268 phosphate ABC transpo 98.5 2.8E-07 6E-12 78.7 6.0 48 8-55 9-61 (258)
301 PRK10895 lipopolysaccharide AB 98.5 1.8E-07 3.9E-12 79.0 4.8 45 11-55 3-52 (241)
302 PRK14250 phosphate ABC transpo 98.5 2E-07 4.4E-12 78.8 5.0 45 11-55 3-52 (241)
303 TIGR03522 GldA_ABC_ATP gliding 98.5 1.7E-07 3.7E-12 81.9 4.6 45 11-55 2-51 (301)
304 TIGR00960 3a0501s02 Type II (G 98.5 1.7E-07 3.7E-12 77.8 4.4 45 11-55 1-52 (216)
305 PRK11124 artP arginine transpo 98.5 2E-07 4.4E-12 78.7 4.9 45 11-55 2-51 (242)
306 PRK13632 cbiO cobalt transport 98.5 2.3E-07 5E-12 79.8 5.3 49 7-55 3-58 (271)
307 CHL00131 ycf16 sulfate ABC tra 98.5 3E-07 6.4E-12 78.2 5.9 45 10-54 6-55 (252)
308 PRK09493 glnQ glutamine ABC tr 98.5 1.9E-07 4.2E-12 78.8 4.7 45 11-55 1-50 (240)
309 PLN03127 Elongation factor Tu; 98.5 5.2E-07 1.1E-11 82.9 7.8 21 34-54 63-83 (447)
310 COG4107 PhnK ABC-type phosphon 98.5 1.7E-07 3.7E-12 74.0 3.9 47 9-55 4-55 (258)
311 PRK09544 znuC high-affinity zi 98.4 2.1E-07 4.5E-12 79.3 4.8 46 10-55 3-53 (251)
312 TIGR00972 3a0107s01c2 phosphat 98.4 2.1E-07 4.6E-12 78.9 4.9 45 11-55 1-50 (247)
313 cd03218 ABC_YhbG The ABC trans 98.4 1.9E-07 4.1E-12 78.4 4.5 44 12-55 1-49 (232)
314 PRK15439 autoinducer 2 ABC tra 98.4 2.5E-07 5.4E-12 86.6 5.7 47 9-55 9-60 (510)
315 PRK11432 fbpC ferric transport 98.4 2.1E-07 4.6E-12 82.9 4.9 47 9-55 4-55 (351)
316 cd03268 ABC_BcrA_bacitracin_re 98.4 1.9E-07 4E-12 77.1 4.3 44 12-55 1-49 (208)
317 PRK14239 phosphate transporter 98.4 3.3E-07 7E-12 77.9 5.8 45 10-54 4-53 (252)
318 PRK09536 btuD corrinoid ABC tr 98.4 1.9E-07 4E-12 84.6 4.5 46 10-55 2-52 (402)
319 PRK14243 phosphate transporter 98.4 3.4E-07 7.4E-12 78.5 5.9 49 6-54 5-58 (264)
320 cd03224 ABC_TM1139_LivF_branch 98.4 1.6E-07 3.5E-12 78.2 3.8 44 12-55 1-49 (222)
321 PRK13548 hmuV hemin importer A 98.4 2.5E-07 5.3E-12 79.1 5.0 45 11-55 2-51 (258)
322 cd03301 ABC_MalK_N The N-termi 98.4 2E-07 4.4E-12 77.2 4.3 44 12-55 1-49 (213)
323 cd03260 ABC_PstB_phosphate_tra 98.4 2E-07 4.3E-12 78.0 4.2 44 12-55 1-49 (227)
324 PRK14261 phosphate ABC transpo 98.4 3.3E-07 7E-12 78.0 5.6 46 9-54 4-54 (253)
325 PRK14236 phosphate transporter 98.4 3.5E-07 7.5E-12 78.8 5.8 50 6-55 20-74 (272)
326 cd03263 ABC_subfamily_A The AB 98.4 2.2E-07 4.7E-12 77.3 4.4 44 12-55 1-51 (220)
327 PRK10218 GTP-binding protein; 98.4 3.7E-06 7.9E-11 79.9 13.1 24 31-54 4-27 (607)
328 cd03216 ABC_Carb_Monos_I This 98.4 2E-07 4.4E-12 74.0 4.0 44 12-55 1-49 (163)
329 PRK14267 phosphate ABC transpo 98.4 3.3E-07 7.1E-12 78.0 5.5 46 10-55 3-53 (253)
330 TIGR03265 PhnT2 putative 2-ami 98.4 1.9E-07 4.1E-12 83.3 4.2 46 10-55 3-53 (353)
331 PRK14251 phosphate ABC transpo 98.4 5.3E-07 1.1E-11 76.6 6.8 46 10-55 3-53 (251)
332 PRK14256 phosphate ABC transpo 98.4 3.4E-07 7.4E-12 77.8 5.6 47 9-55 2-53 (252)
333 cd03262 ABC_HisP_GlnQ_permease 98.4 2.5E-07 5.4E-12 76.6 4.6 44 12-55 1-49 (213)
334 cd03226 ABC_cobalt_CbiO_domain 98.4 1.8E-07 3.9E-12 77.1 3.6 43 13-55 1-49 (205)
335 KOG0090 Signal recognition par 98.4 9E-07 2E-11 71.7 7.5 139 33-189 39-178 (238)
336 cd03219 ABC_Mj1267_LivG_branch 98.4 2.2E-07 4.7E-12 78.2 4.2 44 12-55 1-49 (236)
337 PRK14235 phosphate transporter 98.4 3.4E-07 7.3E-12 78.6 5.4 49 7-55 15-68 (267)
338 PRK14245 phosphate ABC transpo 98.4 3.3E-07 7.2E-12 77.8 5.3 45 10-54 2-51 (250)
339 PRK14241 phosphate transporter 98.4 3.4E-07 7.3E-12 78.2 5.4 46 10-55 3-53 (258)
340 PRK15079 oligopeptide ABC tran 98.4 3.2E-07 6.9E-12 81.2 5.3 51 5-55 2-70 (331)
341 PRK10851 sulfate/thiosulfate t 98.4 2.4E-07 5.3E-12 82.6 4.6 46 10-55 1-51 (353)
342 KOG0073 GTP-binding ADP-ribosy 98.4 8.5E-07 1.9E-11 68.8 6.9 152 35-226 19-174 (185)
343 PRK14271 phosphate ABC transpo 98.4 6E-07 1.3E-11 77.5 6.9 47 9-55 19-70 (276)
344 PRK09984 phosphonate/organopho 98.4 3.7E-07 8E-12 78.1 5.5 47 9-55 2-53 (262)
345 PRK10908 cell division protein 98.4 2.6E-07 5.6E-12 77.1 4.5 45 11-55 1-51 (222)
346 cd03293 ABC_NrtD_SsuB_transpor 98.4 2.1E-07 4.6E-12 77.5 3.9 44 12-55 1-53 (220)
347 PRK10636 putative ABC transpor 98.4 2.4E-07 5.3E-12 88.9 4.8 45 11-55 1-50 (638)
348 PRK14247 phosphate ABC transpo 98.4 3.8E-07 8.2E-12 77.5 5.5 45 11-55 3-52 (250)
349 PRK14269 phosphate ABC transpo 98.4 3.4E-07 7.3E-12 77.6 5.1 46 10-55 1-51 (246)
350 cd03229 ABC_Class3 This class 98.4 2.4E-07 5.3E-12 74.6 4.1 44 12-55 1-49 (178)
351 cd03269 ABC_putative_ATPase Th 98.4 2.2E-07 4.8E-12 76.8 3.9 44 12-55 1-49 (210)
352 TIGR03410 urea_trans_UrtE urea 98.4 2.6E-07 5.7E-12 77.4 4.3 44 12-55 1-49 (230)
353 cd03256 ABC_PhnC_transporter A 98.4 2.6E-07 5.6E-12 77.9 4.3 44 12-55 1-50 (241)
354 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.4 1.5E-06 3.2E-11 69.5 8.2 159 33-228 23-183 (221)
355 PRK11819 putative ABC transpor 98.4 3.1E-07 6.6E-12 86.9 5.2 47 9-55 4-56 (556)
356 PRK15112 antimicrobial peptide 98.4 3.4E-07 7.5E-12 78.6 5.0 46 10-55 3-62 (267)
357 PRK14270 phosphate ABC transpo 98.4 4.4E-07 9.5E-12 77.1 5.6 47 9-55 2-53 (251)
358 cd04168 TetM_like Tet(M)-like 98.4 9.1E-06 2E-10 68.5 13.5 21 35-55 2-22 (237)
359 COG4161 ArtP ABC-type arginine 98.4 5E-07 1.1E-11 70.5 5.3 59 10-68 1-66 (242)
360 TIGR01189 ccmA heme ABC export 98.4 2.6E-07 5.6E-12 75.7 4.0 44 12-55 1-49 (198)
361 PRK14262 phosphate ABC transpo 98.4 4.1E-07 8.8E-12 77.3 5.3 44 11-54 3-51 (250)
362 PRK14246 phosphate ABC transpo 98.4 3.3E-07 7.1E-12 78.3 4.7 48 8-55 7-59 (257)
363 PRK10416 signal recognition pa 98.4 4.3E-06 9.4E-11 73.4 11.8 38 32-69 114-153 (318)
364 PRK10619 histidine/lysine/argi 98.4 3.5E-07 7.7E-12 78.0 4.8 47 9-55 3-54 (257)
365 TIGR00484 EF-G translation elo 98.4 2E-06 4.3E-11 83.4 10.5 24 31-54 9-32 (689)
366 PRK14254 phosphate ABC transpo 98.4 5E-07 1.1E-11 78.3 5.7 48 8-55 36-88 (285)
367 TIGR01394 TypA_BipA GTP-bindin 98.4 4.3E-06 9.4E-11 79.3 12.4 185 34-248 3-208 (594)
368 PRK00007 elongation factor G; 98.4 2.1E-06 4.5E-11 83.2 10.5 24 31-54 9-32 (693)
369 TIGR03005 ectoine_ehuA ectoine 98.4 2.7E-07 5.9E-12 78.5 3.9 44 12-55 1-49 (252)
370 cd03225 ABC_cobalt_CbiO_domain 98.4 2.8E-07 6.1E-12 76.2 3.9 43 13-55 1-50 (211)
371 PRK10762 D-ribose transporter 98.4 3.6E-07 7.7E-12 85.4 5.0 46 10-55 3-53 (501)
372 cd03235 ABC_Metallic_Cations A 98.4 2.4E-07 5.2E-12 76.7 3.5 43 13-55 1-48 (213)
373 TIGR02211 LolD_lipo_ex lipopro 98.4 3.4E-07 7.4E-12 76.2 4.4 45 11-55 1-54 (221)
374 cd03231 ABC_CcmA_heme_exporter 98.4 3.7E-07 8E-12 75.0 4.5 44 12-55 1-49 (201)
375 PRK13641 cbiO cobalt transport 98.4 3.9E-07 8.5E-12 79.1 4.9 45 11-55 2-56 (287)
376 COG1118 CysA ABC-type sulfate/ 98.4 2.9E-07 6.3E-12 78.7 3.9 45 10-54 1-50 (345)
377 PRK11153 metN DL-methionine tr 98.4 3E-07 6.4E-12 81.8 4.1 45 11-55 1-54 (343)
378 PRK13631 cbiO cobalt transport 98.4 5.4E-07 1.2E-11 79.4 5.7 49 7-55 17-75 (320)
379 PRK14275 phosphate ABC transpo 98.4 5.1E-07 1.1E-11 78.3 5.5 48 7-54 35-87 (286)
380 PRK09700 D-allose transporter 98.4 3.7E-07 8.1E-12 85.5 5.0 46 10-55 4-54 (510)
381 PRK13547 hmuV hemin importer A 98.4 4.4E-07 9.6E-12 78.1 5.0 45 11-55 1-50 (272)
382 COG3840 ThiQ ABC-type thiamine 98.4 2.5E-07 5.5E-12 73.5 3.2 45 11-55 1-48 (231)
383 KOG1490 GTP-binding protein CR 98.4 5.4E-07 1.2E-11 81.3 5.6 141 30-185 166-310 (620)
384 PRK14249 phosphate ABC transpo 98.4 5.9E-07 1.3E-11 76.4 5.7 46 10-55 3-53 (251)
385 PRK11650 ugpC glycerol-3-phosp 98.4 3.5E-07 7.5E-12 81.7 4.4 45 11-55 3-53 (356)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 3.3E-07 7.2E-12 71.3 3.8 43 12-54 1-48 (144)
387 PRK11000 maltose/maltodextrin 98.4 3.8E-07 8.2E-12 81.9 4.6 45 11-55 3-52 (369)
388 PRK13635 cbiO cobalt transport 98.4 5.3E-07 1.1E-11 77.9 5.4 46 10-55 4-56 (279)
389 TIGR02314 ABC_MetN D-methionin 98.4 3.5E-07 7.6E-12 81.2 4.3 45 11-55 1-54 (343)
390 PRK13644 cbiO cobalt transport 98.4 4.2E-07 9.2E-12 78.3 4.8 45 11-55 1-51 (274)
391 PRK13646 cbiO cobalt transport 98.4 5E-07 1.1E-11 78.4 5.2 45 11-55 2-56 (286)
392 TIGR01978 sufC FeS assembly AT 98.4 4.1E-07 8.9E-12 76.8 4.6 44 12-55 1-49 (243)
393 PRK14252 phosphate ABC transpo 98.4 6.4E-07 1.4E-11 76.8 5.8 50 6-55 11-65 (265)
394 cd03264 ABC_drug_resistance_li 98.4 3.5E-07 7.5E-12 75.7 4.0 44 12-55 1-48 (211)
395 PRK13645 cbiO cobalt transport 98.4 4.9E-07 1.1E-11 78.5 5.1 47 9-55 4-60 (289)
396 PRK10938 putative molybdenum t 98.4 4.8E-07 1E-11 84.3 5.4 45 11-55 3-52 (490)
397 PRK12739 elongation factor G; 98.4 2.6E-06 5.7E-11 82.5 10.6 24 31-54 7-30 (691)
398 cd03369 ABCC_NFT1 Domain 2 of 98.3 9.7E-07 2.1E-11 72.8 6.4 47 9-55 4-57 (207)
399 TIGR03608 L_ocin_972_ABC putat 98.3 3.8E-07 8.2E-12 75.1 3.9 42 14-55 1-47 (206)
400 PRK13633 cobalt transporter AT 98.3 5.6E-07 1.2E-11 77.8 5.0 46 10-55 3-59 (280)
401 PRK14253 phosphate ABC transpo 98.3 7.4E-07 1.6E-11 75.6 5.6 45 11-55 3-52 (249)
402 PRK11607 potG putrescine trans 98.3 5.8E-07 1.3E-11 80.8 5.2 48 8-55 16-68 (377)
403 PRK15056 manganese/iron transp 98.3 4.8E-07 1E-11 77.9 4.5 45 11-55 6-56 (272)
404 PRK14974 cell division protein 98.3 5.6E-06 1.2E-10 73.1 11.3 37 32-68 140-178 (336)
405 COG4555 NatA ABC-type Na+ tran 98.3 2.7E-07 5.8E-12 74.5 2.6 44 11-54 1-50 (245)
406 PF08477 Miro: Miro-like prote 98.3 3.4E-07 7.3E-12 68.3 3.1 21 35-55 2-22 (119)
407 PRK13649 cbiO cobalt transport 98.3 5.2E-07 1.1E-11 78.0 4.7 45 11-55 2-56 (280)
408 cd01858 NGP_1 NGP-1. Autoanti 98.3 5.7E-07 1.2E-11 70.9 4.5 37 34-74 104-140 (157)
409 TIGR02324 CP_lyasePhnL phospho 98.3 5.6E-07 1.2E-11 75.1 4.7 45 11-55 1-57 (224)
410 TIGR03740 galliderm_ABC gallid 98.3 4.8E-07 1E-11 75.5 4.2 44 12-55 1-49 (223)
411 PRK13549 xylose transporter AT 98.3 7.1E-07 1.5E-11 83.5 5.8 46 10-55 4-54 (506)
412 PRK09580 sufC cysteine desulfu 98.3 9.8E-07 2.1E-11 74.8 6.1 45 11-55 1-50 (248)
413 cd03295 ABC_OpuCA_Osmoprotecti 98.3 4.9E-07 1.1E-11 76.4 4.2 44 12-55 1-50 (242)
414 PRK13647 cbiO cobalt transport 98.3 6.3E-07 1.4E-11 77.3 4.9 45 11-55 4-54 (274)
415 cd03250 ABCC_MRP_domain1 Domai 98.3 5.7E-07 1.2E-11 74.0 4.5 44 12-55 1-54 (204)
416 PRK11288 araG L-arabinose tran 98.3 5.7E-07 1.2E-11 84.0 5.0 47 9-55 2-53 (501)
417 PRK13652 cbiO cobalt transport 98.3 6.1E-07 1.3E-11 77.4 4.8 45 11-55 3-53 (277)
418 cd03215 ABC_Carb_Monos_II This 98.3 7.6E-07 1.6E-11 72.0 5.1 43 9-55 2-49 (182)
419 PRK15064 ABC transporter ATP-b 98.3 5.8E-07 1.2E-11 84.6 5.0 45 11-55 1-50 (530)
420 smart00053 DYNc Dynamin, GTPas 98.3 6.2E-06 1.3E-10 69.5 10.6 27 29-55 23-49 (240)
421 PRK14240 phosphate transporter 98.3 8.4E-07 1.8E-11 75.3 5.5 44 11-54 3-51 (250)
422 cd03230 ABC_DR_subfamily_A Thi 98.3 5.5E-07 1.2E-11 72.2 4.1 44 12-55 1-49 (173)
423 cd03292 ABC_FtsE_transporter F 98.3 5.3E-07 1.2E-11 74.7 4.1 44 12-55 1-50 (214)
424 cd01850 CDC_Septin CDC/Septin. 98.3 1.9E-06 4.1E-11 74.3 7.6 21 34-54 6-26 (276)
425 PRK10636 putative ABC transpor 98.3 7.9E-07 1.7E-11 85.4 5.8 48 8-55 309-361 (638)
426 PRK14272 phosphate ABC transpo 98.3 9.4E-07 2E-11 75.1 5.7 46 10-55 3-53 (252)
427 PRK13637 cbiO cobalt transport 98.3 6.4E-07 1.4E-11 77.7 4.7 45 11-55 2-56 (287)
428 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.3 1.4E-06 3E-11 72.7 6.6 21 35-55 4-24 (222)
429 cd03248 ABCC_TAP TAP, the Tran 98.3 1.3E-06 2.8E-11 73.0 6.4 50 6-55 6-63 (226)
430 cd03228 ABCC_MRP_Like The MRP 98.3 7.8E-07 1.7E-11 71.2 4.8 44 12-55 1-51 (171)
431 TIGR03873 F420-0_ABC_ATP propo 98.3 5.7E-07 1.2E-11 76.7 4.2 44 12-55 2-50 (256)
432 PLN03126 Elongation factor Tu; 98.3 4.3E-06 9.3E-11 77.4 10.3 21 34-54 83-103 (478)
433 TIGR00991 3a0901s02IAP34 GTP-b 98.3 1.9E-06 4.2E-11 74.7 7.4 130 31-172 37-169 (313)
434 PRK14258 phosphate ABC transpo 98.3 9.1E-07 2E-11 75.7 5.5 47 9-55 5-56 (261)
435 cd01900 YchF YchF subfamily. 98.3 1.2E-06 2.6E-11 75.2 6.2 38 35-77 1-38 (274)
436 PRK11147 ABC transporter ATPas 98.3 5.9E-07 1.3E-11 86.3 4.7 45 11-55 3-52 (635)
437 cd03247 ABCC_cytochrome_bd The 98.3 6.7E-07 1.5E-11 72.0 4.4 44 12-55 1-51 (178)
438 TIGR03258 PhnT 2-aminoethylpho 98.3 6E-07 1.3E-11 80.3 4.4 46 10-55 4-54 (362)
439 COG3596 Predicted GTPase [Gene 98.3 2.6E-06 5.7E-11 71.8 7.9 123 33-171 39-163 (296)
440 PRK15064 ABC transporter ATP-b 98.3 1E-06 2.3E-11 82.9 6.2 47 9-55 317-368 (530)
441 cd03254 ABCC_Glucan_exporter_l 98.3 9.2E-07 2E-11 74.0 5.3 45 11-55 2-52 (229)
442 cd03245 ABCC_bacteriocin_expor 98.3 1E-06 2.3E-11 73.2 5.5 45 11-55 2-53 (220)
443 PRK13634 cbiO cobalt transport 98.3 8.1E-07 1.8E-11 77.2 5.0 45 11-55 2-56 (290)
444 PRK14264 phosphate ABC transpo 98.3 1.2E-06 2.6E-11 76.7 6.1 49 7-55 41-94 (305)
445 cd04170 EF-G_bact Elongation f 98.3 4.3E-06 9.4E-11 71.8 9.4 20 35-54 2-21 (268)
446 PRK13640 cbiO cobalt transport 98.3 1E-06 2.2E-11 76.3 5.5 47 9-55 3-56 (282)
447 PRK13541 cytochrome c biogenes 98.3 7.5E-07 1.6E-11 72.8 4.5 44 11-55 1-49 (195)
448 cd03214 ABC_Iron-Siderophores_ 98.3 6.5E-07 1.4E-11 72.3 4.0 43 13-55 1-48 (180)
449 PRK14260 phosphate ABC transpo 98.3 1.1E-06 2.3E-11 75.2 5.5 46 10-55 6-56 (259)
450 PLN03073 ABC transporter F fam 98.3 1.7E-06 3.6E-11 83.9 7.5 61 7-67 173-243 (718)
451 TIGR03719 ABC_ABC_ChvD ATP-bin 98.3 8.4E-07 1.8E-11 83.9 5.4 47 9-55 2-54 (552)
452 cd03213 ABCG_EPDR ABCG transpo 98.3 1E-06 2.2E-11 72.0 5.2 46 10-55 2-58 (194)
453 TIGR02769 nickel_nikE nickel i 98.3 8.7E-07 1.9E-11 76.0 4.9 45 11-55 2-60 (265)
454 PRK14263 phosphate ABC transpo 98.3 1.2E-06 2.5E-11 75.1 5.6 50 6-55 3-57 (261)
455 cd03251 ABCC_MsbA MsbA is an e 98.3 8.9E-07 1.9E-11 74.4 4.8 44 12-55 1-51 (234)
456 PRK13639 cbiO cobalt transport 98.3 7.7E-07 1.7E-11 76.7 4.6 45 11-55 1-51 (275)
457 cd03217 ABC_FeS_Assembly ABC-t 98.3 8.8E-07 1.9E-11 72.7 4.7 44 12-55 1-49 (200)
458 PRK13651 cobalt transporter AT 98.3 9.6E-07 2.1E-11 77.3 5.2 45 11-55 2-56 (305)
459 COG0532 InfB Translation initi 98.3 2.4E-06 5.2E-11 78.0 7.8 160 30-226 3-166 (509)
460 PF00448 SRP54: SRP54-type pro 98.3 9.3E-06 2E-10 66.4 10.7 91 33-135 2-98 (196)
461 PRK13643 cbiO cobalt transport 98.3 8.8E-07 1.9E-11 76.9 4.9 45 11-55 1-55 (288)
462 PRK10418 nikD nickel transport 98.3 1.1E-06 2.3E-11 74.9 5.3 46 9-55 2-52 (254)
463 PRK10419 nikE nickel transport 98.3 9.5E-07 2.1E-11 75.9 5.0 45 11-55 3-61 (268)
464 cd03246 ABCC_Protease_Secretio 98.3 9E-07 2E-11 70.9 4.5 44 12-55 1-51 (173)
465 COG1137 YhbG ABC-type (unclass 98.3 1.2E-07 2.6E-12 76.3 -0.5 53 10-70 3-60 (243)
466 PRK13650 cbiO cobalt transport 98.3 1.1E-06 2.4E-11 76.0 5.1 46 10-55 3-56 (279)
467 cd04178 Nucleostemin_like Nucl 98.3 9.5E-07 2.1E-11 70.8 4.3 38 34-75 119-156 (172)
468 TIGR00968 3a0106s01 sulfate AB 98.3 8.7E-07 1.9E-11 74.7 4.2 44 12-55 1-49 (237)
469 PRK11147 ABC transporter ATPas 98.3 1.2E-06 2.5E-11 84.3 5.6 48 8-55 316-368 (635)
470 cd03232 ABC_PDR_domain2 The pl 98.3 1.4E-06 2.9E-11 71.1 5.2 45 10-54 2-55 (192)
471 PRK10938 putative molybdenum t 98.3 1.2E-06 2.6E-11 81.6 5.5 48 8-55 257-309 (490)
472 PRK15093 antimicrobial peptide 98.3 1.3E-06 2.7E-11 77.4 5.3 46 10-55 2-56 (330)
473 PRK13642 cbiO cobalt transport 98.3 1.3E-06 2.9E-11 75.4 5.2 46 10-55 3-56 (277)
474 cd03222 ABC_RNaseL_inhibitor T 98.3 8.4E-07 1.8E-11 71.4 3.7 40 15-54 4-47 (177)
475 cd03300 ABC_PotA_N PotA is an 98.2 1.1E-06 2.4E-11 73.8 4.6 44 12-55 1-49 (232)
476 PRK11819 putative ABC transpor 98.2 1.2E-06 2.7E-11 82.9 5.3 47 9-55 322-373 (556)
477 cd03223 ABCD_peroxisomal_ALDP 98.2 1.2E-06 2.6E-11 69.8 4.5 44 12-55 1-50 (166)
478 PRK11889 flhF flagellar biosyn 98.2 2.5E-05 5.5E-10 69.8 12.9 88 33-133 242-333 (436)
479 COG1122 CbiO ABC-type cobalt t 98.2 1.5E-06 3.3E-11 72.9 5.0 45 10-54 2-52 (235)
480 PRK14266 phosphate ABC transpo 98.2 1.6E-06 3.6E-11 73.5 5.3 44 11-54 3-51 (250)
481 PRK06731 flhF flagellar biosyn 98.2 4.3E-05 9.3E-10 65.5 13.8 114 8-133 50-167 (270)
482 COG0488 Uup ATPase components 98.2 2.8E-06 6.1E-11 79.2 7.0 60 10-69 2-76 (530)
483 cd03116 MobB Molybdenum is an 98.2 4.7E-06 1E-10 65.9 7.3 38 33-70 2-41 (159)
484 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1.7E-06 3.6E-11 81.9 5.7 47 9-55 320-371 (552)
485 cd03253 ABCC_ATM1_transporter 98.2 1.5E-06 3.2E-11 73.1 4.8 44 12-55 1-50 (236)
486 COG3845 ABC-type uncharacteriz 98.2 2E-06 4.3E-11 77.8 5.7 46 9-54 2-52 (501)
487 cd04169 RF3 RF3 subfamily. Pe 98.2 3.1E-05 6.7E-10 66.5 12.8 23 32-54 2-24 (267)
488 cd03288 ABCC_SUR2 The SUR doma 98.2 1.9E-06 4.1E-11 73.5 5.3 47 9-55 17-70 (257)
489 PRK14257 phosphate ABC transpo 98.2 2.1E-06 4.5E-11 76.0 5.7 49 7-55 76-131 (329)
490 PRK14493 putative bifunctional 98.2 6.5E-06 1.4E-10 70.8 8.5 92 33-132 2-99 (274)
491 COG1161 Predicted GTPases [Gen 98.2 1.3E-06 2.8E-11 76.9 4.3 56 34-100 134-189 (322)
492 PRK11022 dppD dipeptide transp 98.2 1.8E-06 3.9E-11 76.2 5.2 45 11-55 3-56 (326)
493 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.2 1.6E-06 3.5E-11 73.0 4.7 44 12-55 1-52 (238)
494 PRK10261 glutathione transport 98.2 1.6E-06 3.5E-11 83.1 5.2 51 5-55 6-65 (623)
495 COG1100 GTPase SAR1 and relate 98.2 3.7E-06 8E-11 69.6 6.7 23 33-55 6-28 (219)
496 cd03244 ABCC_MRP_domain2 Domai 98.2 2.3E-06 5E-11 71.2 5.4 44 12-55 3-53 (221)
497 cd03252 ABCC_Hemolysin The ABC 98.2 1.7E-06 3.7E-11 72.8 4.6 44 12-55 1-51 (237)
498 PRK10070 glycine betaine trans 98.2 1.4E-06 2.9E-11 78.9 4.2 46 10-55 3-77 (400)
499 PRK09601 GTP-binding protein Y 98.2 4.8E-06 1E-10 74.0 7.5 38 34-76 4-41 (364)
500 PRK10771 thiQ thiamine transpo 98.2 1.9E-06 4.1E-11 72.3 4.8 43 11-55 1-48 (232)
No 1
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-40 Score=277.52 Aligned_cols=232 Identities=50% Similarity=0.813 Sum_probs=205.2
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 104 (263)
+...+.++|+.+|+||+|||||||+|.|+...+|+|+||+.|+||+..+++..+......+.+++++++|.|||+||+.+
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 44456799999999999999999999999999999999999999987788888877654566678899999999999999
Q ss_pred hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe--------------------------
Q 024744 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT-------------------------- 158 (263)
Q Consensus 105 ~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~-------------------------- 158 (263)
+....++..+.++..++|+|++||+|+++|.++++++|+++.+.+-++++++++
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 999999999999889999999999999999999999999999998889998876
Q ss_pred ----eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCC
Q 024744 159 ----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQ 234 (263)
Q Consensus 159 ----~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~ 234 (263)
|.|++||+|+++.+ .+..++++++.+|..|+++++.++++++..++.+-|++.+....+...+. +..+.+
T Consensus 210 iA~AD~II~NKtDli~~e----~~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ss~nl~~k~~--~~~~~~ 283 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEE----EVKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSESSINLDKKLQ--HSGGTQ 283 (391)
T ss_pred HhhhheeeeccccccCHH----HHHHHHHHHHHhhhHHHhhhhhhccccHHHhcccccccccccchhhhhhc--cCCCCC
Confidence 88999999999986 67999999999999999999999999999999999998774443433322 222345
Q ss_pred CCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 235 NLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 235 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
.+|++++.++.+..+.-.+-+.+++||+
T Consensus 284 ~h~d~~i~ti~~~~~~~~~~E~~n~wl~ 311 (391)
T KOG2743|consen 284 IHLDQSIGTITFEVPGLAKEEHLNMWLQ 311 (391)
T ss_pred cccCCCcceEEEEeCCccCHHHHHHHHH
Confidence 5568899999999999999999999996
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=282.21 Aligned_cols=218 Identities=41% Similarity=0.719 Sum_probs=183.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+|+++|+||+|||||||||.|+.+.+|+|+||+.|++|+ +++|. ..+...+ .++.+++|||+||+.++++.+.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~ 74 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA 74 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence 589999999999999999999999889999999999998 99994 5555433 3589999999999999999999
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe-------------------------eEEEEec
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT-------------------------DVVILNK 165 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~-------------------------~iivlNK 165 (263)
+.++..+...+|+|+||++|+++|.++.+.+...+.+...+.++.+++ ++|++||
T Consensus 75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK 154 (323)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence 999998567899999999999999999888776667777778887775 9999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc-CCCCCCCCC-CEEE
Q 024744 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY-KSSQNLHDN-NVRT 243 (263)
Q Consensus 166 ~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~-~~~~~~~~~-~i~~ 243 (263)
+|+++++ .++.+++.++++||.|+++.+.++..+...++....++.... ..+...+.. .+|+|.|++ ++++
T Consensus 155 ~Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~h~h~~~~~~i~s 227 (323)
T COG0523 155 TDLVDAE----ELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDRD---VGRTSPLFSDHQHDHEHDEGGISS 227 (323)
T ss_pred ccCCCHH----HHHHHHHHHHHhCCCCeEEEccccCCCHHHhhcccccccccc---ccccCccccccCCCchhcccCceE
Confidence 9999986 478999999999999999999999999989998888775541 111111111 123333333 6999
Q ss_pred EEEEcCCCCCHHHHHhhhc
Q 024744 244 LSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 244 ~~~~~~~~~~~~~l~~~l~ 262 (263)
+++.+++|+++++|.+||.
T Consensus 228 ~~~~~~~p~~~~~l~~~l~ 246 (323)
T COG0523 228 FSVRADRPFDPERLEAFLD 246 (323)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 9999999999999999985
No 3
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=100.00 E-value=1.9e-36 Score=264.13 Aligned_cols=215 Identities=31% Similarity=0.539 Sum_probs=172.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
++|+++|+||+|||||||||+|+...++.+++|+.|++|+ .++|..++.... .+++++.+||+||+.++++...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~~~ 76 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA 76 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHHHH
Confidence 5799999999999999999999988779999999999998 899988876432 2578999999999999999999
Q ss_pred HHHHHHhc----cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEE
Q 024744 111 LEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVI 162 (263)
Q Consensus 111 l~~~~~~~----~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iiv 162 (263)
+.+++.+. ..+|+|+||++|+++|.++.+.++.++.+...+.++.+++ ++|+
T Consensus 77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv 156 (318)
T PRK11537 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_pred HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence 99997532 2699999999999999998877654555666666666554 9999
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEE
Q 024744 163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVR 242 (263)
Q Consensus 163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~ 242 (263)
+||+|++++. +++++.++.+||.++++.+.++.++...++.+.++.-..... ...+. .+++++|++++.
T Consensus 157 lnK~Dl~~~~------~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~i~ 225 (318)
T PRK11537 157 LTKTDVAGEA------EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFMLEENVV----STKPR-FHFIADKQNDIS 225 (318)
T ss_pred EeccccCCHH------HHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcCcccccc----ccCcc-cccCCcccCceE
Confidence 9999999752 789999999999999999999999988888665433111100 00111 111234556799
Q ss_pred EEEEEcCCCCCHHHHHhhhc
Q 024744 243 TLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~ 262 (263)
++++++++|+++++|++||+
T Consensus 226 s~~~~~~~p~~~~~l~~~L~ 245 (318)
T PRK11537 226 SIVVELDYPVDISEVSRVME 245 (318)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 99999999999999999985
No 4
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=100.00 E-value=9.5e-35 Score=255.99 Aligned_cols=225 Identities=32% Similarity=0.557 Sum_probs=169.3
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCC-CcceeeeeeecCcceEeecchhHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-GALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~-~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.++|+++|+||+|||||||+|+++...++.+++|+.|++|+ .++|..++..... .....+++++.+||+||+.++++.
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 35799999999999999999999988779999999999998 8999888764321 011235899999999999999999
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCe---------------------------------
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDS--------------------------------- 155 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~--------------------------------- 155 (263)
..+.+++.+...+|+|+||++|+++|.++.+.+. .+.+...+.++.
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLD 159 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccc
Confidence 9999998655789999999999999999887652 111111111100
Q ss_pred -------------EEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC-CCeEEEeecCCCChhhhhccccCCcchhhhh
Q 024744 156 -------------IITDVVILNKVDLVSPERSGDSLDELEKEIHEINS-LAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 221 (263)
Q Consensus 156 -------------~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p-~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l 221 (263)
..+++|++||+|+++++ .++.+++.|+.+|| .++++.+.++.++...++.+...........
T Consensus 160 ~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~----~l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~~~~~~~~~ 235 (341)
T TIGR02475 160 HETPLEELFEDQLACADLVILNKADLLDAA----GLARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAAAEDDLDNR 235 (341)
T ss_pred ccchHHHHHHHHHHhCCEEEEeccccCCHH----HHHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCcChhhhhcC
Confidence 02399999999999875 57899999999887 4699999999999999887644322211100
Q ss_pred hhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhcC
Q 024744 222 EGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS 263 (263)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~ 263 (263)
..+ +..+.+++++++++.++++++++|+++++|++||++
T Consensus 236 ~~~---~~~~~~~~~~~~~i~s~~~~~~~p~~~~~~~~~L~~ 274 (341)
T TIGR02475 236 PSH---HDFEGGEEHDHDEFDSVVVDLGEVADPAALRQRLER 274 (341)
T ss_pred ccc---ccccCCCCCCCCCEEEEEEEcCCCCCHHHHHHHHHh
Confidence 000 000111233446799999999999999999999963
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.96 E-value=5.5e-29 Score=201.12 Aligned_cols=151 Identities=50% Similarity=0.885 Sum_probs=117.3
Q ss_pred EEEEEEccCCCcHHHHHHHHH-ccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~-~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
|+++|+||+||||||||++++ ...++.+++++.||+|. .++|...+...+ ..+.++.+||+||+.+.++...+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~~-----~~v~~l~~gcicc~~~~~~~~~l 74 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQEDG-----VPVVELNNGCICCTLRDDLVEAL 74 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTTT------EEEEECTTTESS-TTS-HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhcccc-----eEEEEecCCCcccccHHHHHHHH
Confidence 789999999999999999999 56779999999999998 889998887642 24789999999999999999999
Q ss_pred HHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEEEecC
Q 024744 112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVILNKV 166 (263)
Q Consensus 112 ~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iivlNK~ 166 (263)
.++.... ..+|+|+||++|+++|.++. +. +..+...+.+..+++ ++|++||+
T Consensus 75 ~~l~~~~~~~~d~IiIE~sG~a~p~~l~--~~-~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~ 151 (178)
T PF02492_consen 75 RRLLREYEERPDRIIIETSGLADPAPLI--LQ-DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKI 151 (178)
T ss_dssp HHHCCCCHGC-SEEEEEEECSSGGGGHH--HH-SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-G
T ss_pred HHHHHhcCCCcCEEEECCccccccchhh--hc-cccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEecc
Confidence 9998643 37999999999999999982 11 333333344444332 99999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCeEE
Q 024744 167 DLVSPERSGDSLDELEKEIHEINSLAHVI 195 (263)
Q Consensus 167 Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~ 195 (263)
|+++.++ .++++++.++++||.++|+
T Consensus 152 D~~~~~~---~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 152 DLVSDEQ---KIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred ccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence 9998752 3589999999999999876
No 6
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.90 E-value=4e-23 Score=163.59 Aligned_cols=130 Identities=52% Similarity=0.929 Sum_probs=102.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
|+++++|++|||||||++.+++...+.+++++.+++|+ ..+|...+.... ..++++.+||+||+.+.++...+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence 68899999999999999999988778899999999997 788877766422 257889999999999999999986
Q ss_pred HHHH----hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEEEe
Q 024744 113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVILN 164 (263)
Q Consensus 113 ~~~~----~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iivlN 164 (263)
+++. ...++|+|++|++|+++|.+..+.++.+..+...+.++.++. ++||+|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln 154 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN 154 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence 5543 246899999999999999988765443444444444444332 888888
Q ss_pred cCCC
Q 024744 165 KVDL 168 (263)
Q Consensus 165 K~Dl 168 (263)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 8885
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=3.6e-23 Score=174.23 Aligned_cols=197 Identities=21% Similarity=0.340 Sum_probs=139.1
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.++..+|+|+|+||+|||||+|+|+ |.|++++++.++||+....++.... +.+.+ ++|+ ||. +..+..+.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QTTR~~I~GI~t~~-~~QiI--fvDT-PGi--h~pk~~l~ 72 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQTTRNRIRGIVTTD-NAQII--FVDT-PGI--HKPKHALG 72 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcchhhhheeEEEEcC-CceEE--EEeC-CCC--CCcchHHH
Confidence 4677899999999999999999999 9999999999999988777777654 34444 7888 665 55677788
Q ss_pred HHHHHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 109 QALEQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 109 ~~l~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
+.|.+.+... ..+|+|++-+.+.....+..+.. -+.+.. .. .+.++++||+|..+++. .+..+.+.++.
T Consensus 73 ~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i--l~~lk~-~~----~pvil~iNKID~~~~~~---~l~~~~~~~~~ 142 (298)
T COG1159 73 ELMNKAARSALKDVDLILFVVDADEGWGPGDEFI--LEQLKK-TK----TPVILVVNKIDKVKPKT---VLLKLIAFLKK 142 (298)
T ss_pred HHHHHHHHHHhccCcEEEEEEeccccCCccHHHH--HHHHhh-cC----CCeEEEEEccccCCcHH---HHHHHHHHHHh
Confidence 8888777544 68999999554433333322221 122332 11 34999999999998752 12344444433
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
.. ++.+++++||.+|.|++.|.+.+.. +++||.++.+|++.+++.. .+-+++++.+++
T Consensus 143 ~~-------------~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a----EiiREk~~~~l~ 205 (298)
T COG1159 143 LL-------------PFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA----EIIREKLLLLLR 205 (298)
T ss_pred hC-------------CcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH----HHHHHHHHHhcc
Confidence 32 5678999999999999999988874 5567777777776666544 344556665554
No 8
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.88 E-value=1.4e-22 Score=172.83 Aligned_cols=179 Identities=19% Similarity=0.212 Sum_probs=131.3
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 103 (263)
..+...+..++.|+|+||||||||++++++. ....+++++.++.++ .. |...+...+ ...+.+++||+||..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~~g-----~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRATG-----TPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHhcC-----CcEEEecCCCCCcCc
Confidence 3444556779999999999999999999876 345689999999987 54 766665432 246788899999999
Q ss_pred chhHHHHHHHHHHhccCCcEEEEcccCC-CCchhHH--H---Hhh--cccccccceeeCeE--EeeEEEEecCCCCCCCC
Q 024744 104 KHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLA--S---VLW--LDDQLESAVRLDSI--ITDVVILNKVDLVSPER 173 (263)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~d~ilie~~G~-~~p~~~~--~---~~~--~~~~l~~~~~~~~~--i~~iivlNK~Dl~~~~~ 173 (263)
..++..++..+.. ...|+++||++|. ++|..+. + +.. ..+......+++.+ .++++|+||+|+++..
T Consensus 170 a~mv~~Al~~L~~--~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~- 246 (290)
T PRK10463 170 AQMIADAAPRLPL--DDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYL- 246 (290)
T ss_pred HHHHHHHHHHHhh--cCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCccc-
Confidence 8888899888854 5779999999995 6776421 1 000 00000111112111 3499999999998642
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 174 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 174 ~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+++.+.+.++.+||.+ +++.+||++|+|+++|.+||.+
T Consensus 247 -~~dle~~~~~lr~lnp~a-------------~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 247 -NFDVEKCIACAREVNPEI-------------EIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred -HHHHHHHHHHHHhhCCCC-------------cEEEEECCCCCCHHHHHHHHHH
Confidence 235778888899999876 5889999999999999999865
No 9
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.86 E-value=1.5e-21 Score=161.46 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=121.0
Q ss_pred cccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (263)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~ 102 (263)
+..+....+|+++++||+|||||||+++++.. ..+.+++++.++++. +.|...+...+ .+++.+.+||+||.
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~~-----~~~~~l~~gcic~~ 86 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKYG-----APAIQINTGKECHL 86 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHcC-----CcEEEEcCCCcccC
Confidence 34456668999999999999999999999876 335799999999874 45665555432 24678889999996
Q ss_pred cchhHHHHHHHHHHhccCCcEEEEcccC-CCCchhHHHHh-----hccc-----ccccceeeCeEEeeEEEEecCCCCCC
Q 024744 103 VKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVL-----WLDD-----QLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G-~~~p~~~~~~~-----~~~~-----~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
...++...+..+.. ..+|+|++|++| +.+|..+.... ..+. ..... ......++++++||+|+.+.
T Consensus 87 ~~~~~~~~l~~~~~--~~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~~~-~~~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 87 DAHMVAHALEDLPL--DDIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKPLKY-PGMFKEADLIVINKADLAEA 163 (207)
T ss_pred ChHHHHHHHHHhcc--CCCCEEEEecCCCcCCCcccccccCeEEEEEecCcccchhhhh-HhHHhhCCEEEEEHHHcccc
Confidence 65555455544432 368999999999 55554321000 0000 00000 00001247999999999864
Q ss_pred CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. .....+.+.+++++|.+ +++.+||++|.|++++.+++.+
T Consensus 164 ~~--~~~~~~~~~l~~~~~~~-------------~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 164 VG--FDVEKMKADAKKINPEA-------------EIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred ch--hhHHHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHH
Confidence 31 13466777777777654 5888999999999999998865
No 10
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.78 E-value=2.3e-18 Score=141.22 Aligned_cols=177 Identities=16% Similarity=0.277 Sum_probs=113.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeee-cCcceEeecchhHH---
Q 024744 34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKHSLV--- 108 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~~~~~~~~~~--- 108 (263)
.++|+|++|||||||++++++. .+..+++++.+++++ . .+...+.... ...-...+.+ .+||.||..+.++.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT-Q-EDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMNL 79 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC-h-hHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHHH
Confidence 5889999999999999999876 345578899999876 2 2333332211 0000123332 58999999988874
Q ss_pred HHHHHHHHhccCCcEEEEcccCC--CCchhH--HHH--hhccc----ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744 109 QALEQLVQRKERLDHILLETTGL--ANPAPL--ASV--LWLDD----QLESAVRLDSIITDVVILNKVDLVSPERSGDSL 178 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~--~~p~~~--~~~--~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~ 178 (263)
..+.++..+..++|+++||++|. ..+... .+. ...+. .........-..+|++++||+|+.+.. ...+
T Consensus 80 ~~L~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~--~~~~ 157 (199)
T TIGR00101 80 EAVAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMV--GADL 157 (199)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccc--cccH
Confidence 44555544335799999999993 222210 000 00010 000000001113489999999998632 1246
Q ss_pred HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.+.+.++.+||.+ +++.+||++|+|++++.+++.++
T Consensus 158 ~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 158 GVMERDAKKMRGEK-------------PFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHhh
Confidence 88889999988866 57889999999999999998754
No 11
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.77 E-value=2e-18 Score=137.27 Aligned_cols=175 Identities=22% Similarity=0.295 Sum_probs=121.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+-.+.+.|++|||||||+.++++. ....++++|.+|.-+ ..|...+... .+. ..+....|-.|+.........
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~-~g~---~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL-PGE---PIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC-CCC---eeEEeccCCccCCcHHHHHHH
Confidence 458899999999999999999876 346899999999875 2344444431 122 233333443446555666778
Q ss_pred HHHHHHhccCCcEEEEcccC-CCCchhH--HH---Hhhccc--cccccee-eCeE-EeeEEEEecCCCCCCCCCcchHHH
Q 024744 111 LEQLVQRKERLDHILLETTG-LANPAPL--AS---VLWLDD--QLESAVR-LDSI-ITDVVILNKVDLVSPERSGDSLDE 180 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G-~~~p~~~--~~---~~~~~~--~l~~~~~-~~~~-i~~iivlNK~Dl~~~~~~~~~~~~ 180 (263)
++++..+....|++++|..| ++.|... .+ ++.++- .-....+ .+.+ .+|++|+||+|+++.- +..++.
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v--~~dlev 164 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYV--GADLEV 164 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHh--CccHHH
Confidence 88887655558999999999 7777643 11 111110 0011112 2222 3599999999999875 347899
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.+..+++||.+ +++.+|+++|+|++++.+|+..
T Consensus 165 m~~da~~~np~~-------------~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 165 MARDAKEVNPEA-------------PIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred HHHHHHHhCCCC-------------CEEEEeCCCCcCHHHHHHHHHh
Confidence 999999999987 4778899999999999998864
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=154.46 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=109.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.|+|+|+|+||+|||||+|+|+ +++.+++++.+|.|++.........+.. ..++|+ +| +--...+.+...+
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGvTRDr~y~~~~~~~~~---f~lIDT-gG-l~~~~~~~l~~~i 73 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGVTRDRIYGDAEWLGRE---FILIDT-GG-LDDGDEDELQELI 73 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCCccCCccceeEEcCce---EEEEEC-CC-CCcCCchHHHHHH
Confidence 3899999999999999999999 9999999999999887665555543322 135666 44 3222234566666
Q ss_pred HHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.+..... ..+|+||+-++|-.-..+..+ .+...++ ..-+|.++|+||+|..+.+ .....
T Consensus 74 ~~Qa~~Ai~eADvilfvVD~~~Git~~D~------~ia~~Lr-~~~kpviLvvNK~D~~~~e-------~~~~e------ 133 (444)
T COG1160 74 REQALIAIEEADVILFVVDGREGITPADE------EIAKILR-RSKKPVILVVNKIDNLKAE-------ELAYE------ 133 (444)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH------HHHHHHH-hcCCCEEEEEEcccCchhh-------hhHHH------
Confidence 6655433 689999996666443333221 1222222 2225699999999987443 11111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
++.+++.++++|||.+|.|+++|.+.+....
T Consensus 134 --------fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 134 --------FYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred --------HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 2334788999999999999999999887764
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=3.7e-19 Score=157.77 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=117.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH-----
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL----- 107 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~----- 107 (263)
.-++|+|.||+|||||+|+|+ |...+++++.+|+|++.....+... +.. ..++|+++ -..+...
T Consensus 179 ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGTTRD~I~~~~e~~--~~~-~~liDTAG----iRrk~ki~e~~E 247 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGTTRDSIDIEFERD--GRK-YVLIDTAG----IRRKGKITESVE 247 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCccccceeeeEEEC--CeE-EEEEECCC----CCcccccccceE
Confidence 358899999999999999999 7788999999999875433333322 111 24566633 1111111
Q ss_pred ----HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744 108 ----VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK 183 (263)
Q Consensus 108 ----~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~ 183 (263)
...++.+ ..+|.+++-.++.....+. +..+... ..+.-.+.+||+||||+++.. ...++.+++
T Consensus 248 ~~Sv~rt~~aI----~~a~vvllviDa~~~~~~q------D~~ia~~-i~~~g~~~vIvvNKWDl~~~~--~~~~~~~k~ 314 (444)
T COG1160 248 KYSVARTLKAI----ERADVVLLVIDATEGISEQ------DLRIAGL-IEEAGRGIVIVVNKWDLVEED--EATMEEFKK 314 (444)
T ss_pred EEeehhhHhHH----hhcCEEEEEEECCCCchHH------HHHHHHH-HHHcCCCeEEEEEccccCCch--hhHHHHHHH
Confidence 1222222 4678888833332222221 1111111 111114499999999999864 236788888
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
.|+...|.. ++++++++||.+|.++..+.+.+..-. -++.+.++++.|++||+
T Consensus 315 ~i~~~l~~l----------~~a~i~~iSA~~~~~i~~l~~~i~~~~----------------~~~~~ri~Ts~LN~~l~ 367 (444)
T COG1160 315 KLRRKLPFL----------DFAPIVFISALTGQGLDKLFEAIKEIY----------------ECATRRISTSLLNRVLE 367 (444)
T ss_pred HHHHHhccc----------cCCeEEEEEecCCCChHHHHHHHHHHH----------------HHhccccCHHHHHHHHH
Confidence 998877765 788999999999999999988765421 13467788888888876
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.73 E-value=8.2e-18 Score=131.77 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=99.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+++|.||+|||||+|+|+ |.+ ..+.|.+|+|+....+.+...+ . -..++|+ ||...-... ...+.+..
T Consensus 2 ~ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~~~~--~-~~~lvDl-PG~ysl~~~-s~ee~v~~ 71 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFKLGD--Q-QVELVDL-PGIYSLSSK-SEEERVAR 71 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEEETT--E-EEEEEE-----SSSSSS-SHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEEecC--c-eEEEEEC-CCcccCCCC-CcHHHHHH
Confidence 37899999999999999999 777 5679999998877666555432 1 1357898 664211111 11222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
-.....++|.++. +.|+..+...+++..++.+. . +|.++++||+|.+.......+.+.+.+.+. .
T Consensus 72 ~~l~~~~~D~ii~----VvDa~~l~r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-----~- 136 (156)
T PF02421_consen 72 DYLLSEKPDLIIV----VVDATNLERNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEIDAEKLSERLG-----V- 136 (156)
T ss_dssp HHHHHTSSSEEEE----EEEGGGHHHHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-HHHHHHHHT-----S-
T ss_pred HHHhhcCCCEEEE----ECCCCCHHHHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEECHHHHHHHhC-----C-
Confidence 2222468999999 77776655443333333322 2 459999999999877655445566666652 2
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l 225 (263)
+++++||.+|+|+++|.+.|
T Consensus 137 ------------pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 137 ------------PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------------EEEEBTTTTBTHHHHHHHH
T ss_pred ------------CEEEEEeCCCcCHHHHHhhC
Confidence 48899999999999998754
No 15
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.70 E-value=3.2e-17 Score=136.51 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=98.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc--CCCCcceeeeeeecCcceEe
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE--GEGGALVEEWVELANGCICC 101 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~--~~~~~~~~~~~~l~~g~~~~ 101 (263)
+..+++|+|+||||||||+++|... ..|.+++|+.-||..... + |+..... ...++++..+-.- |. ..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atR--G~-lG 104 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATR--GS-LG 104 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----SS-HH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcC--CC-CC
Confidence 3468999999999999999999765 459999999999864221 1 1111111 1223333222111 00 00
Q ss_pred ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-HH---h--hc----ccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLA-SV---L--WL----DDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-~~---~--~~----~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
.+.....+.+ .++ ....+|+|||||+|+...+-.. ++ . .+ .+.++.....-..++|++|+||.|+...
T Consensus 105 Gls~~t~~~v-~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA 182 (266)
T PF03308_consen 105 GLSRATRDAV-RLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGA 182 (266)
T ss_dssp HHHHHHHHHH-HHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHH
T ss_pred CccHhHHHHH-HHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHH
Confidence 1111122222 223 2468999999999998866432 11 0 01 1112211111122459999999996554
Q ss_pred CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744 172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY 230 (263)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~ 230 (263)
+ ....+++..+.-..+. ...|..+++.+||.+|+|+++|++.+.+|..
T Consensus 183 ~---~~~~~l~~~l~l~~~~--------~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 183 D---RTVRDLRSMLHLLRER--------EDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp H---HHHHHHHHHHHHCSTS--------CTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhhcccc--------ccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3 3455666666544331 1224457889999999999999999987653
No 16
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=134.54 Aligned_cols=185 Identities=22% Similarity=0.297 Sum_probs=110.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-C-CCCcceeeeeeecCcceEee
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-G-EGGALVEEWVELANGCICCT 102 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~-~~~~~~~~~~~l~~g~~~~~ 102 (263)
-.+++|+|+||||||||+.+|... ..|.+++|+.-||++... + |.-.... . ..++++. .+++.+....
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR---s~~srG~lGG 127 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR---SSPSRGTLGG 127 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe---ecCCCccchh
Confidence 348999999999999999999765 569999999999865221 1 1111111 0 1222221 2222211112
Q ss_pred cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-H---Hhh------cccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLA-S---VLW------LDDQLESAVRLDSIITDVVILNKVDLVSPE 172 (263)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-~---~~~------~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~ 172 (263)
+.....+.+. ++ ....+|+|||||+|+...+... . ++. ..+.++...+.-..+.|++|+||.|+-..+
T Consensus 128 lS~at~~~i~-~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~A~ 205 (323)
T COG1703 128 LSRATREAIK-LL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKGAE 205 (323)
T ss_pred hhHHHHHHHH-HH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhhHH
Confidence 2222223332 22 3479999999999998876432 1 110 011122111222235699999999965543
Q ss_pred CCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744 173 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY 230 (263)
Q Consensus 173 ~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~ 230 (263)
.....+...|+... .......|..+++.+||.+|+|+++|++.+.+|..
T Consensus 206 ---~a~r~l~~al~~~~------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 206 ---KAARELRSALDLLR------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ---HHHHHHHHHHHhhc------ccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 24455666665442 11123446668899999999999999999987754
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=9.8e-17 Score=139.45 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=107.2
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.++..+|+|+|+||||||||+|+|+ |.+++++++.+++|............ .. ..++|+ ||.. .....+.
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~~~i~~i~~~~~-~q--i~~iDT-PG~~--~~~~~l~ 71 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRHRIRGIVTEDD-AQ--IIFVDT-PGIH--KPKRALN 71 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCcccccEEEEEEcCC-ce--EEEEEC-CCCC--CchhHHH
Confidence 3567899999999999999999999 88899999998876554433333221 12 136787 5642 2222333
Q ss_pred HHHHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 109 QALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 109 ~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
+.+..... ....+|.+++-.+...........+ ...+.. .. .+.++|+||+|+.+.. ..+....+.+..
T Consensus 72 ~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i--~~~l~~-~~----~pvilVlNKiDl~~~~---~~l~~~~~~l~~ 141 (292)
T PRK00089 72 RAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFI--LEKLKK-VK----TPVILVLNKIDLVKDK---EELLPLLEELSE 141 (292)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHH--HHHHhh-cC----CCEEEEEECCcCCCCH---HHHHHHHHHHHh
Confidence 33333322 1257888887443322111111111 111211 11 4589999999998432 122333333333
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh-----ccCCCCCCCCCCEEEE
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH-----QYKSSQNLHDNNVRTL 244 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~-----~~~~~~~~~~~~i~~~ 244 (263)
.. ++.+++++||++|.|+++|.+++... ++|+.+..++.+.+++
T Consensus 142 ~~-------------~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~ 190 (292)
T PRK00089 142 LM-------------DFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFL 190 (292)
T ss_pred hC-------------CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHH
Confidence 22 24568899999999999999888743 3455555555544433
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.67 E-value=2.9e-16 Score=135.02 Aligned_cols=174 Identities=18% Similarity=0.192 Sum_probs=100.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
.|+++|+||||||||+|+|+ +.+++++++.+++|+..........+ .. ..++|+ ||.. .....+...+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~~i~~i~~~~~-~q--ii~vDT-PG~~--~~~~~l~~~~~~ 71 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRNRISGIHTTGA-SQ--IIFIDT-PGFH--EKKHSLNRLMMK 71 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccCcEEEEEEcCC-cE--EEEEEC-cCCC--CCcchHHHHHHH
Confidence 58899999999999999999 88889999999987754433332221 22 247888 5542 122233333332
Q ss_pred HHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ....+|.+++-.+.- ++...... +...+.. .. .+.++|+||+|+.+.. ........+....
T Consensus 72 ~~~~~l~~aDvvl~VvD~~-~~~~~~~~--i~~~l~~-~~----~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~--- 136 (270)
T TIGR00436 72 EARSAIGGVDLILFVVDSD-QWNGDGEF--VLTKLQN-LK----RPVVLTRNKLDNKFKD----KLLPLIDKYAILE--- 136 (270)
T ss_pred HHHHHHhhCCEEEEEEECC-CCCchHHH--HHHHHHh-cC----CCEEEEEECeeCCCHH----HHHHHHHHHHhhc---
Confidence 221 125788887733321 11111111 1111211 11 4589999999997543 1111112222111
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEE
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVR 242 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~ 242 (263)
.+.+++++||++|.|+++|.+++.+ +++|+.+..++++.+
T Consensus 137 ----------~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~ 181 (270)
T TIGR00436 137 ----------DFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDR 181 (270)
T ss_pred ----------CCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHH
Confidence 2346899999999999999988874 334555555555443
No 19
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.4e-16 Score=124.84 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=117.8
Q ss_pred eEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcc
Q 024744 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC 98 (263)
Q Consensus 19 ~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~ 98 (263)
++......++....|-|+++|++|+|||||||+|++ .++.+-++..||.|+.+....+... ..++|+ ||.
T Consensus 11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNff~~~~~------~~lVDl-PGY 80 (200)
T COG0218 11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINFFEVDDE------LRLVDL-PGY 80 (200)
T ss_pred EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEEEEecCc------EEEEeC-CCc
Confidence 445566777777899999999999999999999993 2457899999998877665544432 247899 777
Q ss_pred eEeec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC
Q 024744 99 ICCTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS 174 (263)
Q Consensus 99 ~~~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~ 174 (263)
.+... ++.+...+.+.+..+.....+++-.++-..|...... +.+.+.. .. ++.+|++||+|.++..+.
T Consensus 81 GyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e--m~~~l~~-~~----i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 81 GYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDRE--MIEFLLE-LG----IPVIVVLTKADKLKKSER 153 (200)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHH--HHHHHHH-cC----CCeEEEEEccccCChhHH
Confidence 76653 4556667777776656677777655555555543221 1122221 12 448999999999987532
Q ss_pred cchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 175 GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 175 ~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
...+..+++.+..-.+ +...++..|+.++.|+++++..|.+.
T Consensus 154 ~k~l~~v~~~l~~~~~------------~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 154 NKQLNKVAEELKKPPP------------DDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred HHHHHHHHHHhcCCCC------------ccceEEEEecccccCHHHHHHHHHHH
Confidence 1222333322221111 11126677888999999999887653
No 20
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.66 E-value=4.6e-16 Score=136.19 Aligned_cols=183 Identities=17% Similarity=0.246 Sum_probs=107.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-CCCCcceeeeeeecCcceEeec
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-GEGGALVEEWVELANGCICCTV 103 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~~~~~~~~~~~~l~~g~~~~~~ 103 (263)
..+|+|+|+||||||||++.|... ..|.+++++..|+++... + |...... ..... -++...++ +|.+
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~---~~~r~~~~--~~~l 130 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPN---AFIRPSPS--SGTL 130 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCC---eEEEecCC--cccc
Confidence 348999999999999999998664 348899999999976320 0 2111211 11111 12233244 3554
Q ss_pred c---hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH-H-----hhcc----cccccceeeCeEEeeEEEEecCCCCC
Q 024744 104 K---HSLVQALEQLVQRKERLDHILLETTGLANPAPLAS-V-----LWLD----DQLESAVRLDSIITDVVILNKVDLVS 170 (263)
Q Consensus 104 ~---~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~-~-----~~~~----~~l~~~~~~~~~i~~iivlNK~Dl~~ 170 (263)
. ....+.+..+ . ...+|++++||+|+........ . +... +.+.........+++++|+||+|+.+
T Consensus 131 ~~~a~~~~~~~~~~-~-~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 131 GGVARKTRETMLLC-E-AAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDN 208 (332)
T ss_pred cchHHHHHHHHHHH-h-ccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccc
Confidence 4 2233333333 2 3689999999999986543311 0 0000 01111111011245899999999987
Q ss_pred CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
.........++++.++..+|..+ .+..+++.+||.+|.|+++|++.+.++.
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~--------~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDP--------GWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred hhHHHHHHHHHHHHHhccccccc--------CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 64322234445555544333211 1224788999999999999999998754
No 21
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=4e-16 Score=138.06 Aligned_cols=180 Identities=21% Similarity=0.252 Sum_probs=109.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
..++++|.+|||||||+|+|+ +.+++++++.+++|++.....+...+ ..+ .++|+ +|.. .....+...+.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi-~~~DT-pG~~--~~~~~l~~~~~ 122 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITGIITLKD--TQV-ILYDT-PGIF--EPKGSLEKAMV 122 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEEEEEeCC--eEE-EEEEC-CCcC--CCcccHHHHHH
Confidence 378999999999999999999 77888888888887655444443322 222 47888 4531 22222333333
Q ss_pred HHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
+.+. ....+|.+++-.+........... + ...+... . .+.++|+||+|+.+. .+..+.+.++..++
T Consensus 123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~-i-l~~l~~~-~----~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~- 189 (339)
T PRK15494 123 RCAWSSLHSADLVLLIIDSLKSFDDITHN-I-LDKLRSL-N----IVPIFLLNKIDIESK-----YLNDIKAFLTENHP- 189 (339)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCHHHHH-H-HHHHHhc-C----CCEEEEEEhhcCccc-----cHHHHHHHHHhcCC-
Confidence 3221 124788888844432211221111 1 1111111 1 236789999998653 23455555554433
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEEE
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSIC 247 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~~ 247 (263)
+.+++++||++|.|++++.+++.. +++|+.+..+|++.++++.+
T Consensus 190 ------------~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~e 238 (339)
T PRK15494 190 ------------DSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAE 238 (339)
T ss_pred ------------CcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 236889999999999999998873 55677777777766655443
No 22
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=3e-16 Score=140.81 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=102.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~ 112 (263)
-|+|+|+||||||||+|+|+ +.++ .+++.+++|+......+.... .+.+ .++|+ ||.+-.... ..+...+.
T Consensus 161 dValVG~PNaGKSTLln~Lt----~~k~-~vs~~p~TT~~p~~Giv~~~~-~~~i-~~vDt-PGi~~~a~~~~~Lg~~~l 232 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS----AAKP-KVADYPFTTLVPNLGVVRVDD-ERSF-VVADI-PGLIEGASEGAGLGIRFL 232 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh----CCcc-cccCCCCCccCcEEEEEEeCC-CcEE-EEEeC-CCccccccchhhHHHHHH
Confidence 58999999999999999999 4454 678888888877766665432 2211 37888 665322111 11222222
Q ss_pred HHHHhccCCcEEEEcccCCC---CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 113 QLVQRKERLDHILLETTGLA---NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~---~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
+. ....|.+++-.. +. ...+..+...+..++..+.......|.++|+||+|+.+..+ +....+.+....
T Consensus 233 ~~---i~radvlL~VVD-~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~ 304 (390)
T PRK12298 233 KH---LERCRVLLHLID-IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----AEERAKAIVEAL 304 (390)
T ss_pred HH---HHhCCEEEEEec-cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----HHHHHHHHHHHh
Confidence 22 245677666332 22 11111111111122222110001145899999999976531 222222222221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEE
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSI 246 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~ 246 (263)
+. ...++++||.++.|+++|.+.+.. +++|+.+..++++.+++..
T Consensus 305 ~~------------~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~ 354 (390)
T PRK12298 305 GW------------EGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWD 354 (390)
T ss_pred CC------------CCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHH
Confidence 11 114789999999999999877753 3445666666666655543
No 23
>COG2262 HflX GTPases [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=126.04 Aligned_cols=170 Identities=21% Similarity=0.308 Sum_probs=103.4
Q ss_pred cccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (263)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 103 (263)
++......+|.|+++|+.|||||||+|+|++ ..+ .+.+..-.|.+.....+.-.+ +..+ -+.|+ -| ....+
T Consensus 184 R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~----~~~-~~~d~LFATLdpttR~~~l~~-g~~v-lLtDT-VG-FI~~L 254 (411)
T COG2262 184 RKKRSRSGIPLVALVGYTNAGKSTLFNALTG----ADV-YVADQLFATLDPTTRRIELGD-GRKV-LLTDT-VG-FIRDL 254 (411)
T ss_pred hhhhcccCCCeEEEEeeccccHHHHHHHHhc----cCe-eccccccccccCceeEEEeCC-CceE-EEecC-cc-CcccC
Confidence 4455567899999999999999999999993 322 233333233443333322221 1100 12333 22 23456
Q ss_pred chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744 104 KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK 183 (263)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~ 183 (263)
...+.++++..+++...+|+++. +.+.++|....++....+.+... .... +|.++|+||+|++.... ...
T Consensus 255 P~~LV~AFksTLEE~~~aDlllh-VVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~~~-------~~~ 324 (411)
T COG2262 255 PHPLVEAFKSTLEEVKEADLLLH-VVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLEDEE-------ILA 324 (411)
T ss_pred ChHHHHHHHHHHHHhhcCCEEEE-EeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCchh-------hhh
Confidence 67888999999887788898665 55667774433322222333332 1111 66999999999987641 112
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+....| ..+++||.+|.|++.|...|..
T Consensus 325 ~~~~~~~---------------~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 325 ELERGSP---------------NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred hhhhcCC---------------CeEEEEeccCcCHHHHHHHHHH
Confidence 2221111 4678999999999999988764
No 24
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=9.7e-16 Score=129.13 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=113.5
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-c-hhH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-K-HSL 107 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~-~~~ 107 (263)
.+.--++++|.||+|||||.|.++ |.|++.++....||+....+++..++ .+.+ ++|+ ||.+.... + ..+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~TTr~~ilgi~ts~e-TQlv--f~DT-PGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHTTRHRILGIITSGE-TQLV--FYDT-PGLVSKKMHRRHHL 141 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccceeeeeeEEEecCc-eEEE--EecC-CcccccchhhhHHH
Confidence 344579999999999999999999 99999999999988766666666543 3333 6777 66654221 1 111
Q ss_pred -HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccc----ccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744 108 -VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDD----QLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELE 182 (263)
Q Consensus 108 -~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~ 182 (263)
...++..-.....+|.+++ +.|.+.- -..+++ .+..+.. ++.++|+||+|.+.... .+-.+.
T Consensus 142 ~~s~lq~~~~a~q~AD~vvV----v~Das~t--r~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k~---~Ll~l~ 208 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVV----VVDASAT--RTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQKR---LLLNLK 208 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEE----EEeccCC--cCccChHHHHHHHHHhc----CCceeeccchhcchhhh---HHhhhH
Confidence 1122222222257898888 4444320 001112 1222223 44888999999776532 111222
Q ss_pred HH------------HHhhc---CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh-----hhccCCCCCCCCCCEE
Q 024744 183 KE------------IHEIN---SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE-----EHQYKSSQNLHDNNVR 242 (263)
Q Consensus 183 ~~------------l~~~~---p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~-----~~~~~~~~~~~~~~i~ 242 (263)
+. +++.+ |......+.-+--.|+++|.+||++|+|++++.++|- +++.|+.+..+++.-+
T Consensus 209 ~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e 288 (379)
T KOG1423|consen 209 DLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPE 288 (379)
T ss_pred HhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHH
Confidence 22 22222 2111222222222378999999999999999999886 3455665555554444
Q ss_pred EEE
Q 024744 243 TLS 245 (263)
Q Consensus 243 ~~~ 245 (263)
.++
T Consensus 289 ~l~ 291 (379)
T KOG1423|consen 289 FLC 291 (379)
T ss_pred HHH
Confidence 433
No 25
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.1e-14 Score=129.88 Aligned_cols=155 Identities=22% Similarity=0.242 Sum_probs=96.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l 111 (263)
-++|+|+||+|||||+|+|+ +...+||++-+|||+++....++-++ ..+ .++|+++ . ....+..+. +
T Consensus 219 kvvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GTTRDviee~i~i~G--~pv-~l~DTAG-i---Ret~d~VE~iGI 287 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGTTRDVIEEDINLNG--IPV-RLVDTAG-I---RETDDVVERIGI 287 (454)
T ss_pred eEEEECCCCCcHHHHHHHHh----cCCceEecCCCCCccceEEEEEEECC--EEE-EEEecCC-c---ccCccHHHHHHH
Confidence 36799999999999999999 88889999999999887665555533 222 4567633 1 122333333 2
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
++-......+|+||+-.++....... +..... ..+...+.++|+||+|+.+.... ..+ +..
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~-d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~----~~~-----~~~-- 348 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKE-DLALIE-------LLPKKKPIIVVLNKADLVSKIEL----ESE-----KLA-- 348 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchh-hHHHHH-------hcccCCCEEEEEechhccccccc----chh-----hcc--
Confidence 22222336899999944433211111 111111 11222448999999999987521 111 111
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
+-..++.+||++|+|++.|.+.|....
T Consensus 349 -----------~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 349 -----------NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred -----------CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 111478899999999999998887543
No 26
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=120.88 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=90.1
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSLV 108 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~ 108 (263)
.++-++++||||||||||+|+|..+.+ .|-...|.| +......+...+..+ ..+.|+ ||.+-.+ .++.-.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp----kVa~YaFTT-L~P~iG~v~yddf~q--~tVADi-PGiI~GAh~nkGlG~ 266 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP----KVAHYAFTT-LRPHIGTVNYDDFSQ--ITVADI-PGIIEGAHMNKGLGY 266 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC----cccccceee-eccccceeeccccce--eEeccC-ccccccccccCcccH
Confidence 444688999999999999999996543 343444432 333333233221111 245666 6665432 233334
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
+.|+.+- +.+.=+.+++.++-....++.++..+..++..+-+...-.+.+||+||+|+.+.++ +.+.+..+.+
T Consensus 267 ~FLrHiE--R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-----~~l~~L~~~l 339 (366)
T KOG1489|consen 267 KFLRHIE--RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-----NLLSSLAKRL 339 (366)
T ss_pred HHHHHHH--hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-----HHHHHHHHHc
Confidence 4554442 23333334444443222444433222233322212222245899999999975431 1223322222
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. ..++++||++++|+.+|.+.+++
T Consensus 340 q~--------------~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 340 QN--------------PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CC--------------CcEEEeeeccccchHHHHHHHhh
Confidence 11 14789999999999999887654
No 27
>PRK11058 GTPase HflX; Provisional
Probab=99.50 E-value=2e-13 Score=124.01 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=93.8
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
...+|.|+|+|++|||||||+|+|+ +.++. +.+.+++|++.....+...+... ..++|+ +|.+ ......+.
T Consensus 194 ~~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~~i~l~~~~~--~~l~DT-aG~~-r~lp~~lv 264 (426)
T PRK11058 194 KADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLRRIDVADVGE--TVLADT-VGFI-RHLPHDLV 264 (426)
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceEEEEeCCCCe--EEEEec-Cccc-ccCCHHHH
Confidence 3466889999999999999999999 65655 56667766654433333222111 136777 4431 22234444
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
+.+...+.....+|.+++-.+ ..+|............+... .. .-++.++|+||+|+.+... ..+.. ...
T Consensus 265 e~f~~tl~~~~~ADlIL~VvD-aS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~~-----~~~~~--~~~ 334 (426)
T PRK11058 265 AAFKATLQETRQATLLLHVVD-AADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDFE-----PRIDR--DEE 334 (426)
T ss_pred HHHHHHHHHhhcCCEEEEEEe-CCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCchh-----HHHHH--Hhc
Confidence 555555544467888877433 34443222111001111111 10 1145899999999975421 11110 000
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+....+.+||++|.|+++|.+++...
T Consensus 335 --------------~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 335 --------------NKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred --------------CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 11124679999999999999888753
No 28
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=1.1e-13 Score=121.99 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=87.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~ 112 (263)
=|+|+|+||||||||||+|+. .+.. +.+.+++|+......+.... ... ..++|+ +|.+-.... ..+.....
T Consensus 160 dVglVG~PNaGKSTLln~ls~----a~~~-va~ypfTT~~p~~G~v~~~~-~~~-~~i~D~-PGli~ga~~~~gLg~~fl 231 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSA----AKPK-IADYPFTTLHPNLGVVRVDD-YKS-FVIADI-PGLIEGASEGAGLGHRFL 231 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHc----CCCc-cCCCCCceeCceEEEEEeCC-CcE-EEEEeC-CCccCCCCccccHHHHHH
Confidence 489999999999999999994 3433 45556666766555554321 111 146788 555322211 11222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
+.+ ...+.+++-. .+.++..+.+...+...+..+......++.++|+||+|+.+.... ..+..+...+..+
T Consensus 232 rhi---e~a~vlI~Vi-D~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--- 302 (335)
T PRK12299 232 KHI---ERTRLLLHLV-DIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--- 302 (335)
T ss_pred HHh---hhcCEEEEEE-cCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC---
Confidence 222 3456655522 233322222211112222221110012468999999999865421 0111111111110
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+++++||++++|++++..++...
T Consensus 303 ------------~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 303 ------------GPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred ------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 247889999999999999888653
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=2.8e-13 Score=125.15 Aligned_cols=186 Identities=20% Similarity=0.176 Sum_probs=100.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee---cchhH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKHSL 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~ 107 (263)
..+-++++|.+|+|||||+|+|+ +....++++.+|+|++.....+... +..+ .++|+ +|..-.. ...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~----~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~-~l~DT-aG~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA----GEERSVVDDVAGTTVDPVDSLIELG--GKTW-RFVDT-AGLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCccCCcceEEEEEC--CEEE-EEEEC-CCccccccccchHHH
Confidence 34678999999999999999999 5555667788887654333223222 1222 46787 4421000 00112
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
...+.... ....+|.+++-.+.. ++....+...+. .+.. .-++.++|+||+|+.+... ...+...++.
T Consensus 282 ~~~~~~~~-~i~~ad~vilV~Da~-~~~s~~~~~~~~-~~~~-----~~~piIiV~NK~Dl~~~~~----~~~~~~~i~~ 349 (472)
T PRK03003 282 YASLRTHA-AIEAAEVAVVLIDAS-EPISEQDQRVLS-MVIE-----AGRALVLAFNKWDLVDEDR----RYYLEREIDR 349 (472)
T ss_pred HHHHHHHH-HHhcCCEEEEEEeCC-CCCCHHHHHHHH-HHHH-----cCCCEEEEEECcccCChhH----HHHHHHHHHH
Confidence 22222111 114678877743322 221111111111 1111 1145899999999986431 2233333332
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
.... ..+.+++.+||++|.|++++...+..... .+.+.+++++|++||+
T Consensus 350 ~l~~----------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~----------------~~~~~i~t~~ln~~~~ 398 (472)
T PRK03003 350 ELAQ----------VPWAPRVNISAKTGRAVDKLVPALETALE----------------SWDTRIPTGRLNAWLG 398 (472)
T ss_pred hccc----------CCCCCEEEEECCCCCCHHHHHHHHHHHHH----------------HhcccCCHHHHHHHHH
Confidence 2111 12346788999999999999887754221 1233466777777765
No 30
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.47 E-value=3.4e-13 Score=117.64 Aligned_cols=185 Identities=22% Similarity=0.210 Sum_probs=96.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-C-CCCcceeeeeeecCcceEe
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-G-EGGALVEEWVELANGCICC 101 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~-~~~~~~~~~~~l~~g~~~~ 101 (263)
...+++|+|++|||||||++.|... ..|.+++++..|+..... + +...+.. . ..+. .+..+++.|...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 109 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGA---FIRSMPTRGHLG 109 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCc---eeeecCcccccc
Confidence 3468999999999999999999764 458899999999765221 1 1101110 0 0111 122232222111
Q ss_pred ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhH-HHHh---h-c-----ccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVL---W-L-----DDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~---~-~-----~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
.........+.. +. ...+|+||+||+|+..+... .+.. . . .+.+......-..+++++++||+|+...
T Consensus 110 ~~~~~~~~~~~~-l~-~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 110 GLSQATRELILL-LD-AAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGA 187 (300)
T ss_pred chhHHHHHHHHH-HH-hCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccch
Confidence 111112223333 32 36899999999998765432 1110 0 0 0001111010112458999999999865
Q ss_pred CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.........+...+..+.... ..+..+++++||.+|+|+++|.+++..+
T Consensus 188 ~~~~~~~~~~~~~l~~l~~~~--------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 188 TNVTIARLMLALALEEIRRRE--------DGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred hHHHHHHHHHHHHHhhccccc--------cCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 411000001111222221110 0011257899999999999999988764
No 31
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.46 E-value=4.3e-13 Score=119.10 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=92.7
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...+.|+++|++|||||||+|+|+ +.+ .++.+.+++|++.....+...+ +.. ..++|+ +|.+ .....++.+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~----~~~-~~v~~~~~tT~d~~~~~i~~~~-~~~-i~l~DT-~G~~-~~l~~~lie 257 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALT----GAD-VYAADQLFATLDPTTRRLDLPD-GGE-VLLTDT-VGFI-RDLPHELVA 257 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh----CCc-eeeccCCccccCCEEEEEEeCC-Cce-EEEEec-Cccc-ccCCHHHHH
Confidence 355789999999999999999999 554 4556666766655433333311 111 246777 4431 222344445
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.++..+.....+|.+++-.+. .+|....+.......+... ... -++.++|+||+|+.+.. .+.. +..
T Consensus 258 ~f~~tle~~~~ADlil~VvD~-s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~~~-------~v~~-~~~-- 324 (351)
T TIGR03156 258 AFRATLEEVREADLLLHVVDA-SDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLDEP-------RIER-LEE-- 324 (351)
T ss_pred HHHHHHHHHHhCCEEEEEEEC-CCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCChH-------hHHH-HHh--
Confidence 555554444578888774443 3443221111001111111 110 14589999999997642 1111 111
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ..+++.+||++|.|+++|.+++..
T Consensus 325 ~-------------~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 325 G-------------YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred C-------------CCCEEEEEccCCCCHHHHHHHHHh
Confidence 0 113678999999999999988753
No 32
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.45 E-value=5.9e-13 Score=107.43 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=90.9
Q ss_pred eEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG 97 (263)
Q Consensus 19 ~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (263)
++.-+.+.+...+.+-++|+|.+|+|||||+|+|++ .+ ++.+...+|+|..+...... . . ..++|+ +|
T Consensus 5 ~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~----~~~~~~~~~~~~~t~~~~~~~~~--~--~--~~liDt-pG 73 (179)
T TIGR03598 5 KSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTN----RKKLARTSKTPGRTQLINFFEVN--D--G--FRLVDL-PG 73 (179)
T ss_pred eeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCcceEEEEEEeC--C--c--EEEEeC-CC
Confidence 444455666667778899999999999999999994 32 34445556655544322221 1 1 246787 55
Q ss_pred ceEeec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC
Q 024744 98 CICCTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER 173 (263)
Q Consensus 98 ~~~~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~ 173 (263)
...... +..+...+...+......+.+++-.+.-.......... ...+.. . -++.++++||+|+.++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~--~~~~~~-~----~~pviiv~nK~D~~~~~~ 146 (179)
T TIGR03598 74 YGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM--LEWLRE-R----GIPVLIVLTKADKLKKSE 146 (179)
T ss_pred CccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHH--HHHHHH-c----CCCEEEEEECcccCCHHH
Confidence 322211 22233334444433334566666333222111111100 011111 1 145899999999986542
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhh
Q 024744 174 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 219 (263)
Q Consensus 174 ~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~ 219 (263)
.....+.+++.++... ....++++||++|+|++
T Consensus 147 ~~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 147 LNKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence 2222344444443321 11268999999999874
No 33
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=2.8e-13 Score=122.57 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=85.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~ 112 (263)
-|+|+|+||||||||||+|++ .+..| .+.+++|+......+.... ... ..++|+ ||.+..... ..+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~----ak~kI-a~ypfTTl~PnlG~v~~~~-~~~-~~laD~-PGliega~~~~gLg~--- 228 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN----AKPKI-ANYHFTTLVPNLGVVETDD-GRS-FVMADI-PGLIEGASEGVGLGH--- 228 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc----CCCcc-ccCCcceeceEEEEEEEeC-Cce-EEEEEC-CCCcccccccchHHH---
Confidence 699999999999999999994 34333 4555665655544443321 111 247888 665432221 11211
Q ss_pred HHHHhccCCcEEEEcccC--C--CCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 113 QLVQRKERLDHILLETTG--L--ANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G--~--~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
..+......+.+++-.+. . .+|... ...+...+..+.....-++.+||+||+|+.... +.+.+..+.+
T Consensus 229 ~fLrhier~~llI~VID~s~~~~~dp~e~--~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~------e~l~~l~~~l 300 (424)
T PRK12297 229 QFLRHIERTRVIVHVIDMSGSEGRDPIED--YEKINKELKLYNPRLLERPQIVVANKMDLPEAE------ENLEEFKEKL 300 (424)
T ss_pred HHHHHHhhCCEEEEEEeCCccccCChHHH--HHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH------HHHHHHHHHh
Confidence 222222345666653322 1 123221 111122222211100125689999999984331 2222222222
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .+++++||++++|+++|..++.+
T Consensus 301 ~---------------~~i~~iSA~tgeGI~eL~~~L~~ 324 (424)
T PRK12297 301 G---------------PKVFPISALTGQGLDELLYAVAE 324 (424)
T ss_pred C---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence 1 14788999999999999888763
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=5.1e-14 Score=129.00 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=91.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|.+|+|||||+|+|+ +....++.+.+|+|+......+... +.. ..++|+ +|........+..+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~~~~~~~~~~~--~~~-~~lvDT-~G~~~~~~~~~~~e~~ 244 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTRDSIDTPFERD--GQK-YTLIDT-AGIRRKGKVTEGVEKY 244 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceEEEEEEEEEEC--Cee-EEEEEC-CCCCCCcchhhHHHHH
Confidence 3468999999999999999999 5556777888887654322222221 111 246787 4421111001111111
Q ss_pred --HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 112 --EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 112 --~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.+.......+|.+++-.+........ +... ...+.. .-.+.++++||+|+.+.+ ..+.+.+.++...
T Consensus 245 ~~~~~~~~~~~ad~~ilViD~~~~~~~~-~~~i-~~~~~~-----~~~~~ivv~NK~Dl~~~~----~~~~~~~~~~~~l 313 (435)
T PRK00093 245 SVIRTLKAIERADVVLLVIDATEGITEQ-DLRI-AGLALE-----AGRALVIVVNKWDLVDEK----TMEEFKKELRRRL 313 (435)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHH-HHHHHH-----cCCcEEEEEECccCCCHH----HHHHHHHHHHHhc
Confidence 11111124667777733332111111 1110 011111 114589999999998543 3455666665443
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+.. ...+++++||++|.|++++.+.+.
T Consensus 314 ~~~----------~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 314 PFL----------DYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred ccc----------cCCCEEEEeCCCCCCHHHHHHHHH
Confidence 322 345789999999999998887764
No 35
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.45 E-value=4e-13 Score=103.21 Aligned_cols=140 Identities=18% Similarity=0.275 Sum_probs=85.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-+.++|+.|||||||+++|.+.... +..|..+. +...++|+++..+.+. . ....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~---------~~KTq~i~-----------~~~~~IDTPGEyiE~~---~---~y~a 56 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR---------YKKTQAIE-----------YYDNTIDTPGEYIENP---R---FYHA 56 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC---------cCccceeE-----------ecccEEECChhheeCH---H---HHHH
Confidence 4789999999999999999843110 01111110 1123566644333221 1 2233
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
++....++|.|++ +.+...-.. ...+.+...+. .+.+-|+||+|+.+.+ .++++.++.|+..
T Consensus 57 Li~ta~dad~V~l----l~dat~~~~--~~pP~fa~~f~----~pvIGVITK~Dl~~~~---~~i~~a~~~L~~a----- 118 (143)
T PF10662_consen 57 LIVTAQDADVVLL----LQDATEPRS--VFPPGFASMFN----KPVIGVITKIDLPSDD---ANIERAKKWLKNA----- 118 (143)
T ss_pred HHHHHhhCCEEEE----EecCCCCCc--cCCchhhcccC----CCEEEEEECccCccch---hhHHHHHHHHHHc-----
Confidence 3333468899988 544443211 12333444443 3488899999999432 2467777777654
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+..++|.+|+.+|+|+++|.+.|+
T Consensus 119 ---------G~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 119 ---------GVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ---------CCCCeEEEECCCCcCHHHHHHHHh
Confidence 456789999999999999998875
No 36
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.44 E-value=2e-13 Score=131.90 Aligned_cols=167 Identities=17% Similarity=0.120 Sum_probs=93.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--c-chhH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--V-KHSL 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~-~~~~ 107 (263)
..+-++++|.+|||||||+|+|+ +.+..++.+.+|+|++.....+...+ ..+ .++|+ +|..--. . ..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~-~liDT-aG~~~~~~~~~~~e~ 520 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVDEIVEIDG--EDW-LFIDT-AGIKRRQHKLTGAEY 520 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcceeEEEECC--CEE-EEEEC-CCcccCcccchhHHH
Confidence 34688999999999999999999 66667778888886654333333322 112 36787 4421000 0 0111
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
...+.... .....|.+++-.+...... ..+.... ..+.. .-++.++|+||+|+.+.. ..+.+.+.++.
T Consensus 521 ~~~~r~~~-~i~~advvilViDat~~~s-~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~----~~~~~~~~~~~ 588 (712)
T PRK09518 521 YSSLRTQA-AIERSELALFLFDASQPIS-EQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEF----RRQRLERLWKT 588 (712)
T ss_pred HHHHHHHH-HhhcCCEEEEEEECCCCCC-HHHHHHH-HHHHH-----cCCCEEEEEEchhcCChh----HHHHHHHHHHH
Confidence 12222221 1246788777433321111 1111111 11111 114589999999998753 23445555544
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+. +++.+++++||++|.|+++|.+.+.+
T Consensus 589 ~l~~----------~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 589 EFDR----------VTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred hccC----------CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3222 24556788999999999999887654
No 37
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=3.5e-13 Score=115.64 Aligned_cols=166 Identities=20% Similarity=0.226 Sum_probs=89.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~~~l~ 112 (263)
|+++|+|||||||||+++..++ .-|-.+.|.| +...-..++......++ +.|+ ||.+-.. ..+.-.+.|+
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak----PKIadYpFTT-L~PnLGvV~~~~~~sfv--~ADI-PGLIEGAs~G~GLG~~FLr 233 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK----PKIADYPFTT-LVPNLGVVRVDGGESFV--VADI-PGLIEGASEGVGLGLRFLR 233 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC----CcccCCcccc-ccCcccEEEecCCCcEE--EecC-cccccccccCCCccHHHHH
Confidence 7899999999999999999553 3444555543 54444444431111111 4555 5555322 1222233444
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.+- +.+.=+.+|+.+..-...+..+...+..++..+-..-..++.+||+||+|++..+ +.++.+.+.+.+...+.
T Consensus 234 HIE--Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~---e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 234 HIE--RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE---EELEELKKALAEALGWE 308 (369)
T ss_pred HHH--hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH---HHHHHHHHHHHHhcCCC
Confidence 332 1233344555554432222222222233343332222225589999999966553 24566666666543322
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
..+.|||.+++|+++|...+.
T Consensus 309 -------------~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 309 -------------VFYLISALTREGLDELLRALA 329 (369)
T ss_pred -------------cceeeehhcccCHHHHHHHHH
Confidence 122299999999988876554
No 38
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.43 E-value=3.3e-13 Score=123.72 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~ 112 (263)
-|+|+|+||||||||||+|+. .+.. +.+.+++|+......+.... .. ..++|+ +|.+-.. ....+...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~----akpk-IadypfTTl~P~lGvv~~~~--~~-f~laDt-PGliegas~g~gLg~~-- 229 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSA----AKPK-IADYPFTTLVPNLGVVQAGD--TR-FTVADV-PGLIPGASEGKGLGLD-- 229 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhc----CCcc-ccccCcccccceEEEEEECC--eE-EEEEEC-CCCccccchhhHHHHH--
Confidence 589999999999999999994 4443 36667777765555554322 11 246788 5543211 11111111
Q ss_pred HHHHhccCCcEEEEcccC--C---CCchhHHHHhhccccccccee---------eCeEEeeEEEEecCCCCCCCCCcchH
Q 024744 113 QLVQRKERLDHILLETTG--L---ANPAPLASVLWLDDQLESAVR---------LDSIITDVVILNKVDLVSPERSGDSL 178 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G--~---~~p~~~~~~~~~~~~l~~~~~---------~~~~i~~iivlNK~Dl~~~~~~~~~~ 178 (263)
++......|.|++..+. . .+|....+ .+..++..+.. ....+|.+||+||+|+.+..+ ..
T Consensus 230 -fLrhieradvLv~VVD~s~~e~~rdp~~d~~--~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~ 303 (500)
T PRK12296 230 -FLRHIERCAVLVHVVDCATLEPGRDPLSDID--ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LA 303 (500)
T ss_pred -HHHHHHhcCEEEEEECCcccccccCchhhHH--HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HH
Confidence 22212356776653222 1 12222111 11122221110 001256899999999975431 11
Q ss_pred HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.+...+... . -+++++||.+++|+++|..++.+
T Consensus 304 e~l~~~l~~~--------------g-~~Vf~ISA~tgeGLdEL~~~L~e 337 (500)
T PRK12296 304 EFVRPELEAR--------------G-WPVFEVSAASREGLRELSFALAE 337 (500)
T ss_pred HHHHHHHHHc--------------C-CeEEEEECCCCCCHHHHHHHHHH
Confidence 2223233221 1 14789999999999999887763
No 39
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4.8e-13 Score=114.31 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=98.2
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
.+.|.++|.|+||+|||||+++|+ +.++-|-.+.|.| .++.-+-...+. .-.+++|+ ||.+--.+.+.-.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT----~AkpEvA~YPFTT-K~i~vGhfe~~~---~R~QvIDT-PGlLDRPl~ErN~I 236 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLT----TAKPEVAPYPFTT-KGIHVGHFERGY---LRIQVIDT-PGLLDRPLEERNEI 236 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHh----cCCCccCCCCccc-cceeEeeeecCC---ceEEEecC-CcccCCChHHhcHH
Confidence 367899999999999999999999 6666777777765 565544343321 11368898 77653322222111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhH-----HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPL-----ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE 184 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~-----~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~ 184 (263)
..+.++..+.-.+.|++ +.||++. .+...+..++...+. .+.++|+||+|..+.+ .++++...
T Consensus 237 E~qAi~AL~hl~~~IlF----~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~e----~~~~~~~~ 304 (346)
T COG1084 237 ERQAILALRHLAGVILF----LFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADEE----KLEEIEAS 304 (346)
T ss_pred HHHHHHHHHHhcCeEEE----EEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccchh----HHHHHHHH
Confidence 22223222345677887 7777653 112222233444444 3489999999999775 34555555
Q ss_pred HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+... +..+.+.+++..+.+.+.+...+.
T Consensus 305 ~~~~--------------~~~~~~~~~~~~~~~~d~~~~~v~ 332 (346)
T COG1084 305 VLEE--------------GGEEPLKISATKGCGLDKLREEVR 332 (346)
T ss_pred HHhh--------------ccccccceeeeehhhHHHHHHHHH
Confidence 4332 223456778888888776665443
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=5.3e-13 Score=122.06 Aligned_cols=167 Identities=20% Similarity=0.187 Sum_probs=91.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL- 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l- 111 (263)
.-++++|.+|+|||||+|+|+ +....++...+|+|+......+...+ .. ..++|+ +|..-.....+..+..
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~----~~~~~~~~~~~gtt~~~~~~~~~~~~--~~-~~liDT-~G~~~~~~~~~~~e~~~ 244 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALL----GEERVIVSDIAGTTRDSIDIPFERNG--KK-YLLIDT-AGIRRKGKVTEGVEKYS 244 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHH----CCCeeecCCCCCceECcEeEEEEECC--cE-EEEEEC-CCccccccchhhHHHHH
Confidence 468899999999999999999 55556677778876543222222211 11 246777 3421100000011111
Q ss_pred -HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 -EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 -~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.+.......+|.+++-.+.. ++....+.... ..+.. .-++.++|+||+|+++.. ..++.+.+.++...+
T Consensus 245 ~~~~~~~~~~ad~~ilV~D~~-~~~~~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 245 VLRTLKAIERADVVLLVLDAT-EGITEQDLRIA-GLILE-----AGKALVIVVNKWDLVKDE---KTREEFKKELRRKLP 314 (429)
T ss_pred HHHHHHHHHhCCEEEEEEECC-CCccHHHHHHH-HHHHH-----cCCcEEEEEECcccCCCH---HHHHHHHHHHHHhcc
Confidence 11111124678877744332 22111111111 11111 114589999999998321 245666666665443
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. ...+++++||++|.|++++.+++..
T Consensus 315 ~~----------~~~~vi~~SA~~g~~v~~l~~~i~~ 341 (429)
T TIGR03594 315 FL----------DFAPIVFISALTGQGVDKLLDAIDE 341 (429)
T ss_pred cC----------CCCceEEEeCCCCCCHHHHHHHHHH
Confidence 22 3456889999999999998887654
No 41
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.39 E-value=1.7e-12 Score=114.39 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~ 112 (263)
-|+|+|+||||||||+|+|+.. +. .+.+.+.+|+......+.... ... ..++|+ +|.+-.... ..+.....
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~----~~-~va~y~fTT~~p~ig~v~~~~-~~~-~~i~D~-PGli~~a~~~~gLg~~fl 230 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAA----KP-KIADYPFTTLVPNLGVVRVDD-GRS-FVIADI-PGLIEGASEGAGLGHRFL 230 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcC----Cc-cccCCCCCccCCEEEEEEeCC-ceE-EEEEeC-CCcccCCcccccHHHHHH
Confidence 5899999999999999999943 32 234445555544443333221 111 246788 665422211 11222222
Q ss_pred HHHHhccCCcEEEEcccCCCCc---hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 113 QLVQRKERLDHILLETTGLANP---APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p---~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
+.+ ...+.+++..+ +.+. .++.+...+..++..+......++.+||+||+|+.++. ..+++.+.+.+..
T Consensus 231 rhi---erad~ll~VvD-~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~----~~~~~~~~l~~~~ 302 (329)
T TIGR02729 231 KHI---ERTRVLLHLID-ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE----ELAELLKELKKAL 302 (329)
T ss_pred HHH---HhhCEEEEEEc-CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH----HHHHHHHHHHHHc
Confidence 222 24566655332 3322 11111111112222211100124589999999998653 2233333333211
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .+++++||++++|++++..++..
T Consensus 303 ~--------------~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 303 G--------------KPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred C--------------CcEEEEEccCCcCHHHHHHHHHH
Confidence 1 14788999999999999888754
No 42
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.39 E-value=1.1e-12 Score=104.39 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=80.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~~ 113 (263)
|+++|.+|||||||+|+|.. .+. .+...+++|.......+..... .. ..++|+ +|..-.. ....+...
T Consensus 3 v~ivG~~~~GKStl~~~l~~----~~~-~v~~~~~~t~~~~~~~~~~~~~-~~-~~l~Dt-pG~~~~~~~~~~~~~~--- 71 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN----AKP-KIADYPFTTLVPNLGVVRVDDG-RS-FVVADI-PGLIEGASEGKGLGHR--- 71 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc----CCc-cccCCCccccCCcceEEEcCCC-Ce-EEEEec-CcccCcccccCCchHH---
Confidence 68999999999999999984 332 3334444444332222222111 01 246777 4431110 00111111
Q ss_pred HHHhccCCcEEEEcccCCCCc-hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p-~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
........|.+++-.+ ..++ ............+........-.+.++|+||+|+.+.... .+.+...++..
T Consensus 72 ~~~~~~~~d~vi~v~D-~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~---- 143 (170)
T cd01898 72 FLRHIERTRLLLHVID-LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKEL---- 143 (170)
T ss_pred HHHHHHhCCEEEEEEe-cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhC----
Confidence 1111235677666333 3444 2221111111111111100012458999999999876421 12222222211
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+++.+||+++.|++++.+++.+
T Consensus 144 ----------~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 144 ----------WGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred ----------CCCCEEEEecCCCCCHHHHHHHHHh
Confidence 1124688999999999999888754
No 43
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.2e-12 Score=121.46 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=107.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL- 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l- 111 (263)
..++++|.||+|||||+|+|++. + ..+.|-+|.|+....+.....+.. .+++|+ ||...-+.. ...+.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~----~-q~VgNwpGvTVEkkeg~~~~~~~~---i~ivDL-PG~YSL~~~-S~DE~Va 73 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA----N-QKVGNWPGVTVEKKEGKLKYKGHE---IEIVDL-PGTYSLTAY-SEDEKVA 73 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc----C-ceecCCCCeeEEEEEEEEEecCce---EEEEeC-CCcCCCCCC-CchHHHH
Confidence 35899999999999999999943 3 366899998887776666654322 257888 665322211 112222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.+.+ ...++|+|+- +.|...+..-+++.-++.+. . ++.++++|++|........-+.+++.+.|.
T Consensus 74 r~~l-l~~~~D~ivn----VvDAtnLeRnLyltlQLlE~-g----~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----- 138 (653)
T COG0370 74 RDFL-LEGKPDLIVN----VVDATNLERNLYLTLQLLEL-G----IPMILALNMIDEAKKRGIRIDIEKLSKLLG----- 138 (653)
T ss_pred HHHH-hcCCCCEEEE----EcccchHHHHHHHHHHHHHc-C----CCeEEEeccHhhHHhcCCcccHHHHHHHhC-----
Confidence 2333 2478999988 77777765544433333332 2 348999999999887665556677777762
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ +++++||++|+|++++.+.+.+
T Consensus 139 v-------------PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 139 V-------------PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred C-------------CEEEEEeecCCCHHHHHHHHHH
Confidence 2 4788999999999999887754
No 44
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.38 E-value=6e-12 Score=98.91 Aligned_cols=163 Identities=21% Similarity=0.315 Sum_probs=89.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+...++++|++|||||||+|+++ +.+++++.+..+++........... .. -..++|+ +|.... .......
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~liDt-pG~~~~--~~~~~~~ 71 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRNRIRGIYTDD--DA-QIIFVDT-PGIHKP--KKKLGER 71 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCceeceEEEEEEcC--Ce-EEEEEEC-CCCCcc--hHHHHHH
Confidence 34679999999999999999999 6677777776655332222222111 11 1236776 553211 1111112
Q ss_pred HHHHH-HhccCCcEEEEcccCCCCc-hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 111 LEQLV-QRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 111 l~~~~-~~~~~~d~ilie~~G~~~p-~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
+.... ......|.+++-.+ ..++ ...... ....+... . .+.++++||+|+.... ..+.++.+.++..
T Consensus 72 ~~~~~~~~~~~~d~i~~v~d-~~~~~~~~~~~--~~~~~~~~-~----~~~iiv~nK~Dl~~~~---~~~~~~~~~~~~~ 140 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVD-ASEPIGEGDEF--ILELLKKS-K----TPVILVLNKIDLVKDK---EDLLPLLEKLKEL 140 (168)
T ss_pred HHHHHHHHHHhCCEEEEEEE-CCCccCchHHH--HHHHHHHh-C----CCEEEEEEchhccccH---HHHHHHHHHHHhc
Confidence 22121 11246677766333 2232 111111 11111111 1 3489999999998432 1334444445443
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++ ..+++.+|++++.|++++.+++.+
T Consensus 141 ~~-------------~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 141 GP-------------FAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred cC-------------CCceEEEEeccCCChHHHHHHHHh
Confidence 33 235788999999999999888754
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=1.9e-12 Score=119.62 Aligned_cols=160 Identities=21% Similarity=0.157 Sum_probs=90.1
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..|.|+|+|.+|+|||||+|+|+ +.+.+++.+.+|.|++.....+...+ .. ..++|+ +|.. .....+...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gvT~d~~~~~~~~~~--~~-~~l~DT-~G~~--~~~~~~~~~ 106 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGVTRDRVSYDAEWNG--RR-FTVVDT-GGWE--PDAKGLQAS 106 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCCCEeeEEEEEEECC--cE-EEEEeC-CCcC--CcchhHHHH
Confidence 45889999999999999999999 66667778888865543332222211 11 246777 4421 111122233
Q ss_pred HHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
+...... ...+|.+++-.++.......... +...+.. ..+|.++|+||+|+...+. .... ...+
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~--i~~~l~~-----~~~piilV~NK~Dl~~~~~------~~~~-~~~~- 171 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEA--VARVLRR-----SGKPVILAANKVDDERGEA------DAAA-LWSL- 171 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHH--HHHHHHH-----cCCCEEEEEECccCCccch------hhHH-HHhc-
Confidence 3333221 24689888854443221111111 1111211 1145999999999865321 1111 1111
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
++...+++||++|.|+++|.+++...
T Consensus 172 -------------g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 172 -------------GLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred -------------CCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 23345789999999999999887643
No 46
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.32 E-value=2.7e-12 Score=101.19 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=78.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEec--CCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN--EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~--~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
+++++|.+|||||||+|+|++. +...... ..+.|+........... ... ..++|+ +|- ..+...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~----~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~-~~~~Dt-pG~------~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI----ETDRLPEEKKRGITIDLGFAYLDLPS-GKR-LGFIDV-PGH------EKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc----ccccchhhhccCceEEeeeEEEEecC-CcE-EEEEEC-CCh------HHHHHHH
Confidence 5789999999999999999842 2122221 12322332222121110 111 256787 442 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.. ....+|.+++-.+........ .+.+. .+. .. ...+.++++||+|+.+........+++.+.++...
T Consensus 69 ~~---~~~~ad~ii~V~d~~~~~~~~~~~~~~---~~~-~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~- 137 (164)
T cd04171 69 LA---GAGGIDLVLLVVAADEGIMPQTREHLE---ILE-LL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF- 137 (164)
T ss_pred Hh---hhhcCCEEEEEEECCCCccHhHHHHHH---HHH-Hh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC-
Confidence 22 224678887733321111111 11110 011 01 11248899999999764211011233333333210
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
....+++++||++|.|++++.+.+.
T Consensus 138 -----------~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 138 -----------LADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred -----------cCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 0123578999999999999987764
No 47
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.30 E-value=2.6e-11 Score=96.14 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=85.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHH--H
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQ--A 110 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~--~ 110 (263)
.++++|.+|+|||||+|+|++ ....+..+.++++.......+...+ .. ..++++ +|..-- .....+.. .
T Consensus 4 ~i~i~G~~~~GKstli~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~iiDt-pG~~~~~~~~~~~e~~~~ 75 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLG----EERVIVSDIAGTTRDSIDVPFEYDG--KK-YTLIDT-AGIRRKGKVEEGIEKYSV 75 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhC----ccceeccCCCCCccCceeeEEEECC--ee-EEEEEC-CCCccccchhccHHHHHH
Confidence 578999999999999999994 3334444555543322111122111 11 136777 443110 00111111 1
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
+... .....+|.+++-.+. .++........ ...+.. .. .+.++++||+|+.+... ...+.+.+.+++..+
T Consensus 76 ~~~~-~~~~~~d~vi~v~d~-~~~~~~~~~~~-~~~~~~-~~----~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 145 (174)
T cd01895 76 LRTL-KAIERADVVLLVIDA-TEGITEQDLRI-AGLILE-EG----KALVIVVNKWDLVEKDS--KTMKEFKKEIRRKLP 145 (174)
T ss_pred HHHH-HHHhhcCeEEEEEeC-CCCcchhHHHH-HHHHHh-cC----CCEEEEEeccccCCccH--HHHHHHHHHHHhhcc
Confidence 1111 112467777774432 22221111110 011111 01 45899999999987631 134555666655433
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. ...+++++||+++.|++++...+.
T Consensus 146 ~~----------~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 146 FL----------DYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred cc----------cCCceEEEeccCCCCHHHHHHHHH
Confidence 21 234688999999999999887764
No 48
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.30 E-value=1.2e-11 Score=101.83 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=82.7
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...+.|+|+|++|||||||+|+++.. .. .+.+.++.|.......+....... ..++|+ +|...+. ......
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~~~~~~~~~~~--~~i~Dt-~G~~~~~-~~~~~~ 109 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTTRRLRLPDGRE--VLLTDT-VGFIRDL-PHQLVE 109 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceeccceeEEEEecCCce--EEEeCC-CccccCC-CHHHHH
Confidence 44578999999999999999999943 21 122222322322222222111111 245677 5542221 112222
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.+.........+|.+++-.+ ..++............+... ... -++.++|+||+|+.+... .. .....
T Consensus 110 ~~~~~~~~~~~~d~ii~v~D-~~~~~~~~~~~~~~~~l~~~-~~~-~~~viiV~NK~Dl~~~~~----~~---~~~~~-- 177 (204)
T cd01878 110 AFRSTLEEVAEADLLLHVVD-ASDPDYEEQIETVEKVLKEL-GAE-DIPMILVLNKIDLLDDEE----LE---ERLEA-- 177 (204)
T ss_pred HHHHHHHHHhcCCeEEEEEE-CCCCChhhHHHHHHHHHHHc-CcC-CCCEEEEEEccccCChHH----HH---HHhhc--
Confidence 23333222346777776333 22332221110001111111 111 145899999999977531 11 11111
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+++.+||++|.|++++.++|..
T Consensus 178 -------------~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 178 -------------GRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred -------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 1235789999999999999888753
No 49
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.29 E-value=7e-12 Score=121.30 Aligned_cols=160 Identities=20% Similarity=0.223 Sum_probs=91.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-c--chhHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-V--KHSLVQ 109 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~--~~~~~~ 109 (263)
..++++|.||+|||||+|+|+ |.+. .+.+.+|+|+......+... +.. ..++|+ ||..... . .....+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt----g~~~-~vgn~pGvTve~k~g~~~~~--~~~-i~lvDt-PG~ysl~~~~~~~s~~E 74 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT----GARQ-RVGNWAGVTVERKEGQFSTT--DHQ-VTLVDL-PGTYSLTTISSQTSLDE 74 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh----CCCC-ccCCCCCceEeeEEEEEEcC--ceE-EEEEEC-CCccccccccccccHHH
Confidence 468999999999999999998 4333 45777888765544444332 111 257888 5542211 0 112223
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.+.+.......+|.+++ +.|........++..++.+. . +|.++++||+|+.+......+.+++.+. +.
T Consensus 75 ~i~~~~l~~~~aD~vI~----VvDat~ler~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~~~i~id~~~L~~~---LG 142 (772)
T PRK09554 75 QIACHYILSGDADLLIN----VVDASNLERNLYLTLQLLEL-G----IPCIVALNMLDIAEKQNIRIDIDALSAR---LG 142 (772)
T ss_pred HHHHHHHhccCCCEEEE----EecCCcchhhHHHHHHHHHc-C----CCEEEEEEchhhhhccCcHHHHHHHHHH---hC
Confidence 32222212357899887 44444332222211222221 2 5599999999987654321222222222 11
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+++++||.+|+|++++.+.+...
T Consensus 143 ---------------~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 143 ---------------CPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred ---------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence 147889999999999999887653
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.28 E-value=1.5e-11 Score=112.45 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=92.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++|+|.+|+|||||+|+|+ +.+.+++.+.+|.|++.....+...+ .. ..++|+ +|.. .....+.+.+...
T Consensus 2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t~d~~~~~~~~~~--~~-~~liDT-pG~~--~~~~~~~~~~~~~ 71 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVTRDRKYGDAEWGG--RE-FILIDT-GGIE--EDDDGLDKQIREQ 71 (429)
T ss_pred EEEECCCCCCHHHHHHHHh----CCCcceecCCCCcccCceEEEEEECC--eE-EEEEEC-CCCC--CcchhHHHHHHHH
Confidence 7899999999999999999 66667888888876544333333221 11 246787 4431 1222233444333
Q ss_pred HHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
... ...+|.+++-.++.......... +...+.. .. ++.++|+||+|+.+.+.. . ..+.
T Consensus 72 ~~~~~~~ad~vl~vvD~~~~~~~~d~~--i~~~l~~-~~----~piilVvNK~D~~~~~~~---~----~~~~------- 130 (429)
T TIGR03594 72 AEIAIEEADVILFVVDGREGLTPEDEE--IAKWLRK-SG----KPVILVANKIDGKKEDAV---A----AEFY------- 130 (429)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHH-hC----CCEEEEEECccCCccccc---H----HHHH-------
Confidence 322 24688888855543222221111 1111211 11 448999999998865421 1 1111
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+++.+++.+||.+|.|++++.+.+...
T Consensus 131 -------~lg~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 131 -------SLGFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred -------hcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 1245578999999999999998887643
No 51
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.28 E-value=8.1e-12 Score=99.10 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=79.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|+|||||+++|...... ..+........|++.+...+... ... ..++|+ +|- ..+.......
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~------~~~~~~~~~~ 70 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSK-YKGLPPSKITPTVGLNIGTIEVG--NAR-LKFWDL-GGQ------ESLRSLWDKY 70 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhccc-ccCCcccccCCccccceEEEEEC--CEE-EEEEEC-CCC------hhhHHHHHHH
Confidence 679999999999999999743110 00011111122233222222221 111 245666 332 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
...+|.+++-.+ ..++..+.... ++...+... .. .-+|.++++||+|+.+.. ..+.+.+.++......
T Consensus 71 ---~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~-~~-~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~- 139 (167)
T cd04160 71 ---YAECHAIIYVID-STDRERFEESKSALEKVLRNE-AL-EGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEI- 139 (167)
T ss_pred ---hCCCCEEEEEEE-CchHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEEccccccCC----CHHHHHHHhccccccc-
Confidence 246777777222 23332222111 111111110 00 115589999999987653 2344444443321110
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+. ...+++.+||++|.|++++..||.
T Consensus 140 ------~~-~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 ------GR-RDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ------cC-CceEEEEeeCCCCcCHHHHHHHHh
Confidence 00 112578899999999999998874
No 52
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.28 E-value=8.5e-12 Score=97.54 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=81.9
Q ss_pred EEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHHH
Q 024744 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115 (263)
Q Consensus 36 ~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~ 115 (263)
+++|.+|+|||||+|+|+ +.+...+.+.+++|........... +.. ..++|+ +|.... ...+...+....
T Consensus 1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~i~Dt-pG~~~~--~~~~~~~~~~~~ 70 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIYGEAEWG--GRE-FILIDT-GGIEPD--DEGISKEIREQA 70 (157)
T ss_pred CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCceeEEEEEC--CeE-EEEEEC-CCCCCc--hhHHHHHHHHHH
Confidence 478999999999999999 5555666666665443322222211 111 246777 443211 111222222221
Q ss_pred -HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 116 -QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 116 -~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
......|.+++-.+.. ++...... .+...+.. .. .+.++|+||+|+.+... . ...+..+
T Consensus 71 ~~~~~~~d~ii~v~d~~-~~~~~~~~-~~~~~~~~-~~----~piiiv~nK~D~~~~~~------~-~~~~~~~------ 130 (157)
T cd01894 71 ELAIEEADVILFVVDGR-EGLTPADE-EIAKYLRK-SK----KPVILVVNKVDNIKEED------E-AAEFYSL------ 130 (157)
T ss_pred HHHHHhCCEEEEEEecc-ccCCccHH-HHHHHHHh-cC----CCEEEEEECcccCChHH------H-HHHHHhc------
Confidence 1124678877744332 11111110 00111111 11 45899999999987531 1 2222222
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+..+++.+|+++|.|++++.+++..
T Consensus 131 --------~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 131 --------GFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred --------CCCCeEEEecccCCCHHHHHHHHHh
Confidence 2235788999999999999887653
No 53
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.5e-12 Score=111.54 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=93.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA-- 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-- 110 (263)
+-++|+|+||+|||||+|+|+ ...++||++.+|+|++.....+..++ ..+ .+.|+++ .- - ...+..+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GTTRDaiea~v~~~G--~~v-~L~DTAG-iR-e-~~~~~iE~~g 338 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGTTRDAIEAQVTVNG--VPV-RLSDTAG-IR-E-ESNDGIEALG 338 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCcchhhheeEeecCC--eEE-EEEeccc-cc-c-ccCChhHHHh
Confidence 368899999999999999999 77889999999998865554454432 222 3456532 21 1 11122222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCch--------hHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744 111 LEQLVQRKERLDHILLETTGLANPA--------PLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDE 180 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~--------~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~ 180 (263)
+++--++...+|+|++ +.|+. .+.+.+. .....-... .....+.+++.||.|+.+.-..
T Consensus 339 I~rA~k~~~~advi~~----vvda~~~~t~sd~~i~~~l~-~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~------ 407 (531)
T KOG1191|consen 339 IERARKRIERADVILL----VVDAEESDTESDLKIARILE-TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE------ 407 (531)
T ss_pred HHHHHHHHhhcCEEEE----EecccccccccchHHHHHHH-HhccceEEEeccccccceEEEechhhccCcccc------
Confidence 2222223357899988 55541 1222211 000000000 0011348899999999876210
Q ss_pred HHHHHHhhcCCCeEEE-eecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~-~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.++.++.. ...+.-.+.....+|+.+++|..+|...+.
T Consensus 408 --------~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all 446 (531)
T KOG1191|consen 408 --------MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALL 446 (531)
T ss_pred --------ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHH
Confidence 12322221 112222334455689999999999987765
No 54
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=8.6e-12 Score=120.61 Aligned_cols=160 Identities=23% Similarity=0.182 Sum_probs=93.0
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...+.|+|+|.||+|||||+|+|+ +.+.+++.+.+|.|++......... +.. ..++|+ +|... ....+..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT~d~~~~~~~~~--~~~-~~liDT-~G~~~--~~~~~~~ 342 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVTRDRVSYDAEWA--GTD-FKLVDT-GGWEA--DVEGIDS 342 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCeeEEEEEEEEEEC--CEE-EEEEeC-CCcCC--CCccHHH
Confidence 345789999999999999999999 6677888888887654432222221 111 246777 44321 1122333
Q ss_pred HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
.+...... ...+|.+++-.++-....+....+ ...+.. .-++.++|+||+|+.+.. ....+.. .
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i--~~~Lr~-----~~~pvIlV~NK~D~~~~~------~~~~~~~-~- 407 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERI--VRMLRR-----AGKPVVLAVNKIDDQASE------YDAAEFW-K- 407 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH--HHHHHh-----cCCCEEEEEECcccccch------hhHHHHH-H-
Confidence 33333221 247899988555432222221111 111211 114599999999986542 1111111 1
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++...+++||.+|.|+++|.+++..
T Consensus 408 -------------lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 408 -------------LGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred -------------cCCCCeEEEECCCCCCchHHHHHHHH
Confidence 12334678999999999999888764
No 55
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.25 E-value=3.2e-11 Score=95.72 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=77.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec--chhHH-H
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV--KHSLV-Q 109 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~-~ 109 (263)
|.++++|.+|+|||||+|+++.. +.. +.+.+++|..+........ ... ..++|+ +|..-... +..+. .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~----~~~-~~~~~~~t~~~~~~~~~~~--~~~-~~i~Dt-~G~~~~~~~~~~~~~~~ 71 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA----KPE-VAPYPFTTKSLFVGHFDYK--YLR-WQVIDT-PGLLDRPLEERNTIEMQ 71 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC----CCc-cCCCCCcccceeEEEEccC--ceE-EEEEEC-CCcCCccccCCchHHHH
Confidence 56899999999999999999953 221 1222333333322222111 111 256787 44311111 11111 1
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchh--HHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~--~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.+..+ ....|.+++-.+ ..++.. ..........+.... ..++.++|+||+|+.+..+ .....+.. .
T Consensus 72 ~~~~~---~~~~d~~l~v~d-~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~----~~~~~~~~-~ 139 (168)
T cd01897 72 AITAL---AHLRAAVLFLFD-PSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFED----LSEIEEEE-E 139 (168)
T ss_pred HHHHH---HhccCcEEEEEe-CCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhh----HHHHHHhh-h
Confidence 11111 123455555222 121111 111111111222211 1255999999999986542 12211111 1
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ....++.+||++|.|++++.+++..
T Consensus 140 ~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 140 L--------------EGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred h--------------ccCceEEEEecccCCHHHHHHHHHH
Confidence 1 1125788999999999999988754
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.25 E-value=4.1e-11 Score=109.83 Aligned_cols=157 Identities=21% Similarity=0.166 Sum_probs=91.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
+.|+|+|.+|+|||||+|+|+ +.+.+++...+|.|++.....+...+ .. ..++|+ +|... ....+...+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~t~d~~~~~~~~~~--~~-~~liDT-~G~~~--~~~~~~~~~~ 71 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGVTRDRIYGEAEWLG--RE-FILIDT-GGIEP--DDDGFEKQIR 71 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCCcccceEEEEEECC--cE-EEEEEC-CCCCC--cchhHHHHHH
Confidence 578999999999999999999 66667778878875544333333221 21 257888 55321 1111333333
Q ss_pred HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
..... ...+|.+++-.++..........+ ...+... . ++.++|+||+|+.+.+ ....+. ..
T Consensus 72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~--~~~l~~~-~----~piilv~NK~D~~~~~------~~~~~~-~~---- 133 (435)
T PRK00093 72 EQAELAIEEADVILFVVDGRAGLTPADEEI--AKILRKS-N----KPVILVVNKVDGPDEE------ADAYEF-YS---- 133 (435)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHH--HHHHHHc-C----CcEEEEEECccCccch------hhHHHH-Hh----
Confidence 33221 247899888555433222211111 1112111 1 4589999999976532 111111 11
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+++++||.+|.|++++.+.+..
T Consensus 134 ----------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 134 ----------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 13345788999999999999988765
No 57
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.24 E-value=4.2e-11 Score=94.78 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=78.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+++|.+|+|||||+|+|.+... + .... ..+. .... .++|+ ||...+ ...+...+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---~---~~~~---~~v~-----~~~~-----~~iDt-pG~~~~--~~~~~~~~~- 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---L---ARKT---QAVE-----FNDK-----GDIDT-PGEYFS--HPRWYHALI- 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---c---Cccc---eEEE-----ECCC-----CcccC-CccccC--CHHHHHHHH-
Confidence 488999999999999999884311 0 0111 1111 1000 14677 553222 122222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.....+|.+++..+.- ++.... ...+... . ...+.++++||+|+.+.. .+.+.+.+.....
T Consensus 60 --~~~~~ad~il~v~d~~-~~~s~~-----~~~~~~~-~--~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~--- 120 (158)
T PRK15467 60 --TTLQDVDMLIYVHGAN-DPESRL-----PAGLLDI-G--VSKRQIAVISKTDMPDAD-----VAATRKLLLETGF--- 120 (158)
T ss_pred --HHHhcCCEEEEEEeCC-Cccccc-----CHHHHhc-c--CCCCeEEEEEccccCccc-----HHHHHHHHHHcCC---
Confidence 2235789988844432 221110 1111111 0 013478999999986532 3555555554422
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+++.+||++|+|+++|.+.+.+.
T Consensus 121 ----------~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 121 ----------EEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred ----------CCCEEEEECCCccCHHHHHHHHHHh
Confidence 1367889999999999999887653
No 58
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.24 E-value=2.8e-11 Score=95.31 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=79.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|||||||+++++.. +... ...++.+.+.....+...+.... ..++|+ +|. ......+...
T Consensus 3 i~liG~~~~GKSsli~~l~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~~~D~-~G~------~~~~~~~~~~ 69 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD----TFDN-QYQATIGIDFLSKTMYLEDKTVR-LQLWDT-AGQ------ERFRSLIPSY 69 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC----CCCc-cCCCceeeeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHHHH
Confidence 679999999999999999843 2211 22222211111111111111111 246776 441 2333333333
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
+ ...|.+++- .++.++..+......-..+... ...-.+.++++||+|+.+..+. ..+......+..+ .
T Consensus 70 ~---~~~~~ii~v-~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~-- 137 (161)
T cd01861 70 I---RDSSVAVVV-YDITNRQSFDNTDKWIDDVRDE--RGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--A-- 137 (161)
T ss_pred h---ccCCEEEEE-EECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--C--
Confidence 3 356666662 2344444332221111111111 1112569999999999654321 2233333332221 2
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||.+|.|++++..++.+
T Consensus 138 -----------~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 138 -----------MFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred -----------EEEEEeCCCCCCHHHHHHHHHH
Confidence 3678999999999999988754
No 59
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.24 E-value=1.8e-11 Score=97.74 Aligned_cols=161 Identities=21% Similarity=0.196 Sum_probs=77.5
Q ss_pred EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHHHHHHHHH
Q 024744 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQALEQLV 115 (263)
Q Consensus 37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~~~l~~~~ 115 (263)
|+|++|||||||+|+|++ .+. .+.+.+++|.......+.... +.. ..++|+ +|..- ......+...+...
T Consensus 1 iiG~~~~GKStll~~l~~----~~~-~~~~~~~~t~~~~~~~~~~~~-~~~-~~i~Dt-pG~~~~~~~~~~~~~~~~~~- 71 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN----AKP-KVANYPFTTLEPNLGVVEVPD-GAR-IQVADI-PGLIEGASEGRGLGNQFLAH- 71 (176)
T ss_pred CCCCCCCcHHHHHHHHhc----CCc-cccCCCceeecCcceEEEcCC-CCe-EEEEec-cccchhhhcCCCccHHHHHH-
Confidence 579999999999999994 333 233444444443332222210 111 256787 44211 01111111111112
Q ss_pred HhccCCcEEEEcccCCCCc------hhHHHHhhcccccccceee-----CeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744 116 QRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRL-----DSIITDVVILNKVDLVSPERSGDSLDELEKE 184 (263)
Q Consensus 116 ~~~~~~d~ilie~~G~~~p------~~~~~~~~~~~~l~~~~~~-----~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~ 184 (263)
....|.+++-.+. .++ ....+.......+...... ..-+|.++|+||+|+.+... .......
T Consensus 72 --~~~~d~ii~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~ 144 (176)
T cd01881 72 --IRRADAILHVVDA-SEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----LEEELVR 144 (176)
T ss_pred --HhccCEEEEEEec-cCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----HHHHHHH
Confidence 2356776664443 222 1111111001111111000 01256899999999987642 1222111
Q ss_pred HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
..... ....++.+||+++.|++++.+++.
T Consensus 145 ~~~~~-------------~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 145 ELALE-------------EGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred HHhcC-------------CCCCEEEEehhhhcCHHHHHHHHH
Confidence 11111 123578899999999999887753
No 60
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=105.37 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=41.9
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~ 99 (263)
.+-..++++|||++|||||+|+|+ +.+..+-..+|.| +....+++...+ +.+ +++++ ||.+
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LT----nt~seva~y~FTT-l~~VPG~l~Y~g--a~I-Qild~-Pgii 121 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLT----NTKSEVADYPFTT-LEPVPGMLEYKG--AQI-QLLDL-PGII 121 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHh----CCCccccccCcee-cccccceEeecC--ceE-EEEcC-cccc
Confidence 344479999999999999999999 5555566677654 666666666543 322 45666 4443
No 61
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.22 E-value=5.7e-11 Score=96.84 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=84.7
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----c
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----K 104 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~ 104 (263)
-..+-++++|.+|||||||+|+|+. .+ ++.+...+|.|+.+....+. .. ..++|+ +|...... +
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~~~~-----~~-l~l~Dt-pG~~~~~~~~~~~ 90 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTN----RKNLARTSKTPGRTQLINFFEVN-----DK-LRLVDL-PGYGYAKVSKEEK 90 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCceeEEEEEecC-----Ce-EEEeCC-CCCCCcCCCchHH
Confidence 3556799999999999999999994 32 34445555654433321111 11 246777 44211111 2
Q ss_pred hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE 184 (263)
Q Consensus 105 ~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~ 184 (263)
..+...+...+......+.+++-.+ ..++....... +...+.. .. ++.++++||+|+.+..+ .+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~~~~~-i~~~l~~-~~----~~~iiv~nK~Dl~~~~~----~~~~~~~ 159 (196)
T PRK00454 91 EKWQKLIEEYLRTRENLKGVVLLID-SRHPLKELDLQ-MIEWLKE-YG----IPVLIVLTKADKLKKGE----RKKQLKK 159 (196)
T ss_pred HHHHHHHHHHHHhCccceEEEEEEe-cCCCCCHHHHH-HHHHHHH-cC----CcEEEEEECcccCCHHH----HHHHHHH
Confidence 2233333333332234455554222 11221111100 0111111 11 33788999999987542 2333333
Q ss_pred HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++...... ...++++||++|.|++++.+++..
T Consensus 160 i~~~l~~~-----------~~~~~~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 160 VRKALKFG-----------DDEVILFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred HHHHHHhc-----------CCceEEEEcCCCCCHHHHHHHHHH
Confidence 32221100 124678999999999999988764
No 62
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.22 E-value=9.4e-11 Score=90.59 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=73.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||+|++++. +.. ...+ ...+.. ..++++ +|.. . ........+
T Consensus 3 v~liG~~~vGKSsL~~~l~~~----~~~----~~~t-~~~~~~-----------~~~iDt-~G~~---~--~~~~~~~~~ 56 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE----EIL----YKKT-QAVEYN-----------DGAIDT-PGEY---V--ENRRLYSAL 56 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC----ccc----cccc-eeEEEc-----------CeeecC-chhh---h--hhHHHHHHH
Confidence 689999999999999999843 221 1111 222210 135666 3321 0 011112222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
......+|.+++-.+ +.++...... .+..... .+.++|+||+|+.+... ..+...+.++..+
T Consensus 57 ~~~~~~ad~vilv~d-~~~~~s~~~~-----~~~~~~~----~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~----- 118 (142)
T TIGR02528 57 IVTAADADVIALVQS-ATDPESRFPP-----GFASIFV----KPVIGLVTKIDLAEADV---DIERAKELLETAG----- 118 (142)
T ss_pred HHHhhcCCEEEEEec-CCCCCcCCCh-----hHHHhcc----CCeEEEEEeeccCCccc---CHHHHHHHHHHcC-----
Confidence 222357888888443 2333222111 1111111 25888999999975321 2333344443321
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l 225 (263)
..+++.+||++|.|++++..++
T Consensus 119 ---------~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 119 ---------AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred ---------CCcEEEEecCCCCCHHHHHHHH
Confidence 2246889999999999998775
No 63
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.21 E-value=1.2e-10 Score=92.21 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=80.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcC-CCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
|+++|+|.+|+|||||+|+|+... +.. ....+.|.......+... ..... ..++|+ +|. ..+....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~----~~~-~~~~~~t~~~~~~~~~~~~~~~~~-~~iiDt-pG~------~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN----VAA-GEAGGITQHIGAFEVPAEVLKIPG-ITFIDT-PGH------EAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc----ccc-ccCCCeEEeeccEEEecccCCcce-EEEEeC-CCc------HHHHHHH
Confidence 679999999999999999998532 111 111122222111111111 01111 246787 442 1222211
Q ss_pred HHHHHhccCCcEEEEcccCCCCchh-HHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~-~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
... ....|.+++-.+....... ....+ ..+.. .. ++.++|+||+|+.+.. .+.+...++....
T Consensus 68 ~~~---~~~~d~il~v~d~~~~~~~~~~~~~---~~~~~-~~----~p~ivv~NK~Dl~~~~-----~~~~~~~~~~~~~ 131 (168)
T cd01887 68 ARG---ASLTDIAILVVAADDGVMPQTIEAI---KLAKA-AN----VPFIVALNKIDKPNAN-----PERVKNELSELGL 131 (168)
T ss_pred HHH---HhhcCEEEEEEECCCCccHHHHHHH---HHHHH-cC----CCEEEEEEceeccccc-----HHHHHHHHHHhhc
Confidence 111 1356777773332211111 11111 01111 11 4589999999987542 2344444443221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.. .. ..+ ...+++++||.+|.|++++.+++..+
T Consensus 132 ~~--~~-~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 132 QG--ED-EWG--GDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cc--cc-ccc--CcCcEEEeecccCCCHHHHHHHHHHh
Confidence 10 00 000 12357899999999999999988653
No 64
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.21 E-value=6.4e-11 Score=96.60 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=38.5
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.++++||+|+.+........+.+.+.++...... + ....+++++||++|.|+++|.+.+.+
T Consensus 122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-------~-~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT-------R-FKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc-------C-cCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 48899999999865422122344444443321100 0 01135789999999999999988765
No 65
>PRK04213 GTP-binding protein; Provisional
Probab=99.21 E-value=4.5e-11 Score=98.03 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=80.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcc-eEeecc----hh
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC-ICCTVK----HS 106 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~----~~ 106 (263)
.+-++++|.+|+|||||+|+|.+ .+. .....+|.|+... ..... . ..++|+ +|. ..-... +.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~----~~~-~~~~~~~~t~~~~--~~~~~--~---~~l~Dt-~G~~~~~~~~~~~~~~ 75 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG----KKV-RVGKRPGVTRKPN--HYDWG--D---FILTDL-PGFGFMSGVPKEVQEK 75 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCceeeCce--EEeec--c---eEEEeC-CccccccccCHHHHHH
Confidence 35689999999999999999984 322 2334455433221 11111 1 246787 442 111111 22
Q ss_pred HHHHHHHHHH-hccCCcEEEEcccCCCCchhHHHH--hhc-------ccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744 107 LVQALEQLVQ-RKERLDHILLETTGLANPAPLASV--LWL-------DDQLESAVRLDSIITDVVILNKVDLVSPERSGD 176 (263)
Q Consensus 107 ~~~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~--~~~-------~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~ 176 (263)
+...+..... .....+.+++ +.|+...... .+. +..+...... .-++.++|+||+|+.+.. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~vi~----v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~~--~~ 148 (201)
T PRK04213 76 IKDEIVRYIEDNADRILAAVL----VVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LGIPPIVAVNKMDKIKNR--DE 148 (201)
T ss_pred HHHHHHHHHHhhhhhheEEEE----EEeCccccccccccccCCCcHHHHHHHHHHHH-cCCCeEEEEECccccCcH--HH
Confidence 2222222322 1234567666 3333221100 000 0000010010 114589999999997643 11
Q ss_pred hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+++.+.+....+. .-....++++||++| |++++.+++...
T Consensus 149 ~~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 149 VLDEIAERLGLYPPW---------RQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred HHHHHHHHhcCCccc---------cccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 223333222100010 001124789999999 999999988754
No 66
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.21 E-value=2.6e-12 Score=107.10 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=100.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC--CCCeEEEEecCCCc-----ccccchhhhhcCCCCcceeeeeee-cCcceEeecc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEFGE-----EIGVERAMINEGEGGALVEEWVEL-ANGCICCTVK 104 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~~~~g~-----t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~~~~~~ 104 (263)
++++++|+.|||||||+.+|.... .+...-+|.-||.- ..++|. ++..++.-+...+.+ +||++...+.
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDI---RDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDI---RDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCch---hhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 478899999999999999996541 12223444444321 012221 111111111233455 6776654332
Q ss_pred ---hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-------HHhh-cccc----------------------cccce
Q 024744 105 ---HSLVQALEQLVQRKERLDHILLETTGLANPAPLA-------SVLW-LDDQ----------------------LESAV 151 (263)
Q Consensus 105 ---~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-------~~~~-~~~~----------------------l~~~~ 151 (263)
..+.+.+.-+-++...+++++|+|.|-.+...|. +.+. ..+. .+..+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 2222223222223357899999999955433221 1100 0000 01111
Q ss_pred eeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC-CCeEE-----------EeecCCCChhhhhccccCCcchhh
Q 024744 152 RLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS-LAHVI-----------RSVRCQVDLSEVLNCRAYDATHVT 219 (263)
Q Consensus 152 ~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p-~~~i~-----------~~~~~~~~~~~ii~isa~~g~~~~ 219 (263)
-+...+|.++++||+|+.+.+-...|+.++++....++. ....+ ..-+.. -..+.+|+.+|.|.+
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~---lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRS---LRTVGVSSVTGEGFD 253 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhh---CceEEEecccCCcHH
Confidence 111123489999999999987666677777766666653 11111 011111 135678999999999
Q ss_pred hhhhhhh
Q 024744 220 RLEGLLE 226 (263)
Q Consensus 220 ~l~~~l~ 226 (263)
++...+.
T Consensus 254 df~~av~ 260 (366)
T KOG1532|consen 254 DFFTAVD 260 (366)
T ss_pred HHHHHHH
Confidence 9887765
No 67
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.20 E-value=5.3e-11 Score=109.27 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=88.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA-- 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-- 110 (263)
..++++|.+|||||||+|+|+ +.+.+++.+.+|+|++.....+...+ .. ..++|+ +|.- . ..+..+.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~~~g--~~-i~l~DT-~G~~--~-~~~~ie~~g 284 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIEEHINLDG--IP-LRLIDT-AGIR--E-TDDEVEKIG 284 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEEEEEEECC--eE-EEEEeC-CCCC--C-CccHHHHHH
Confidence 357899999999999999999 66667788888886654433333221 11 246777 4421 1 1122221
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
+.+.......+|.+++-.+. .++....+...... ..-.+.++|+||+|+.+.... . ..
T Consensus 285 i~~~~~~~~~aD~il~VvD~-s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~----~-------~~-- 342 (449)
T PRK05291 285 IERSREAIEEADLVLLVLDA-SEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDL----E-------EE-- 342 (449)
T ss_pred HHHHHHHHHhCCEEEEEecC-CCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchh----h-------hc--
Confidence 22222223578888884433 22221111111111 111458999999999765310 1 00
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
....++.+||++|.|+++|.+++...
T Consensus 343 ------------~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 343 ------------NGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred ------------cCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 11246889999999999999988754
No 68
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.20 E-value=1.4e-10 Score=90.59 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=81.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH-HHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV-QALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-~~l~ 112 (263)
.++++|++|||||||+|++. +.+.+.+.+.++++........... +.. ..++|+ +|.. ....... ..+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~Dt-pG~~--~~~~~~~~~~~~ 72 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIEESIDIG--GIP-VRLIDT-AGIR--ETEDEIEKIGIE 72 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEEEEEEeC--CEE-EEEEEC-CCcC--CCcchHHHHHHH
Confidence 47899999999999999999 5555666666666443322112111 111 145676 4421 1111111 1111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.........|.+++-.+ ..++........... ....+.++++||+|+.+... . .
T Consensus 73 ~~~~~~~~~~~~v~v~d-~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~----~------~------- 126 (157)
T cd04164 73 RAREAIEEADLVLFVID-ASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSE----L------L------- 126 (157)
T ss_pred HHHHHHhhCCEEEEEEE-CCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCccc----c------c-------
Confidence 12122246777777222 222222211111110 11245899999999987641 0 0
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
......+++.+||+++.|++++.+++..
T Consensus 127 -------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 127 -------SLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred -------cccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 0112346788999999999999988765
No 69
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.20 E-value=4.3e-11 Score=93.80 Aligned_cols=154 Identities=22% Similarity=0.167 Sum_probs=79.8
Q ss_pred EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHHHH
Q 024744 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ 116 (263)
Q Consensus 37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~~ 116 (263)
|+|.+|+|||||+|++++ .+ ....+.+++|+......+... +.. ..++|+ +|....... .....+.....
T Consensus 1 l~G~~~~GKssl~~~~~~----~~-~~~~~~~~~t~~~~~~~~~~~--~~~-~~liDt-pG~~~~~~~-~~~~~~~~~~~ 70 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG----AR-QKVGNWPGVTVEKKEGRFKLG--GKE-IEIVDL-PGTYSLSPY-SEDEKVARDFL 70 (158)
T ss_pred CCCCCCCCHHHHHHHHhc----Cc-ccccCCCCcccccceEEEeeC--CeE-EEEEEC-CCccccCCC-ChhHHHHHHHh
Confidence 579999999999999984 32 233444555454433333322 111 257888 443211111 01112222211
Q ss_pred hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEE
Q 024744 117 RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 196 (263)
Q Consensus 117 ~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~ 196 (263)
....+|.+++-.+ ..++....... ..+.. . -++.++++||+|+.+..... .......+.++
T Consensus 71 ~~~~~d~vi~v~d-~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~------- 131 (158)
T cd01879 71 LGEKPDLIVNVVD-ATNLERNLYLT---LQLLE---L--GLPVVVALNMIDEAEKRGIK---IDLDKLSELLG------- 131 (158)
T ss_pred cCCCCcEEEEEee-CCcchhHHHHH---HHHHH---c--CCCEEEEEehhhhcccccch---hhHHHHHHhhC-------
Confidence 1147788777333 22332221111 11111 1 14589999999998764321 11221111111
Q ss_pred eecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 197 SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 197 ~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++++||.+|.|++++..++..
T Consensus 132 --------~~~~~iSa~~~~~~~~l~~~l~~ 154 (158)
T cd01879 132 --------VPVVPTSARKGEGIDELKDAIAE 154 (158)
T ss_pred --------CCeEEEEccCCCCHHHHHHHHHH
Confidence 14788999999999998887754
No 70
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.19 E-value=2.1e-10 Score=90.29 Aligned_cols=163 Identities=22% Similarity=0.295 Sum_probs=79.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----chhHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----KHSLVQA 110 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~~~~~~~ 110 (263)
|+++|.+|||||||+|.|++. .......+..+.|..... .... . -..++++ +|...... ...+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~---~~~~~~~~~~~~t~~~~~--~~~~--~--~~~~~D~-~g~~~~~~~~~~~~~~~~~ 71 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNR---KKLARTSKTPGKTQLINF--FNVN--D--KFRLVDL-PGYGYAKVSKEVKEKWGKL 71 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcC---CceeeecCCCCcceeEEE--EEcc--C--eEEEecC-CCccccccCHHHHHHHHHH
Confidence 689999999999999999942 122223333333222111 1111 1 1235666 44322211 1223334
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
+..........+.+++-...-.........+ ...+.. .. .+.++++||+|+.+.++.......+...++...
T Consensus 72 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~~l~~-~~----~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~- 143 (170)
T cd01876 72 IEEYLENRENLKGVVLLIDSRHGPTEIDLEM--LDWLEE-LG----IPFLVVLTKADKLKKSELAKALKEIKKELKLFE- 143 (170)
T ss_pred HHHHHHhChhhhEEEEEEEcCcCCCHhHHHH--HHHHHH-cC----CCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc-
Confidence 4444433345566655221111111111100 111111 12 347889999999765422111122222222111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+++++||+++.++.++.+++..
T Consensus 144 ------------~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 144 ------------IDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred ------------CCCceEEEecCCCCCHHHHHHHHHH
Confidence 2235789999999999999988754
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.19 E-value=5.8e-11 Score=93.65 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=78.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|++|||||||+++++... . ......+.+.+.. .+...+.... ..++++ +|. ..+.....
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~-~G~------~~~~~~~~ 67 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK----F---SEQYKSTIGVDFKTKTIEVDGKRVK-LQIWDT-AGQ------ERFRSITS 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----C---CCCCCCceeeEEEEEEEEECCEEEE-EEEEEC-CCh------HHHHHHHH
Confidence 6899999999999999998532 1 1111111111110 1111110011 235666 331 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-. ++.++..+.........+..... ..+|.++++||+|+.+..+. ..+...+..+..+ .
T Consensus 68 ~~~---~~~d~~ilv~-d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~ 137 (164)
T smart00175 68 SYY---RGAVGALLVY-DITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--L 137 (164)
T ss_pred HHh---CCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--C
Confidence 222 3578777722 34444443222111111111110 13669999999998764321 2333444333221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||.+|.|++++..++..
T Consensus 138 -------------~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 138 -------------PFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred -------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 3788999999999999887754
No 72
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.18 E-value=8.3e-11 Score=92.64 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=77.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
|+++|.+|||||||+++++.... ......+..|. ....... .... ..++|+ +|. ..+.......
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~--~~~~~~~t~g~----~~~~~~~--~~~~-~~l~Dt-~G~------~~~~~~~~~~ 65 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENA--QSQIIVPTVGF----NVESFEK--GNLS-FTAFDM-SGQ------GKYRGLWEHY 65 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCC--CcceecCcccc----ceEEEEE--CCEE-EEEEEC-CCC------HhhHHHHHHH
Confidence 67999999999999999985311 11112222221 1111111 1111 246777 442 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ...|.+++-.+ ..++..+... .++...+........-+|.++|+||+|+.+... ..++...+....
T Consensus 66 ~---~~~d~ii~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~l~~~~---- 133 (162)
T cd04157 66 Y---KNIQGIIFVID-SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT----AVKITQLLGLEN---- 133 (162)
T ss_pred H---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC----HHHHHHHhCCcc----
Confidence 2 46788877333 2333322111 011111111000011256999999999976431 233333332100
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+ ...+ -.++.+||++|.|++++.++|.
T Consensus 134 ~-----~~~~-~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 134 I-----KDKP-WHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred c-----cCce-EEEEEeeCCCCCchHHHHHHHh
Confidence 0 0001 1467899999999999998874
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.17 E-value=8.2e-11 Score=93.32 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=77.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|+|||||+++++... ... ...+..+.......+...+.... .+++|+ +|. ..+......
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~----~~~-~~~~t~~~~~~~~~~~~~~~~~~-~~i~D~-~G~------~~~~~~~~~ 70 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDT----YTE-SYISTIGVDFKIRTIELDGKTIK-LQIWDT-AGQ------ERFRTITSS 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCC-CCCCccceeEEEEEEEECCEEEE-EEEEEC-CCc------HhHHHHHHH
Confidence 36799999999999999998531 110 11111101111111111111111 245666 331 222222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ...|.+++-. ++.++..+.........+.... ....+.++|.||+|+...... ..++.....+.. ..
T Consensus 71 ~~---~~~~~ii~v~-d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~- 139 (166)
T cd01869 71 YY---RGAHGIIIVY-DVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVV--DYSEAQEFADEL--GI- 139 (166)
T ss_pred Hh---CcCCEEEEEE-ECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCC--CHHHHHHHHHHc--CC-
Confidence 22 3577777722 2344443322211111111111 012458899999998765422 123333322221 11
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++...+..
T Consensus 140 ------------~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 140 ------------PFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred ------------eEEEEECCCCcCHHHHHHHHHH
Confidence 4688999999999999877654
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.17 E-value=1.8e-10 Score=93.87 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=76.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|||||||++++..... ..-...+ + ...+. ..+...+... -..++|+ +|. ..+.....
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~----~~~~~~~-t-~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~ 68 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAF----LNGNFIA-T-VGIDFRNKVVTVDGVKV-KLQIWDT-AGQ------ERFRSVTH 68 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC----CccCcCC-c-ccceeEEEEEEECCEEE-EEEEEeC-CCc------HHHHHhhH
Confidence 67999999999999999985321 0000111 1 21111 1111111111 1245676 331 12222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ..+|.+++-. .+.++..+.+.......+..... ..+|.++|.||+|+...... ..++.....+..+
T Consensus 69 ~~~---~~ad~~i~v~-D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~--- 137 (191)
T cd04112 69 AYY---RDAHALLLLY-DITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVV--KREDGERLAKEYG--- 137 (191)
T ss_pred HHc---cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC---
Confidence 222 3567776622 23444333221111111221111 12568899999999754321 1222333222211
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+++.+||++|.|++++..++...
T Consensus 138 ------------~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 138 ------------VPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred ------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 146789999999999999888643
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.17 E-value=1.8e-10 Score=91.38 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=77.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|||||||++++.... . ......+.+.+.. .+...+... -..++|+ +|. ..+....
T Consensus 5 kv~vvG~~~~GKTsli~~l~~~~----~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~-~G~------~~~~~~~ 69 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSGT----F---SERQGNTIGVDFTMKTLEIEGKRV-KLQIWDT-AGQ------ERFRTIT 69 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhhCC----C---cccCCCccceEEEEEEEEECCEEE-EEEEEEC-CCh------HHHHHHH
Confidence 46789999999999999998431 1 1111111221111 111111001 1245666 331 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ...|.+++-. .+.++..+.........+... . ..-+|.++|.||+|+.+.... ..+...+..+..
T Consensus 70 ~~~~---~~~d~~llv~-d~~~~~s~~~~~~~~~~i~~~-~-~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~--- 138 (165)
T cd01864 70 QSYY---RSANGAIIAY-DITRRSSFESVPHWIEEVEKY-G-ASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKN--- 138 (165)
T ss_pred HHHh---ccCCEEEEEE-ECcCHHHHHhHHHHHHHHHHh-C-CCCCcEEEEEECccccccccc--CHHHHHHHHHHc---
Confidence 2222 3567777732 234443332211001111111 0 112458899999999765321 223333333322
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
....++++||++|.|++++..++..
T Consensus 139 -----------~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 139 -----------GMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred -----------CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 1224688999999999999887653
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.17 E-value=1.5e-10 Score=91.62 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=76.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+++++.. +... ...+..+.......+...+... -..++|+ +|. ..+......
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~----~~~~-~~~~t~~~~~~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~~ 71 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN----EFNL-DSKSTIGVEFATRSIQIDGKTI-KAQIWDT-AGQ------ERYRAITSA 71 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCCC-CCCCccceEEEEEEEEECCEEE-EEEEEeC-CCh------HHHHHHHHH
Confidence 4789999999999999999843 2110 0111110111111111111111 1246676 332 112222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ...+.+++- .++.++..+.........+.... ..-+|.++|.||+|+.+.... ..++..+..+.. ..
T Consensus 72 ~~---~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~- 140 (165)
T cd01868 72 YY---RGAVGALLV-YDITKKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKN--GL- 140 (165)
T ss_pred HH---CCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccC--CHHHHHHHHHHc--CC-
Confidence 22 345655552 23445544332211111111111 112568899999999764321 223333333221 11
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++.+++..
T Consensus 141 ------------~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 141 ------------SFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred ------------EEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999887654
No 77
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.16 E-value=1.3e-10 Score=90.51 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=75.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|||||||+|+|.+. +.. ....+ |.+.+...+..+ .. ...++++ +|. ..+.......
T Consensus 2 i~i~G~~~~GKssl~~~l~~~----~~~-~~~~~--t~~~~~~~~~~~--~~-~~~~~D~-~g~------~~~~~~~~~~ 64 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG----QFS-EDTIP--TVGFNMRKVTKG--NV-TLKVWDL-GGQ------PRFRSMWERY 64 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC----CCC-cCccC--CCCcceEEEEEC--CE-EEEEEEC-CCC------HhHHHHHHHH
Confidence 689999999999999999853 110 00011 122221112111 11 1245666 332 2233333333
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
+ ..+|.+++-.+ +.++..+.... .+...+... . ..-++.++|+||+|+.+... .+.+...+.. .. .
T Consensus 65 ~---~~~d~ii~v~d-~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~-~~-~- 131 (159)
T cd04159 65 C---RGVNAIVYVVD-AADRTALEAAKNELHDLLEKP-S-LEGIPLLVLGNKNDLPGALS----VDELIEQMNL-KS-I- 131 (159)
T ss_pred H---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHcCh-h-hcCCCEEEEEeCccccCCcC----HHHHHHHhCc-cc-c-
Confidence 3 35677776222 22332221110 111111110 0 01145889999999876532 2222222210 00 0
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. .....+.+|+++|.|++++..++.+
T Consensus 132 ------~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 132 ------TD-REVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ------cC-CceEEEEEEeccCCChHHHHHHHhh
Confidence 00 1124678999999999999888743
No 78
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.16 E-value=2.5e-10 Score=89.67 Aligned_cols=53 Identities=17% Similarity=0.052 Sum_probs=34.9
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|.||+|+.+... ..+...+..+..+ .+++.+||++|.|++++..++.+
T Consensus 107 ~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 107 VPMVLVGNKCDLAARTV---SSRQGQDLAKSYG---------------IPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred CCEEEEEECccccccee---cHHHHHHHHHHhC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 45899999999976431 1233333322221 13678999999999999887653
No 79
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.15 E-value=8.8e-11 Score=92.48 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=76.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||++++... +.. ...+ |.+.+...+.. .... ..++|+ +|. ..+.. +...
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~----~~~--~~~~--t~~~~~~~~~~--~~~~-~~i~Dt-~G~------~~~~~-~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLG----EVV--TTIP--TIGFNVETVTY--KNLK-FQVWDL-GGQ------TSIRP-YWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccC----CCc--CcCC--ccCcCeEEEEE--CCEE-EEEEEC-CCC------HHHHH-HHHH
Confidence 579999999999999999742 111 1111 12222111211 1111 256777 442 12222 2222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ...+|.+++-.+ ..++..+... ..+...+... ... -+|.++|+||+|+.+.. ...++.+.+......
T Consensus 63 ~--~~~~~~ii~v~d-~~~~~~~~~~~~~~~~~~~~~-~~~-~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~-- 131 (158)
T cd04151 63 Y--YSNTDAIIYVVD-STDRDRLGTAKEELHAMLEEE-ELK-GAVLLVFANKQDMPGAL----SEAEISEKLGLSELK-- 131 (158)
T ss_pred H--hcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hhc-CCcEEEEEeCCCCCCCC----CHHHHHHHhCccccC--
Confidence 1 246788777333 3333222110 0011111111 111 15699999999997543 123333333211000
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
... .+++++||++|.|++++.+++.
T Consensus 132 -------~~~-~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 132 -------DRT-WSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred -------CCc-EEEEEeeccCCCCHHHHHHHHh
Confidence 001 2578999999999999998874
No 80
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.15 E-value=1.6e-10 Score=89.65 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=36.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.+.++++||+|+.... ........+...+ ..+++++||.+|.|+.++.++|.
T Consensus 109 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~--------------~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 109 VPIILVGNKIDLRDAK----LKTHVAFLFAKLN--------------GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CcEEEEEEcccCCcch----hhHHHHHHHhhcc--------------CCceEEeecCCCCCHHHHHHHhh
Confidence 4589999999998653 1233344443332 23478999999999999988764
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.15 E-value=2.4e-10 Score=92.17 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=40.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEE-eecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~-~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.++++||+|+.++++.....+.+++.++...... .. .........+++++||++|.|++++..++..
T Consensus 115 ~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 115 LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS--TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc--hhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 458999999999875432122333333333221100 00 0001113456889999999999999888754
No 82
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=2.4e-10 Score=93.83 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=80.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcC-CCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEG-EGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~-~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
++++|.+|||||||+++++...- ......|.+.+.. .+... +.. ....+.|+ +|. ..+. .+
T Consensus 3 ivivG~~~vGKTsli~~l~~~~~-------~~~~~~t~~~d~~~~~v~~~~~~~-~~l~l~Dt-~G~------~~~~-~~ 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIF-------SQHYKATIGVDFALKVIEWDPNTV-VRLQLWDI-AGQ------ERFG-GM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCCC-------CCCCCCceeEEEEEEEEEECCCCE-EEEEEEEC-CCc------hhhh-hh
Confidence 67999999999999999985310 0111111222211 11111 111 11246677 332 1222 22
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceee--CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRL--DSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~--~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.... ...++.+++-. ++.++..+.........+...... ..-+|.++|.||+|+.+.... ..+++.+..+..+
T Consensus 67 ~~~~--~~~a~~~ilv~-D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~ 141 (201)
T cd04107 67 TRVY--YRGAVGAIIVF-DVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG 141 (201)
T ss_pred HHHH--hCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC
Confidence 2221 14677777733 345555443321111111111111 122568999999999743211 2344444444321
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...++.+||++|.|++++..++..
T Consensus 142 --------------~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 142 --------------FIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred --------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence 124678999999999999888764
No 83
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.15 E-value=1e-10 Score=93.67 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=78.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|++|||||||+++++.. .+....+. .+.....+... ... ..++|+ +|. ..+.....
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~----~~~~~~~t----~g~~~~~~~~~--~~~-l~l~D~-~G~------~~~~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE----DIDTISPT----LGFQIKTLEYE--GYK-LNIWDV-GGQ------KTLRPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC----CCCCcCCc----cccceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence 35789999999999999999843 22111111 22111111111 111 246777 332 12222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ...|.+++-.+ ..++..+.+. .++...+... .. ...+.++|+||+|+.+.. ..+++.+.++.....
T Consensus 77 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~ 146 (173)
T cd04154 77 NYF---ESTDALIWVVD-SSDRLRLDDCKRELKELLQEE-RL-AGATLLILANKQDLPGAL----SEEEIREALELDKIS 146 (173)
T ss_pred HHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEECcccccCC----CHHHHHHHhCccccC
Confidence 222 36677766333 3334332221 1111111111 11 125689999999997643 234444444321100
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
. ..-+++.+||++|.|++++.+++.
T Consensus 147 ~----------~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 147 S----------HHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred C----------CceEEEeccCCCCcCHHHHHHHHh
Confidence 0 112578999999999999988864
No 84
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.15 E-value=1.2e-10 Score=91.71 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=75.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||++++... +.. ...+ |.+.+...+.... . ....+.|+ +|. ..+.......
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~----~~~--~~~~--t~~~~~~~~~~~~-~-~~l~i~D~-~G~------~~~~~~~~~~ 64 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA----ELV--TTIP--TVGFNVEMLQLEK-H-LSLTVWDV-GGQ------EKMRTVWKCY 64 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC----Ccc--cccC--ccCcceEEEEeCC-c-eEEEEEEC-CCC------HhHHHHHHHH
Confidence 679999999999999999843 221 1111 1222221222111 1 11245666 332 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ...|.+++-.+ ..++..+.... ++...+... .. .-.|.++|+||+|+.+.. ..+.+...++. ....
T Consensus 65 ~---~~~~~iv~v~D-~~~~~~~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~i~~~~~~-~~~~- 132 (160)
T cd04156 65 L---ENTDGLVYVVD-SSDEARLDESQKELKHILKNE-HI-KGVPVVLLANKQDLPGAL----TAEEITRRFKL-KKYC- 132 (160)
T ss_pred h---ccCCEEEEEEE-CCcHHHHHHHHHHHHHHHhch-hh-cCCCEEEEEECcccccCc----CHHHHHHHcCC-cccC-
Confidence 2 35677777333 23333222111 111111111 00 125599999999986542 12333333211 0000
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.-..-+++++||++|+|++++..+|.
T Consensus 133 -------~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 133 -------SDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred -------CCCcEEEEecccccCCChHHHHHHHh
Confidence 00011477899999999999988763
No 85
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.15 E-value=1.2e-10 Score=92.60 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=37.2
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|+||+|+.++... ..+.++...+... ..+++.+||.+|.|++++.+++..
T Consensus 110 ~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 110 FPFVVLGNKIDLEEKRQV--STKKAQQWCQSNG--------------NIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred ceEEEEEECccccccccc--CHHHHHHHHHHcC--------------CceEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999853211 2344444443321 235788999999999999888764
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.15 E-value=3.4e-10 Score=88.86 Aligned_cols=157 Identities=19% Similarity=0.151 Sum_probs=76.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|+|||||+++++... ... .+.+..+.......+....... ...++|+ +| ...+ ..+...
T Consensus 3 i~i~G~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~-~g------~~~~-~~~~~~ 68 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK----FNE-KHESTTQASFFQKTVNIGGKRI-DLAIWDT-AG------QERY-HALGPI 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC-CcCCccceeEEEEEEEECCEEE-EEEEEEC-Cc------hHHH-HHhhHH
Confidence 6899999999999999998531 110 0111100111111111111111 1235565 32 1112 122222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
.. ...|.+++-.+ +.++..+.........+...... -++.++++||+|+...... ..+.+.+..+..+ .
T Consensus 69 ~~--~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~-- 137 (162)
T cd04123 69 YY--RDADGAILVYD-ITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--A-- 137 (162)
T ss_pred Hh--ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCC--CHHHHHHHHHHcC--C--
Confidence 21 35677766222 34444332221111122221111 2568999999999854322 1233344333321 1
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+|+++|.|++++.+++..
T Consensus 138 -----------~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 138 -----------KHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred -----------EEEEEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999988754
No 87
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.15 E-value=1.8e-10 Score=90.72 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=74.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+++++... . ......++.......+...+.. ....+.|+ +|. +.+. .+..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~----~--~~~~~~t~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~-~~~~ 67 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI----F--VEKYDPTIEDSYRKQIEVDGQQ-CMLEILDT-AGT------EQFT-AMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----C--CcccCCchhhhEEEEEEECCEE-EEEEEEEC-CCc------cccc-hHHH
Confidence 36799999999999999998531 1 0111111010000011111111 11245677 332 1121 2222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
..- ...|.+++-.+ +.++..+.........+...... .-+|.++|.||+|+.+.... ..+...+..+..+
T Consensus 68 ~~~--~~~~~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---- 137 (163)
T cd04136 68 LYI--KNGQGFVLVYS-ITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDERVV--SREEGQALARQWG---- 137 (163)
T ss_pred HHh--hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccee--cHHHHHHHHHHcC----
Confidence 221 24566555222 34444332221111112111111 12458899999998764321 1122222212111
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|+.++..++..
T Consensus 138 -----------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 138 -----------CPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred -----------CeEEEecCCCCCCHHHHHHHHHH
Confidence 24688999999999999887643
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.14 E-value=1.3e-10 Score=90.45 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=75.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc--hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE--RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d--~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|++|||||||+|++...... .. . ..|.+.+ ...+....... -..++++ +|. ..+.....
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~~----~~-~--~~t~~~~~~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~ 67 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFD----EN-Y--KSTIGVDFKSKTIEIDGKTV-KLQIWDT-AGQ------ERFRSITP 67 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC----Cc-c--CCceeeeeEEEEEEECCEEE-EEEEEec-CCh------HHHHHHHH
Confidence 689999999999999999854211 10 0 0011111 11111111011 1135566 332 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+..... ...+.++++||+|+..+... ..+.+++..+..
T Consensus 68 ~~~---~~~d~ii~v~d-~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~---- 135 (159)
T cd00154 68 SYY---RGAHGAILVYD-ITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQV--STEEAQQFAKEN---- 135 (159)
T ss_pred HHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccc--cHHHHHHHHHHc----
Confidence 222 35788777222 3333332221111111111110 12458999999999733321 234444433321
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
..+++.+||.+|.|++++..++.
T Consensus 136 -----------~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 136 -----------GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred -----------CCeEEEEecCCCCCHHHHHHHHh
Confidence 12478899999999999988763
No 89
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.14 E-value=3e-10 Score=90.44 Aligned_cols=157 Identities=19% Similarity=0.116 Sum_probs=77.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~-~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|.+|+|||||+++++.. +...... ..| .......+...+.... ..+.|+ +|. +.+.....
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~----~~~~~~~~t~~--~~~~~~~~~~~~~~~~-~~i~Dt-~G~------~~~~~~~~ 71 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDK----RFQPVHDLTIG--VEFGARMITIDGKQIK-LQIWDT-AGQ------ESFRSITR 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcC----CCCCCCCCccc--eeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHH
Confidence 4789999999999999999853 1111100 011 1111111111111111 245666 331 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++-.+ +.++..+.........+.... ..-++.++|.||+|+.+.... ..++.+...+.. .+
T Consensus 72 ~~~---~~~d~il~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~ 141 (168)
T cd01866 72 SYY---RGAAGALLVYD-ITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEH--GL 141 (168)
T ss_pred HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCC--CHHHHHHHHHHc--CC
Confidence 222 46788777332 344444332211111111110 012558999999999854321 223333333322 11
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++++||.+|+|++++..++..
T Consensus 142 -------------~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 142 -------------IFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 3688999999999998877654
No 90
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.13 E-value=2e-10 Score=90.02 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=77.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|||||||+++++... .......++...........+ ......++++ +|. ..........
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~-~g~------~~~~~~~~~~ 67 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT------FVEEYDPTIEDSYRKTIVVDG-ETYTLDILDT-AGQ------EEFSAMRDLY 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC------CCcCcCCChhHeEEEEEEECC-EEEEEEEEEC-CCh------HHHHHHHHHH
Confidence 6899999999999999998531 111111111110000011110 0011234555 321 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
. ...|.+++-. .+.++..+.+.......+..... ....+.++++||+|+.+.... ..+......+..+
T Consensus 68 ~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~----- 135 (160)
T cd00876 68 I---RQGDGFILVY-SITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG----- 135 (160)
T ss_pred H---hcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCccccccee--cHHHHHHHHHHcC-----
Confidence 2 3567777622 23444433222111111111111 012558999999999874321 2334444444332
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+|+.+|.|++++..++..
T Consensus 136 ----------~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 136 ----------CPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred ----------CcEEEeccCCCCCHHHHHHHHHh
Confidence 24678999999999999887643
No 91
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.13 E-value=1.3e-10 Score=91.60 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=75.8
Q ss_pred EEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|+|||||+++++.... ... ....+ .......+...+... -..++|+ +|. ..+......
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~-~l~l~D~-~G~------~~~~~~~~~ 68 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKEDS----QHTIG--VEFGSKIIRVGGKRV-KLQIWDT-AGQ------ERFRSVTRS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCC----CCcee--eeEEEEEEEECCEEE-EEEEEEC-cch------HHHHHhHHH
Confidence 67999999999999999985321 000 00001 001111111111111 1246666 432 222222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ...|.+++-. .+.++..+.........+.... ..-++.++|.||+|+...... ..+......+..+
T Consensus 69 ~~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---- 136 (161)
T cd04113 69 YY---RGAAGALLVY-DITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREV--TFLEASRFAQENG---- 136 (161)
T ss_pred Hh---cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC----
Confidence 22 3567777722 2333333222111001111111 112568999999999764321 2233444443322
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
-+++.+||++|.|++++..++.
T Consensus 137 -----------~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 137 -----------LLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred -----------CEEEEEECCCCCCHHHHHHHHH
Confidence 1478899999999999988764
No 92
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.13 E-value=1.9e-10 Score=90.45 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=78.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||+++++... ..-... |.+.....+... . ....++|+ +|. ..+.......
T Consensus 2 i~iiG~~~~GKssli~~~~~~~----~~~~~~----t~~~~~~~~~~~--~-~~~~i~D~-~G~------~~~~~~~~~~ 63 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE----VVTTIP----TIGFNVETVEYK--N-VSFTVWDV-GGQ------DKIRPLWKHY 63 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----CCCCCC----CcCcceEEEEEC--C-EEEEEEEC-CCC------hhhHHHHHHH
Confidence 6899999999999999999532 110011 122111111111 1 11256777 442 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
+ ...|.+++- ....++..+.... ++...+... . ..-.+.++++||+|+.... ..+++.+.++......
T Consensus 64 ~---~~~~~~i~v-~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~- 132 (158)
T cd00878 64 Y---ENTNGIIFV-VDSSDRERIEEAKEELHKLLNEE-E-LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILG- 132 (158)
T ss_pred h---ccCCEEEEE-EECCCHHHHHHHHHHHHHHHhCc-c-cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccC-
Confidence 2 356777772 2233332222111 001111111 1 1124589999999998654 2345555544321110
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
...+++.+||++|.|++++..+|.
T Consensus 133 ---------~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 133 ---------RRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred ---------CcEEEEEeeCCCCCCHHHHHHHHh
Confidence 122578899999999999988764
No 93
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.13 E-value=2e-10 Score=90.70 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=76.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++..... . ....|.+.+.. .+...+... ...++++ +|- +.+.....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~~ 67 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFV------S-KYLPTIGIDYGVKKVSVRNKEV-RVNFFDL-SGH------PEYLEVRN 67 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC------C-CCCCccceeEEEEEEEECCeEE-EEEEEEC-Ccc------HHHHHHHH
Confidence 689999999999999999954210 0 11111222211 111111111 1245666 321 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee---eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR---LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~---~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
... ..+|.+++-. ++.++..+.........+..... .....+.++|.||+|+.+.... ..+..+...+..+
T Consensus 68 ~~~---~~~d~~ilv~-D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 141 (168)
T cd04119 68 EFY---KDTQGVLLVY-DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG 141 (168)
T ss_pred HHh---ccCCEEEEEE-ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC
Confidence 222 3567777732 23444333221111111111111 0112568999999999743211 1233333333221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 142 --~-------------~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 142 --F-------------KYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred --C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence 1 3678999999999999887643
No 94
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.13 E-value=1.6e-10 Score=93.71 Aligned_cols=164 Identities=19% Similarity=0.156 Sum_probs=82.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|||||||++++.. .++....+. .+.....+... ... ..++|+ +|. ........
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~----~~~~~~~~t----~~~~~~~~~~~--~~~-~~~~D~-~G~------~~~~~~~~ 79 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKN----DRLAQHQPT----QHPTSEELAIG--NIK-FTTFDL-GGH------QQARRLWK 79 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhc----CCCcccCCc----cccceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence 4678999999999999999984 333221111 22111111111 111 245676 442 11222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.. ....|.+++-.+ ..++..+.... .+...+.. .... -+|.++|+||+|+.... ..+++++.+.-....
T Consensus 80 ~~---~~~ad~ii~vvD-~~~~~~~~~~~~~l~~l~~~-~~~~-~~piliv~NK~Dl~~~~----~~~~i~~~l~l~~~~ 149 (184)
T smart00178 80 DY---FPEVNGIVYLVD-AYDKERFAESKRELDALLSD-EELA-TVPFLILGNKIDAPYAA----SEDELRYALGLTNTT 149 (184)
T ss_pred HH---hCCCCEEEEEEE-CCcHHHHHHHHHHHHHHHcC-hhhc-CCCEEEEEeCccccCCC----CHHHHHHHcCCCccc
Confidence 22 246788777333 34444332211 11111111 0111 14599999999986532 235555554311100
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
... .........++++||++|.|++++.+||..
T Consensus 150 ~~~---~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 150 GSK---GKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccc---cccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 000 000112346899999999999999999854
No 95
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.12 E-value=2.1e-10 Score=94.10 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|+|||||+++++.. ++ ......|.+.+... +...+... ...++|+ +|. ..+...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~----~~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~D~-~G~------~~~~~~ 71 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN----TF---SGSYITTIGVDFKIRTVEINGERV-KLQIWDT-AGQ------ERFRTI 71 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC----CC---CCCcCccccceeEEEEEEECCEEE-EEEEEeC-CCc------hhHHHH
Confidence 35789999999999999999843 11 01111112222111 11111111 1245676 331 112222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
..... ...+.+++ +.++.++..+.........+... ....+.+||.||+|+.+.... ..+......+..+
T Consensus 72 ~~~~~---~~a~~iil-v~D~~~~~s~~~~~~~~~~i~~~---~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~- 141 (199)
T cd04110 72 TSTYY---RGTHGVIV-VYDVTNGESFVNVKRWLQEIEQN---CDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG- 141 (199)
T ss_pred HHHHh---CCCcEEEE-EEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccccccc--CHHHHHHHHHHcC-
Confidence 22222 35676666 23344554433221111111111 112457899999999765321 1233333333221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++..++..
T Consensus 142 --------------~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 142 --------------ISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred --------------CEEEEEECCCCcCHHHHHHHHHH
Confidence 14788999999999999988764
No 96
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.12 E-value=4e-10 Score=88.73 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=36.0
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|+||+|+.+..+ .......+..+..+ . +++.+||++|.|++++..++..
T Consensus 106 ~piiiv~NK~D~~~~~~--~~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 106 VPLLLVGNKCDLEDKRQ--VSSEEAANLARQWG--V-------------PYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCEEEEEEccccccccc--cCHHHHHHHHHHhC--C-------------eEEEeeCCCCCCHHHHHHHHHH
Confidence 55899999999976321 12233333333221 1 4688999999999999988754
No 97
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.12 E-value=2.4e-10 Score=90.18 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=76.8
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEE-EecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAV-ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~i-i~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|++|||||||+|+++... ... .....|. ......+........ ..++|+ +|. ..+.. +..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~--~~~~~~v~~~~~~~~-~~i~D~-~G~------~~~~~-~~~ 68 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE----FSENQESTIGA--AFLTQTVNLDDTTVK-FEIWDT-AGQ------ERYRS-LAP 68 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCCCCCCccce--eEEEEEEEECCEEEE-EEEEeC-Cch------HHHHH-HHH
Confidence 6799999999999999999542 110 0111111 011111111111111 135565 331 11222 222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
... ...|.+++- .+..++..+.........+..... ..++.++++||+|+.+.... ..+...+..+..+
T Consensus 69 ~~~--~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---- 137 (163)
T cd01860 69 MYY--RGAAAAIVV-YDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQV--STEEAQEYADENG---- 137 (163)
T ss_pred HHh--ccCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcC--CHHHHHHHHHHcC----
Confidence 221 356777662 223344433222111111211111 12558889999998754321 2334444443322
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++++||++|.|+.++.+++..
T Consensus 138 -----------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 138 -----------LLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred -----------CEEEEEECCCCCCHHHHHHHHHH
Confidence 14688999999999999988754
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.12 E-value=3.4e-10 Score=89.27 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=75.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|+|||||+++++... . ......++...-.......+... ...++|+ +|. .++......
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~----~--~~~~~~t~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~~ 69 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSY----F--VTDYDPTIEDSYTKQCEIDGQWA-ILDILDT-AGQ------EEFSAMREQ 69 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC----C--CcccCCCccceEEEEEEECCEEE-EEEEEEC-CCC------cchhHHHHH
Confidence 36899999999999999998431 1 11111111100000001111111 1245677 332 223333333
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
... ..|.+++-. .+.++..+.........+.... ...-+|.++++||+|+.+.... ..+...+..+..
T Consensus 70 ~~~---~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~~~~~~----- 137 (164)
T cd04145 70 YMR---TGEGFLLVF-SVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKV--SREEGQELARKL----- 137 (164)
T ss_pred HHh---hCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCcccccccee--cHHHHHHHHHHc-----
Confidence 332 345555522 2334433222111011111110 0112458999999999765321 122333333321
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .+++.+||++|.|++++..++..
T Consensus 138 ---------~-~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 138 ---------K-IPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred ---------C-CcEEEeeCCCCCCHHHHHHHHHH
Confidence 1 14688999999999999877643
No 99
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.12 E-value=3e-10 Score=89.74 Aligned_cols=54 Identities=22% Similarity=0.122 Sum_probs=35.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.|.++|.||+|+.+.... ..+...+..+..+ .+.+.+||++|.|++++.+++..
T Consensus 106 ~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 106 VPIVLVGNKCDLESERVV--STEEGKELARQWG---------------CPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCEEEEEECccccccceE--cHHHHHHHHHHcC---------------CEEEEeecCCCCCHHHHHHHHHH
Confidence 458899999999764321 1223333333221 14688999999999999887754
No 100
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.11 E-value=3.4e-10 Score=89.58 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=74.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|||||||+++++... .......+ .... ...+...+ ......+.|+ +|. ..+. .+..
T Consensus 4 i~~~G~~~~GKTsli~~~~~~~------~~~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~-~~~~ 67 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGI------FVEKYDPT-IEDSYRKQVEVDG-QQCMLEILDT-AGT------EQFT-AMRD 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCC------CCcccCCc-chheEEEEEEECC-EEEEEEEEEC-CCc------ccch-hHHH
Confidence 6799999999999999998421 11111122 1110 00111111 1111246677 432 1122 2222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
..- ...|.+++-.+ +.++..+.........+..... ..-+|.++|.||+|+.+.... ..+...+..+..+
T Consensus 68 ~~~--~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~---- 137 (164)
T cd04175 68 LYM--KNGQGFVLVYS-ITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWG---- 137 (164)
T ss_pred HHH--hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEE--cHHHHHHHHHHhC----
Confidence 221 24555555222 3344333221111111111111 112568999999999764321 1222222222221
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++..++..
T Consensus 138 -----------~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 138 -----------CAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred -----------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 13678999999999999888753
No 101
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.11 E-value=6.7e-10 Score=86.13 Aligned_cols=157 Identities=22% Similarity=0.183 Sum_probs=78.0
Q ss_pred EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-chhHHHHHHHHH
Q 024744 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-KHSLVQALEQLV 115 (263)
Q Consensus 37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~l~~~~ 115 (263)
|+|++|||||||+|+|+. ..........+.+............ .. -..++|+ +|...... ............
T Consensus 1 i~G~~gsGKstl~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~Dt-~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLG----QEVAIVSPVPGTTTDPVEYVWELGP-LG-PVVLIDT-PGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhC----ccccccCCCCCcEECCeEEEEEecC-CC-cEEEEEC-CCCCccccchhhHHHHHHHHH
Confidence 589999999999999984 3333334444433222221111110 11 1246777 44321111 111112222232
Q ss_pred HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH---HHHhhcCCC
Q 024744 116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK---EIHEINSLA 192 (263)
Q Consensus 116 ~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~---~l~~~~p~~ 192 (263)
..+|.+++-.+... +......... .... ...++.++++||+|+....+ ...... ......
T Consensus 74 ---~~~d~il~v~~~~~-~~~~~~~~~~-~~~~-----~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~--- 136 (163)
T cd00880 74 ---ERADLILFVVDADL-RADEEEEKLL-ELLR-----ERGKPVLLVLNKIDLLPEEE----EEELLELRLLILLLL--- 136 (163)
T ss_pred ---HhCCEEEEEEeCCC-CCCHHHHHHH-HHHH-----hcCCeEEEEEEccccCChhh----HHHHHHHHHhhcccc---
Confidence 36788777333322 2211111100 0000 11245899999999987642 122211 111111
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+++.+||.++.|+.++.+++..
T Consensus 137 ----------~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 137 ----------LGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred ----------cCCceEEEeeeccCCHHHHHHHHHh
Confidence 2346788999999999999887653
No 102
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.11 E-value=2.2e-10 Score=91.86 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=76.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|+|||||++++.... ..-..+. .+.+....... ... ..++|+ +|. ..+......
T Consensus 17 kv~~~G~~~~GKTsl~~~l~~~~----~~~~~~t----~~~~~~~~~~~--~~~-~~l~D~-~G~------~~~~~~~~~ 78 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGE----VVHTSPT----IGSNVEEIVYK--NIR-FLMWDI-GGQ------ESLRSSWNT 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHccCC----CCCcCCc----cccceEEEEEC--CeE-EEEEEC-CCC------HHHHHHHHH
Confidence 57799999999999999998431 1101111 22111111111 111 245676 442 122222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ...|.+++-.+ ..++..+.... .+...+... .. ..+|.++++||+|+.+.. ..+++.+.+.... +
T Consensus 79 ~~---~~~d~vi~V~D-~s~~~~~~~~~~~l~~~~~~~-~~-~~~p~viv~NK~Dl~~~~----~~~~i~~~l~~~~--~ 146 (174)
T cd04153 79 YY---TNTDAVILVID-STDRERLPLTKEELYKMLAHE-DL-RKAVLLVLANKQDLKGAM----TPAEISESLGLTS--I 146 (174)
T ss_pred Hh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-cCCCEEEEEECCCCCCCC----CHHHHHHHhCccc--c
Confidence 22 36788777333 33333221110 011111111 01 114589999999987532 1234444332110 0
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
. .. . -.++++||++|.|++++.++|.
T Consensus 147 ~-----~~--~-~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 R-----DH--T-WHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred c-----CC--c-eEEEecccCCCCCHHHHHHHHh
Confidence 0 00 1 1467899999999999998874
No 103
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.11 E-value=1.8e-10 Score=91.93 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|++|||||||++++.+. ......+..| .....+... +.. ..++++ +|. ..+....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~----~~~~~~~t~g----~~~~~i~~~--~~~-~~~~D~-~G~------~~~~~~~ 75 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE----DISHITPTQG----FNIKTVQSD--GFK-LNVWDI-GGQ------RAIRPYW 75 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC----CCcccCCCCC----cceEEEEEC--CEE-EEEEEC-CCC------HHHHHHH
Confidence 346899999999999999999843 2111112122 111111111 111 134555 331 1222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
...+ ..+|.+++-.+ ..++..+.... .....+... . ..-+|.++++||+|+.+... .+.+.+.++ +..
T Consensus 76 ~~~~---~~~~~ii~v~D-~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~ivv~nK~D~~~~~~----~~~i~~~l~-~~~ 144 (173)
T cd04155 76 RNYF---ENTDCLIYVID-SADKKRLEEAGAELVELLEEE-K-LAGVPVLVFANKQDLATAAP----AEEIAEALN-LHD 144 (173)
T ss_pred HHHh---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCh-h-hcCCCEEEEEECCCCccCCC----HHHHHHHcC-Ccc
Confidence 2222 35676666332 23332221111 111111111 0 01155889999999976542 234433332 110
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. . ..-.++.+||++|+|++++.+|+.
T Consensus 145 ~~-------~--~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 145 LR-------D--RTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred cC-------C--CeEEEEEeECCCCCCHHHHHHHHh
Confidence 00 0 011356899999999999998874
No 104
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.11 E-value=1.9e-10 Score=93.52 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=82.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCC-CeEE-------EEecC-----CCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIA-------VILNE-----FGEEIGVERAMINEGEGGALVEEWVELANG 97 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~-~~~~-------ii~~~-----~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (263)
.+..|+++|..++|||||+++|+..... .+.+ ..... .+.|.......... ........++|+ ||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-~~~~~~i~~iDt-PG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-NENNRKITLIDT-PG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-TESSEEEEEEEE-SS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-cccccceeeccc-cc
Confidence 3568999999999999999999853110 0000 00000 01001000000110 001111256777 44
Q ss_pred ceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744 98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDS 177 (263)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~ 177 (263)
- .++...+... ...+|.+++-.++...+........ ..+ .... ++.++++||+|+... .
T Consensus 80 ~------~~f~~~~~~~---~~~~D~ailvVda~~g~~~~~~~~l--~~~-~~~~----~p~ivvlNK~D~~~~-----~ 138 (188)
T PF00009_consen 80 H------EDFIKEMIRG---LRQADIAILVVDANDGIQPQTEEHL--KIL-RELG----IPIIVVLNKMDLIEK-----E 138 (188)
T ss_dssp S------HHHHHHHHHH---HTTSSEEEEEEETTTBSTHHHHHHH--HHH-HHTT-----SEEEEEETCTSSHH-----H
T ss_pred c------cceeecccce---ecccccceeeeeccccccccccccc--ccc-cccc----cceEEeeeeccchhh-----h
Confidence 2 3343333333 3477888775544433333211111 111 1112 348999999999832 2
Q ss_pred HHHHHHHHH-hh---cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 178 LDELEKEIH-EI---NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 178 ~~~~~~~l~-~~---~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+++..+.++ .+ .... .-..-+++++||.+|.|++.|.+.+..+
T Consensus 139 ~~~~~~~~~~~l~~~~~~~--------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 139 LEEIIEEIKEKLLKEYGEN--------GEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp HHHHHHHHHHHHHHHTTST--------TTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccC--------ccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 333333333 11 1110 0013468999999999999999888654
No 105
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.11 E-value=2.2e-10 Score=90.24 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=76.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcC--CCCcceeeeeeecCcceEeecchhHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEG--EGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
++++|.+|+|||||++++..... ..+...|.+.+.. .+... .... -..++|+ +|. ..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~i~D~-~G~------~~~~~~ 67 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIF-------TKDYKKTIGVDFLEKQIFLRQSDEDV-RLMLWDT-AGQ------EEFDAI 67 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-------CCCCCCcEEEEEEEEEEEEcCCCCEE-EEEEeeC-Cch------HHHHHh
Confidence 68999999999999999985311 0010111211110 01000 1111 1245676 331 222222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
..... ...|.+++-.+ +.++..+.........+... ..-+|.++|+||+|+.+.... ..++.....+..+
T Consensus 68 ~~~~~---~~~~~~v~v~d-~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v--~~~~~~~~~~~~~- 137 (162)
T cd04106 68 TKAYY---RGAQACILVFS-TTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVI--TNEEAEALAKRLQ- 137 (162)
T ss_pred HHHHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCC--CHHHHHHHHHHcC-
Confidence 22222 35666666332 34444332211111111111 012558999999999765432 1233333333221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++++||++|.|++++.+++..
T Consensus 138 -~-------------~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 138 -L-------------PLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred -C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence 1 3678999999999999887753
No 106
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.10 E-value=1.4e-10 Score=109.70 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=82.8
Q ss_pred ccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHHHHHHHHHHh
Q 024744 39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQALEQLVQR 117 (263)
Q Consensus 39 G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~~~l~~~~~~ 117 (263)
|.||+|||||+|++++ .+. .+.+.+|+|++.....+..++ .. ..++|+ +|..- .... ..+.+.+....
T Consensus 1 G~pNvGKSSL~N~Ltg----~~~-~v~n~pG~Tv~~~~~~i~~~~--~~-i~lvDt-PG~~~~~~~s--~~e~v~~~~l~ 69 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG----ANQ-TVGNWPGVTVEKKEGKLGFQG--ED-IEIVDL-PGIYSLTTFS--LEEEVARDYLL 69 (591)
T ss_pred CCCCCCHHHHHHHHhC----CCC-eecCCCCeEEEEEEEEEEECC--eE-EEEEEC-CCccccCccc--hHHHHHHHHHh
Confidence 8999999999999994 332 467778876655443333322 11 257888 55321 1111 11122221112
Q ss_pred ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEe
Q 024744 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 197 (263)
Q Consensus 118 ~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~ 197 (263)
...+|.++. +.|............++.+ ..++.++++||+|+.+......+. +.+.+...
T Consensus 70 ~~~aDvvI~----VvDat~ler~l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~----~~L~~~lg------- 129 (591)
T TIGR00437 70 NEKPDLVVN----VVDASNLERNLYLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDE----EKLEERLG------- 129 (591)
T ss_pred hcCCCEEEE----EecCCcchhhHHHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhH----HHHHHHcC-------
Confidence 346898888 4443332111111111111 114589999999987654321111 22222211
Q ss_pred ecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 198 VRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 198 ~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++++||++|+|++++.+.+.+
T Consensus 130 -------~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 130 -------VPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHH
Confidence 14788999999999999988764
No 107
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.10 E-value=4.8e-10 Score=88.98 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=76.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|||||||+++++...... ...+ |.+.+. ..+...+.... ..++|+ +|. ..+.. +.
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~~-~~l~Dt-~g~------~~~~~-~~ 67 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTS-----AFVS--TVGIDFKVKTVFRNDKRVK-LQIWDT-AGQ------ERYRT-IT 67 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----CCCC--ceeeEEEEEEEEECCEEEE-EEEEEC-CCh------HHHHH-HH
Confidence 6899999999999999999542100 0001 111111 01111111111 245676 331 12221 22
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ....|.+++..+ +.++..+.........+.... ....+.++|.||+|+.+.... ..++..+..+.+
T Consensus 68 ~~~--~~~~~~~l~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~---- 136 (165)
T cd01865 68 TAY--YRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVV--SSERGRQLADQL---- 136 (165)
T ss_pred HHH--ccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCccccc--CHHHHHHHHHHc----
Confidence 111 246677766333 344444332211111121111 112458999999999765321 122222222221
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+. +++.+||++|.|++++.+++..
T Consensus 137 ----------~~-~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 137 ----------GF-EFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ----------CC-EEEEEECCCCCCHHHHHHHHHH
Confidence 11 3678999999999999888754
No 108
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.10 E-value=6.1e-10 Score=88.53 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=77.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|+|||||++++.... . ......|.+.+. ..+...+... ...+.|++ | ...+....
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~----f---~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~D~~-g------~~~~~~~~ 69 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDS----F---NPSFISTIGIDFKIRTIELDGKKI-KLQIWDTA-G------QERFRTIT 69 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCc----C---CcccccCccceEEEEEEEECCEEE-EEEEEeCC-c------hHHHHHHH
Confidence 47899999999999999998431 1 001011111111 1111111111 12355653 2 12222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
...+ ..+|.+++-.+ +.++..+.........+... ...-.+.++|.||+|+.+.... ..++..+..+...
T Consensus 70 ~~~~---~~ad~~i~v~d-~~~~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 139 (167)
T cd01867 70 TAYY---RGAMGIILVYD-ITDEKSFENIRNWMRNIEEH--ASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG-- 139 (167)
T ss_pred HHHh---CCCCEEEEEEE-CcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--
Confidence 2222 36788777332 34444432221111111111 0112458999999999864321 2233333333221
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.+.+||++|.|++++..++..
T Consensus 140 -------------~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 140 -------------IKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred -------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 13688999999999999877654
No 109
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.10 E-value=2.9e-10 Score=92.31 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=78.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|++|||||||++++... +... ..+ |.+.....+... +.. ..++++ +|. ........
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~----~~~~--~~~--T~~~~~~~i~~~--~~~-~~l~D~-~G~------~~~~~~~~ 81 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD----RLAQ--HVP--TLHPTSEELTIG--NIK-FKTFDL-GGH------EQARRLWK 81 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----CCcc--cCC--ccCcceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence 45699999999999999999843 2111 111 122111111111 111 134565 331 11111112
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ...|.+++-.+ ..++..+.... ++...+... .. .-.|.++++||+|+.... ..+++++.++.....
T Consensus 82 ~~~---~~ad~iilV~D-~~~~~s~~~~~~~~~~i~~~~-~~-~~~pvivv~NK~Dl~~~~----~~~~~~~~~~~~~~~ 151 (190)
T cd00879 82 DYF---PEVDGIVFLVD-AADPERFQESKEELDSLLSDE-EL-ANVPFLILGNKIDLPGAV----SEEELRQALGLYGTT 151 (190)
T ss_pred HHh---ccCCEEEEEEE-CCcHHHHHHHHHHHHHHHcCc-cc-cCCCEEEEEeCCCCCCCc----CHHHHHHHhCccccc
Confidence 221 35677766333 23332221111 111111110 11 114589999999987542 235555555421100
Q ss_pred C-eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 A-HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~-~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.........-.++.+||++|+|++++..|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 0 00000000001124788999999999999998864
No 110
>PLN03118 Rab family protein; Provisional
Probab=99.10 E-value=4.8e-10 Score=92.84 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=76.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++|+|.+|+|||||+++++.. ++.......|. ......+...+... -..++|+ +|. ..+......
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~----~~~~~~~t~~~--~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~~~ 81 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISS----SVEDLAPTIGV--DFKIKQLTVGGKRL-KLTIWDT-AGQ------ERFRTLTSS 81 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhC----CCCCcCCCcee--EEEEEEEEECCEEE-EEEEEEC-CCc------hhhHHHHHH
Confidence 3679999999999999999843 22111111111 11111111111111 1246777 332 222222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhh-cccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ...|.+++- .++.++..+..... ....+... ......+.++|.||+|+...... ..+......+.. ..
T Consensus 82 ~~---~~~d~~vlv-~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~i--~~~~~~~~~~~~--~~ 152 (211)
T PLN03118 82 YY---RNAQGIILV-YDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERDV--SREEGMALAKEH--GC 152 (211)
T ss_pred HH---hcCCEEEEE-EECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHc--CC
Confidence 22 356776662 33445444332210 01111110 00111347889999999765322 122222222221 11
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 153 -------------~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 153 -------------LFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 3678999999999999988764
No 111
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.09 E-value=7.8e-10 Score=91.86 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=79.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++...-. .....|.+.+.. .+...+.......+.|+ +| ...+.....
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~~~-------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt-~G------~~~~~~l~~ 68 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGFG-------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDI-GG------QSIGGKMLD 68 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCCCC-------CCCCCceeEEEEEEEEEeCCCCEEEEEEEEC-CC------cHHHHHHHH
Confidence 679999999999999999853110 011111222211 11111111111246676 33 122222233
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceee-CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRL-DSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ..+|.+++-.+ +.++..+.........+...... ....+.++|.||+|+.+.... ..+...+..+.. .
T Consensus 69 ~~~---~~ad~iilV~D-~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~-~- 140 (215)
T cd04109 69 KYI---YGAHAVFLVYD-VTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQAN-G- 140 (215)
T ss_pred HHh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHc-C-
Confidence 332 36788777333 45554443221111122221110 112347889999999754321 122233322221 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. ..+.+||++|+|++++.+++...
T Consensus 141 ~-------------~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 141 M-------------ESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred C-------------EEEEEECCCCCCHHHHHHHHHHH
Confidence 1 35678999999999999887753
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.09 E-value=8.9e-10 Score=89.15 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=76.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhc---CCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINE---GEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~---~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
++++|.+|||||||+++++... . ....+ + .+.+...... ...... ..++|+ +|. +.+....
T Consensus 6 v~~vG~~~~GKTsli~~~~~~~----~--~~~~~-t-~~~~~~~~~~~~~~~~~~~-l~l~Dt-~G~------~~~~~~~ 69 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNE----F--VNTVP-T-KGFNTEKIKVSLGNSKGIT-FHFWDV-GGQ------EKLRPLW 69 (183)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----c--CCcCC-c-cccceeEEEeeccCCCceE-EEEEEC-CCc------HhHHHHH
Confidence 6789999999999999998431 1 11111 1 1111111111 111111 246777 332 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ...|.+++-.+ ..++..+.........+...... .-+|.++|+||+|+.+.. ..+.+...+. ++..
T Consensus 70 ~~~~---~~~d~ii~v~D-~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~----~~~~~~~~~~-~~~~ 139 (183)
T cd04152 70 KSYT---RCTDGIVFVVD-SVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNAL----SVSEVEKLLA-LHEL 139 (183)
T ss_pred HHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccC----CHHHHHHHhC-cccc
Confidence 2221 35777777333 33333322211100111111111 125699999999986532 1233333322 1110
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ......++++||++|.|++++..++..
T Consensus 140 ~--------~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 140 S--------ASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred C--------CCCceEEEEeecccCCCHHHHHHHHHH
Confidence 0 001124678999999999999887653
No 113
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.09 E-value=6.4e-10 Score=87.59 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=77.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|++|||||||+++++...... -..+..+.+. ....+....... -..++|+ +|- ..+.......
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~~~ 69 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTFDP---DLAATIGVDF--KVKTLTVDGKKV-KLAIWDT-AGQ------ERFRTLTSSY 69 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCc---ccCCcccceE--EEEEEEECCEEE-EEEEEEC-CCc------hhhhhhhHHH
Confidence 6899999999999999998532110 0111122111 100111111111 1245666 331 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
+ ...|.+++-.+ +.++..+.........+..... ....+.++|.||+|+..... ..+...+..+.. .+
T Consensus 70 ~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~--~~-- 137 (161)
T cd01863 70 Y---RGAQGVILVYD-VTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREV---TREEGLKFARKH--NM-- 137 (161)
T ss_pred h---CCCCEEEEEEE-CCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccccccc---CHHHHHHHHHHc--CC--
Confidence 2 35777777333 4444443222111111111111 11245889999999984431 223333433322 12
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.++.+||++|.|++++.+.+.
T Consensus 138 -----------~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 138 -----------LFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred -----------EEEEEecCCCCCHHHHHHHHH
Confidence 368899999999999887654
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.09 E-value=7.2e-10 Score=88.00 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..-++++|.+|+|||||+++++... .....+.+.+.+.. .+...+... ...+.++ +|- ..+..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~D~-~g~------~~~~~ 71 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-------FPPGQGATIGVDFMIKTVEIKGEKI-KLQIWDT-AGQ------ERFRS 71 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCceeeEEEEEEEEECCEEE-EEEEEEC-CCc------HHHHH
Confidence 3678999999999999999998431 01111111211110 011111011 1134565 221 12222
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+ ...|.+++-.+ +.++..+.........+..... .-++.++|.||+|+.+..+. .......+....
T Consensus 72 ~~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i---~~~~~~~~~~~~ 142 (169)
T cd04114 72 ITQSYY---RSANALILTYD-ITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREV---SQQRAEEFSDAQ 142 (169)
T ss_pred HHHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccc---CHHHHHHHHHHc
Confidence 223332 35677666222 3333322111111111221111 11457899999999765422 122333333332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ..++.+||++|.|++++..++..
T Consensus 143 ~--------------~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 143 D--------------MYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred C--------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence 2 24678999999999999887754
No 115
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=2.7e-10 Score=90.99 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=77.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||++++.... .. ...+ + .+.+...+.. .... ..++|+ +|. ..+.. +..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~----~~--~~~~-t-~g~~~~~~~~--~~~~-~~l~Dt-~G~------~~~~~-~~~ 71 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQ----SV--TTIP-T-VGFNVETVTY--KNVK-FNVWDV-GGQ------DKIRP-LWR 71 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCC----Cc--cccC-C-cccceEEEEE--CCEE-EEEEEC-CCC------HHHHH-HHH
Confidence 57799999999999999997421 11 1111 1 2222211111 1111 256777 442 12222 222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh--hcC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE--INS 190 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~--~~p 190 (263)
.. ...+|.+++-.+ +.++..+.+.. ++...+... ... -.+.++|.||+|+.+.. ..+++.+.++. .++
T Consensus 72 ~~--~~~a~~ii~v~D-~t~~~s~~~~~~~~~~~~~~~-~~~-~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~ 142 (168)
T cd04149 72 HY--YTGTQGLIFVVD-SADRDRIDEARQELHRIINDR-EMR-DALLLVFANKQDLPDAM----KPHEIQEKLGLTRIRD 142 (168)
T ss_pred HH--hccCCEEEEEEe-CCchhhHHHHHHHHHHHhcCH-hhc-CCcEEEEEECcCCccCC----CHHHHHHHcCCCccCC
Confidence 21 246788777333 34443332211 111111111 011 14589999999986532 12444444321 111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
. . -.++++||++|.|++++..||.
T Consensus 143 ~-----------~-~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 143 R-----------N-WYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred C-----------c-EEEEEeeCCCCCChHHHHHHHh
Confidence 0 1 1467899999999999998874
No 116
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=2.9e-10 Score=92.28 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=41.7
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++|+++||+|+||+.++++++++. +++|+||+|||||||+++|-.
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 479999999999999999999887 799999999999999999953
No 117
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.06 E-value=3.1e-10 Score=90.54 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=78.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|||||||++++.... . .. +..|.+.+...+.. .... ..++++ +|. ..+.......
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~----~--~~--~~~T~~~~~~~~~~--~~~~-i~l~Dt-~G~------~~~~~~~~~~ 63 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDE----F--MQ--PIPTIGFNVETVEY--KNLK-FTIWDV-GGK------HKLRPLWKHY 63 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----C--CC--cCCcCceeEEEEEE--CCEE-EEEEEC-CCC------hhcchHHHHH
Confidence 5799999999999999998531 1 11 11123322221211 1111 246777 442 1111222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ...|.+++..+ ..++..+.+.. ++...+... ... -.+.+|+.||+|+.... ..+.+.+.++ .+...
T Consensus 64 ~---~~ad~ii~V~D-~s~~~s~~~~~~~~~~~~~~~-~~~-~~piilv~NK~Dl~~~~----~~~~~~~~~~-~~~~~- 131 (169)
T cd04158 64 Y---LNTQAVVFVVD-SSHRDRVSEAHSELAKLLTEK-ELR-DALLLIFANKQDVAGAL----SVEEMTELLS-LHKLC- 131 (169)
T ss_pred h---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHhcCh-hhC-CCCEEEEEeCcCcccCC----CHHHHHHHhC-Ccccc-
Confidence 2 35678777433 33343332211 111111110 111 14589999999986542 2344444432 11100
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
......++.+||++|.|++++.+||...
T Consensus 132 -------~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 132 -------CGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred -------CCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 0001135678999999999999998754
No 118
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.06 E-value=8.1e-10 Score=87.25 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=74.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|||||||++++..... .. ..+...+ .+.+. ..+........-..++|+ +|. ..+.....
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~--~~--~~~~~~t-~~~~~~~~~~~~~~~~~~~l~i~Dt-~G~------~~~~~~~~ 70 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGA--VF--PKNYLMT-TGCDFVVKEVPVDTDNTVELFIFDS-AGQ------ELYSDMVS 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--Cc--CccCCCc-eEEEEEEEEEEeCCCCEEEEEEEEC-CCH------HHHHHHHH
Confidence 68999999999999999984310 00 0000001 11111 001000001111235666 331 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+.... ..++.++|+||+|+.+..+.. ...... +...+ .
T Consensus 71 ~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~--~~~~~~-~~~~~-~- 138 (164)
T cd04101 71 NYW---ESPSVFILVYD-VSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVT--DAQAQA-FAQAN-Q- 138 (164)
T ss_pred HHh---CCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCC--HHHHHH-HHHHc-C-
Confidence 222 46788877333 333333322111111111110 114589999999997654321 111111 21111 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++...+..
T Consensus 139 ------------~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 139 ------------LKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred ------------CeEEEEeCCCCCChHHHHHHHHH
Confidence 13678999999999999877654
No 119
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.06 E-value=5.8e-10 Score=88.13 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=75.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|||||||++++... ... ...+ |.+.+...+.. .... ..+.|+ +|. ..+.......
T Consensus 3 v~~~G~~~~GKTsli~~l~~~---~~~---~~~p--t~g~~~~~~~~--~~~~-~~l~D~-~G~------~~~~~~~~~~ 64 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLG---EIV---TTIP--TIGFNVETVEY--KNIS-FTVWDV-GGQ------DKIRPLWRHY 64 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcC---CCc---ccCC--CCCcceEEEEE--CCEE-EEEEEC-CCC------HhHHHHHHHH
Confidence 678999999999999999742 111 1111 12222211111 1111 245666 442 2222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
...+|.+++-.+. .++..+.+.. ++...+... .. ...|.+|+.||+|+.+... .+++...+. ++. +
T Consensus 65 ---~~~ad~~i~v~D~-~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~i~~~~~-~~~-~- 131 (159)
T cd04150 65 ---FQNTQGLIFVVDS-NDRERIGEAREELQRMLNED-EL-RDAVLLVFANKQDLPNAMS----AAEVTDKLG-LHS-L- 131 (159)
T ss_pred ---hcCCCEEEEEEeC-CCHHHHHHHHHHHHHHHhcH-Hh-cCCCEEEEEECCCCCCCCC----HHHHHHHhC-ccc-c-
Confidence 2467888883332 2232222211 011111110 01 1145899999999965421 233333331 110 0
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
... . ..++++||++|.|++++.++|.
T Consensus 132 -----~~~-~-~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 132 -----RNR-N-WYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -----CCC-C-EEEEEeeCCCCCCHHHHHHHHh
Confidence 000 1 1356899999999999998874
No 120
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.04 E-value=1.4e-09 Score=86.37 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=75.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++.. +. ....+.+ .+.+.. .+...+.... ..+.|+ +|. ..+.....
T Consensus 5 i~iiG~~~vGKTsli~~~~~~----~~--~~~~~~t-~~~~~~~~~~~~~~~~~~-l~i~Dt-~G~------~~~~~~~~ 69 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK----KF--MADCPHT-IGVEFGTRIIEVNGQKIK-LQIWDT-AGQ------ERFRAVTR 69 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC----CC--CCCCCcc-cceeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHH
Confidence 678999999999999999853 11 1111111 221111 1111111111 245666 331 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++- .++.++..+.........+... . ....+.++|.||+|+.+.... ..+...+..+..+ .
T Consensus 70 ~~~---~~~~~~ilv-~d~~~~~s~~~~~~~~~~~~~~-~-~~~~~iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 139 (166)
T cd04122 70 SYY---RGAAGALMV-YDITRRSTYNHLSSWLTDARNL-T-NPNTVIFLIGNKADLEAQRDV--TYEEAKQFADENG--L 139 (166)
T ss_pred HHh---cCCCEEEEE-EECCCHHHHHHHHHHHHHHHHh-C-CCCCeEEEEEECcccccccCc--CHHHHHHHHHHcC--C
Confidence 222 366777662 3345555433221111111111 0 111458899999999765422 1233333332211 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
..+.+||++|.|++++...+.
T Consensus 140 -------------~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 140 -------------LFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred -------------EEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999876654
No 121
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=7e-10 Score=94.43 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.+++++|++|+||||+...+... ..|.++.++..|++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~ 42 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV 42 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence 37889999999999999888653 458899999988874
No 122
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.03 E-value=1.7e-09 Score=86.89 Aligned_cols=165 Identities=17% Similarity=0.101 Sum_probs=77.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCc-ccccchhh-hhcCCCC-cceeeeeeecCcceEeecchhHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGE-EIGVERAM-INEGEGG-ALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~-t~~~d~~~-~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
-++++|.+|+|||||++++....- +.....+..++.. ........ ......+ ..-..++|+ +|. ..+..
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt-~G~------~~~~~ 78 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDT-AGQ------ERFRS 78 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeC-CCh------HHHHH
Confidence 367999999999999999985421 1100001111100 00000000 0000000 111246776 331 22222
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
...... ...|.+++-.+ +.++..+.........+.... .....+.++|.||+|+.+.... ..++.....+..+
T Consensus 79 ~~~~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~ 151 (180)
T cd04127 79 LTTAFF---RDAMGFLLIFD-LTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYG 151 (180)
T ss_pred HHHHHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcC
Confidence 222222 36677777333 344444333211111121111 1112458899999999765321 1223333322221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +.+.+||++|.|++++..++..
T Consensus 152 --~-------------~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 152 --I-------------PYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999887753
No 123
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.03 E-value=3.2e-09 Score=87.46 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=37.6
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
+.++++||+|+.+.. ......+.+++..... .....+++++||++|+|+++|.+++.+..
T Consensus 139 ~iiivvNK~Dl~~~~----~~~~~~~~i~~~~~~~--------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 139 HIIIVQNKIDLVKEE----QALENYEQIKKFVKGT--------IAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred cEEEEEEchhccCHH----HHHHHHHHHHHHHhcc--------ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 378899999998643 1222223333322110 00123578999999999999999987643
No 124
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.03 E-value=7.7e-10 Score=104.97 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=81.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
+|+++|..++|||||+++|++..... .......|.|+.......... .+.. ..++|+ ||- +++...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr--~~eE~~rGiTI~l~~~~~~~~-~g~~-i~~IDt-PGh------e~fi~~--- 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADR--LPEEKKRGMTIDLGYAYWPQP-DGRV-LGFIDV-PGH------EKFLSN--- 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc--chhcccCCceEEeeeEEEecC-CCcE-EEEEEC-CCH------HHHHHH---
Confidence 68999999999999999998421000 000111232222211111111 1111 257787 441 233333
Q ss_pred HHHhccCCcEEEEcccCCCCchhHH-HHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~-~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
...-...+|.+++-.+.-..+.+.. +.+. .+ ..... ...+||+||+|+++.+ .++.+.+.++......
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~---il-~~lgi---~~iIVVlNKiDlv~~~----~~~~v~~ei~~~l~~~ 136 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLA---IL-QLTGN---PMLTVALTKADRVDEA----RIAEVRRQVKAVLREY 136 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHH---HH-HHcCC---CeEEEEEECCccCCHH----HHHHHHHHHHHHHHhc
Confidence 2222356888877333211111111 1110 11 11111 1147899999998754 2333344443321100
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+...+++++||++|+|+++|.+.|...
T Consensus 137 --------~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 137 --------GFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred --------CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 0012368899999999999999998754
No 125
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.03 E-value=1.5e-09 Score=87.30 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=35.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.++++||+|+...... ..+......+..+ ..++++||++|.|+.++..++..
T Consensus 107 ~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 107 VPIVLVGNKSDLHTQRQV--STEEGKELAESWG---------------AAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred CCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 458999999998754321 1122222222211 14678999999999999888764
No 126
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.02 E-value=7.3e-10 Score=90.21 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=75.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
|+++|.+|+|||||+++++... .. ......|.+.+. ..+..++... ...++|++ |. ..+ ..+.
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~----~~--~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~~-G~------~~~-~~~~ 67 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR----FL--VGPYQNTIGAAFVAKRMVVGERVV-TLGIWDTA-GS------ERY-EAMS 67 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----cC--CcCcccceeeEEEEEEEEECCEEE-EEEEEECC-Cc------hhh-hhhh
Confidence 6899999999999999998531 11 000111111111 0111111111 11355663 21 111 1222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC--cchHHHHHHHHHhhcC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS--GDSLDELEKEIHEINS 190 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~--~~~~~~~~~~l~~~~p 190 (263)
... ....|.+++-.+ +.++..+.........+... ..-.+.++|.||+|+.+.... ....+.+.+.....+
T Consensus 68 ~~~--~~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~- 140 (193)
T cd04118 68 RIY--YRGAKAAIVCYD-LTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK- 140 (193)
T ss_pred Hhh--cCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-
Confidence 221 236777777333 34444332211111111111 112458999999998754210 001122222222111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++.+++..
T Consensus 141 --------------~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 141 --------------AQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred --------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 13678999999999999988764
No 127
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.02 E-value=5.2e-10 Score=88.47 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||+++++..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 128
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.01 E-value=3.1e-09 Score=90.16 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=79.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc-cchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG-VERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~-~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|+|||||+++++...-. .....+ +. .....+...+.. +..+++|++ |. ..+ ..+..
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~f~------~~y~pT-i~d~~~k~~~i~~~~-~~l~I~Dt~-G~------~~~-~~~~~ 66 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGRFE------EQYTPT-IEDFHRKLYSIRGEV-YQLDILDTS-GN------HPF-PAMRR 66 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCCCC------CCCCCC-hhHhEEEEEEECCEE-EEEEEEECC-CC------hhh-hHHHH
Confidence 689999999999999999853110 011111 21 111111111111 112456763 21 112 12333
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccc-------eeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESA-------VRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH 186 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~-------~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~ 186 (263)
.. ....|.+++-. .+.++..+.........+... .....-++.++|.||+|+....+. ..+++.+.+.
T Consensus 67 ~~--~~~ad~iIlVf-dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~ 141 (247)
T cd04143 67 LS--ILTGDVFILVF-SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVG 141 (247)
T ss_pred HH--hccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHH
Confidence 22 13567777622 234444332221111111110 001112568999999999753221 2344544443
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
..+ . ..++.+||++|.|++++..++....
T Consensus 142 ~~~-~-------------~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 142 GDE-N-------------CAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred hcC-C-------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 211 1 1468899999999999998887543
No 129
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.01 E-value=1.4e-09 Score=89.23 Aligned_cols=165 Identities=16% Similarity=0.070 Sum_probs=76.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-e-ecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-C-TVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~-~~~~~~~~~l~ 112 (263)
|+|+|.+|+|||||+++++... ... ...+..+.......+...+. ..-..++|+ +|... . +...+...
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~----f~~-~~~pt~~~~~~~~~i~~~~~-~~~l~i~Dt-~G~~~~~~~~~~e~~~--- 72 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQE----FPE-EYIPTEHRRLYRPAVVLSGR-VYDLHILDV-PNMQRYPGTAGQEWMD--- 72 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCC----CCc-ccCCccccccceeEEEECCE-EEEEEEEeC-CCcccCCccchhHHHH---
Confidence 6899999999999999998531 100 11222111111011111111 111246777 33210 0 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
........+|.+++-.+ ..++..+.........+..... ...-+|.++|.||+|+.+.... ..+.+.+..++.. .
T Consensus 73 ~~~~~~~~ad~iilv~D-~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~-~ 148 (198)
T cd04142 73 PRFRGLRNSRAFILVYD-ICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSW-K 148 (198)
T ss_pred HHHhhhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhc-C
Confidence 11111246888888333 3344433222111111111110 0122569999999999664321 1122222111111 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
-+.+.+||++|.|++++...+.
T Consensus 149 -------------~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 149 -------------CGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred -------------CcEEEecCCCCCCHHHHHHHHH
Confidence 1468899999999999887665
No 130
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.00 E-value=7e-09 Score=86.70 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=40.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe---E--------EE-ee-cCCCChhhhhccccCCcchhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH---V--------IR-SV-RCQVDLSEVLNCRAYDATHVTRLEG 223 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~---i--------~~-~~-~~~~~~~~ii~isa~~g~~~~~l~~ 223 (263)
++.++|+||+|+++..+....++.+.+.++. +.+. . +. +. .......+++.+||.+|+|++.|+.
T Consensus 139 ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~--~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 139 IPVFVVVTKIDLAPANILQETLKDLKRILKV--PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred CCEEEEEECccccCHHHHHHHHHHHHHHhcC--CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 3478999999998764322233334444431 1111 0 00 00 0111234788899999999999998
Q ss_pred hhhhh
Q 024744 224 LLEEH 228 (263)
Q Consensus 224 ~l~~~ 228 (263)
.|...
T Consensus 217 ~L~~l 221 (224)
T cd04165 217 FLNLL 221 (224)
T ss_pred HHHhc
Confidence 87653
No 131
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.00 E-value=1.1e-09 Score=90.68 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.6
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++|+|.+|||||||+++|+.
T Consensus 2 i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred EEEEECCCCCHHHHHHHHHH
Confidence 68999999999999999975
No 132
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.99 E-value=2.1e-09 Score=85.81 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=75.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|+|||||+++++.. +..+-... .+ .+.+. ..+...+.... ..+.++ +|. ..+ ..+
T Consensus 6 kv~~vG~~~vGKTsli~~~~~~----~f~~~~~~-~T-~~~~~~~~~~~~~~~~~~-l~~~d~-~g~------~~~-~~~ 70 (169)
T cd01892 6 LCFVLGAKGSGKSALLRAFLGR----SFSLNAYS-PT-IKPRYAVNTVEVYGQEKY-LILREV-GED------EVA-ILL 70 (169)
T ss_pred EEEEECCCCCcHHHHHHHHhCC----CCCcccCC-Cc-cCcceEEEEEEECCeEEE-EEEEec-CCc------ccc-ccc
Confidence 4789999999999999999842 22101111 11 21111 11111111111 123344 221 111 111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC-cchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS-GDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~-~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+ ..++..+.........+.. ..-+|.++|+||+|+.+..+. ....+++. +.+
T Consensus 71 ~~~~--~~~~d~~llv~d-~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---~~~-- 138 (169)
T cd01892 71 NDAE--LAACDVACLVYD-SSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFC---RKL-- 138 (169)
T ss_pred chhh--hhcCCEEEEEEe-CCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHH---HHc--
Confidence 1111 146788877433 3444443322111111111 112569999999998654310 00112221 111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+....+.+||.+|.|++++...+...
T Consensus 139 ------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 139 ------------GLPPPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred ------------CCCCCEEEEeccCccHHHHHHHHHHH
Confidence 12235789999999999998877654
No 133
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.99 E-value=1.5e-09 Score=87.18 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=79.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||++++... . . ....+ |.+.+...+.. .... ..+.|+ +|. ..+.....
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~---~-~--~~~~~--t~~~~~~~~~~--~~~~-l~l~D~-~G~------~~~~~~~~ 75 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLG---E-S--VTTIP--TIGFNVETVTY--KNIS-FTVWDV-GGQ------DKIRPLWR 75 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC---C-C--CCcCC--ccccceEEEEE--CCEE-EEEEEC-CCC------hhhHHHHH
Confidence 35789999999999999999742 1 1 11111 13322211111 1111 246777 342 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ..+|.+++-.+ +.++..+.+.. ++...+... ... -.+.+||.||+|+.+... .+++...+... .
T Consensus 76 ~~~---~~ad~ii~v~D-~t~~~s~~~~~~~l~~~~~~~-~~~-~~piilv~NK~Dl~~~~~----~~~i~~~~~~~--~ 143 (175)
T smart00177 76 HYY---TNTQGLIFVVD-SNDRDRIDEAREELHRMLNED-ELR-DAVILVFANKQDLPDAMK----AAEITEKLGLH--S 143 (175)
T ss_pred HHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHhhCH-hhc-CCcEEEEEeCcCcccCCC----HHHHHHHhCcc--c
Confidence 222 46788877333 34444333221 111111111 011 145899999999875421 23333333210 0
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+ ... .-.++++||++|.|+.++.+||...
T Consensus 144 ~------~~~--~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 144 I------RDR--NWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred c------CCC--cEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 0 000 1135579999999999999998654
No 134
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.99 E-value=3.1e-09 Score=86.44 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=75.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|+|||||+++++... +. .....+ .+... ..+...+ ......++|+ +|. ..+......
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~----f~--~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH----FV--ETYDPT-IEDSYRKQVVVDG-QPCMLEVLDT-AGQ------EEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CC--ccCCCc-hHhhEEEEEEECC-EEEEEEEEEC-CCc------hhhHHHHHH
Confidence 6799999999999999998431 10 111111 11110 0001111 1111246777 331 122222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ...|.+++-.+ +.++..+.........+..... ...-.|.++|.||+|+.+.... ......+..+..+ +
T Consensus 67 ~~---~~ad~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~ 138 (190)
T cd04144 67 WI---REGEGFILVYS-ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV--STEEGAALARRLG--C 138 (190)
T ss_pred HH---HhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHhC--C
Confidence 22 35666666333 3444433221111111111100 0112458899999999754321 1122222222221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.+||++|.|++++..++..
T Consensus 139 -------------~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 139 -------------EFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred -------------EEEEecCCCCCCHHHHHHHHHH
Confidence 3578999999999999888764
No 135
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.98 E-value=2.1e-09 Score=84.83 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=74.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc-cchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG-VERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~-~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|+|||||+++++..... .....+ .. .....+...+... ...+.|+ +|. +.+......
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~~~ 68 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFI------EKYDPT-IEDFYRKEIEVDSSPS-VLEILDT-AGT------EQFASMRDL 68 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-hhheEEEEEEECCEEE-EEEEEEC-CCc------ccccchHHH
Confidence 689999999999999999853110 000111 11 0000011111011 1235666 331 122222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ...|.+++-. .+.++..+.+.......+...... .-+|.++|.||+|+.+.... ..+......+.. .
T Consensus 69 ~~---~~ad~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~~~~~--~~~~~~~~~~~~--~-- 137 (163)
T cd04176 69 YI---KNGQGFIVVY-SLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLESEREV--SSAEGRALAEEW--G-- 137 (163)
T ss_pred HH---hhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcCcc--CHHHHHHHHHHh--C--
Confidence 22 2456666522 345555443322111112111110 12558999999998754321 111211111111 1
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++++||++|.|++++..++..
T Consensus 138 -----------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 138 -----------CPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred -----------CEEEEecCCCCCCHHHHHHHHHH
Confidence 13678999999999999887653
No 136
>PTZ00369 Ras-like protein; Provisional
Probab=98.98 E-value=3.6e-09 Score=86.05 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=75.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|.+|+|||||+++++...... ... .+ .+... ..+...+ .....+++|+ +|. .++.....
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~~~~~-----~~~-~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~l~~ 71 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQNHFID-----EYD-PT-IEDSYRKQCVIDE-ETCLLDILDT-AGQ------EEYSAMRD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-----CcC-Cc-hhhEEEEEEEECC-EEEEEEEEeC-CCC------ccchhhHH
Confidence 46799999999999999998532100 000 11 11100 0000111 1111245677 332 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++-. .+.++..+.........+..... ..-+|.++|.||+|+.+.... ..+...+..+..+
T Consensus 72 ~~~---~~~d~iilv~-D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i--~~~~~~~~~~~~~--- 141 (189)
T PTZ00369 72 QYM---RTGQGFLCVY-SITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQV--STGEGQELAKSFG--- 141 (189)
T ss_pred HHh---hcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHHHHHHHHhC---
Confidence 222 3566666622 23444432221111111111111 112458999999998654321 1122222222211
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++..++..
T Consensus 142 ------------~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 142 ------------IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred ------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 13678999999999998888764
No 137
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.98 E-value=1.6e-09 Score=87.58 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||++++.... . ....+ |.+.+...+... .. ...+.|+ +|. ..+......
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~----~--~~~~p--t~g~~~~~~~~~--~~-~~~i~D~-~Gq------~~~~~~~~~ 80 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGE----I--VTTIP--TIGFNVETVEYK--NI-SFTVWDV-GGQ------DKIRPLWRH 80 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCC----C--ccccC--CcceeEEEEEEC--CE-EEEEEEC-CCC------HHHHHHHHH
Confidence 47899999999999999997421 1 11111 122222112111 11 1246676 332 222222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ..+|.+++-.+ ..++..+.+.. .+...+... .. ...+.+|+.||+|+.+.. ..+++.+.+.-.+...
T Consensus 81 ~~---~~a~~iI~V~D-~s~~~s~~~~~~~l~~~l~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~ 150 (181)
T PLN00223 81 YF---QNTQGLIFVVD-SNDRDRVVEARDELHRMLNED-EL-RDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQ 150 (181)
T ss_pred Hh---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHhcCH-hh-CCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCC
Confidence 22 46788777333 34444332211 111111110 11 124589999999987654 2345555442111000
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..-.++++||++|+|+.++..||..
T Consensus 151 ----------~~~~~~~~Sa~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 151 ----------RHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
T ss_pred ----------CceEEEeccCCCCCCHHHHHHHHHH
Confidence 0002457899999999999998864
No 138
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=3.4e-09 Score=85.95 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=75.0
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++.. +... ...+ |.+.+. ..+...+.. ....++++ +|. ........
T Consensus 3 i~v~G~~~vGKSsli~~~~~~----~~~~-~~~~--t~~~~~~~~~~~~~~~~-~~~~i~Dt-~g~------~~~~~~~~ 67 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTED----EFSE-STKS--TIGVDFKIKTVYIENKI-IKLQIWDT-NGQ------ERFRSLNN 67 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcC----CCCC-CCCC--ceeeEEEEEEEEECCEE-EEEEEEEC-CCc------HHHHhhHH
Confidence 689999999999999999843 2210 0010 111111 111111111 11245666 331 12222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ....|.+++-.+ +.++..+..+......+..... .-.+.++|.||+|+.+.... ..+......+..
T Consensus 68 ~~---~~~~d~iilv~d-~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~---- 135 (188)
T cd04125 68 SY---YRGAHGYLLVYD-VTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSL---- 135 (188)
T ss_pred HH---ccCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccC--CHHHHHHHHHHc----
Confidence 22 246788777332 3444443322111111111111 11457899999998754321 112222222211
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. +.+.+||++|.|++++..++..
T Consensus 136 ----------~~-~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 136 ----------NI-PFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ----------CC-eEEEEeCCCCCCHHHHHHHHHH
Confidence 11 4678999999999988877653
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.97 E-value=1.1e-08 Score=81.90 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=36.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
++.++|+||+|+.+.. .....+.+.+... . ...+++.+||++|.|++++.+++...
T Consensus 120 ~~iiiv~NK~Dl~~~~-----~~~~~~~~~~~~~-~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 120 LEIIPVINKIDLPSAD-----PERVKQQIEDVLG-L----------DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred CCEEEEEECCCCCcCC-----HHHHHHHHHHHhC-C----------CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 3488999999986532 1222233332211 0 12347899999999999999887653
No 140
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.96 E-value=1.7e-09 Score=87.52 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=76.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||++++... ... ...+ |.+.+...+.. .... ..++|+ +|. ..+.......
T Consensus 20 v~lvG~~~vGKTsli~~~~~~---~~~---~~~~--T~~~~~~~~~~--~~~~-~~l~D~-~G~------~~~~~~~~~~ 81 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLG---EVV---TTIP--TIGFNVETVEY--KNLK-FTMWDV-GGQ------DKLRPLWRHY 81 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcC---Ccc---ccCC--ccccceEEEEE--CCEE-EEEEEC-CCC------HhHHHHHHHH
Confidence 779999999999999999742 111 1111 12222111111 1111 246676 442 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ..+|.+++-.+ ..++..+.+.. .+...+... ... -.+.+||.||.|+.+... .+.+...+.. ..++
T Consensus 82 ~---~~ad~iI~v~D-~t~~~s~~~~~~~l~~~~~~~-~~~-~~piilv~NK~Dl~~~~~----~~~i~~~l~~--~~~~ 149 (182)
T PTZ00133 82 Y---QNTNGLIFVVD-SNDRERIGDAREELERMLSED-ELR-DAVLLVFANKQDLPNAMS----TTEVTEKLGL--HSVR 149 (182)
T ss_pred h---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCH-hhc-CCCEEEEEeCCCCCCCCC----HHHHHHHhCC--Cccc
Confidence 2 46788777433 33443332211 011111110 011 145889999999865431 2333333321 0110
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.. . -.++.+||++|.|++++.+++...
T Consensus 150 ------~~-~-~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 150 ------QR-N-WYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred ------CC-c-EEEEeeeCCCCCCHHHHHHHHHHH
Confidence 00 0 024578999999999999998653
No 141
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.96 E-value=3.1e-09 Score=84.27 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=33.9
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|.||+|+.+..+. ..+......+.. . ...+.+||++|.|++++..++..
T Consensus 109 ~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~--~-------------~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 109 IPIMLVGNKCDESHKREV--SSNEGAACATEW--N-------------CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCEEEEEECccccccCee--cHHHHHHHHHHh--C-------------CcEEEeecCCCCCHHHHHHHHHh
Confidence 568999999999764321 111111111111 1 14678999999999999888753
No 142
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.96 E-value=5.4e-09 Score=86.02 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
|+++|..|+|||||++++....- ..+...|.+.+.. .+..++... -..+.|++ |. +.+. .+.
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~f-------~~~~~~Ti~~~~~~~~i~~~~~~v-~l~iwDta-Gq------e~~~-~l~ 66 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTF-------CEACKSGVGVDFKIKTVELRGKKI-RLQIWDTA-GQ------ERFN-SIT 66 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCCC-------CCcCCCcceeEEEEEEEEECCEEE-EEEEEeCC-Cc------hhhH-HHH
Confidence 67999999999999999985311 0111111221111 111111111 12456663 31 2222 222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ....|.+++ +.++.++..+.........+... . ..-++.++|.||+|+.+..+. ..+...+..++. ..
T Consensus 67 ~~y--~~~ad~iIl-VfDvtd~~Sf~~l~~w~~~i~~~-~-~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~-~~- 137 (202)
T cd04120 67 SAY--YRSAKGIIL-VYDITKKETFDDLPKWMKMIDKY-A-SEDAELLLVGNKLDCETDREI--SRQQGEKFAQQI-TG- 137 (202)
T ss_pred HHH--hcCCCEEEE-EEECcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECccccccccc--CHHHHHHHHHhc-CC-
Confidence 222 136777777 33355555543321111112211 1 112558999999999754322 112222211111 11
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
-..+.+||++|.|++++..++..
T Consensus 138 ------------~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 138 ------------MRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 13678999999999998877653
No 143
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.95 E-value=7.8e-10 Score=88.05 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=74.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|||||||+++++......+ ...|.+.+... +.... ......+.|+ +|. +.+ ..+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~-~~~~ 66 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFEKK-------YVATLGVEVHPLDFHTNR-GKIRFNVWDT-AGQ------EKF-GGLR 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCC-------CCCceeeEEEEEEEEECC-EEEEEEEEEC-CCC------hhh-cccc
Confidence 68999999999999999985321100 00112111111 11111 1111245666 332 111 1121
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ....|.+++-.+ +.++..+.........+..... -+|.++|.||+|+.+.... .+.. .+...+
T Consensus 67 ~~~--~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~----~~~~-~~~~~~--- 132 (166)
T cd00877 67 DGY--YIGGQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVK----AKQI-TFHRKK--- 132 (166)
T ss_pred HHH--hcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCC----HHHH-HHHHHc---
Confidence 111 135677666333 3444443222111111211111 2558999999999744311 1111 111111
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+.+.+||++|.|++++.+++...
T Consensus 133 -----------~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 133 -----------NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred -----------CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 1246889999999999999888643
No 144
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.95 E-value=5.4e-09 Score=87.25 Aligned_cols=156 Identities=15% Similarity=0.074 Sum_probs=74.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
|+++|.+|+|||||+++++... .. ......+...+. ..+........ ..++|+ +|.- ..+.
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~----~~--~~~~~~t~~~~~~~~~i~~~~~~~~-l~i~Dt-~G~~---------~~~~ 65 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGE----YD--DHAYDASGDDDTYERTVSVDGEEST-LVVIDH-WEQE---------MWTE 65 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCC----cC--ccCcCCCccccceEEEEEECCEEEE-EEEEeC-CCcc---------hHHH
Confidence 6899999999999999997421 11 011111011010 00111011111 235666 3321 1222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..... ...|.+++-. .+.++..+.........+... ....-+|.++|.||+|+.+.... ..+...+ +...+. +
T Consensus 66 ~~~~~-~~ad~iilV~-d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~-~a~~~~-~ 138 (221)
T cd04148 66 DSCMQ-YQGDAFVVVY-SVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARSREV--SVQEGRA-CAVVFD-C 138 (221)
T ss_pred hHHhh-cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccccee--cHHHHHH-HHHHcC-C
Confidence 22211 1678877733 234444332211111111111 00112558999999999765421 1122222 211111 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.+||.+|.|++++.+++..
T Consensus 139 -------------~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 139 -------------KFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred -------------eEEEecCCCCCCHHHHHHHHHH
Confidence 3578999999999999988764
No 145
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.95 E-value=7.2e-09 Score=84.80 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+|+|||||+++|+..
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~ 25 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKV 25 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
No 146
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.94 E-value=4e-10 Score=84.24 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=50.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
|+|+|++|||||||+|+|+ +.+.+.+.+.+++|........... ...+ .++|+ ||..-........+.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~----~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~-~~vDt-pG~~~~~~~~~~~~~~~~~ 73 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT----GKKLAKVSNIPGTTRDPVYGQFEYN--NKKF-ILVDT-PGINDGESQDNDGKEIRKF 73 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH----TSTSSEESSSTTSSSSEEEEEEEET--TEEE-EEEES-SSCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh----ccccccccccccceeeeeeeeeeec--eeeE-EEEeC-CCCcccchhhHHHHHHHHH
Confidence 6899999999999999999 5445567777777555432222211 1222 47888 5532111111111234344
Q ss_pred HHhccCCcEEEEccc
Q 024744 115 VQRKERLDHILLETT 129 (263)
Q Consensus 115 ~~~~~~~d~ilie~~ 129 (263)
.......|++++-..
T Consensus 74 ~~~~~~~d~ii~vv~ 88 (116)
T PF01926_consen 74 LEQISKSDLIIYVVD 88 (116)
T ss_dssp HHHHCTESEEEEEEE
T ss_pred HHHHHHCCEEEEEEE
Confidence 444467888888444
No 147
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.94 E-value=7.2e-09 Score=98.01 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=79.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEE--ecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVI--LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii--~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
+|+++|.+|+|||||+++|++. ..... ....|.|++.....+...+ . ...++|+ +|. +.+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~----~~d~~~eE~~rGiTid~~~~~~~~~~--~-~v~~iDt-PGh------e~f~~-- 65 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI----AADRLPEEKKRGMTIDLGFAYFPLPD--Y-RLGFIDV-PGH------EKFIS-- 65 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc----cCcCChhHhcCCceEEeEEEEEEeCC--E-EEEEEEC-CCH------HHHHH--
Confidence 5889999999999999999842 11000 0112222222111121111 1 1257787 442 23332
Q ss_pred HHHHHhccCCcEEEEcccCCCC--chhHHHHhhcccccccceeeCeEEe-eEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 112 EQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIIT-DVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~--p~~~~~~~~~~~~l~~~~~~~~~i~-~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
....-...+|.+++-.+.... +........ + .... ++ .+||+||+|+++.+ ..+.+.+.++.+
T Consensus 66 -~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~i----l-~~lg----i~~iIVVlNK~Dlv~~~----~~~~~~~ei~~~ 131 (581)
T TIGR00475 66 -NAIAGGGGIDAALLVVDADEGVMTQTGEHLAV----L-DLLG----IPHTIVVITKADRVNEE----EIKRTEMFMKQI 131 (581)
T ss_pred -HHHhhhccCCEEEEEEECCCCCcHHHHHHHHH----H-HHcC----CCeEEEEEECCCCCCHH----HHHHHHHHHHHH
Confidence 222223568888873332221 111111111 1 1111 23 88999999998754 223333333322
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.... +.....+++++||++|+|++++...+..
T Consensus 132 l~~~-------~~~~~~~ii~vSA~tG~GI~eL~~~L~~ 163 (581)
T TIGR00475 132 LNSY-------IFLKNAKIFKTSAKTGQGIGELKKELKN 163 (581)
T ss_pred HHHh-------CCCCCCcEEEEeCCCCCCchhHHHHHHH
Confidence 1100 0001236889999999999998877754
No 148
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.94 E-value=4e-09 Score=84.32 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=75.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++...-.. +...|.+.+.. .+...+... -.++.|+ +|. +.+. .+.
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~f~~-------~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~-~~~ 66 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFDK-------NYKATIGVDFEMERFEILGVPF-SLQLWDT-AGQ------ERFK-CIA 66 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-------CCCCceeeEEEEEEEEECCEEE-EEEEEeC-CCh------HHHH-hhH
Confidence 6799999999999999999642110 11111221111 011111111 1246676 332 2222 222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ....|.+++-.+ +.++..+.... ++....... .+...+.++|.||+|+.+........+...+..++++
T Consensus 67 ~~~--~~~ad~~ilv~d-~~~~~s~~~~~~~~~~~~~~~--~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-- 139 (170)
T cd04108 67 STY--YRGAQAIIIVFD-LTDVASLEHTRQWLEDALKEN--DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-- 139 (170)
T ss_pred HHH--hcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC--
Confidence 221 246788777333 23333322111 111111111 1112347899999998654321000111112212111
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+ +.+.+||++|.|++++...+...
T Consensus 140 ~-------------~~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 140 A-------------EYWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred C-------------eEEEEECCCCCCHHHHHHHHHHH
Confidence 1 35678999999999998777543
No 149
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.93 E-value=6.6e-09 Score=85.13 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=76.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||+++++...... ....+........+...+... -..++|+ +|- ..+ ..+...
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~-~l~i~D~-~G~------~~~-~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEP------KYRRTVEEMHRKEYEVGGVSL-TLDILDT-SGS------YSF-PAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc------cCCCchhhheeEEEEECCEEE-EEEEEEC-CCc------hhh-hHHHHH
Confidence 6899999999999999998532111 000110011000011111001 1245666 331 111 122222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV 194 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i 194 (263)
. ....|.+++-.+ +.++..+.........+..... ...+|.++|+||+|+.+.... ...+...+... ....
T Consensus 67 ~--~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~-v~~~~~~~~~~-~~~~--- 137 (198)
T cd04147 67 S--IQNSDAFALVYA-VDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQ-VPAKDALSTVE-LDWN--- 137 (198)
T ss_pred H--hhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccccc-ccHHHHHHHHH-hhcC---
Confidence 2 246788777333 4455444322111111111111 112568999999999764211 01111111111 1111
Q ss_pred EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+||++|.|++++..++..
T Consensus 138 ----------~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 138 ----------CGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred ----------CcEEEecCCCCCCHHHHHHHHHH
Confidence 24678999999999999988764
No 150
>PRK09866 hypothetical protein; Provisional
Probab=98.93 E-value=4.3e-09 Score=98.08 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=44.1
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY 230 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~ 230 (263)
+.++|+||+|+.+.+. ...+.+.+.++..... ..+++.+++++||++|.|+++|.+.+..+..
T Consensus 291 PVILVVNKIDl~dree--ddkE~Lle~V~~~L~q--------~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 291 PLYVLVNKFDQQDRNS--DDADQVRALISGTLMK--------GCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred CEEEEEEcccCCCccc--chHHHHHHHHHHHHHh--------cCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 5889999999975432 1245555655432110 1225778999999999999999999887554
No 151
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.93 E-value=6.1e-09 Score=87.64 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++|++|+|||||+|+|++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~ 23 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT 23 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3689999999999999999943
No 152
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.93 E-value=6.3e-09 Score=86.22 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++... .... .++ |.+.+.. .+........-..+.|+ +|. ..+.....
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~----~~~~-~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt-~G~------~~~~~~~~ 70 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGR----FAEV-SDP--TVGVDFFSRLIEIEPGVRIKLQLWDT-AGQ------ERFRSITR 70 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCCC-CCc--eeceEEEEEEEEECCCCEEEEEEEeC-Ccc------hhHHHHHH
Confidence 6899999999999999998532 1100 111 1222211 11110001111245666 331 11211111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++ +-++.++..+..+......+..... ....+.+||.||+|+.+.... ..+...+..+..+ .
T Consensus 71 ~~~---~~~d~iil-v~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~ 141 (211)
T cd04111 71 SYY---RNSVGVLL-VFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--M 141 (211)
T ss_pred HHh---cCCcEEEE-EEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--C
Confidence 221 35677666 2234555443332111111111111 111346788999999764321 1222222222221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.+||++|.|++++..++..
T Consensus 142 -------------~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 142 -------------KYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 3577899999999999888764
No 153
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.92 E-value=1e-08 Score=81.05 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=74.7
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++.. +. ......|.+.+.. .+...+... -..+.+++ |. ..+.....
T Consensus 3 i~vvG~~~~GKTsli~~~~~~----~~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~~-g~------~~~~~~~~ 67 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDN----EF---HSSHISTIGVDFKMKTIEVDGIKV-RIQIWDTA-GQ------ERYQTITK 67 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcC----CC---CCCCCCceeeEEEEEEEEECCEEE-EEEEEeCC-Cc------HhHHhhHH
Confidence 689999999999999999843 11 1111111222211 111111011 11355652 21 12222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ..+|.+++- .++.++..+.........+... ...-++.++|.||.|+.+..... .++.....+..+ .
T Consensus 68 ~~~---~~~~~~i~v-~d~~~~~sf~~~~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~v~--~~~~~~~~~~~~--~ 137 (161)
T cd04117 68 QYY---RRAQGIFLV-YDISSERSYQHIMKWVSDVDEY--APEGVQKILIGNKADEEQKRQVG--DEQGNKLAKEYG--M 137 (161)
T ss_pred HHh---cCCcEEEEE-EECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCCC--HHHHHHHHHHcC--C
Confidence 221 356777662 2344444433221101111111 11125588999999997654221 122222222221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+.+.+||++|.|++++..+|.
T Consensus 138 -------------~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 138 -------------DFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHH
Confidence 357899999999999988764
No 154
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.92 E-value=5.8e-09 Score=82.97 Aligned_cols=53 Identities=25% Similarity=0.080 Sum_probs=35.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+|.++|.||+|+.+... ..+++++..+..+ ...++.+||++|.|+.++...+.
T Consensus 115 ~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 115 FPFVVLGNKNDIPERQV---STEEAQAWCRENG--------------DYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred CcEEEEEECcccccccc---CHHHHHHHHHHCC--------------CCeEEEEECCCCCCHHHHHHHHH
Confidence 56899999999874321 2344444444332 12467899999999998887654
No 155
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.92 E-value=3.7e-09 Score=84.24 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=75.8
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|||||||++++..... .-..+ |.+.....+... ... ..++|+ +|. ..+.......
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~----~~~~~----t~g~~~~~~~~~--~~~-~~i~D~-~G~------~~~~~~~~~~ 63 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP----KKVAP----TVGFTPTKLRLD--KYE-VCIFDL-GGG------ANFRGIWVNY 63 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC----ccccC----cccceEEEEEEC--CEE-EEEEEC-CCc------HHHHHHHHHH
Confidence 68999999999999999984311 11111 122211111111 111 246777 332 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
. ...|.+++-.+ ..++..+.+.. ++...+... .. .-+|.+||+||+|+.+... ...+.+.+. +...+
T Consensus 64 ~---~~a~~ii~V~D-~s~~~s~~~~~~~l~~l~~~~-~~-~~~piliv~NK~Dl~~~~~----~~~i~~~~~-l~~~~- 131 (167)
T cd04161 64 Y---AEAHGLVFVVD-SSDDDRVQEVKEILRELLQHP-RV-SGKPILVLANKQDKKNALL----GADVIEYLS-LEKLV- 131 (167)
T ss_pred H---cCCCEEEEEEE-CCchhHHHHHHHHHHHHHcCc-cc-cCCcEEEEEeCCCCcCCCC----HHHHHHhcC-ccccc-
Confidence 2 46777777332 33333332211 111111110 11 1246899999999976541 233433321 00000
Q ss_pred EEEeecCCCChhhhhccccCCc------chhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDA------THVTRLEGLLE 226 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g------~~~~~l~~~l~ 226 (263)
.... ..-.++.+||++| .|+.+..+||.
T Consensus 132 ---~~~~--~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 132 ---NENK--SLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred ---CCCC--ceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 0000 1124667999998 78988888874
No 156
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.91 E-value=1.4e-09 Score=99.37 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|.+|+|||||+++|+.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~ 28 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLY 28 (425)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 478999999999999999984
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.91 E-value=5.2e-09 Score=95.80 Aligned_cols=119 Identities=22% Similarity=0.294 Sum_probs=64.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l 111 (263)
-++++|.||+|||||+|+|+ +...+++.+.+|+|++.....+... +..+ .++|+ +|.- .. .+..+. +
T Consensus 205 kVvIvG~~nvGKSSLiN~L~----~~~~aivs~~pgtTrd~~~~~i~~~--g~~v-~l~DT-aG~~--~~-~~~ie~~gi 273 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALL----KQDRAIVSDIKGTTRDVVEGDFELN--GILI-KLLDT-AGIR--EH-ADFVERLGI 273 (442)
T ss_pred EEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcEEEEEEEEEEEC--CEEE-EEeeC-CCcc--cc-hhHHHHHHH
Confidence 57899999999999999999 5555677788888665443333332 2222 46777 4421 11 111111 1
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
.........+|.+++-.+. .++...... ++.. +.. .-++.++|+||+|+.+.
T Consensus 274 ~~~~~~~~~aD~il~V~D~-s~~~s~~~~-~l~~-~~~-----~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDA-SQPLTKDDF-LIID-LNK-----SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHHhhCCEEEEEEEC-CCCCChhHH-HHHH-Hhh-----CCCCEEEEEECccCCCc
Confidence 1112222467888874443 222221111 1111 111 11358899999999653
No 158
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.90 E-value=6.3e-09 Score=82.76 Aligned_cols=55 Identities=18% Similarity=0.066 Sum_probs=34.9
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.|.+++.||+|+.+.... ..+...+..+..+ ..+++.+||++|.|++++..++..
T Consensus 107 ~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 107 VPMVLVGNKADLEDDRQV--SREDGVSLSQQWG--------------NVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred CCEEEEEEChhccccCcc--CHHHHHHHHHHcC--------------CceEEEeeCCCCCCHHHHHHHHHH
Confidence 458889999998765321 1222222222211 124778999999999998887754
No 159
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.89 E-value=1.6e-09 Score=86.26 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=45.7
Q ss_pred eEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
+|++++|+|.|++ .++++++++. ++.++|++|||||||++.|... .+..++.+-..+.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence 5899999999966 4599998776 7999999999999999999765 23444444444443
No 160
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.89 E-value=7e-09 Score=82.12 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++++|.+|+|||||+++++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999999984
No 161
>PLN03108 Rab family protein; Provisional
Probab=98.88 E-value=5.2e-09 Score=86.62 Aligned_cols=53 Identities=25% Similarity=0.116 Sum_probs=34.3
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.+++.||+|+.+.... ..+...+..+..+ . ..+.+||+++.|++++..++.
T Consensus 112 ~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 112 MTIMLIGNKCDLAHRRAV--STEEGEQFAKEHG--L-------------IFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred CcEEEEEECccCccccCC--CHHHHHHHHHHcC--C-------------EEEEEeCCCCCCHHHHHHHHH
Confidence 558999999999764321 2233333333221 1 367899999999998776654
No 162
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.88 E-value=6.2e-09 Score=84.80 Aligned_cols=155 Identities=10% Similarity=0.146 Sum_probs=79.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
=++++|..|+|||||++++...... .+...+.+.+. ..+...+.. .-.++.|++ |. +.+....
T Consensus 8 KivviG~~~vGKTsll~~~~~~~~~-------~~~~~t~~~~~~~~~i~~~~~~-~~l~iwDt~-G~------~~~~~l~ 72 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGSTE-------SPYGYNMGIDYKTTTILLDGRR-VKLQLWDTS-GQ------GRFCTIF 72 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-------CCCCCcceeEEEEEEEEECCEE-EEEEEEeCC-Cc------HHHHHHH
Confidence 3679999999999999999853110 00000111111 011111111 112456763 31 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ..+|.+++ +-++.++..+.......+.+.... + -.+.+||.||.|+...... ..++.++..+..+
T Consensus 73 ~~~~---~~ad~ill-VfD~t~~~Sf~~~~~w~~~i~~~~--~-~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~-- 141 (189)
T cd04121 73 RSYS---RGAQGIIL-VYDITNRWSFDGIDRWIKEIDEHA--P-GVPKILVGNRLHLAFKRQV--ATEQAQAYAERNG-- 141 (189)
T ss_pred HHHh---cCCCEEEE-EEECcCHHHHHHHHHHHHHHHHhC--C-CCCEEEEEECccchhccCC--CHHHHHHHHHHcC--
Confidence 2221 36777777 233455555433221112222211 1 2568999999999654321 2233333333321
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ..+.+||++|.|++++..++..
T Consensus 142 ~-------------~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 142 M-------------TFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999888764
No 163
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.88 E-value=6.1e-09 Score=82.70 Aligned_cols=159 Identities=15% Similarity=0.104 Sum_probs=76.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|||||||+++++...-. ...+.+..... .......... -..++|++ |- ......+...
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~~~------~~~~~~~~~~~-~~~~~~~~~~-~~~i~Dt~-G~------~~~~~~~~~~ 67 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFP------ENVPRVLPEIT-IPADVTPERV-PTTIVDTS-SR------PQDRANLAAE 67 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC------ccCCCcccceE-eeeeecCCeE-EEEEEeCC-Cc------hhhhHHHhhh
Confidence 678999999999999999853210 01111100000 0000001111 12466763 32 1112222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
+ ...|.+++-. .+.++..+.... ...+.+... . .-.+.++|.||+|+.+..... .++.....+...++.
T Consensus 68 ~---~~ad~~ilv~-d~~~~~s~~~~~~~~~~~i~~~-~--~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~-- 137 (166)
T cd01893 68 I---RKANVICLVY-SVDRPSTLERIRTKWLPLIRRL-G--VKVPIILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE-- 137 (166)
T ss_pred c---ccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEEchhcccccchh-HHHHHHHHHHHHHhc--
Confidence 2 3567776633 344555443321 111112211 1 125589999999997754210 011111111111111
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
...++.+||++|.|++++...+...
T Consensus 138 ----------~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 138 ----------IETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred ----------ccEEEEeccccccCHHHHHHHHHHH
Confidence 1246789999999999998776543
No 164
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.88 E-value=1.7e-09 Score=91.16 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.6
Q ss_pred EEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 37 i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
|+|++||||||+.+.+.+- ..++++.+|.=||+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 6899999999999999664 447889999999986
No 165
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.88 E-value=4e-09 Score=84.79 Aligned_cols=156 Identities=23% Similarity=0.258 Sum_probs=82.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
--++++|+.||||||++++|.. .+..-..+..| .....+... ... ..+.|+ +|. +..+. +.
T Consensus 15 ~~ililGl~~sGKTtll~~l~~----~~~~~~~pT~g----~~~~~i~~~--~~~-~~~~d~-gG~--~~~~~-----~w 75 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKN----GEISETIPTIG----FNIEEIKYK--GYS-LTIWDL-GGQ--ESFRP-----LW 75 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHS----SSEEEEEEESS----EEEEEEEET--TEE-EEEEEE-SSS--GGGGG-----GG
T ss_pred EEEEEECCCccchHHHHHHhhh----ccccccCcccc----cccceeeeC--cEE-EEEEec-ccc--ccccc-----cc
Confidence 4568999999999999999983 33332333323 222222221 111 246777 443 12221 11
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH--hhc
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH--EIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~--~~~ 189 (263)
+.. ....|.+++-.++ .++..+.+.. .+...+... ... -+|.+|++||.|+.+.. ..+++...+. .+.
T Consensus 76 ~~y--~~~~~~iIfVvDs-sd~~~l~e~~~~L~~ll~~~-~~~-~~piLIl~NK~D~~~~~----~~~~i~~~l~l~~l~ 146 (175)
T PF00025_consen 76 KSY--FQNADGIIFVVDS-SDPERLQEAKEELKELLNDP-ELK-DIPILILANKQDLPDAM----SEEEIKEYLGLEKLK 146 (175)
T ss_dssp GGG--HTTESEEEEEEET-TGGGGHHHHHHHHHHHHTSG-GGT-TSEEEEEEESTTSTTSS----THHHHHHHTTGGGTT
T ss_pred eee--ccccceeEEEEec-ccceeecccccchhhhcchh-hcc-cceEEEEeccccccCcc----hhhHHHhhhhhhhcc
Confidence 111 1356777773332 3343332211 111111111 111 15588999999988764 2355655543 221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. ..-.++.+||.+|+|+.+..+||.+
T Consensus 147 ~~-----------~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 147 NK-----------RPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp SS-----------SCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cC-----------CceEEEeeeccCCcCHHHHHHHHHh
Confidence 00 1124678999999999999999864
No 166
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.86 E-value=8.8e-09 Score=83.31 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=76.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
|+++|.+|+|||||+++++...- ......+..++.. .+........-..+.|+ +|. +.+ ..+..
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-------~i~~~~~~~~~l~i~Dt-~G~------~~~-~~~~~ 67 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-------NIQGPNGKIIELALWDT-AGQ------EEY-DRLRP 67 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-------EEEecCCcEEEEEEEEC-CCc------hhH-HHHHH
Confidence 68999999999999999985421 1100001111100 01111001111245676 331 112 12222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh--hcccccccceeeCeEEeeEEEEecCCCCCCCCCc--chHHHHHHHHHhhc
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL--WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG--DSLDELEKEIHEIN 189 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~--~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~--~~~~~~~~~l~~~~ 189 (263)
.. ...+|.+++-.+ +.++..+.... +.. .+... ..-+|.++|.||+|+.+..... ...++..+..+..
T Consensus 68 ~~--~~~ad~ii~v~d-~~~~~s~~~~~~~~~~-~~~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~- 139 (187)
T cd04132 68 LS--YPDVDVLLICYA-VDNPTSLDNVEDKWFP-EVNHF---CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ- 139 (187)
T ss_pred Hh--CCCCCEEEEEEE-CCCHHHHHHHHHHHHH-HHHHh---CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc-
Confidence 21 246788877333 34444433221 111 11111 1125689999999987542100 0112222222222
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+..+.+.+||++|.|++++...+..
T Consensus 140 -------------~~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 140 -------------GAFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred -------------CCcEEEEccCCCCCCHHHHHHHHHH
Confidence 1124688999999999998877654
No 167
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.86 E-value=1.3e-08 Score=83.07 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.-++++|.+|+|||||+++++.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHH
Confidence 34689999999999999999985
No 168
>PLN03110 Rab GTPase; Provisional
Probab=98.86 E-value=1.1e-08 Score=85.11 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=75.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|+|||||++++++.. .. .... .|.+.+. ..+...+.... ..++++ +| ...+....
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~----~~-~~~~--~t~g~~~~~~~v~~~~~~~~-l~l~Dt-~G------~~~~~~~~ 78 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNE----FC-LESK--STIGVEFATRTLQVEGKTVK-AQIWDT-AG------QERYRAIT 78 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CC-CCCC--CceeEEEEEEEEEECCEEEE-EEEEEC-CC------cHHHHHHH
Confidence 47899999999999999998531 10 0111 1122221 11111111111 245566 33 12232222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ...+.+++ +.++.++..+.... ++. .+.... ..-++.++|.||+|+...... ..+. ...+...+
T Consensus 79 ~~~~---~~~~~~il-v~d~~~~~s~~~~~~~~~-~~~~~~--~~~~piiiv~nK~Dl~~~~~~--~~~~-~~~l~~~~- 147 (216)
T PLN03110 79 SAYY---RGAVGALL-VYDITKRQTFDNVQRWLR-ELRDHA--DSNIVIMMAGNKSDLNHLRSV--AEED-GQALAEKE- 147 (216)
T ss_pred HHHh---CCCCEEEE-EEECCChHHHHHHHHHHH-HHHHhC--CCCCeEEEEEEChhcccccCC--CHHH-HHHHHHHc-
Confidence 2222 35676666 22234444332221 111 111110 112568999999998654321 1122 22222211
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. .++.+||++|.|++++.+++.
T Consensus 148 ~~-------------~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 148 GL-------------SFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred CC-------------EEEEEeCCCCCCHHHHHHHHH
Confidence 11 477899999999999988775
No 169
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.86 E-value=1e-08 Score=96.62 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=23.0
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.|+++++|.+|+|||||+|+|..
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~ 26 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRG 26 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999999984
No 170
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.86 E-value=1.5e-08 Score=80.73 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-++++|.+|+|||||+++++.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999985
No 171
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.85 E-value=7.7e-09 Score=84.65 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=84.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~-~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~ 112 (263)
|+++|.+|||||||+|.|+ |.+...... ..+.|........... +.. ..++|+ ||..-.. ....+...+.
T Consensus 3 i~lvG~~g~GKSsl~N~il----g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~-i~viDT-PG~~d~~~~~~~~~~~i~ 74 (196)
T cd01852 3 LVLVGKTGAGKSATGNTIL----GREVFESKLSASSVTKTCQKESAVWD--GRR-VNVIDT-PGLFDTSVSPEQLSKEIV 74 (196)
T ss_pred EEEECCCCCCHHHHHHHhh----CCCccccccCCCCcccccceeeEEEC--CeE-EEEEEC-cCCCCccCChHHHHHHHH
Confidence 7899999999999999999 444333332 1233333222211111 111 257888 5543221 1233444454
Q ss_pred HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchH----HHHHHHHHh
Q 024744 113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSL----DELEKEIHE 187 (263)
Q Consensus 113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~----~~~~~~l~~ 187 (263)
+.+.. ...++.+++-... .......... -..+...+.-......++++||+|.+.....+..+ ..++..++.
T Consensus 75 ~~~~~~~~g~~~illVi~~-~~~t~~d~~~--l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 75 RCLSLSAPGPHAFLLVVPL-GRFTEEEEQA--VETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK 151 (196)
T ss_pred HHHHhcCCCCEEEEEEEEC-CCcCHHHHHH--HHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence 44432 2467887774432 2222211110 11122211111112378999999988754321111 334444444
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...... .+..... ++.++.++.+|.+.+++
T Consensus 152 c~~r~~---------~f~~~~~-~~~~~~q~~~Ll~~i~~ 181 (196)
T cd01852 152 CGGRYV---------AFNNKAK-GEEQEQQVKELLAKVES 181 (196)
T ss_pred hCCeEE---------EEeCCCC-cchhHHHHHHHHHHHHH
Confidence 432211 2233344 67777888888877763
No 172
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.85 E-value=2.5e-08 Score=81.77 Aligned_cols=167 Identities=16% Similarity=0.096 Sum_probs=76.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|||||||+|+|++........+......++... ....... .. -..++|+ +|.... .....+.++..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~-~l~l~Dt-pG~~~~--~~~~~~~l~~~ 76 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK-FP-NVTLWDL-PGIGST--AFPPDDYLEEM 76 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC-CC-CceEEeC-CCCCcc--cCCHHHHHHHh
Confidence 7899999999999999998532111001101111111111 0111000 00 1245676 443211 11112223322
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC---------CcchHHHHHHHH
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER---------SGDSLDELEKEI 185 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~---------~~~~~~~~~~~l 185 (263)
. ....|.+++...+- ..... ..+ ...+... . .+.++|+||+|+..+.+ .+..++.+++.+
T Consensus 77 ~--~~~~d~~l~v~~~~--~~~~d-~~~-~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 77 K--FSEYDFFIIISSTR--FSSND-VKL-AKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred C--ccCcCEEEEEeCCC--CCHHH-HHH-HHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 1 24678877743321 11111 111 1122221 1 23789999999965321 112344444444
Q ss_pred HhhcCCCeEEEeecCCCChhhhhccccC--Ccchhhhhhhhhhh
Q 024744 186 HEINSLAHVIRSVRCQVDLSEVLNCRAY--DATHVTRLEGLLEE 227 (263)
Q Consensus 186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~--~g~~~~~l~~~l~~ 227 (263)
....+.. .+....++.+|+. .+.+...|.+.+..
T Consensus 146 ~~~~~~~--------~~~~p~v~~vS~~~~~~~~~~~l~~~~~~ 181 (197)
T cd04104 146 LENLQEA--------GVSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred HHHHHHc--------CCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence 4333210 1234567888988 45777777766543
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.85 E-value=6.9e-09 Score=82.42 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||++++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999954
No 174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.85 E-value=3.4e-09 Score=84.55 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++|+|.+|+|||||+++++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999853
No 175
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.84 E-value=4.5e-09 Score=83.43 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|||||||+++++..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 176
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.84 E-value=1.3e-08 Score=81.47 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=74.8
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
++++|.+|+|||||+++++... . ......|.+.... .+...+... ...+.|+ +|. ..+.. +..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~----f---~~~~~~t~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~-l~~ 68 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHS----F---PDYHDPTIEDAYKQQARIDNEPA-LLDILDT-AGQ------AEFTA-MRD 68 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCC----C---CCCcCCcccceEEEEEEECCEEE-EEEEEeC-CCc------hhhHH-HhH
Confidence 6899999999999999998531 1 0000001110000 011111111 1245666 331 12222 222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
..- ...|.+++-.+ +.++..+.........+... ....-+|.++|.||+|+.+.... ..++..+..+.. .+
T Consensus 69 ~~~--~~~d~~ilv~d-~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~a~~~--~~- 139 (172)
T cd04141 69 QYM--RCGEGFIICYS-VTDRHSFQEASEFKKLITRV-RLTEDIPLVLVGNKVDLESQRQV--TTEEGRNLAREF--NC- 139 (172)
T ss_pred HHh--hcCCEEEEEEE-CCchhHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhhhhcCcc--CHHHHHHHHHHh--CC-
Confidence 221 24566666222 34444432221111112111 11112568999999998754322 112222222222 11
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.+||++|.|++++..++..
T Consensus 140 ------------~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 140 ------------PFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred ------------EEEEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999988764
No 177
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.84 E-value=4.1e-09 Score=88.87 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=42.0
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++++|+++..+++.++. +++|+||+|||||||+++|.+-
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998776 8999999999999999999863
No 178
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.84 E-value=8.7e-09 Score=83.39 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=74.9
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
++++|.+|+|||||+++++... . ..+...|.+.+. ..+..++. .....+.|++ |. ..+. .+.
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~----f---~~~~~~T~g~~~~~~~i~~~~~-~~~l~iwDt~-G~------~~~~-~~~ 66 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGE----F---DEDYIQTLGVNFMEKTISIRGT-EITFSIWDLG-GQ------REFI-NML 66 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----C---CCCCCCccceEEEEEEEEECCE-EEEEEEEeCC-Cc------hhHH-Hhh
Confidence 6789999999999999998531 1 011111122221 11111111 1112456662 21 1222 222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...+|.+++-.+ +.++..+.+.......+... . ....+ ++|.||+|+...... ...+.+.+..+.+...
T Consensus 67 ~~~--~~~a~~iilv~D-~t~~~s~~~i~~~~~~~~~~-~-~~~~p-ilVgnK~Dl~~~~~~-~~~~~~~~~~~~~a~~- 138 (182)
T cd04128 67 PLV--CNDAVAILFMFD-LTRKSTLNSIKEWYRQARGF-N-KTAIP-ILVGTKYDLFADLPP-EEQEEITKQARKYAKA- 138 (182)
T ss_pred HHH--CcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHh-C-CCCCE-EEEEEchhccccccc-hhhhhhHHHHHHHHHH-
Confidence 221 246788777333 44444433221101111111 1 11133 678999999642100 0011111112111110
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+ .+++.+||++|.|++++..++...
T Consensus 139 ---------~~-~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 139 ---------MK-APLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred ---------cC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 01 246789999999999999887653
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.83 E-value=1.9e-08 Score=97.45 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=83.4
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCC-cccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g-~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
..+.|+|+|+|..|+|||||+++|... ++ ...+.+ .|..+-...+... +.. ..++|+ +|- ..+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~GIT~~iga~~v~~~--~~~-ItfiDT-PGh------e~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGGITQHIGAYQVETN--GGK-ITFLDT-PGH------EAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCceeeeccEEEEEEC--CEE-EEEEEC-CCC------ccc
Confidence 357789999999999999999999742 21 111111 1121111112111 111 257888 442 223
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.....+. ....|.+++-.+......+.....+ . ...... ++.++++||+|+.+.. .+++...+..
T Consensus 351 ~~m~~rg---a~~aDiaILVVdAddGv~~qT~e~i--~-~a~~~~----vPiIVviNKiDl~~a~-----~e~V~~eL~~ 415 (787)
T PRK05306 351 TAMRARG---AQVTDIVVLVVAADDGVMPQTIEAI--N-HAKAAG----VPIIVAINKIDKPGAN-----PDRVKQELSE 415 (787)
T ss_pred hhHHHhh---hhhCCEEEEEEECCCCCCHhHHHHH--H-HHHhcC----CcEEEEEECccccccC-----HHHHHHHHHH
Confidence 2222222 2356777764432111111100011 0 011111 4589999999997542 3445444443
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..- +...++ ...+++++||++|.|+++|.+++..
T Consensus 416 ~~~----~~e~~g--~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 416 YGL----VPEEWG--GDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred hcc----cHHHhC--CCceEEEEeCCCCCCchHHHHhhhh
Confidence 211 111111 1135789999999999999988753
No 180
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.81 E-value=2.1e-08 Score=94.63 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=82.4
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~-~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.+.|+++++|.+|+|||||+++|... ++. ..+ .|.|..+....+.... ... ..++|+ ||- ..+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v~--~~e~~GIT~~ig~~~v~~~~-~~~-i~~iDT-PGh------e~F~ 149 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT----KVA--QGEAGGITQHIGAYHVENED-GKM-ITFLDT-PGH------EAFT 149 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC----Ccc--cccCCceeecceEEEEEECC-CcE-EEEEEC-CCC------cchh
Confidence 46689999999999999999999842 221 112 2222222211122111 111 247788 442 2232
Q ss_pred HHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744 109 QALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH 186 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~ 186 (263)
....+. ....|.+++-.+... .+... +.+ .. ..... +|.++++||+|+.+.. .+++.+.++
T Consensus 150 ~~r~rg---a~~aDiaILVVda~dgv~~qT~-e~i---~~-~~~~~----vPiIVviNKiDl~~~~-----~e~v~~~L~ 212 (587)
T TIGR00487 150 SMRARG---AKVTDIVVLVVAADDGVMPQTI-EAI---SH-AKAAN----VPIIVAINKIDKPEAN-----PDRVKQELS 212 (587)
T ss_pred hHHHhh---hccCCEEEEEEECCCCCCHhHH-HHH---HH-HHHcC----CCEEEEEECcccccCC-----HHHHHHHHH
Confidence 222211 245677776332211 11111 111 00 11112 4589999999997542 345555554
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
...-.. ..++ ....++++||++|+|+++|.+++.
T Consensus 213 ~~g~~~----~~~~--~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 213 EYGLVP----EDWG--GDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred HhhhhH----HhcC--CCceEEEEECCCCCChHHHHHhhh
Confidence 332100 0011 112578999999999999998875
No 181
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.81 E-value=8.9e-09 Score=85.84 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=73.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhh--cCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMIN--EGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~--~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|+|||||+++++..... .....|.+.+..... ..... .-..++|+ +|. +.+. .+
T Consensus 15 Ki~vvG~~gvGKTsli~~~~~~~f~-------~~~~~tig~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~-~~ 78 (219)
T PLN03071 15 KLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGK-IRFYCWDT-AGQ------EKFG-GL 78 (219)
T ss_pred EEEEECcCCCCHHHHHHHHhhCCCC-------CccCCccceeEEEEEEEECCeE-EEEEEEEC-CCc------hhhh-hh
Confidence 5789999999999999998753210 011111222211111 11111 11245666 332 1121 22
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ....+.+++ +-.+.++..+.........+... ..-++.++|.||+|+.+.... .+.+ . +.... .
T Consensus 79 ~~~~--~~~~~~~il-vfD~~~~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~~~v~---~~~~-~-~~~~~-~ 146 (219)
T PLN03071 79 RDGY--YIHGQCAII-MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK---AKQV-T-FHRKK-N 146 (219)
T ss_pred hHHH--cccccEEEE-EEeCCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhhhccCC---HHHH-H-HHHhc-C
Confidence 2221 135566655 22344444332221101111111 112568999999998654211 1222 1 11111 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
-..+.+||++|.|++++..++..
T Consensus 147 -------------~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 147 -------------LQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred -------------CEEEEcCCCCCCCHHHHHHHHHH
Confidence 13578999999999999888764
No 182
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.81 E-value=3.1e-08 Score=73.44 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=80.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|..|+|||||.++|-++.. .+.-+|--++.|. +|+ +|-. ... ..+-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~~---------------------IDT-PGEy-~~~-~~~Y~a- 57 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGD---------------------IDT-PGEY-FEH-PRWYHA- 57 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCccc---------------------cCC-chhh-hhh-hHHHHH-
Confidence 368999999999999999985421 1222333333322 233 2110 000 011122
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
++.....+|.|++- -++.+|... ..+.+... ...+.|-+++|+|+.+.. +++..+..|++.
T Consensus 58 --L~tt~~dadvi~~v-~~and~~s~-----f~p~f~~~----~~k~vIgvVTK~DLaed~----dI~~~~~~L~ea--- 118 (148)
T COG4917 58 --LITTLQDADVIIYV-HAANDPESR-----FPPGFLDI----GVKKVIGVVTKADLAEDA----DISLVKRWLREA--- 118 (148)
T ss_pred --HHHHhhccceeeee-ecccCcccc-----CCcccccc----cccceEEEEecccccchH----hHHHHHHHHHHc---
Confidence 22223567777662 223333221 11222222 123377799999999653 578888888765
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+..++|.+|+.+..|+++|.+.+..
T Consensus 119 -----------Ga~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 119 -----------GAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred -----------CCcceEEEeccCcccHHHHHHHHHh
Confidence 3457999999999999999987753
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.80 E-value=3.3e-08 Score=95.05 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=83.7
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcC--CCCcceeeeeeecCcceEeecchhH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEG--EGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
.+.|+|+|+|..|+|||||+++|.... ++. ....|.|..+....+... ..... ..++|+ +|- ..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~----~~~-~e~~GiTq~i~~~~v~~~~~~~~~k-ItfiDT-PGh------e~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ----IAQ-KEAGGITQKIGAYEVEFEYKDENQK-IVFLDT-PGH------EAF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc----Ccc-ccCCccccccceEEEEEEecCCceE-EEEEEC-CcH------HHH
Confidence 466899999999999999999998431 110 111121222111111110 01111 246787 442 233
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744 108 VQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI 185 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l 185 (263)
.....+.+ ...|.+++-.+... .+.....+. .+.. .. +|.++++||+|+.+.. .+++.+.+
T Consensus 309 ~~mr~rg~---~~aDiaILVVDA~dGv~~QT~E~I~----~~k~-~~----iPiIVViNKiDl~~~~-----~e~v~~eL 371 (742)
T CHL00189 309 SSMRSRGA---NVTDIAILIIAADDGVKPQTIEAIN----YIQA-AN----VPIIVAINKIDKANAN-----TERIKQQL 371 (742)
T ss_pred HHHHHHHH---HHCCEEEEEEECcCCCChhhHHHHH----HHHh-cC----ceEEEEEECCCccccC-----HHHHHHHH
Confidence 33333332 35677777432211 111111110 1111 11 5689999999997642 34455555
Q ss_pred HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.... +...++ ...+++++||++|.|+++|.+++..
T Consensus 372 ~~~~l----l~e~~g--~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 372 AKYNL----IPEKWG--GDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred HHhcc----chHhhC--CCceEEEEECCCCCCHHHHHHhhhh
Confidence 43211 011111 1235789999999999999988754
No 184
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.80 E-value=5e-08 Score=76.26 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=54.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-C--CCc--ceeeeeeecCcceEeecchh
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-E--GGA--LVEEWVELANGCICCTVKHS 106 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~-~--~~~--~~~~~~~l~~g~~~~~~~~~ 106 (263)
+++++|++||||||++..+... ..+.++.++..|++..... ...+... . ... ....+...+.|+.+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSG-GAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcc-cchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence 3689999999999999999764 4588999999997652211 1111110 0 000 00012222222222222222
Q ss_pred HHHHHHHHHHhccCCcEEEEcccCCCCc
Q 024744 107 LVQALEQLVQRKERLDHILLETTGLANP 134 (263)
Q Consensus 107 ~~~~l~~~~~~~~~~d~ilie~~G~~~p 134 (263)
..+.+ +.++ ...+|+|+|++.|....
T Consensus 80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~ 105 (148)
T cd03114 80 TPEVI-RVLD-AAGFDVIIVETVGVGQS 105 (148)
T ss_pred HHHHH-HHHH-hcCCCEEEEECCccChh
Confidence 33333 3333 25899999999997643
No 185
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.79 E-value=1.7e-08 Score=88.46 Aligned_cols=53 Identities=17% Similarity=0.033 Sum_probs=35.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhh-hhhhhc
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG-LLEEHQ 229 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~-~l~~~~ 229 (263)
+|.++|+||+|+.+.. .+.+.++... ...+++++||+.+.++++|.+ .+.++.
T Consensus 215 KPvI~VlNK~Dl~~~~-------~~~~~l~~~~-------------~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 215 KPMVIAANKADIPDAE-------NNISKLRLKY-------------PDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CcEEEEEEHHHccChH-------HHHHHHHhhC-------------CCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 3589999999986542 2222333222 234689999999999999986 465543
No 186
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=8.3e-09 Score=86.68 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=42.3
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++|+++|++.+|++.++++++++. +++|+||+|||||||++.+++
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999976899998875 899999999999999999987
No 187
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.76 E-value=1.2e-08 Score=87.24 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC--CCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~--~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~ 102 (263)
..+.+.+.|+|+++|+.|||||||+++|+.. ++..++ |.| .+.......-. .+..+ -+.|+ -+....
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a~Lp-sg~~v-lltDT--vGFisd 239 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSAHLP-SGNFV-LLTDT--VGFISD 239 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhccCC-CCcEE-EEeec--hhhhhh
Confidence 3445678899999999999999999999843 222222 222 33222222111 11111 12232 111233
Q ss_pred cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccc-----cccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQ-----LESAVRLDSIITDVVILNKVDLVSPERSGDS 177 (263)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~-----l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~ 177 (263)
+...+..+++..+..-..+|+ |+...++.+|..-.+....... +.+.-++.. .+=|=||+|..+..-
T Consensus 240 LP~~LvaAF~ATLeeVaeadl-llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~---mieVdnkiD~e~~~~---- 311 (410)
T KOG0410|consen 240 LPIQLVAAFQATLEEVAEADL-LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQN---MIEVDNKIDYEEDEV---- 311 (410)
T ss_pred CcHHHHHHHHHHHHHHhhcce-EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhH---HHhhccccccccccC----
Confidence 445566677777665566777 5567778888643322111011 111111111 333558888765431
Q ss_pred HHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 178 ~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. .....+++||.+|+|++++.+.+.
T Consensus 312 -------------e~----------E~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 312 -------------EE----------EKNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred -------------cc----------ccCCccccccccCccHHHHHHHHH
Confidence 00 011257899999999999988775
No 188
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.76 E-value=2.1e-08 Score=91.12 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=37.0
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.++++||+|+.+.+......+++.+.++... ....+++++||++|+|++.|.+++...
T Consensus 136 ~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 136 NIVIVQNKIDLVSKEKALENYEEIKEFVKGTV------------AENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred eEEEEEEccccCCHHHHHHHHHHHHhhhhhcc------------cCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 36889999999875421111223333222111 011257899999999999999998763
No 189
>PRK12736 elongation factor Tu; Reviewed
Probab=98.76 E-value=4e-08 Score=89.00 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|..++|||||+++|++
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~ 34 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITK 34 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHh
Confidence 588999999999999999985
No 190
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.76 E-value=2.3e-09 Score=88.65 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=43.4
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|+||+..++++.++. +++++||+|||||||+|.|++.
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc
Confidence 4678999999999999999999887 8999999999999999999854
No 191
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.76 E-value=2.1e-08 Score=76.61 Aligned_cols=53 Identities=23% Similarity=0.130 Sum_probs=34.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHH-HHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELE-KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~-~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.++++||+|+...... .... ........ ..+++.+|+.++.|+.++..++.
T Consensus 103 ~~~ivv~nk~D~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 103 IPIILVGNKIDLPEERVV----SEEELAEQLAKEL-------------GVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CcEEEEEeccccccccch----HHHHHHHHHHhhc-------------CCcEEEEecCCCCChHHHHHHHh
Confidence 458999999999876521 1111 11111111 23578899999999999888763
No 192
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.75 E-value=2.4e-08 Score=83.27 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
|+++|.+|+|||||+.+|+.
T Consensus 2 v~i~Gh~~~GKttL~~~ll~ 21 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLY 21 (219)
T ss_pred EEEecCCCCChHHHHHHHHH
Confidence 68999999999999999974
No 193
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.74 E-value=1.3e-08 Score=80.25 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=56.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc-----hhhhhcCCCCcceeeeeeecCcceEeecchh
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d-----~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 106 (263)
+++|+|++|||||||+++|+.. ..|.+++++.++.+. ..++ .......+ . ..+.+.+++.||.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~ag--a---~~v~~~~~~~~~~~~~~ 74 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHREAG--A---DQVIVASSRRYAFMHET 74 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHhCC--C---CEEEEecCCeEEEEEec
Confidence 4789999999999999999876 458899999988654 3333 22222211 1 12333355655542210
Q ss_pred -HHHHHHHHHHhccCCcEEEEcccCC
Q 024744 107 -LVQALEQLVQRKERLDHILLETTGL 131 (263)
Q Consensus 107 -~~~~l~~~~~~~~~~d~ilie~~G~ 131 (263)
....+.+++......|+||+|..+-
T Consensus 75 ~~~~~l~~ll~~~~~~D~vlVEG~k~ 100 (155)
T TIGR00176 75 QEERDLEALLDRLPDLDIILVEGFKD 100 (155)
T ss_pred CCCcCHHHHHhhCCCCCEEEECCCCC
Confidence 1224444444334589999988663
No 194
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.74 E-value=1e-08 Score=90.26 Aligned_cols=48 Identities=29% Similarity=0.447 Sum_probs=43.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+.|++++|+|+||+..++++.++. ++++.||+|||||||++.|.+-
T Consensus 2 ~~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 2 PKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999998776 7999999999999999999853
No 195
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.6e-08 Score=84.21 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=42.3
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++++++|++..+++++++. +++|+|++|+|||||+|.+.+.
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999887 7999999999999999999753
No 196
>CHL00071 tufA elongation factor Tu
Probab=98.73 E-value=3.7e-08 Score=89.66 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+++|||||+++|+..
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
No 197
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.73 E-value=8e-09 Score=98.94 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++|+|.+|+|||||+++|+.
T Consensus 27 i~iiGh~~~GKSTL~~~Ll~ 46 (632)
T PRK05506 27 FITCGSVDDGKSTLIGRLLY 46 (632)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 77999999999999999985
No 198
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.72 E-value=2.3e-08 Score=79.88 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=18.4
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++++|.+|+|||||++++..
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999975
No 199
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.9e-08 Score=81.66 Aligned_cols=45 Identities=27% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l 52 (263)
..+++++++++.+||+.+++.++++. +++++||+|+|||||++++
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHH
Confidence 46889999999999999999998665 8999999999999999887
No 200
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.72 E-value=2.1e-07 Score=88.28 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=45.1
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCC
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL 236 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~ 236 (263)
++.++++||+|+.+.. .+...+.++..... ...+++.+||++|.|+++|.+++......+ ...
T Consensus 123 ipiIiViNKiDl~~~~-----~~~~~~el~~~lg~-----------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p-~~~ 185 (595)
T TIGR01393 123 LEIIPVINKIDLPSAD-----PERVKKEIEEVIGL-----------DASEAILASAKTGIGIEEILEAIVKRVPPP-KGD 185 (595)
T ss_pred CCEEEEEECcCCCccC-----HHHHHHHHHHHhCC-----------CcceEEEeeccCCCCHHHHHHHHHHhCCCC-CCC
Confidence 3488999999986542 12333333332210 123578999999999999999887543322 223
Q ss_pred CCCCEEEEEEE
Q 024744 237 HDNNVRTLSIC 247 (263)
Q Consensus 237 ~~~~i~~~~~~ 247 (263)
.+.+++..++.
T Consensus 186 ~~~pl~~~V~~ 196 (595)
T TIGR01393 186 PDAPLKALIFD 196 (595)
T ss_pred CCCCeEEEEEE
Confidence 34456655554
No 201
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.72 E-value=4.8e-08 Score=81.43 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||+++++..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~ 23 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMER 23 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 579999999999999999853
No 202
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.71 E-value=3.3e-08 Score=78.91 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|||||||+++++..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 203
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=2.2e-08 Score=82.65 Aligned_cols=49 Identities=31% Similarity=0.419 Sum_probs=44.8
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.+.|++++|+++||++.++++.++. +++|+|++|+|||||++.++..
T Consensus 4 ~~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 4 SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred CCcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 347899999999999999999998776 7999999999999999999865
No 204
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.69 E-value=3.2e-08 Score=78.92 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||++++...
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999853
No 205
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.69 E-value=4.3e-08 Score=78.67 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||+.+++..
T Consensus 4 i~iiG~~~vGKSsli~~~~~~ 24 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTN 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999853
No 206
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.68 E-value=2.2e-08 Score=82.45 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=41.4
Q ss_pred ceEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|++++|++.| ++..++.++++. +|+|+|++|||||||+++|-.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 579999999999 999999998776 799999999999999999974
No 207
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.68 E-value=1.5e-08 Score=93.67 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=32.5
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhh
Q 024744 159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 221 (263)
Q Consensus 159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l 221 (263)
.++++||+|+++..+ ..++.+.+.++.+.... +.....+++++||++|+|++.+
T Consensus 163 iIvvvNKiD~~~~~~--~~~~~i~~~l~~~~~~~-------~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 163 LVVAVNKMDLVDYSE--EVFERIREDYLTFAEQL-------PGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred eEEEEEeeccccchh--HHHHHHHHHHHHHHHhc-------CCCCCceEEEEEeecCCCcccc
Confidence 678999999985431 13444444444322111 0012346899999999998754
No 208
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.67 E-value=3.2e-08 Score=82.85 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++|+|||||+|.|+..
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999854
No 209
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.3e-08 Score=87.55 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=40.6
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.|+++||+|+||+..++++.++. +++++||+|+|||||||.|.+.
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999998788888776 7999999999999999999753
No 210
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.1e-08 Score=84.94 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=48.3
Q ss_pred CCCCCCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|..-++-++.++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~~~~~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 1 MQEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CccccCCCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 445567788899999999999988889888776 8999999999999999999864
No 211
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.66 E-value=9e-08 Score=77.80 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||++++...
T Consensus 3 ivivG~~~vGKTsli~~~~~~ 23 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRG 23 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999853
No 212
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.66 E-value=8.9e-08 Score=86.44 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++|+|+||||||||+|+|++.
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~ 24 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLA 24 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999943
No 213
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.66 E-value=5.3e-08 Score=78.21 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||++++...
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~ 24 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTN 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999999853
No 214
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.66 E-value=2.5e-07 Score=79.52 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
|+|+|.+|+|||||+++|+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~ 21 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILY 21 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 215
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.65 E-value=1.5e-07 Score=86.33 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=37.9
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++++||+|+++.+......+++++.++... ....+++++||++|.|++.|.+.|.+
T Consensus 174 iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~------------~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 174 IIILQNKIDLVKEAQAQDQYEEIRNFVKGTI------------ADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHhhc------------cCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 7889999999875422112233333332211 12347899999999999999999875
No 216
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.65 E-value=1.2e-07 Score=77.25 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=77.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|..|+|||||++++....- ......+...+..... + .+. ..-..+.|++ |. +.+. .+.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~-----~--~~~-~~~l~i~Dt~-G~------e~~~-~l~ 68 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-----V--DGR-TVSLNLWDTA-GQ------EEYD-RLR 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEE-----E--CCE-EEEEEEEECC-Cc------hhhh-hhh
Confidence 478999999999999999985321 1000001111110000 1 111 1112466763 32 1221 233
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ...+|.+++- -.+.++..+.... .....+... .+ -+|.+||.||.|+.+... ..+.+ +.....
T Consensus 69 ~~~--~~~a~~~ilv-ydit~~~Sf~~~~~~w~~~i~~~--~~-~~piilvgNK~DL~~~~~---~~~~~----~~~~~~ 135 (191)
T cd01875 69 TLS--YPQTNVFIIC-FSIASPSSYENVRHKWHPEVCHH--CP-NVPILLVGTKKDLRNDAD---TLKKL----KEQGQA 135 (191)
T ss_pred hhh--ccCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhh--CC-CCCEEEEEeChhhhcChh---hHHHH----hhccCC
Confidence 322 2467777762 3355565543331 111112211 11 256899999999965421 01111 110000
Q ss_pred CeEEEe---ec-CCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 192 AHVIRS---VR-CQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 192 ~~i~~~---~~-~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
.+-.. .. .....-..+.+||++|.|++++..++....
T Consensus 136 -~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 136 -PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred -CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00000 00 000112467899999999999988877543
No 217
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.64 E-value=7.8e-08 Score=75.70 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=34.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.++++|+|+.|||||||+.+|+.. .+|.++++|.+..+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 579999999999999999999775 468999999988664
No 218
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=4.8e-08 Score=84.04 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=46.6
Q ss_pred CCCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 4 EEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 17 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 17 ETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred ccCCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567888999999999999988888887665 8999999999999999999854
No 219
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.64 E-value=5.4e-08 Score=81.39 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35689999999999988899998776 7999999999999999999854
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=98.63 E-value=1.7e-07 Score=84.93 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|.+++|||||+++|+.
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 221
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=5.1e-08 Score=82.97 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=42.9
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+|+++++++++++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 57889999999999988888888766 799999999999999999985
No 222
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.63 E-value=1.7e-07 Score=75.29 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=57.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-+.+.|+|++|||||+|+..|.....-. .+.+.++..+.. +.. ..... ..++|+ ||- -.++..+.+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--T~tS~e~n~~~~-----~~~-~~~~~-~~lvD~-PGH--~rlr~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--TVTSMENNIAYN-----VNN-SKGKK-LRLVDI-PGH--PRLRSKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEEECC-----GSS-TCGTC-ECEEEE-TT---HCCCHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC--eeccccCCceEE-----eec-CCCCE-EEEEEC-CCc--HHHHHHHHHhh
Confidence 4789999999999999999998642111 111222111011 111 11111 357898 552 23454433332
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPE 172 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~ 172 (263)
.. ...+..|++-.+...++..+.+.. ++.+.+.........++.+|+.||.|+..+.
T Consensus 71 ~~----~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 71 KY----LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HH----HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hc----hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 21 234666777455444443332211 1122222211223446799999999998764
No 223
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.63 E-value=4e-08 Score=87.16 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=43.4
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+..+|+++|++|+|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35689999999999999999998766 8999999999999999999864
No 224
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.63 E-value=2.7e-08 Score=90.40 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++++|..+||||||+++|+.
T Consensus 3 ~~~vGhvd~GKSTL~~~ll~ 22 (406)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLH 22 (406)
T ss_pred EEEECCCCCCchhhhHHHHH
Confidence 67999999999999999974
No 225
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=4.6e-08 Score=84.07 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=43.6
Q ss_pred CCCCCCCCCceEEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 1 MEDEEEDPPLAVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|||. ++++++++++++|++. .++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~~~~----~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 1 MEDK----NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCC----CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6776 6799999999999763 477877665 8999999999999999999864
No 226
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.63 E-value=1.7e-07 Score=88.78 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.4
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHc
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..+.|+|+++|.+|+|||||+++|.+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~ 28 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRG 28 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999999974
No 227
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.62 E-value=2.9e-08 Score=82.63 Aligned_cols=43 Identities=26% Similarity=0.472 Sum_probs=39.1
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~ 53 (263)
||+++||+|+|++..++++.++. +++++|++||||||+++.+-
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN 48 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN 48 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999998776 79999999999999987774
No 228
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.62 E-value=5.4e-08 Score=76.91 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++++|.+|+|||||+++++.
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999999874
No 229
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.62 E-value=4e-08 Score=84.43 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=43.5
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.++++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999988888887776 7999999999999999999864
No 230
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.61 E-value=1.4e-07 Score=85.76 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=36.4
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.++|+||+|+.+.++.....+++.+.++... ....+++++||++|.|+++|.+++...
T Consensus 142 iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 142 IVIVQNKIDLVSKERALENYEQIKEFVKGTV------------AENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred EEEEEEeeccccchhHHHHHHHHHHHhcccc------------CCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 6888999999875421111222322222110 012357899999999999999988763
No 231
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.60 E-value=4.3e-08 Score=85.22 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=41.9
Q ss_pred ceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++.+++++|+|| +..++++.++. +++++|++|||||||++.|++.
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999 69999998776 8999999999999999999864
No 232
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.60 E-value=5.1e-08 Score=85.25 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=42.6
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999998899988776 7999999999999999999864
No 233
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.60 E-value=7.2e-08 Score=80.04 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++++++++++|++...+++.++. +++|+|++|+|||||++.|.+.
T Consensus 6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456789999999999988888887776 7999999999999999999854
No 234
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=7.6e-08 Score=82.67 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=44.5
Q ss_pred CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.+.+++++++++++|++..++++.++. +++|+|++|||||||++.|++
T Consensus 15 ~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 15 PEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35667789999999999988899988776 799999999999999999985
No 235
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.59 E-value=1e-07 Score=75.04 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=78.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC-cceeeeeeecCcceEeecchhHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-ALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
|+++|.+|+|||||++++....-. .....|.+.+.........+ ..--++.+++ | .+.+ ..+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~-g------~~~~-~~~~~ 66 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFP-------ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTS-G------QERF-DSLRD 66 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTT-------SSSETTSSEEEEEEEEEETTEEEEEEEEEET-T------SGGG-HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhccc-------ccccccccccccccccccccccccccccccc-c------cccc-ccccc
Confidence 689999999999999999864211 01111122221111110001 1112455652 2 1222 22333
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ....|.+++-. .+.++..+..+....+.+..... ...+.+++.||.|+.+..+. ..++.++..+..+ .
T Consensus 67 ~~--~~~~~~~ii~f-d~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~- 136 (162)
T PF00071_consen 67 IF--YRNSDAIIIVF-DVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--V- 136 (162)
T ss_dssp HH--HTTESEEEEEE-ETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--S-
T ss_pred cc--ccccccccccc-ccccccccccccccccccccccc--ccccceeeeccccccccccc--hhhHHHHHHHHhC--C-
Confidence 32 24677777732 34555544332111122222111 11458889999999874432 2345555555443 2
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l 225 (263)
..+.+||+++.|+.++...+
T Consensus 137 ------------~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 137 ------------PYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp ------------EEEEEBTTTTTTHHHHHHHH
T ss_pred ------------EEEEEECCCCCCHHHHHHHH
Confidence 35778999999998876554
No 236
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=1.4e-06 Score=68.99 Aligned_cols=155 Identities=20% Similarity=0.201 Sum_probs=85.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCC-------------CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKH-------------GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG 97 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~-------------~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (263)
.-.-|+++|+-||||||+++++..... +++...+..|+|. +...++.. ..++++ ||
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--------~~~~~~~~--v~Lfgt-PG 77 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--------IELDEDTG--VHLFGT-PG 77 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--------eEEcCcce--EEEecC-CC
Confidence 344678999999999999999975321 1122334444443 33222111 135565 44
Q ss_pred ceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744 98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDS 177 (263)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~ 177 (263)
+...+.+.+.+.+ . ..-.++-..... |..... ..+-+.+..... ++.+|++||.|+.++. -
T Consensus 78 -------q~RF~fm~~~l~~-g-a~gaivlVDss~-~~~~~a-~~ii~f~~~~~~----ip~vVa~NK~DL~~a~----p 138 (187)
T COG2229 78 -------QERFKFMWEILSR-G-AVGAIVLVDSSR-PITFHA-EEIIDFLTSRNP----IPVVVAINKQDLFDAL----P 138 (187)
T ss_pred -------cHHHHHHHHHHhC-C-cceEEEEEecCC-CcchHH-HHHHHHHhhccC----CCEEEEeeccccCCCC----C
Confidence 3445566666653 3 333333122222 222111 111111222211 5599999999998875 3
Q ss_pred HHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 178 ~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+++++.+..-+-. .+++.++|.++++..+..+.+...
T Consensus 139 pe~i~e~l~~~~~~-------------~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 139 PEKIREALKLELLS-------------VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHHHHHhccCC-------------CceeeeecccchhHHHHHHHHHhh
Confidence 47778877654311 257889999999987776665544
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=98.59 E-value=2.4e-07 Score=83.98 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|..++|||||+++|+.
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHH
Confidence 588999999999999999985
No 238
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.58 E-value=6.3e-08 Score=84.79 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=42.7
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|+|++..++++.++. +++++|++|||||||++.|++.
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3589999999999999999998776 7999999999999999999864
No 239
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.57 E-value=4.9e-07 Score=74.46 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|.++++|++|||||||+++|...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 46889999999999999999854
No 240
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=3.4e-08 Score=79.30 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=45.6
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
||+++||+|+||+..++++.+.. +..++||+|||||||+..+.+. .....+.+-..+.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeec
Confidence 58899999999999999998664 8999999999999999887643 2234455544443
No 241
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.57 E-value=3.8e-08 Score=81.46 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=42.1
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++|+|+||+..++++.++. +.+++|++||||||.++.|+..
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl 51 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL 51 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc
Confidence 468999999999999999998776 8999999999999999999853
No 242
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.56 E-value=2.4e-07 Score=75.02 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|-+|+|||||+++++..
T Consensus 8 ivvvGd~~vGKTsli~~~~~~ 28 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKD 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 243
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.55 E-value=9.9e-08 Score=79.04 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=38.1
Q ss_pred eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++++|+|.|+.. ++++++++. +++|+|++|||||||+|.|-.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999763 788888776 899999999999999999964
No 244
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.55 E-value=3e-07 Score=73.41 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=34.2
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
.+..|+++|+|++|||||||+++|+.. ..|.+++++.++.+
T Consensus 3 ~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 3 KTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 356789999999999999999999865 34788999988644
No 245
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.4e-07 Score=80.59 Aligned_cols=42 Identities=36% Similarity=0.597 Sum_probs=37.8
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l 52 (263)
||++++|+|.|.. ..++++.++. +++|+|++|||||||++.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~i 52 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI 52 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHH
Confidence 6899999999986 5788888776 8999999999999999998
No 246
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.54 E-value=1.1e-07 Score=81.30 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+..+.+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 8 ~~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 8 NQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred cCCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999988889888776 7999999999999999999864
No 247
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=80.48 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++++++++++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 2 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CcceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 57789999999999988889887766 799999999999999999985
No 248
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=6.6e-08 Score=79.44 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=43.0
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++..||..+++++.++. +++++|++|||||||+++|+..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998887 8999999999999999999865
No 249
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.53 E-value=3.1e-07 Score=74.46 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++|+|.+|+|||||++++..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999974
No 250
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.53 E-value=1.1e-07 Score=78.49 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=41.2
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999988889988776 8999999999999999999864
No 251
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.53 E-value=3.1e-07 Score=76.22 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecCCCc
Q 024744 5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGE 70 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~~g~ 70 (263)
.+...++|.+++|+.+|++++.+.+.+-. -.+|+|++|||||||++.++...+ ...+.++...+|.
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 34556889999999999999999998776 489999999999999999988743 4566777777775
No 252
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.5e-07 Score=77.90 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=41.6
Q ss_pred ceEEEecceeEeCCcc----cCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++++|+++.|+... +++++++. +++|+|.+|||||||.+.|+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999988 99998887 799999999999999999984
No 253
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.52 E-value=2.9e-07 Score=76.36 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|.+|||||||+++++.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~ 31 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLT 31 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999987763
No 254
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=1.1e-07 Score=80.23 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=40.9
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999988889888776 7999999999999999999864
No 255
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.52 E-value=4.1e-07 Score=83.27 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|..++|||||+++|+.
T Consensus 9 ~v~i~Ghvd~GKSTL~~~ll~ 29 (426)
T TIGR00483 9 NVAFIGHVDHGKSTTVGHLLY 29 (426)
T ss_pred EEEEEeccCCcHHHHHHHHHH
Confidence 578999999999999999974
No 256
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=75.65 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=42.2
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|+++|++.+-.+++.++++++. +.+|+||+|||||||++.|+++
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 58999999999999999999886 8999999999999999999975
No 257
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.51 E-value=2.4e-07 Score=74.70 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||++++...
T Consensus 4 iv~vG~~~vGKTsli~~~~~~ 24 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKD 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.51 E-value=4.8e-07 Score=83.14 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|..++|||||+.+|+.
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 259
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.51 E-value=1.3e-07 Score=80.47 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=41.3
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999988888887665 7999999999999999999865
No 260
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1e-07 Score=79.38 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.4
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999998889888776 7999999999999999999864
No 261
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1.4e-07 Score=80.56 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=43.9
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+..+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 8 ~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457789999999999988888887776 7999999999999999999854
No 262
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.2e-07 Score=80.96 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=40.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999988888887765 7999999999999999999864
No 263
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.5e-07 Score=86.15 Aligned_cols=48 Identities=29% Similarity=0.395 Sum_probs=44.3
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|+||+.+++++.++. +.+++|-+|||||||++.|...
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv 57 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV 57 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc
Confidence 46799999999999999999999887 8999999999999999999853
No 264
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1.2e-07 Score=78.64 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=39.2
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988899988776 7999999999999999999854
No 265
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.2e-07 Score=81.50 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=40.5
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999988899988776 7999999999999999999864
No 266
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=9.1e-08 Score=80.50 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=39.5
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988899988776 7999999999999999999864
No 267
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.6e-07 Score=81.37 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=41.5
Q ss_pred CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+++++|++++|+ +..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 55899999999996 57788887776 8999999999999999999864
No 268
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.50 E-value=1.7e-06 Score=82.28 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=44.2
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCC
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL 236 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~ 236 (263)
++.++|+||+|+.+.. .+...+.++..... +..+++.+||++|.|+++|.+++......+ ...
T Consensus 127 lpiIvViNKiDl~~a~-----~~~v~~ei~~~lg~-----------~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P-~~~ 189 (600)
T PRK05433 127 LEIIPVLNKIDLPAAD-----PERVKQEIEDVIGI-----------DASDAVLVSAKTGIGIEEVLEAIVERIPPP-KGD 189 (600)
T ss_pred CCEEEEEECCCCCccc-----HHHHHHHHHHHhCC-----------CcceEEEEecCCCCCHHHHHHHHHHhCccc-cCC
Confidence 3488999999986542 23333334332110 123578999999999999999986543322 223
Q ss_pred CCCCEEEEEEE
Q 024744 237 HDNNVRTLSIC 247 (263)
Q Consensus 237 ~~~~i~~~~~~ 247 (263)
.+.+.+.+++.
T Consensus 190 ~~~pl~~~Vfd 200 (600)
T PRK05433 190 PDAPLKALIFD 200 (600)
T ss_pred CCCCceEEEEE
Confidence 34455544443
No 269
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.50 E-value=1.3e-07 Score=77.79 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999998889888776 7999999999999999999864
No 270
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.50 E-value=1.2e-07 Score=85.17 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++...+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 8 ~~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 8 PSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred hccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45667789999999999998888887665 7999999999999999999864
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.50 E-value=1.3e-07 Score=77.65 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=40.5
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999988899988776 7999999999999999999864
No 272
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.50 E-value=1.6e-07 Score=78.56 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=40.0
Q ss_pred ceEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999862 478887665 8999999999999999999864
No 273
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.49 E-value=3e-07 Score=78.05 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=62.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----chhHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----KHSLV 108 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~~~~~ 108 (263)
..|+++|.+|+|||||+|+|+ |.+.+.+..-.++|.......... .+.. ..++|+ ||...... .....
T Consensus 32 ~~IllvG~tGvGKSSliNaLl----g~~~~~v~~~~~~T~~~~~~~~~~--~g~~-i~vIDT-PGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIF----GERKAATSAFQSETLRVREVSGTV--DGFK-LNIIDT-PGLLESVMDQRVNRKIL 103 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCceEEEEEEEEEE--CCeE-EEEEEC-CCcCcchhhHHHHHHHH
Confidence 368899999999999999999 444444433223333322211111 1222 257888 55432211 11222
Q ss_pred HHHHHHHHhccCCcEEEEcc-cCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC
Q 024744 109 QALEQLVQRKERLDHILLET-TGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER 173 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~-~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~ 173 (263)
..+.+.+. ...++.+++-. .+...... .+.. +...+...+..+.....++|+||+|...++.
T Consensus 104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~-~d~~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDY-LDLP-LLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHh-ccCCCEEEEEEcCCCCCCCH-HHHH-HHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 33444443 24677766522 11111111 1100 0111222111111123899999999987653
No 274
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.8e-07 Score=80.65 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=44.8
Q ss_pred CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++.++++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred cCCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35667799999999999988888887766 8999999999999999999853
No 275
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.5e-07 Score=79.38 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=41.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 79999999999988889888776 8999999999999999999864
No 276
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2e-07 Score=80.10 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=43.6
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++.+++++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456789999999999998899988776 7999999999999999999853
No 277
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.49 E-value=4.9e-07 Score=75.93 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+|+|||+|+++++..
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~ 36 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKD 36 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4679999999999999999854
No 278
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.49 E-value=7.7e-08 Score=79.78 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=35.9
Q ss_pred EeeEEEEecCCCCCCCC---CcchHHHHHHHHHhhcCCCeEEEeec----CCCChhhhhccccCCcchh
Q 024744 157 ITDVVILNKVDLVSPER---SGDSLDELEKEIHEINSLAHVIRSVR----CQVDLSEVLNCRAYDATHV 218 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~---~~~~~~~~~~~l~~~~p~~~i~~~~~----~~~~~~~ii~isa~~g~~~ 218 (263)
++.++++||+|++..+. ..+..+++.+.++++|+.+..+.... ...+ ..++..|++.+.+.
T Consensus 124 ~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~-~nv~~~s~~~~w~~ 191 (213)
T cd04167 124 LPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPEN-GNVCFASSKFGFCF 191 (213)
T ss_pred CCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCC-CeEEEEecCCCeEE
Confidence 45899999999873211 01245677888888887765543311 1111 23556677776654
No 279
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=2e-07 Score=80.04 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=43.6
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++.+++++|++++|++++++++.++. +++|+|++|||||||++.|.+.
T Consensus 16 ~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 16 EEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CCCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999988899988776 7999999999999999999854
No 280
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.49 E-value=1.6e-07 Score=77.87 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=39.3
Q ss_pred eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++| ++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999 467788887766 7999999999999999999854
No 281
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.49 E-value=1.5e-07 Score=79.56 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=40.1
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +.+++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999998 77889888776 8999999999999999999864
No 282
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.48 E-value=1.5e-07 Score=74.56 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=41.5
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l 52 (263)
.+++.+.++-|+||+.++++++++. +|.|+|.+|||||||++++
T Consensus 4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCi 52 (256)
T COG4598 4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI 52 (256)
T ss_pred ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHH
Confidence 4689999999999999999999887 9999999999999999998
No 283
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.6e-07 Score=80.47 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=44.2
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++...+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 3 ESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred ccccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456789999999999998899988776 8999999999999999999864
No 284
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1.5e-07 Score=79.07 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=40.4
Q ss_pred CceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999975 4578887665 7999999999999999999854
No 285
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.6e-07 Score=78.89 Aligned_cols=45 Identities=31% Similarity=0.428 Sum_probs=39.7
Q ss_pred eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++. .++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999876 788887665 8999999999999999999864
No 286
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.48 E-value=2.6e-07 Score=75.87 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=33.4
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.++|.||+|+..... ..+.+ . +...+. -..+.+||++|.|+.++..++..
T Consensus 100 ~piilvgNK~Dl~~~~v---~~~~~-~-~~~~~~--------------~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 100 IPIVLCGNKVDVKDRKV---KAKSI-T-FHRKKN--------------LQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred CCEEEEEECcccccccC---CHHHH-H-HHHHcC--------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 56899999999864321 11111 1 111111 13578999999999999988764
No 287
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.48 E-value=1.8e-07 Score=79.42 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=41.0
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+++..+++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 69999999999988889988776 7999999999999999999854
No 288
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=2e-07 Score=79.69 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=42.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.++++++|+++.|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999988888887665 7999999999999999999853
No 289
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.47 E-value=1.5e-07 Score=79.18 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=40.4
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999988889887766 8999999999999999999864
No 290
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=3.8e-07 Score=77.64 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4489999999999988888887766 8999999999999999999854
No 291
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.8e-07 Score=79.71 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=41.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 489999999999988888887665 8999999999999999999864
No 292
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.47 E-value=1.4e-07 Score=78.48 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=38.4
Q ss_pred EEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999987 6788887665 8999999999999999999854
No 293
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.47 E-value=1.9e-07 Score=79.70 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=41.3
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|+++.++++.++. +++|+|++|||||||++.|.+.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999988888887665 7999999999999999999864
No 294
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.47 E-value=2.6e-07 Score=74.42 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|-+|+|||||+.+++..
T Consensus 4 ivv~G~~~vGKTsli~~~~~~ 24 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSN 24 (176)
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 689999999999999999853
No 295
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.47 E-value=4e-07 Score=82.52 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|..++|||||+++|+.
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~ 34 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITT 34 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHh
Confidence 588999999999999999974
No 296
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.8e-07 Score=79.76 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=40.9
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999998899887766 7999999999999999999864
No 297
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.47 E-value=1.9e-07 Score=77.66 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=39.4
Q ss_pred eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++. +++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999876 788887665 7999999999999999999864
No 298
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.47 E-value=1.8e-07 Score=78.96 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=41.2
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999988889888776 7999999999999999999864
No 299
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.46 E-value=1.7e-07 Score=78.33 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=39.4
Q ss_pred eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|+++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999875 688887665 8999999999999999999864
No 300
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.8e-07 Score=78.73 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=42.9
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 9 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred cceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999988889888776 7999999999999999999854
No 301
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.8e-07 Score=78.99 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=40.8
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999988888887665 8999999999999999999864
No 302
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2e-07 Score=78.77 Aligned_cols=45 Identities=31% Similarity=0.333 Sum_probs=40.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++...+++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999988888888776 7999999999999999999864
No 303
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.46 E-value=1.7e-07 Score=81.90 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=40.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999998899987665 8999999999999999999864
No 304
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.46 E-value=1.7e-07 Score=77.77 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=38.6
Q ss_pred eEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999965 4578887665 7999999999999999999864
No 305
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=2e-07 Score=78.73 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=40.8
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999988888887766 7999999999999999999864
No 306
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=2.3e-07 Score=79.82 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=42.0
Q ss_pred CCCceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++.++++++|++++|+ +..++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CcceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999995 45788887665 8999999999999999999864
No 307
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.45 E-value=3e-07 Score=78.18 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=40.8
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|++
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 389999999999988889887776 899999999999999999985
No 308
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.45 E-value=1.9e-07 Score=78.79 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=40.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999988888887766 8999999999999999999864
No 309
>PLN03127 Elongation factor Tu; Provisional
Probab=98.45 E-value=5.2e-07 Score=82.86 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|..++|||||+++|++
T Consensus 63 ni~iiGhvd~GKSTL~~~L~~ 83 (447)
T PLN03127 63 NVGTIGHVDHGKTTLTAAITK 83 (447)
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999973
No 310
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.7e-07 Score=73.96 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=43.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.|.+++++++|.||+...-++.++. +.+|+|-+|||||||+++|...
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc
Confidence 5699999999999999999998886 8999999999999999999854
No 311
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.45 E-value=2.1e-07 Score=79.25 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=41.4
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999988888887766 7999999999999999999864
No 312
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.45 E-value=2.1e-07 Score=78.89 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=40.4
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999988888887766 7999999999999999999864
No 313
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.45 E-value=1.9e-07 Score=78.38 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988889887765 8999999999999999999864
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.45 E-value=2.5e-07 Score=86.62 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999998889888776 7999999999999999999864
No 315
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=2.1e-07 Score=82.90 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=41.8
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3489999999999998888887666 7999999999999999999864
No 316
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.44 E-value=1.9e-07 Score=77.10 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988899888776 7999999999999999999854
No 317
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=3.3e-07 Score=77.94 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=40.8
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 489999999999988888887766 799999999999999999985
No 318
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.44 E-value=1.9e-07 Score=84.55 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=42.0
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 379999999999999999998776 7999999999999999999864
No 319
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.44 E-value=3.4e-07 Score=78.46 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=43.0
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+...++++++||+++|++.+++++.++. +++|+|++|||||||++.|..
T Consensus 5 ~~~~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 5 NGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999988888887766 799999999999999999984
No 320
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.44 E-value=1.6e-07 Score=78.18 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=38.8
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887665 8999999999999999999854
No 321
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.44 E-value=2.5e-07 Score=79.07 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=40.8
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999998899988766 7999999999999999999864
No 322
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.44 E-value=2e-07 Score=77.17 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=39.2
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887765 7999999999999999999864
No 323
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.43 E-value=2e-07 Score=78.02 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=39.1
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999988888887766 7999999999999999999853
No 324
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=3.3e-07 Score=78.03 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=41.5
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++++++++++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999998899888765 899999999999999999984
No 325
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=3.5e-07 Score=78.78 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=43.6
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++.++++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 20 ~~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 20 SDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457799999999999988888887665 8999999999999999999854
No 326
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.43 E-value=2.2e-07 Score=77.34 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.8
Q ss_pred EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ .+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999987 7888887665 8999999999999999999864
No 327
>PRK10218 GTP-binding protein; Provisional
Probab=98.43 E-value=3.7e-06 Score=79.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.-|+|+|..++|||||+++|+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~ 27 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQ 27 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 356789999999999999999985
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.43 E-value=2e-07 Score=74.00 Aligned_cols=44 Identities=32% Similarity=0.411 Sum_probs=38.9
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|+|||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887665 8999999999999999999854
No 329
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=3.3e-07 Score=78.00 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=41.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 379999999999988889988776 8999999999999999999854
No 330
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.43 E-value=1.9e-07 Score=83.28 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=41.0
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 469999999999998888877665 7999999999999999999864
No 331
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=5.3e-07 Score=76.62 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=41.2
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 479999999999988888887665 7999999999999999999854
No 332
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=3.4e-07 Score=77.85 Aligned_cols=47 Identities=34% Similarity=0.451 Sum_probs=42.2
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++.++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999988889988776 7999999999999999999854
No 333
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.42 E-value=2.5e-07 Score=76.55 Aligned_cols=44 Identities=32% Similarity=0.404 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++...+++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887776 7999999999999999999864
No 334
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.42 E-value=1.8e-07 Score=77.07 Aligned_cols=43 Identities=30% Similarity=0.494 Sum_probs=37.5
Q ss_pred EEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 13 RIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999988 7888887665 7999999999999999999854
No 335
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=9e-07 Score=71.72 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=71.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
+-|.++|+.+||||+|+-.|+... .+..+.+.++.. .. .+.+. .. ..++|+ ||- ..+...+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs--~~~TvtSiepn~-a~-----~r~gs-~~--~~LVD~-PGH------~rlR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS--HRGTVTSIEPNE-AT-----YRLGS-EN--VTLVDL-PGH------SRLRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC--ccCeeeeeccce-ee-----EeecC-cc--eEEEeC-CCc------HHHHHHHH
Confidence 578899999999999999998652 222444444432 10 11111 11 257888 442 23344444
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
+.......+..|++.++....+.+..+.. ++.+.+..........+.+|+-||.|+..+...+...+.+++.|..++
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence 44432345667777555555444432211 111222111112223558889999999877533223344444444443
No 336
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.42 E-value=2.2e-07 Score=78.21 Aligned_cols=44 Identities=34% Similarity=0.394 Sum_probs=38.9
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4689999999988888887766 7999999999999999999854
No 337
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=3.4e-07 Score=78.64 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=43.1
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-+.+.|++++|+++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 15 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345689999999999988888887766 7999999999999999999854
No 338
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=3.3e-07 Score=77.82 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=40.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++++++++.|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 689999999999988888887665 899999999999999999974
No 339
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=3.4e-07 Score=78.18 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=41.3
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++|++++|++.++++++++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 379999999999988889887665 7999999999999999999854
No 340
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.42 E-value=3.2e-07 Score=81.16 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=43.6
Q ss_pred CCCCCceEEEecceeEeCC-------------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 5 EEDPPLAVRIDETTHEFSN-------------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++..+++++++||+++|+. .++++++++. +++|+|.+|||||||++.|++.
T Consensus 2 ~~~~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 2 TEGKKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred CCCCCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5677899999999999963 3567777666 7999999999999999999864
No 341
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.42 E-value=2.4e-07 Score=82.60 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=41.2
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999998889887766 7999999999999999999864
No 342
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.42 E-value=8.5e-07 Score=68.82 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=78.3
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
+.|.|..||||||+++++. +..+..+++.+|.. +. .+... +.. -.+.|+ +|- .+ +.+.=+..
T Consensus 19 iLiLGLdNsGKTti~~kl~----~~~~~~i~pt~gf~--Ik--tl~~~--~~~-L~iwDv-GGq--~~----lr~~W~nY 80 (185)
T KOG0073|consen 19 ILILGLDNSGKTTIVKKLL----GEDTDTISPTLGFQ--IK--TLEYK--GYT-LNIWDV-GGQ--KT----LRSYWKNY 80 (185)
T ss_pred EEEEecCCCCchhHHHHhc----CCCccccCCcccee--eE--EEEec--ceE-EEEEEc-CCc--ch----hHHHHHHh
Confidence 5689999999999999999 54455556655531 11 11111 111 245666 442 11 22222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHhh-cccccc-cceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH--HHhhcC
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVLW-LDDQLE-SAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE--IHEINS 190 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~-~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~--l~~~~p 190 (263)
. +..|.++. +.+.+|+..+.+... +...+. +.... .+.+|+.||.|+..+-. .+.+... |..+.+
T Consensus 81 f---estdglIw-vvDssD~~r~~e~~~~L~~lL~eerlaG---~~~Lvlank~dl~~~l~----~~~i~~~~~L~~l~k 149 (185)
T KOG0073|consen 81 F---ESTDGLIW-VVDSSDRMRMQECKQELTELLVEERLAG---APLLVLANKQDLPGALS----LEEISKALDLEELAK 149 (185)
T ss_pred h---hccCeEEE-EEECchHHHHHHHHHHHHHHHhhhhhcC---CceEEEEecCcCccccC----HHHHHHhhCHHHhcc
Confidence 2 24455544 233466655543211 111111 11111 23889999999985432 2344322 333433
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. .-+++.+||.+|+++.+-.+|+.
T Consensus 150 s~-----------~~~l~~cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 150 SH-----------HWRLVKCSAVTGEDLLEGIDWLC 174 (185)
T ss_pred cc-----------CceEEEEeccccccHHHHHHHHH
Confidence 22 12578899999976655555554
No 343
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=6e-07 Score=77.49 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=42.5
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++.++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4589999999999998899888776 7999999999999999999864
No 344
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.41 E-value=3.7e-07 Score=78.13 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=42.4
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++|+++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4589999999999998889888776 8999999999999999999864
No 345
>PRK10908 cell division protein FtsE; Provisional
Probab=98.41 E-value=2.6e-07 Score=77.07 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=39.5
Q ss_pred eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++| ++...+++.++. +++|+|++|||||||++.|...
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999 667788887665 7999999999999999999864
No 346
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.1e-07 Score=77.50 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=38.3
Q ss_pred EEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999987 6788887665 8999999999999999999854
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.4e-07 Score=88.87 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=41.5
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|.++||+++||+..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999998876 7999999999999999999875
No 348
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=3.8e-07 Score=77.47 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=40.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999988888887665 7999999999999999999854
No 349
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=3.4e-07 Score=77.65 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=41.1
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|+++.|++...+++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999988888887776 7999999999999999999853
No 350
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.4e-07 Score=74.61 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=38.7
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887665 7999999999999999999854
No 351
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.2e-07 Score=76.79 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=38.8
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887665 7999999999999999999854
No 352
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.41 E-value=2.6e-07 Score=77.44 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++.|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887776 8999999999999999999864
No 353
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.6e-07 Score=77.94 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=38.9
Q ss_pred EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999987 7888887766 8999999999999999999864
No 354
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.5e-06 Score=69.47 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=82.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC-cceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-ALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
--++++|-.++||||||++.+... ..+.++.|+++|...-...-.+ ..--++.|+++ .+.|...+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-------fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-------QERFrsli 88 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-------QERFRSLI 88 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-------hcccccceeeeEEEEEEEEEcCcEEEEEEEeccc-------HHHHhhhh
Confidence 456799999999999999998531 1222333455543222111111 11125677643 23344444
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
-...+ ...+++| +-++.+...+.++ -|+++..... ...-+-.++|-||.||++..+. ..++=...-++++-
T Consensus 89 psY~R---ds~vavi-VyDit~~~Sfe~t~kWi~dv~~e~--gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a 160 (221)
T KOG0094|consen 89 PSYIR---DSSVAVI-VYDITDRNSFENTSKWIEDVRRER--GSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNA 160 (221)
T ss_pred hhhcc---CCeEEEE-EEeccccchHHHHHHHHHHHHhcc--CCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCc
Confidence 44432 3444444 2223343333221 1223322221 1111236678899999987532 22222223333322
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+.+||+.|.|+.++...+...
T Consensus 161 ---------------~f~etsak~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 161 ---------------EFIETSAKAGENVKQLFRRIAAA 183 (221)
T ss_pred ---------------EEEEecccCCCCHHHHHHHHHHh
Confidence 34678999999999888777643
No 355
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.40 E-value=3.1e-07 Score=86.93 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=42.9
Q ss_pred CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++|++++|+ +..++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999998 78899998776 7999999999999999999865
No 356
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.40 E-value=3.4e-07 Score=78.58 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=39.4
Q ss_pred ceEEEecceeEeCC---------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN---------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~---------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++||+++|++ .+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999963 3577877665 8999999999999999999864
No 357
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=4.4e-07 Score=77.14 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999988888887665 8999999999999999999854
No 358
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.40 E-value=9.1e-06 Score=68.55 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||+++|+..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~ 22 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYT 22 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999853
No 359
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.40 E-value=5e-07 Score=70.50 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=46.4
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH--HccCCCCeEEEEecCC
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI--LNGKHGKRIAVILNEF 68 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l--~~~~~~~~~~ii~~~~ 68 (263)
+.|+++++++.||...++-++.+. .+++.||+|||||||++.| ++-.......|..+.|
T Consensus 1 msirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f 66 (242)
T COG4161 1 MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred CceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence 368999999999999999887665 7899999999999999987 3333445555555554
No 360
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.40 E-value=2.6e-07 Score=75.72 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999998889887766 7999999999999999999864
No 361
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=4.1e-07 Score=77.28 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=40.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++++++++|+++.++++.++. +++|+|++|||||||++.|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999988888887765 899999999999999999985
No 362
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=3.3e-07 Score=78.29 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.-+++.+++++++||+..++++.++. +++|+|++|||||||++.|.+.
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999998776 8999999999999999999864
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.39 E-value=4.3e-06 Score=73.44 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
-.+++++|++||||||++.+|... ..+.++.++..|..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 358999999999999999999764 45788999988864
No 364
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.39 E-value=3.5e-07 Score=78.01 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.++++++++.|++...+++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999988888888776 8999999999999999999865
No 365
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.39 E-value=2e-06 Score=83.40 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++.-|+|+|.+|+|||||+++|+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~ 32 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILF 32 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999974
No 366
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=5e-07 Score=78.33 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=43.0
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999988888887765 7999999999999999999854
No 367
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.39 E-value=4.3e-06 Score=79.34 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=88.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccC----CCCeEEEEecC-------CCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK----HGKRIAVILNE-------FGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~----~~~~~~ii~~~-------~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~ 102 (263)
-|+|+|..++|||||+++|+... ...++.--.-| -|.|+......+.+ .+.. ..++|+ +|.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~--~~~k-inlIDT-PGh---- 74 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY--NGTK-INIVDT-PGH---- 74 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE--CCEE-EEEEEC-CCH----
Confidence 57999999999999999998531 11111100001 11111111111111 1111 246777 442
Q ss_pred cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELE 182 (263)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~ 182 (263)
.++...+...+. .+|.+++-.+....+.+.....+ . .... .. ++.++++||+|+.+... ....+++.
T Consensus 75 --~DF~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l-~-~a~~-~~----ip~IVviNKiD~~~a~~-~~v~~ei~ 141 (594)
T TIGR01394 75 --ADFGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVL-K-KALE-LG----LKPIVVINKIDRPSARP-DEVVDEVF 141 (594)
T ss_pred --HHHHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHH-H-HHHH-CC----CCEEEEEECCCCCCcCH-HHHHHHHH
Confidence 445555554443 56777774444333332211111 1 1111 12 34789999999875421 11233444
Q ss_pred HHHHhhcCCCeEEEeecCCCChhhhhccccCCcc----------hhhhhhhhhhhhccCCCCCCCCCCEEEEEEEc
Q 024744 183 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLHDNNVRTLSICE 248 (263)
Q Consensus 183 ~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~----------~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~ 248 (263)
+.+..+... ..... -+++.+||++|. |+..|.+.+......+ ....+.++...++..
T Consensus 142 ~l~~~~g~~-------~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P-~~~~~~pl~~~V~~i 208 (594)
T TIGR01394 142 DLFAELGAD-------DEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP-KGDLDEPLQMLVTNL 208 (594)
T ss_pred HHHHhhccc-------ccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC-CCCCCCCEEEEEEEE
Confidence 444332210 01111 146788999985 6777877766543322 122344565555543
No 368
>PRK00007 elongation factor G; Reviewed
Probab=98.39 E-value=2.1e-06 Score=83.24 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++.-|+|+|.+|+|||||+++|+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~ 32 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILF 32 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999974
No 369
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.38 E-value=2.7e-07 Score=78.45 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|++++|+++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999988888888775 7999999999999999999864
No 370
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.38 E-value=2.8e-07 Score=76.15 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=37.3
Q ss_pred EEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 13 RIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 13 ~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999987 7788887665 7999999999999999999854
No 371
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.38 E-value=3.6e-07 Score=85.42 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=41.7
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999988899988775 7999999999999999999864
No 372
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.38 E-value=2.4e-07 Score=76.75 Aligned_cols=43 Identities=35% Similarity=0.427 Sum_probs=37.6
Q ss_pred EEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 367999999988888887665 7999999999999999999854
No 373
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.38 E-value=3.4e-07 Score=76.24 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=38.5
Q ss_pred eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++ .+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999975 4578877665 8999999999999999999854
No 374
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.38 E-value=3.7e-07 Score=75.02 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++...+++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999998889887665 7999999999999999999865
No 375
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3.9e-07 Score=79.05 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=39.4
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999984 3588887766 8999999999999999999864
No 376
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.9e-07 Score=78.65 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=41.1
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++|++.++++.|++..+++++++. .+++.|++|||||||++.|.+
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 468999999999999999988776 799999999999999999975
No 377
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=3e-07 Score=81.81 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=39.2
Q ss_pred eEEEecceeEeC----CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS----NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~----~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 488999999998 35788887665 7999999999999999999864
No 378
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=5.4e-07 Score=79.36 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=41.8
Q ss_pred CCCceEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...++|++++++++|++ .++++++++. +++|+|++|||||||++.|.+.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999975 3588887766 8999999999999999999864
No 379
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=5.1e-07 Score=78.30 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=42.7
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.+.+++++++++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 35 GGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CCceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 367789999999999988888887665 799999999999999999985
No 380
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.37 E-value=3.7e-07 Score=85.46 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=41.9
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 589999999999988889988776 8999999999999999999864
No 381
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.37 E-value=4.4e-07 Score=78.13 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=40.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999998899988765 8999999999999999999864
No 382
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.37 E-value=2.5e-07 Score=73.48 Aligned_cols=45 Identities=31% Similarity=0.411 Sum_probs=38.0
Q ss_pred eEEEecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++.+++|.++|+..+--=+..++ +++|+|++|||||||+|-+.+-
T Consensus 1 ~l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 1 MLALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 46789999999997766555555 8999999999999999999864
No 383
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.37 E-value=5.4e-07 Score=81.32 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=68.3
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH--
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL-- 107 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~-- 107 (263)
...+.++|.|+||+|||||+|.++. ..+.|-...|.| ..+-.+-... ..+-.+++++ ||.+-.-+.+.-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtr----advevqpYaFTT-ksL~vGH~dy---kYlrwQViDT-PGILD~plEdrN~I 236 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTR----ADDEVQPYAFTT-KLLLVGHLDY---KYLRWQVIDT-PGILDRPEEDRNII 236 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccc----cccccCCccccc-chhhhhhhhh---heeeeeecCC-ccccCcchhhhhHH
Confidence 4556889999999999999999984 333333333332 3221111111 0111356666 665432221111
Q ss_pred -HHHHHHHHHhccCCcE-EEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744 108 -VQALEQLVQRKERLDH-ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI 185 (263)
Q Consensus 108 -~~~l~~~~~~~~~~d~-ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l 185 (263)
...+-.++. -.+.+ -+.+.++.+.-+.-.+. -+...+...|. ..+.++|+||+|+...+...+.-+++.+.+
T Consensus 237 EmqsITALAH--LraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFa---NK~~IlvlNK~D~m~~edL~~~~~~ll~~~ 310 (620)
T KOG1490|consen 237 EMQIITALAH--LRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFA---NKVTILVLNKIDAMRPEDLDQKNQELLQTI 310 (620)
T ss_pred HHHHHHHHHH--hhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhc---CCceEEEeecccccCccccCHHHHHHHHHH
Confidence 112222222 12222 24556665443322221 11223333322 144899999999998875543333343333
No 384
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=5.9e-07 Score=76.37 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=41.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 479999999999988888888776 8999999999999999999864
No 385
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=3.5e-07 Score=81.71 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=40.3
Q ss_pred eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++| ++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 58999999999 888888887665 7999999999999999999864
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.37 E-value=3.3e-07 Score=71.28 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=37.8
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++++++|++.+.+++.++. +++|+|++|+|||||++.|.+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4688999999887788887665 799999999999999999984
No 387
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.37 E-value=3.8e-07 Score=81.89 Aligned_cols=45 Identities=27% Similarity=0.418 Sum_probs=40.5
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999998888887665 7999999999999999999864
No 388
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=5.3e-07 Score=77.95 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=40.2
Q ss_pred ceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++|+++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999975 4688887765 8999999999999999999864
No 389
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.37 E-value=3.5e-07 Score=81.18 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=38.7
Q ss_pred eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|++++++++|++ .+++++.++. +++|+|++|||||||++.|...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999963 4688887765 8999999999999999999764
No 390
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=4.2e-07 Score=78.32 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999995 56788888776 8999999999999999999864
No 391
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=5e-07 Score=78.37 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=39.3
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999964 3588888776 7999999999999999999864
No 392
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.36 E-value=4.1e-07 Score=76.82 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=39.1
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887765 7999999999999999999854
No 393
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=6.4e-07 Score=76.80 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+..++|++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 11 ~~~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred cCCCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457889999999999988889887766 8999999999999999999854
No 394
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=3.5e-07 Score=75.66 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=38.4
Q ss_pred EEEecceeEeCCcccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++...+++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999988888886554 7999999999999999999864
No 395
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=4.9e-07 Score=78.53 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=40.2
Q ss_pred CceEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...++++|++++|++. .++++.++. +++|+|++|||||||++.|++.
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999864 378887665 7999999999999999999864
No 396
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.36 E-value=4.8e-07 Score=84.29 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=41.1
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999988899988775 7999999999999999999864
No 397
>PRK12739 elongation factor G; Reviewed
Probab=98.36 E-value=2.6e-06 Score=82.50 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++.-++|+|.+|+|||||+++|+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~ 30 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILY 30 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999975
No 398
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.35 E-value=9.7e-07 Score=72.80 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=40.7
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.+++++++++|++ ..++++.++. +++|+|++|+|||||++.|++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467999999999986 4688887766 7999999999999999999853
No 399
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.35 E-value=3.8e-07 Score=75.08 Aligned_cols=42 Identities=31% Similarity=0.387 Sum_probs=37.2
Q ss_pred EecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 14 IDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++|+++.|++++++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999988889887766 7999999999999999999854
No 400
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=5.6e-07 Score=77.81 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=40.4
Q ss_pred ceEEEecceeEeCC------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999974 4588888775 8999999999999999999864
No 401
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=7.4e-07 Score=75.64 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=41.0
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999988899988776 8999999999999999999854
No 402
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=5.8e-07 Score=80.82 Aligned_cols=48 Identities=31% Similarity=0.416 Sum_probs=42.0
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++++++++|++..++++.++. +++|+|++|||||||++.|...
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35579999999999988888877665 7999999999999999999864
No 403
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.34 E-value=4.8e-07 Score=77.90 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=39.6
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +..++++.++. +++|+|++|||||||++.|.+.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999995 57788887766 7999999999999999999864
No 404
>PRK14974 cell division protein FtsY; Provisional
Probab=98.34 E-value=5.6e-06 Score=73.09 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
..+++++|++|+||||++.+|... ..|.+++++..|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 358999999999999999998753 3467888887764
No 405
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.34 E-value=2.7e-07 Score=74.46 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=39.3
Q ss_pred eEEEecceeEeCCcc-cCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
|+++.+++|+|++.. ++++.++- ++++.|++||||||+++.|..
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat 50 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH
Confidence 578999999999955 88888776 899999999999999999974
No 406
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.34 E-value=3.4e-07 Score=68.34 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
|+|+|.+|||||||+++|+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999954
No 407
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=5.2e-07 Score=77.96 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=38.7
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999975 3578877665 7999999999999999999864
No 408
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=5.7e-07 Score=70.90 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=30.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV 74 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~ 74 (263)
.++++|+||+|||||+|+|. +.+...+.+.+|+|...
T Consensus 104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~T~~~ 140 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGETKVW 140 (157)
T ss_pred EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCeeEeE
Confidence 56799999999999999999 66667788888876543
No 409
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.34 E-value=5.6e-07 Score=75.13 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=38.5
Q ss_pred eEEEecceeEeCC-------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999963 3578887666 7999999999999999999864
No 410
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.33 E-value=4.8e-07 Score=75.50 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=39.1
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|+|||||++.|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887766 8999999999999999999854
No 411
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=7.1e-07 Score=83.53 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=41.9
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 589999999999988899988776 7999999999999999999864
No 412
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.33 E-value=9.8e-07 Score=74.78 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=40.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999988888887766 7999999999999999999854
No 413
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=4.9e-07 Score=76.42 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=38.7
Q ss_pred EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999998 7788887766 7999999999999999999864
No 414
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=6.3e-07 Score=77.27 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=40.1
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +..+++++++. +++|+|++|||||||++.|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 799999999996 56788887776 8999999999999999999864
No 415
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.33 E-value=5.7e-07 Score=73.99 Aligned_cols=44 Identities=20% Similarity=0.518 Sum_probs=37.8
Q ss_pred EEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|+++|++. .++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4689999999874 578887665 7999999999999999999853
No 416
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.7e-07 Score=84.04 Aligned_cols=47 Identities=30% Similarity=0.402 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred CceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999988889888776 7999999999999999999864
No 417
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=6.1e-07 Score=77.45 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=39.5
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|+ ...++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 689999999996 45688887776 7999999999999999999864
No 418
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.32 E-value=7.6e-07 Score=71.98 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=37.5
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++| ++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999 77776655 7999999999999999999864
No 419
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.8e-07 Score=84.60 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=41.1
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|+++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999998899998876 8999999999999999999864
No 420
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.32 E-value=6.2e-06 Score=69.46 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.3
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+|.++++|+.||||||++++|++.
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 468899999999999999999999853
No 421
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=8.4e-07 Score=75.33 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=40.1
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|+++.|++.+++++.++. +++|+|++|||||||++.|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 58999999999988888887765 799999999999999999985
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=5.5e-07 Score=72.20 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.6
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999887888887665 7999999999999999999864
No 423
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.32 E-value=5.3e-07 Score=74.65 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=38.2
Q ss_pred EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999965 5788887776 7999999999999999999864
No 424
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.32 E-value=1.9e-06 Score=74.35 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|.+|+|||||+|+|..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~ 26 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFN 26 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHc
Confidence 467999999999999999984
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=7.9e-07 Score=85.39 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=43.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.++|++++++++|++..+++++++. +++|+|++|||||||++.|++.
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999998899988776 7999999999999999999875
No 426
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=9.4e-07 Score=75.11 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=41.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|++..++++.++. +++|+|++|+|||||++.|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 379999999999988899988766 8999999999999999999854
No 427
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=6.4e-07 Score=77.72 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=39.3
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|+++|++ +.++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999975 3688887666 8999999999999999999864
No 428
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.31 E-value=1.4e-06 Score=72.73 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|.+|+|||||+++++..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~ 24 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKD 24 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999999853
No 429
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.31 E-value=1.3e-06 Score=72.99 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=42.5
Q ss_pred CCCCceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
....+++++++++++|++ ..++++.++. +++|+|++|||||||++.|+..
T Consensus 6 ~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345788999999999975 3578887665 8999999999999999999854
No 430
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=7.8e-07 Score=71.18 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=38.2
Q ss_pred EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999876 778887665 8999999999999999999854
No 431
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.31 E-value=5.7e-07 Score=76.71 Aligned_cols=44 Identities=27% Similarity=0.355 Sum_probs=40.0
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999998899988776 7999999999999999999864
No 432
>PLN03126 Elongation factor Tu; Provisional
Probab=98.31 E-value=4.3e-06 Score=77.37 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++++|.+++|||||+++|+.
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~ 103 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTM 103 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 433
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.31 E-value=1.9e-06 Score=74.68 Aligned_cols=130 Identities=20% Similarity=0.266 Sum_probs=63.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~ 109 (263)
+...|+++|.+|+||||++|+|+ |.+++.++.-.+++.......... .+.. ..++|+ +|..... ......+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~~~~~~~--~G~~-l~VIDT-PGL~d~~~~~e~~~~ 108 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPMMVSRTR--AGFT-LNIIDT-PGLIEGGYINDQAVN 108 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEEEEEEEE--CCeE-EEEEEC-CCCCchHHHHHHHHH
Confidence 44578999999999999999999 665555544333222111100111 1222 257888 6643221 1122223
Q ss_pred HHHHHHHhccCCcEEEEccc-CCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744 110 ALEQLVQRKERLDHILLETT-GLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE 172 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~-G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~ 172 (263)
.++..+. ...+|.+|+-.. +....... .+.+ ..+...+.-+.....++++|++|..+++
T Consensus 109 ~ik~~l~-~~g~DvVLyV~rLD~~R~~~~DkqlL---k~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 109 IIKRFLL-GKTIDVLLYVDRLDAYRVDTLDGQVI---RAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHhh-cCCCCEEEEEeccCcccCCHHHHHHH---HHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 3333332 246888887421 11111111 1111 1111111111112389999999987653
No 434
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=9.1e-07 Score=75.68 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=41.7
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
=++++++|++++|++..++++.++. +++|+|++|+|||||++.|.+.
T Consensus 5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3579999999999988888887665 8999999999999999999864
No 435
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.31 E-value=1.2e-06 Score=75.17 Aligned_cols=38 Identities=26% Similarity=0.100 Sum_probs=28.2
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA 77 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~ 77 (263)
++|+|+||||||||+|+|+ +.+. .+.+.+++|+....+
T Consensus 1 igivG~PN~GKSTLfn~Lt----~~~~-~~~n~pftTi~p~~g 38 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT----KAGA-EAANYPFCTIEPNVG 38 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh----CCCC-ccccccccchhceee
Confidence 5799999999999999999 5444 456666666554433
No 436
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.31 E-value=5.9e-07 Score=86.29 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=41.6
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++||+..+++++++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 79999999999998899998776 7999999999999999999865
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.31 E-value=6.7e-07 Score=72.01 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=37.6
Q ss_pred EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999775 678877665 7999999999999999999854
No 438
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.31 E-value=6e-07 Score=80.33 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=41.1
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++++++|++..++++.++. +++|+|++|||||||++.|...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999998889887766 7999999999999999999864
No 439
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.30 E-value=2.6e-06 Score=71.82 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred EEEE-EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHH
Q 024744 33 GVTV-ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQA 110 (263)
Q Consensus 33 ~vv~-i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~ 110 (263)
|+.+ ++|..|+|||||+|+|.. .....+..-... .++............ ..+.|+ ||..-...+ .+....
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~----~~~~~v~~vg~~-t~~~~~~~~~~~~~~--l~lwDt-PG~gdg~~~D~~~r~~ 110 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQ----GEVKEVSKVGVG-TDITTRLRLSYDGEN--LVLWDT-PGLGDGKDKDAEHRQL 110 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHh----ccCceeeecccC-CCchhhHHhhccccc--eEEecC-CCcccchhhhHHHHHH
Confidence 4544 999999999999999983 222333322211 222222222221111 235677 554221111 113333
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
+.+.+ .+.|++|+-..|..........++ .+.+..... .+.++++|-+|...+
T Consensus 111 ~~d~l---~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~~----~~~i~~VtQ~D~a~p 163 (296)
T COG3596 111 YRDYL---PKLDLVLWLIKADDRALGTDEDFL-RDVIILGLD----KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHh---hhccEEEEeccCCCccccCCHHHH-HHHHHhccC----ceeEEEEehhhhhcc
Confidence 44443 367877774443221111111111 111111111 338889999997655
No 440
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1e-06 Score=82.87 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=42.1
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++++++++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999988889888776 7999999999999999999854
No 441
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=9.2e-07 Score=74.02 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=39.0
Q ss_pred eEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-+++++++++|++ ...+++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999985 4688887665 7999999999999999999854
No 442
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.30 E-value=1e-06 Score=73.24 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=39.1
Q ss_pred eEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-+++++++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999976 5688887765 7999999999999999999854
No 443
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=8.1e-07 Score=77.22 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=39.3
Q ss_pred eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999975 4688887776 7999999999999999999864
No 444
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=1.2e-06 Score=76.65 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=43.4
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 446689999999999998889887776 8999999999999999999854
No 445
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.30 E-value=4.3e-06 Score=71.80 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++|+|.+|||||||+++|+.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 446
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=1e-06 Score=76.32 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=40.9
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 468999999999975 4588887765 8999999999999999999864
No 447
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.30 E-value=7.5e-07 Score=72.82 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=36.4
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++....+ .++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999998755444 5544 8999999999999999999854
No 448
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.29 E-value=6.5e-07 Score=72.26 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=37.7
Q ss_pred EEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999887888887776 8999999999999999999854
No 449
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.1e-06 Score=75.19 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=41.5
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999988889888776 7999999999999999999853
No 450
>PLN03073 ABC transporter F family; Provisional
Probab=98.29 E-value=1.7e-06 Score=83.94 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc-----CCCCeEEEEecC
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG-----KHGKRIAVILNE 67 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~-----~~~~~~~ii~~~ 67 (263)
+.+-+|+++|++++||+...+++.++. .++|+|++|||||||++.|.+. .++.++.++.++
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 566789999999999998899998776 7999999999999999999752 235566666554
No 451
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.29 E-value=8.4e-07 Score=83.90 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=41.8
Q ss_pred CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+++++|++++|+ +..+++++++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999998 67889988776 7999999999999999999864
No 452
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.29 E-value=1e-06 Score=71.97 Aligned_cols=46 Identities=30% Similarity=0.332 Sum_probs=39.9
Q ss_pred ceEEEecceeEeCC------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+++++++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999976 5788887766 7999999999999999999853
No 453
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.29 E-value=8.7e-07 Score=75.99 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=38.9
Q ss_pred eEEEecceeEeCC---------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN---------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~---------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|+++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999963 5678887666 7999999999999999999864
No 454
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=1.2e-06 Score=75.08 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++.+.++.++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 3 SEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred CCCCceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4678999999999999998889887665 8999999999999999999854
No 455
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=8.9e-07 Score=74.38 Aligned_cols=44 Identities=32% Similarity=0.416 Sum_probs=38.0
Q ss_pred EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999875 788887665 7999999999999999999854
No 456
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=7.7e-07 Score=76.74 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=39.2
Q ss_pred eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|+ ...++++.++. +++|+|++|||||||++.|++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999997 45688888776 8999999999999999999864
No 457
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.29 E-value=8.8e-07 Score=72.73 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=38.9
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999988888887665 8999999999999999999854
No 458
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=9.6e-07 Score=77.27 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=39.3
Q ss_pred eEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|++++++++|++. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999753 478887776 7999999999999999999865
No 459
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.4e-06 Score=78.02 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=88.6
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc-ccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~-t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.+.|+|.+.|----|||||+-.|-+. .+...+.|. |..+-.+.+.........--|+|+ || .
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDT-PG----------H 65 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDT-PG----------H 65 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcC------ccccccCCceeeEeeeEEEEeccCCCceEEEEcC-Cc----------H
Confidence 46799999999999999999999632 233444432 222222222211000001236777 43 1
Q ss_pred HHHHHHHHhc-cCCcEEEE--cccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744 109 QALEQLVQRK-ERLDHILL--ETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI 185 (263)
Q Consensus 109 ~~l~~~~~~~-~~~d~ili--e~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l 185 (263)
+++-.+..+- .-.|.+++ +.+.-..|.....+.. ..... .|.+|++||+|+.+.. ..++...+
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h-----ak~a~----vP~iVAiNKiDk~~~n-----p~~v~~el 131 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH-----AKAAG----VPIVVAINKIDKPEAN-----PDKVKQEL 131 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH-----HHHCC----CCEEEEEecccCCCCC-----HHHHHHHH
Confidence 2333332222 22344443 3344444554433221 11123 4599999999998653 46666666
Q ss_pred HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.+.. +....|+.. ..++++||++|+|+++|...+.
T Consensus 132 ~~~g----l~~E~~gg~--v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 132 QEYG----LVPEEWGGD--VIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HHcC----CCHhhcCCc--eEEEEeeccCCCCHHHHHHHHH
Confidence 6542 122223322 4678999999999999998765
No 460
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.28 E-value=9.3e-06 Score=66.45 Aligned_cols=91 Identities=21% Similarity=0.313 Sum_probs=50.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe--ecchhHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKHSLV 108 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~--~~~~~~~ 108 (263)
.+++++|++|+||||.+-+|... ..+++++++..|... .+-..++-... +...+ -++ ....+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a-------~~l~v----p~~~~~~~~~~~ 69 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYA-------EILGV----PFYVARTESDPA 69 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHH-------HHHTE----EEEESSTTSCHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHH-------HHhcc----ccchhhcchhhH
Confidence 37899999999999999999653 239999999988653 33222222110 01111 111 1111222
Q ss_pred HHHHHHHH--hccCCcEEEEcccCCCCch
Q 024744 109 QALEQLVQ--RKERLDHILLETTGLANPA 135 (263)
Q Consensus 109 ~~l~~~~~--~~~~~d~ilie~~G~~~p~ 135 (263)
+.+.+.+. ...+.|+|+|+|.|.....
T Consensus 70 ~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 70 EIAREALEKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcchhh
Confidence 22322222 1256899999999987644
No 461
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=8.8e-07 Score=76.93 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.8
Q ss_pred eEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|++++++++|+.. .++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 58999999999742 478887776 7999999999999999999854
No 462
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.28 E-value=1.1e-06 Score=74.93 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=39.9
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|-++++++++++| +...+++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999 56788887766 7999999999999999999854
No 463
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.28 E-value=9.5e-07 Score=75.90 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=39.5
Q ss_pred eEEEecceeEeC---------CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS---------NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~---------~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++||+++|+ +..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999997 46788887766 7999999999999999999854
No 464
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.28 E-value=9e-07 Score=70.94 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=37.1
Q ss_pred EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|+|||||++.|++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999976 4577776665 7999999999999999999854
No 465
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.28 E-value=1.2e-07 Score=76.30 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=46.9
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~ 70 (263)
..+.++++.|+|+.++++++.++. +|++.||+||||||.+..++ +++..+.|.
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~--------Glv~~d~G~ 60 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV--------GLVRPDSGK 60 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEE--------EEEecCCce
Confidence 468899999999999999999887 89999999999999999888 666666665
No 466
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=1.1e-06 Score=75.98 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=39.7
Q ss_pred ceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999974 3488887766 7999999999999999999864
No 467
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.26 E-value=9.5e-07 Score=70.81 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=32.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d 75 (263)
.++++|+||+|||||+|+|+ +.+.+.+.+.+|+|....
T Consensus 119 ~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~T~~~~ 156 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLK----RSRACNVGATPGVTKSMQ 156 (172)
T ss_pred EEEEEcCCCCCHHHHHHHHh----CcccceecCCCCeEcceE
Confidence 68899999999999999999 667777888899876543
No 468
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.26 E-value=8.7e-07 Score=74.70 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=39.3
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++.+.+++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999998899887765 8999999999999999999864
No 469
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.26 E-value=1.2e-06 Score=84.28 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=43.1
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+..++++++++++|++..+++++++. +++|+|++|||||||++.|++.
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45689999999999998899988776 7999999999999999999865
No 470
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.4e-06 Score=71.13 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.0
Q ss_pred ceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
-.+++++++++|++ ..++++.++. +++|+|++|||||||++.|..
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999975 5678887665 899999999999999999984
No 471
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.26 E-value=1.2e-06 Score=81.64 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++++++|++++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45689999999999988888888776 8999999999999999999854
No 472
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1.3e-06 Score=77.41 Aligned_cols=46 Identities=28% Similarity=0.287 Sum_probs=40.4
Q ss_pred ceEEEecceeEe----CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEF----SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~----~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++++| |...++++.++. +++|+|.+|||||||++.|++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 379999999999 446788888776 7999999999999999999864
No 473
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=1.3e-06 Score=75.36 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=39.5
Q ss_pred ceEEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++. .+++++++. +++|+|++|||||||++.|++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 379999999999752 478887665 8999999999999999999864
No 474
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.25 E-value=8.4e-07 Score=71.41 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=34.0
Q ss_pred ecceeEeCCcccCCCc-ceE---EEEEEccCCCcHHHHHHHHHc
Q 024744 15 DETTHEFSNSHENDDV-SVG---VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~---vv~i~G~~gaGKSTLin~l~~ 54 (263)
.|++++||+..++.+. .++ +++|+|++|||||||++.|..
T Consensus 4 ~~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 4 PDCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 5799999998888764 332 899999999999999999984
No 475
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=1.1e-06 Score=73.83 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=39.4
Q ss_pred EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|++++++++|++...+++.++. +++|+|++|+|||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999988889887665 8999999999999999999865
No 476
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.25 E-value=1.2e-06 Score=82.85 Aligned_cols=47 Identities=30% Similarity=0.382 Sum_probs=42.8
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++++|+++.+++++++. +++|+|++|||||||++.|++.
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 373 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ 373 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999998899998776 7999999999999999999864
No 477
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.25 E-value=1.2e-06 Score=69.80 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=37.6
Q ss_pred EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|++++++++|++ .+.+++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999964 5678887666 8999999999999999999864
No 478
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=2.5e-05 Score=69.84 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE--eecchhHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHSLV 108 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~~~~~ 108 (263)
.+++|+|++||||||++.+|... ..|.+++++..|... .+...+..... +. .|+-+ +.....+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~ya----------e~-lgipv~v~~d~~~L~ 309 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYV----------KT-IGFEVIAVRDEAAMT 309 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHh----------hh-cCCcEEecCCHHHHH
Confidence 58999999999999999999653 357889999988653 22222221111 00 11111 12224445
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCC
Q 024744 109 QALEQLVQRKERLDHILLETTGLAN 133 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~ 133 (263)
..+..+.. ..+.|+|||++.|...
T Consensus 310 ~aL~~lk~-~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 310 RALTYFKE-EARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHh-ccCCCEEEEeCccccC
Confidence 55554432 2368999999999755
No 479
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.5e-06 Score=72.91 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=39.8
Q ss_pred ceEEEecceeEeCCc-ccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNS-HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++++++++|++. .++++.++. .++|+|++|||||||++.|..
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 578999999999886 888877665 799999999999999999974
No 480
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=1.6e-06 Score=73.54 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=39.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++++|+++|++..++++.++. +++|+|++|||||||++.|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 58899999999988888887666 799999999999999999984
No 481
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=4.3e-05 Score=65.53 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCceEE--EecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC
Q 024744 8 PPLAVR--IDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE 83 (263)
Q Consensus 8 ~~~~~~--~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~ 83 (263)
....++ ++++++.|.......+ .-+.++++|++|+||||++..|... ..+.+++++..|... .+...+......
T Consensus 50 ~~~vl~~v~~~l~~~~~~~~~~~~-~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~ 127 (270)
T PRK06731 50 TEEVIEYILEDMSSHFNTENVFEK-EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVK 127 (270)
T ss_pred ccHHHHHHhcccEEeeCCcccccC-CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhh
Confidence 334446 7788888865544433 4469999999999999999999654 236788888887432 222212111110
Q ss_pred CCcceeeeeeecCcceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCC
Q 024744 84 GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN 133 (263)
Q Consensus 84 ~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~ 133 (263)
..-+ .+.. +.....+...+..+. ...+.|+|+|++.|...
T Consensus 128 -~~~~-~~~~-------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 128 -TIGF-EVIA-------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNY 167 (270)
T ss_pred -hcCc-eEEe-------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCc
Confidence 0000 1111 112234445555443 23478999999999764
No 482
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.22 E-value=2.8e-06 Score=79.25 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=50.7
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC----------CCCeEEEEecCCC
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK----------HGKRIAVILNEFG 69 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~----------~~~~~~ii~~~~g 69 (263)
.+|++.+++++||++..+++.++. -++++|++|+|||||++.|.+.. ++.+++++.+++.
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 478999999999999999998877 69999999999999999997641 3457788777753
No 483
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.22 E-value=4.7e-06 Score=65.89 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=32.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
++++|+|++|||||||+++|+.. ..|.+++++.++...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 68999999999999999999875 347889999887543
No 484
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.22 E-value=1.7e-06 Score=81.86 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=42.7
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|+++.+++++++. +++|+|++|||||||++.|.+.
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 371 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ 371 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4689999999999998899988776 8999999999999999999864
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1.5e-06 Score=73.12 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=37.6
Q ss_pred EEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|+ +...+++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999996 56688887665 7999999999999999999854
No 486
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.22 E-value=2e-06 Score=77.84 Aligned_cols=46 Identities=35% Similarity=0.511 Sum_probs=42.7
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++++++++|+|++..+++++++. +-++.|-+|||||||++.|..
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G 52 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG 52 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC
Confidence 4789999999999999999998877 789999999999999999984
No 487
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.21 E-value=3.1e-05 Score=66.49 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+..|+|+|.+|||||||+++|+.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999985
No 488
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.21 E-value=1.9e-06 Score=73.55 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=40.9
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.+++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 467999999999987 5678887766 7999999999999999999854
No 489
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=2.1e-06 Score=75.95 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+..++|+++|++++|. ...++++.++. +++|+|++|||||||++.|++.
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5567999999999995 35688887766 7999999999999999999854
No 490
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.21 E-value=6.5e-06 Score=70.78 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=53.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc---ccccchhhhhcCCCCcceeeeeeec-CcceEeecchh
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE---EIGVERAMINEGEGGALVEEWVELA-NGCICCTVKHS 106 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~---t~~~d~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~~~ 106 (263)
++++|+|++|||||||+.+|+.. ..| +++++.++.+. +.+.|.......+.. ..+.++ +...+-.....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~----~v~~~s~~~~~~~~~~~~ 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGAD----VVYGLTDGEWVASGRDRS 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCc----EEEEecCCeEEEEecCCC
Confidence 57999999999999999999875 346 89999998742 112233222222111 112221 22221122233
Q ss_pred HHHHHHHHHHhccCCcEEEEcccCCC
Q 024744 107 LVQALEQLVQRKERLDHILLETTGLA 132 (263)
Q Consensus 107 ~~~~l~~~~~~~~~~d~ilie~~G~~ 132 (263)
+.+.+..+. ..+|+||+|...-.
T Consensus 77 l~~~l~~l~---~~~D~vlVEG~k~~ 99 (274)
T PRK14493 77 LDDALDDLA---PGMDYAVVEGFKDS 99 (274)
T ss_pred HHHHHHhhC---cCCCEEEEECCCCC
Confidence 444444332 36899999887643
No 491
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.3e-06 Score=76.92 Aligned_cols=56 Identities=30% Similarity=0.482 Sum_probs=42.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~ 100 (263)
-++++|.||+|||||||+|+ +++.+.+++.||.|.+.....+..+ ..++|+ ||.+.
T Consensus 134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~Tk~~q~i~~~~~------i~LlDt-PGii~ 189 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGTTKGIQWIKLDDG------IYLLDT-PGIIP 189 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCceecceEEEEcCCC------eEEecC-CCcCC
Confidence 48999999999999999999 8888999999998766543333321 136677 66543
No 492
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=1.8e-06 Score=76.25 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=40.1
Q ss_pred eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++ ..+++++++. +++|+|++|||||||++.|++.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 6899999999987 4688888776 7999999999999999999864
No 493
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.20 E-value=1.6e-06 Score=72.98 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|++++|++ ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 468999999975 4578876655 8999999999999999999854
No 494
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=83.07 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=43.6
Q ss_pred CCCCCceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 5 EEDPPLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+-.+.+++++++++++|++ .++++++++. +++|+|++|||||||++.|++.
T Consensus 6 ~~~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 6 ELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred cCCCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 3456779999999999963 4688888776 8999999999999999999875
No 495
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.20 E-value=3.7e-06 Score=69.58 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
--++++|..|||||||++++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 35789999999999999999975
No 496
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.20 E-value=2.3e-06 Score=71.21 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=38.3
Q ss_pred EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 789999999974 4688887666 8999999999999999999854
No 497
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.19 E-value=1.7e-06 Score=72.79 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=37.4
Q ss_pred EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999974 5678887665 7999999999999999999864
No 498
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1.4e-06 Score=78.94 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=38.3
Q ss_pred ceEEEecceeEeCCcc------------------------cCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSH------------------------ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|++++|+|.||..+ ++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 4799999999998865 45555544 8999999999999999999864
No 499
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.19 E-value=4.8e-06 Score=73.98 Aligned_cols=38 Identities=29% Similarity=0.110 Sum_probs=29.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER 76 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~ 76 (263)
.++|+|+||||||||+|+|+ +.+ +.+.+.+++|+....
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt----~~~-~~v~nypftTi~p~~ 41 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALT----KAG-AEAANYPFCTIEPNV 41 (364)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCC-CeecccccccccceE
Confidence 58999999999999999999 555 466776777665443
No 500
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=1.9e-06 Score=72.33 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=35.4
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|+++|++... +.++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 1 MLKLTDITWLYHHLPM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CeEEEEEEEEECCccc--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999986443 44444 8999999999999999999854
Done!