Query 024744
Match_columns 263
No_of_seqs 222 out of 2163
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 100.0 9.6E-27 3.3E-31 203.3 21.1 215 31-262 3-245 (318)
2 2wsm_A Hydrogenase expression/ 99.7 9.6E-17 3.3E-21 132.1 6.8 171 31-228 29-211 (221)
3 2www_A Methylmalonic aciduria 99.6 1.4E-15 4.9E-20 134.1 11.6 186 30-228 72-276 (349)
4 3iev_A GTP-binding protein ERA 99.6 3.7E-15 1.3E-19 129.2 11.9 169 30-227 8-178 (308)
5 3p32_A Probable GTPase RV1496/ 99.6 1.7E-15 5.8E-20 133.9 8.8 184 31-228 78-281 (355)
6 2hf9_A Probable hydrogenase ni 99.6 2.4E-15 8.3E-20 124.0 7.0 173 31-227 37-220 (226)
7 1wf3_A GTP-binding protein; GT 99.6 9.4E-15 3.2E-19 126.3 11.0 164 30-227 5-169 (301)
8 2qm8_A GTPase/ATPase; G protei 99.5 1.5E-15 5.3E-20 133.2 2.4 207 11-228 29-258 (337)
9 2p67_A LAO/AO transport system 99.5 3.3E-14 1.1E-18 125.0 9.5 204 13-228 32-258 (341)
10 4dhe_A Probable GTP-binding pr 99.5 2.1E-14 7.2E-19 117.9 6.9 184 24-228 21-208 (223)
11 1ega_A Protein (GTP-binding pr 99.5 6.2E-14 2.1E-18 121.2 9.5 162 29-227 5-171 (301)
12 3iby_A Ferrous iron transport 99.5 6.1E-14 2.1E-18 118.5 8.6 158 33-228 2-164 (256)
13 3pqc_A Probable GTP-binding pr 99.5 1.8E-13 6.2E-18 109.5 10.2 171 25-227 16-190 (195)
14 3i8s_A Ferrous iron transport 99.5 6.7E-14 2.3E-18 119.3 7.7 161 32-228 3-166 (274)
15 2qtf_A Protein HFLX, GTP-bindi 99.4 3.1E-13 1.1E-17 119.7 10.2 171 30-227 177-350 (364)
16 1svi_A GTP-binding protein YSX 99.4 1.6E-12 5.4E-17 104.2 12.8 173 22-227 13-191 (195)
17 4dcu_A GTP-binding protein ENG 99.4 8.9E-13 3E-17 120.2 11.7 171 20-228 11-182 (456)
18 2hjg_A GTP-binding protein ENG 99.4 1.8E-12 6.2E-17 117.5 11.7 159 32-228 3-162 (436)
19 2hjg_A GTP-binding protein ENG 99.4 7.2E-13 2.5E-17 120.2 8.2 169 31-227 174-345 (436)
20 1mky_A Probable GTP-binding pr 99.4 3.3E-13 1.1E-17 122.5 5.7 185 31-262 179-370 (439)
21 1pui_A ENGB, probable GTP-bind 99.4 7.4E-13 2.5E-17 107.6 7.1 186 11-228 3-196 (210)
22 1mky_A Probable GTP-binding pr 99.3 5.8E-13 2E-17 120.9 5.9 161 32-227 1-162 (439)
23 4dcu_A GTP-binding protein ENG 99.3 2.4E-13 8.3E-18 124.0 3.4 169 31-227 194-365 (456)
24 3k53_A Ferrous iron transport 99.3 1.8E-12 6.2E-17 110.2 8.5 162 31-228 2-163 (271)
25 3b1v_A Ferrous iron uptake tra 99.3 1.5E-12 5.2E-17 110.8 7.7 156 33-227 4-160 (272)
26 3a1s_A Iron(II) transport prot 99.3 3.7E-12 1.3E-16 107.6 8.8 159 32-227 5-163 (258)
27 3q72_A GTP-binding protein RAD 99.3 7.9E-12 2.7E-16 97.3 8.5 157 34-227 4-160 (166)
28 1yrb_A ATP(GTP)binding protein 99.3 1.7E-11 5.7E-16 103.2 11.0 46 25-70 7-53 (262)
29 1lnz_A SPO0B-associated GTP-bi 99.3 7.8E-13 2.7E-17 116.1 2.0 163 33-227 159-326 (342)
30 3q85_A GTP-binding protein REM 99.3 4E-12 1.4E-16 99.3 5.7 54 157-227 110-163 (169)
31 3tw8_B RAS-related protein RAB 99.3 7E-12 2.4E-16 98.8 6.9 160 31-227 8-167 (181)
32 3gee_A MNME, tRNA modification 99.3 1.4E-12 4.9E-17 119.2 3.2 156 35-229 236-396 (476)
33 2gj8_A MNME, tRNA modification 99.3 3.2E-12 1.1E-16 101.0 4.6 157 34-228 6-163 (172)
34 2g6b_A RAS-related protein RAB 99.2 5.6E-12 1.9E-16 99.5 5.8 158 33-227 11-170 (180)
35 2qu8_A Putative nucleolar GTP- 99.2 2.8E-11 9.7E-16 99.8 10.1 168 31-227 28-201 (228)
36 2nzj_A GTP-binding protein REM 99.2 2.2E-11 7.6E-16 95.5 9.0 161 33-227 5-165 (175)
37 1u8z_A RAS-related protein RAL 99.2 4.5E-12 1.5E-16 98.5 4.8 158 33-227 5-163 (168)
38 2il1_A RAB12; G-protein, GDP, 99.2 1.9E-11 6.4E-16 98.1 8.6 157 34-227 28-186 (192)
39 2aka_B Dynamin-1; fusion prote 99.2 6.6E-12 2.2E-16 107.7 6.1 83 157-262 193-277 (299)
40 2wji_A Ferrous iron transport 99.2 5.8E-12 2E-16 98.6 5.2 159 32-227 3-161 (165)
41 2bov_A RAla, RAS-related prote 99.2 9.9E-12 3.4E-16 100.3 6.5 162 29-227 11-173 (206)
42 2e87_A Hypothetical protein PH 99.2 7.4E-12 2.5E-16 110.6 6.0 163 31-227 166-332 (357)
43 2a9k_A RAS-related protein RAL 99.2 8.3E-12 2.8E-16 98.9 5.6 160 31-227 17-177 (187)
44 1z0f_A RAB14, member RAS oncog 99.2 8.1E-12 2.8E-16 98.3 5.3 158 32-227 15-174 (179)
45 1fzq_A ADP-ribosylation factor 99.2 6.2E-11 2.1E-15 94.2 10.5 158 32-227 16-174 (181)
46 3tkl_A RAS-related protein RAB 99.2 1.5E-11 5.2E-16 98.4 6.8 159 33-227 17-175 (196)
47 1zj6_A ADP-ribosylation factor 99.2 1E-11 3.5E-16 99.0 5.6 160 32-229 16-176 (187)
48 1zd9_A ADP-ribosylation factor 99.2 1E-11 3.5E-16 99.3 5.6 159 33-228 23-182 (188)
49 2erx_A GTP-binding protein DI- 99.2 3.2E-11 1.1E-15 94.1 8.0 55 157-228 110-164 (172)
50 3bc1_A RAS-related protein RAB 99.2 2.2E-11 7.5E-16 97.0 7.1 159 33-227 12-181 (195)
51 4dsu_A GTPase KRAS, isoform 2B 99.2 2.7E-11 9.2E-16 96.2 7.5 157 34-227 6-162 (189)
52 1kao_A RAP2A; GTP-binding prot 99.2 2.4E-11 8.3E-16 94.2 7.0 158 34-227 5-162 (167)
53 1zbd_A Rabphilin-3A; G protein 99.2 3.8E-11 1.3E-15 96.9 8.3 158 33-226 9-166 (203)
54 2wjg_A FEOB, ferrous iron tran 99.2 6.1E-11 2.1E-15 94.3 9.4 162 30-228 5-166 (188)
55 2fg5_A RAB-22B, RAS-related pr 99.2 4.6E-11 1.6E-15 95.8 8.7 160 33-228 24-183 (192)
56 2dyk_A GTP-binding protein; GT 99.2 7E-12 2.4E-16 97.0 3.7 156 33-227 2-158 (161)
57 2f7s_A C25KG, RAS-related prot 99.2 3.3E-11 1.1E-15 98.3 8.0 166 33-227 26-195 (217)
58 2hup_A RAS-related protein RAB 99.2 2.3E-11 7.7E-16 98.5 6.6 158 33-227 30-189 (201)
59 2y8e_A RAB-protein 6, GH09086P 99.2 1.5E-11 5E-16 96.8 5.1 157 33-227 15-173 (179)
60 1r2q_A RAS-related protein RAB 99.2 1E-11 3.4E-16 96.8 4.0 159 33-227 7-165 (170)
61 2oil_A CATX-8, RAS-related pro 99.2 1.8E-11 6E-16 98.1 5.4 159 33-227 26-184 (193)
62 1c1y_A RAS-related protein RAP 99.2 8.8E-11 3E-15 91.2 9.2 158 34-227 5-163 (167)
63 3t1o_A Gliding protein MGLA; G 99.2 4.9E-11 1.7E-15 95.3 7.9 53 157-227 136-188 (198)
64 4bas_A ADP-ribosylation factor 99.2 2.2E-11 7.4E-16 97.8 5.8 162 30-227 15-185 (199)
65 1z2a_A RAS-related protein RAB 99.2 5.8E-12 2E-16 98.1 2.3 155 34-227 7-163 (168)
66 3clv_A RAB5 protein, putative; 99.2 3.1E-11 1.1E-15 96.7 6.6 53 157-227 148-200 (208)
67 2efe_B Small GTP-binding prote 99.2 2.8E-11 9.4E-16 95.6 6.1 158 33-228 13-172 (181)
68 3t5d_A Septin-7; GTP-binding p 99.2 6.1E-11 2.1E-15 100.8 8.1 58 157-229 145-202 (274)
69 3dz8_A RAS-related protein RAB 99.2 2.4E-11 8.4E-16 97.2 5.3 158 34-227 25-182 (191)
70 1z0j_A RAB-22, RAS-related pro 99.2 1.4E-11 4.8E-16 96.1 3.7 159 33-227 7-165 (170)
71 2o52_A RAS-related protein RAB 99.2 3.3E-11 1.1E-15 97.4 5.8 159 33-227 26-184 (200)
72 1f6b_A SAR1; gtpases, N-termin 99.1 8.4E-11 2.9E-15 94.9 8.1 162 33-227 26-195 (198)
73 1r8s_A ADP-ribosylation factor 99.1 1.4E-10 5E-15 89.9 9.1 155 35-227 3-158 (164)
74 3sjy_A Translation initiation 99.1 2.6E-10 9E-15 102.2 12.0 169 33-228 9-189 (403)
75 2h17_A ADP-ribosylation factor 99.1 2E-11 6.9E-16 96.9 4.2 157 33-227 22-179 (181)
76 2yc2_C IFT27, small RAB-relate 99.1 2.9E-11 9.8E-16 97.6 5.2 161 33-227 21-188 (208)
77 3reg_A RHO-like small GTPase; 99.1 1.8E-11 6E-16 98.2 3.8 161 32-228 23-185 (194)
78 1ek0_A Protein (GTP-binding pr 99.1 5.1E-11 1.7E-15 92.7 6.4 160 34-227 5-165 (170)
79 3lvq_E ARF-GAP with SH3 domain 99.1 4.8E-11 1.7E-15 109.8 7.1 156 34-227 324-480 (497)
80 2cxx_A Probable GTP-binding pr 99.1 2E-10 6.8E-15 91.3 9.7 163 34-227 3-180 (190)
81 2a5j_A RAS-related protein RAB 99.1 5.7E-11 1.9E-15 95.1 6.5 159 33-227 22-180 (191)
82 3t5g_A GTP-binding protein RHE 99.1 1.3E-10 4.4E-15 91.8 8.5 160 31-227 5-165 (181)
83 1ksh_A ARF-like protein 2; sma 99.1 1.5E-10 5E-15 92.0 8.7 156 33-227 19-176 (186)
84 1g16_A RAS-related protein SEC 99.1 4.3E-11 1.5E-15 93.2 5.4 155 34-227 5-161 (170)
85 2gf0_A GTP-binding protein DI- 99.1 1.1E-10 3.7E-15 93.6 7.8 54 157-228 115-168 (199)
86 1x3s_A RAS-related protein RAB 99.1 3.3E-11 1.1E-15 96.3 4.6 160 32-227 15-174 (195)
87 1wms_A RAB-9, RAB9, RAS-relate 99.1 3.7E-11 1.3E-15 94.5 4.9 162 32-227 7-170 (177)
88 2b6h_A ADP-ribosylation factor 99.1 1.6E-10 5.3E-15 92.8 8.6 159 31-227 28-187 (192)
89 3kkq_A RAS-related protein M-R 99.1 1.5E-10 5E-15 91.7 8.3 160 31-227 17-178 (183)
90 2fh5_B SR-beta, signal recogni 99.1 1.1E-10 3.9E-15 94.9 7.7 24 32-55 7-30 (214)
91 3cbq_A GTP-binding protein REM 99.1 5.2E-11 1.8E-15 96.0 5.4 163 31-227 22-184 (195)
92 1z06_A RAS-related protein RAB 99.1 4.9E-11 1.7E-15 95.2 5.1 160 31-227 19-184 (189)
93 3oes_A GTPase rhebl1; small GT 99.1 2.2E-10 7.4E-15 92.5 9.0 160 31-227 23-183 (201)
94 2h57_A ADP-ribosylation factor 99.1 4.3E-11 1.5E-15 95.6 4.7 159 32-227 21-183 (190)
95 3geh_A MNME, tRNA modification 99.1 3E-11 1E-15 110.1 4.1 155 34-229 226-382 (462)
96 1ky3_A GTP-binding protein YPT 99.1 3.4E-11 1.2E-15 94.9 3.8 162 32-227 8-174 (182)
97 1moz_A ARL1, ADP-ribosylation 99.1 7.2E-11 2.5E-15 93.4 5.5 158 32-227 18-176 (183)
98 2fn4_A P23, RAS-related protei 99.1 1.1E-10 3.6E-15 91.9 6.4 160 31-227 8-168 (181)
99 2gf9_A RAS-related protein RAB 99.1 6.5E-11 2.2E-15 94.5 5.2 160 32-227 22-181 (189)
100 1z08_A RAS-related protein RAB 99.1 7.4E-11 2.5E-15 92.0 5.4 156 33-227 7-165 (170)
101 1upt_A ARL1, ADP-ribosylation 99.1 3.9E-11 1.3E-15 93.7 3.8 157 33-227 8-165 (171)
102 2xtp_A GTPase IMAP family memb 99.1 4.8E-11 1.6E-15 100.5 4.5 175 31-227 21-204 (260)
103 2ew1_A RAS-related protein RAB 99.1 2.1E-10 7.1E-15 93.0 8.1 157 33-227 27-185 (201)
104 2p5s_A RAS and EF-hand domain 99.1 1.8E-10 6.1E-15 92.8 7.5 160 32-227 28-193 (199)
105 3con_A GTPase NRAS; structural 99.1 2E-10 6.7E-15 91.6 7.5 162 28-227 17-179 (190)
106 2ce2_X GTPase HRAS; signaling 99.1 4.5E-10 1.5E-14 86.7 9.1 156 34-227 5-161 (166)
107 2bme_A RAB4A, RAS-related prot 99.1 1.2E-10 4.1E-15 92.3 5.9 160 32-227 10-169 (186)
108 1m2o_B GTP-binding protein SAR 99.1 1.1E-10 3.9E-15 93.4 5.4 163 34-227 25-188 (190)
109 4djt_A GTP-binding nuclear pro 99.1 2.2E-11 7.5E-16 99.5 1.2 159 34-227 13-171 (218)
110 2hxs_A RAB-26, RAS-related pro 99.1 3.5E-11 1.2E-15 94.7 2.3 161 33-228 7-170 (178)
111 2qnr_A Septin-2, protein NEDD5 99.1 5.4E-10 1.8E-14 96.4 9.8 39 15-54 2-40 (301)
112 3ihw_A Centg3; RAS, centaurin, 99.1 5E-10 1.7E-14 89.3 8.9 158 31-227 19-176 (184)
113 3j2k_7 ERF3, eukaryotic polype 99.1 3.9E-10 1.3E-14 102.2 9.1 24 31-54 16-39 (439)
114 1vg8_A RAS-related protein RAB 99.1 1.4E-10 4.9E-15 93.6 5.6 158 33-226 9-170 (207)
115 2lkc_A Translation initiation 99.1 3.9E-10 1.3E-14 88.6 7.9 159 31-227 7-167 (178)
116 2x2e_A Dynamin-1; nitration, h 99.1 7.1E-11 2.4E-15 104.1 3.9 27 29-55 28-54 (353)
117 4gzl_A RAS-related C3 botulinu 99.0 2.3E-11 8E-16 98.6 0.7 159 34-227 32-201 (204)
118 2g3y_A GTP-binding protein GEM 99.0 1.9E-10 6.5E-15 94.1 6.0 54 157-227 146-199 (211)
119 3cph_A RAS-related protein SEC 99.0 7.5E-11 2.6E-15 95.7 3.6 157 32-227 20-178 (213)
120 3o47_A ADP-ribosylation factor 99.0 2.1E-10 7.1E-15 100.2 6.4 156 34-227 167-323 (329)
121 1xzp_A Probable tRNA modificat 99.0 6.1E-11 2.1E-15 108.5 2.9 153 33-227 244-401 (482)
122 2fu5_C RAS-related protein RAB 99.0 1.1E-10 3.6E-15 92.5 3.9 156 33-227 9-167 (183)
123 2atv_A RERG, RAS-like estrogen 99.0 4E-10 1.4E-14 90.5 7.2 157 33-227 29-187 (196)
124 1wb1_A Translation elongation 99.0 7.5E-10 2.6E-14 101.5 9.9 170 25-227 12-185 (482)
125 2j1l_A RHO-related GTP-binding 99.0 2.2E-10 7.6E-15 93.5 5.5 159 33-227 35-205 (214)
126 3th5_A RAS-related C3 botulinu 98.6 2.8E-11 9.4E-16 97.9 0.0 22 33-54 31-52 (204)
127 2qag_C Septin-7; cell cycle, c 99.0 7.8E-10 2.7E-14 99.4 9.4 47 8-55 8-54 (418)
128 1jwy_B Dynamin A GTPase domain 99.0 4E-10 1.4E-14 97.3 7.2 27 29-55 21-47 (315)
129 2bcg_Y Protein YP2, GTP-bindin 99.0 1.6E-10 5.5E-15 93.4 4.1 156 33-226 9-166 (206)
130 2q3h_A RAS homolog gene family 99.0 3.8E-10 1.3E-14 90.8 5.9 159 33-227 21-191 (201)
131 2iwr_A Centaurin gamma 1; ANK 99.0 6.9E-10 2.4E-14 87.3 7.3 156 33-227 8-165 (178)
132 3gj0_A GTP-binding nuclear pro 99.0 4.2E-11 1.4E-15 98.2 0.1 156 33-227 16-171 (221)
133 3qq5_A Small GTP-binding prote 99.0 8.8E-11 3E-15 105.7 1.9 159 32-228 34-193 (423)
134 3bwd_D RAC-like GTP-binding pr 99.0 1.6E-10 5.4E-15 91.2 3.1 159 34-228 10-178 (182)
135 3cpj_B GTP-binding protein YPT 99.0 2.2E-10 7.5E-15 94.1 4.0 159 33-227 14-172 (223)
136 1nrj_B SR-beta, signal recogni 99.0 8E-10 2.7E-14 90.1 7.3 200 31-262 11-215 (218)
137 2qag_A Septin-2, protein NEDD5 99.0 6.9E-10 2.3E-14 98.1 7.3 47 8-55 14-60 (361)
138 2x77_A ADP-ribosylation factor 99.0 1.8E-09 6.3E-14 85.9 8.7 157 33-227 23-180 (189)
139 4dkx_A RAS-related protein RAB 99.0 1.1E-09 3.7E-14 90.0 7.3 154 35-226 16-171 (216)
140 3r7w_A Gtpase1, GTP-binding pr 99.0 2.2E-10 7.6E-15 99.0 3.1 124 34-171 5-130 (307)
141 1udx_A The GTP-binding protein 99.0 3.9E-10 1.3E-14 101.3 4.7 160 34-227 159-321 (416)
142 3c5c_A RAS-like protein 12; GD 98.9 3.8E-10 1.3E-14 90.1 4.0 160 31-227 20-182 (187)
143 2gco_A H9, RHO-related GTP-bin 98.9 5.6E-10 1.9E-14 90.1 5.0 22 34-55 27-48 (201)
144 1kk1_A EIF2gamma; initiation o 98.9 3.1E-09 1.1E-13 95.4 10.3 59 158-228 139-197 (410)
145 2atx_A Small GTP binding prote 98.9 1.6E-09 5.3E-14 86.6 7.3 160 33-228 19-190 (194)
146 2cjw_A GTP-binding protein GEM 98.9 5.1E-10 1.8E-14 89.9 4.3 22 33-54 7-28 (192)
147 2zej_A Dardarin, leucine-rich 98.9 2.9E-10 1E-14 90.4 2.7 21 34-54 4-24 (184)
148 3q3j_B RHO-related GTP-binding 98.9 6.9E-10 2.4E-14 90.6 4.9 159 34-228 29-200 (214)
149 1s0u_A EIF-2-gamma, translatio 98.9 6E-09 2E-13 93.5 11.4 59 158-228 137-195 (408)
150 2fv8_A H6, RHO-related GTP-bin 98.9 1E-09 3.5E-14 88.9 5.6 23 33-55 26-48 (207)
151 3dpu_A RAB family protein; roc 98.9 1.6E-09 5.4E-14 100.6 7.6 163 31-228 40-205 (535)
152 1xjc_A MOBB protein homolog; s 98.9 3.2E-09 1.1E-13 83.6 8.1 95 31-131 3-107 (169)
153 1mh1_A RAC1; GTP-binding, GTPa 98.9 5E-10 1.7E-14 88.5 3.3 24 32-55 5-28 (186)
154 3lxx_A GTPase IMAP family memb 98.9 7.3E-09 2.5E-13 86.0 10.5 28 28-55 25-52 (239)
155 3l0i_B RAS-related protein RAB 98.9 4.9E-11 1.7E-15 96.1 -2.7 159 33-227 34-192 (199)
156 3lxw_A GTPase IMAP family memb 98.9 2.2E-09 7.4E-14 89.9 6.7 126 33-171 22-154 (247)
157 3zvr_A Dynamin-1; hydrolase, D 98.9 1.1E-09 3.8E-14 104.6 5.4 55 158-227 219-274 (772)
158 3izq_1 HBS1P, elongation facto 98.9 3.7E-10 1.3E-14 106.2 1.7 22 34-55 169-190 (611)
159 2ged_A SR-beta, signal recogni 98.9 7.2E-09 2.5E-13 82.6 8.5 125 31-173 47-173 (193)
160 2ywe_A GTP-binding protein LEP 98.9 6.3E-08 2.2E-12 90.6 15.8 180 31-246 5-198 (600)
161 2j0v_A RAC-like GTP-binding pr 98.9 1.4E-09 4.8E-14 88.2 4.1 161 32-228 9-177 (212)
162 3p26_A Elongation factor 1 alp 98.8 8.5E-10 2.9E-14 101.2 3.1 22 34-55 35-56 (483)
163 2elf_A Protein translation elo 98.8 3.2E-09 1.1E-13 94.1 6.6 153 28-227 17-176 (370)
164 4a9a_A Ribosome-interacting GT 98.8 7.5E-10 2.6E-14 98.0 2.2 126 28-168 68-194 (376)
165 1wxq_A GTP-binding protein; st 98.8 5.4E-10 1.9E-14 99.9 1.1 36 35-75 3-38 (397)
166 4g1u_C Hemin import ATP-bindin 98.8 1.7E-09 6E-14 91.5 4.0 49 7-55 7-60 (266)
167 3t34_A Dynamin-related protein 98.8 3.7E-09 1.3E-13 93.3 5.7 42 14-55 11-57 (360)
168 1m7b_A RND3/RHOE small GTP-bin 98.8 4.5E-09 1.5E-13 83.4 5.6 22 34-55 9-30 (184)
169 1gwn_A RHO-related GTP-binding 98.8 4.5E-09 1.5E-13 85.3 5.7 22 34-55 30-51 (205)
170 3gfo_A Cobalt import ATP-bindi 98.8 2E-09 6.9E-14 91.5 2.8 47 9-55 5-57 (275)
171 2f9l_A RAB11B, member RAS onco 98.8 6.6E-09 2.2E-13 83.6 5.5 54 157-227 111-164 (199)
172 3cb4_D GTP-binding protein LEP 98.8 6.3E-08 2.2E-12 90.7 12.9 181 31-247 3-197 (599)
173 3llu_A RAS-related GTP-binding 98.8 2.1E-09 7E-14 86.4 2.4 22 33-54 21-42 (196)
174 3mca_A HBS1, elongation factor 98.8 5E-09 1.7E-13 98.3 5.1 24 31-54 176-199 (592)
175 1f60_A Elongation factor EEF1A 98.8 3.7E-09 1.3E-13 96.3 4.1 23 32-54 7-29 (458)
176 3izy_P Translation initiation 98.8 7.5E-10 2.6E-14 102.3 -0.5 162 31-228 3-165 (537)
177 2qpt_A EH domain-containing pr 98.8 2.8E-08 9.7E-13 92.4 10.0 26 30-55 63-88 (550)
178 1zun_B Sulfate adenylate trans 98.7 3.1E-09 1.1E-13 96.2 3.2 25 31-55 23-47 (434)
179 1ji0_A ABC transporter; ATP bi 98.7 3.2E-09 1.1E-13 88.5 2.8 47 9-55 4-55 (240)
180 3tr5_A RF-3, peptide chain rel 98.7 1.1E-08 3.8E-13 94.6 6.7 23 31-53 12-34 (528)
181 2pcj_A ABC transporter, lipopr 98.7 3E-09 1E-13 87.7 2.6 46 10-55 3-53 (224)
182 1b0u_A Histidine permease; ABC 98.7 2.7E-09 9.3E-14 90.1 2.4 47 9-55 4-55 (262)
183 1g6h_A High-affinity branched- 98.7 3.1E-09 1E-13 89.6 2.5 47 9-55 5-56 (257)
184 1h65_A Chloroplast outer envel 98.7 3.1E-08 1E-12 83.8 8.7 130 31-172 38-170 (270)
185 2wkq_A NPH1-1, RAS-related C3 98.7 1.9E-09 6.6E-14 93.3 1.0 161 33-228 156-327 (332)
186 2j69_A Bacterial dynamin-like 98.7 1.4E-08 4.8E-13 96.9 6.6 34 33-70 70-103 (695)
187 2ihy_A ABC transporter, ATP-bi 98.7 5E-09 1.7E-13 89.3 2.7 49 7-55 17-70 (279)
188 2j37_W Signal recognition part 98.7 1.1E-07 3.9E-12 87.1 11.1 39 31-69 100-140 (504)
189 2olj_A Amino acid ABC transpor 98.7 6.2E-09 2.1E-13 87.9 2.4 45 11-55 24-73 (263)
190 2zu0_C Probable ATP-dependent 98.7 1.6E-08 5.5E-13 85.6 4.6 46 9-54 18-68 (267)
191 1vpl_A ABC transporter, ATP-bi 98.6 1.6E-08 5.4E-13 85.1 4.5 46 10-55 14-64 (256)
192 3fvq_A Fe(3+) IONS import ATP- 98.6 7.9E-09 2.7E-13 90.8 2.6 46 10-55 3-53 (359)
193 1oix_A RAS-related protein RAB 98.6 1.1E-08 3.8E-13 81.9 2.5 54 157-227 135-188 (191)
194 3def_A T7I23.11 protein; chlor 98.6 1.3E-07 4.5E-12 79.6 8.9 131 30-171 34-166 (262)
195 2d2e_A SUFC protein; ABC-ATPas 98.6 3E-08 1E-12 83.1 4.9 44 11-54 3-51 (250)
196 3c5h_A Glucocorticoid receptor 98.6 4.6E-08 1.6E-12 82.1 5.9 53 157-227 199-251 (255)
197 3tui_C Methionine import ATP-b 98.6 1.3E-08 4.5E-13 89.6 2.3 51 5-55 18-77 (366)
198 2c78_A Elongation factor TU-A; 98.6 1.1E-07 3.9E-12 85.0 8.5 24 31-54 10-33 (405)
199 2ixe_A Antigen peptide transpo 98.6 1.6E-08 5.3E-13 85.9 2.6 47 9-55 14-68 (271)
200 1z47_A CYSA, putative ABC-tran 98.6 1.6E-08 5.5E-13 88.8 2.8 48 8-55 11-64 (355)
201 1mv5_A LMRA, multidrug resista 98.6 1.6E-08 5.6E-13 84.4 2.7 45 11-55 1-51 (243)
202 3dm5_A SRP54, signal recogniti 98.6 2.1E-07 7.2E-12 83.8 9.8 39 32-70 100-140 (443)
203 1jny_A EF-1-alpha, elongation 98.6 3.2E-08 1.1E-12 89.6 4.5 24 31-54 5-28 (435)
204 3rlf_A Maltose/maltodextrin im 98.6 1.6E-08 5.4E-13 89.5 2.4 45 11-55 3-52 (381)
205 2nq2_C Hypothetical ABC transp 98.6 4.3E-08 1.5E-12 82.3 4.8 46 10-55 3-54 (253)
206 1sgw_A Putative ABC transporte 98.6 3.2E-08 1.1E-12 81.0 3.9 46 9-55 8-58 (214)
207 3tif_A Uncharacterized ABC tra 98.6 1.4E-08 4.7E-13 84.4 1.7 45 11-55 1-54 (235)
208 1np6_A Molybdopterin-guanine d 98.6 2E-08 7E-13 79.5 2.6 40 31-70 5-46 (174)
209 1v43_A Sugar-binding transport 98.5 3.1E-08 1E-12 87.6 3.1 45 11-55 11-60 (372)
210 2pze_A Cystic fibrosis transme 98.5 6.7E-08 2.3E-12 79.9 4.9 47 9-55 4-57 (229)
211 2cbz_A Multidrug resistance-as 98.5 5.7E-08 1.9E-12 80.8 4.5 45 11-55 3-54 (237)
212 2yyz_A Sugar ABC transporter, 98.5 2.9E-08 9.9E-13 87.4 2.5 45 11-55 3-52 (359)
213 1g29_1 MALK, maltose transport 98.5 3.3E-08 1.1E-12 87.5 2.8 45 11-55 3-52 (372)
214 2qag_B Septin-6, protein NEDD5 98.5 5.4E-08 1.8E-12 87.3 4.1 46 8-55 13-65 (427)
215 1d2e_A Elongation factor TU (E 98.5 4.4E-07 1.5E-11 81.0 9.9 21 34-54 5-25 (397)
216 2v3c_C SRP54, signal recogniti 98.5 2E-07 6.8E-12 84.1 7.5 38 32-69 99-138 (432)
217 3ec1_A YQEH GTPase; atnos1, at 98.5 3.4E-08 1.2E-12 87.4 2.4 124 34-174 164-292 (369)
218 2it1_A 362AA long hypothetical 98.5 3.5E-08 1.2E-12 87.0 2.4 45 11-55 3-52 (362)
219 2ff7_A Alpha-hemolysin translo 98.5 7.8E-08 2.7E-12 80.4 4.3 45 11-55 7-58 (247)
220 3h2y_A GTPase family protein; 98.5 6.8E-08 2.3E-12 85.5 3.9 133 34-187 162-300 (368)
221 1dar_A EF-G, elongation factor 98.5 2.7E-06 9.3E-11 81.1 15.1 25 30-54 10-34 (691)
222 2yz2_A Putative ABC transporte 98.5 9.5E-08 3.2E-12 80.8 4.5 45 11-55 2-56 (266)
223 1g7s_A Translation initiation 98.5 9.3E-08 3.2E-12 89.6 4.8 25 30-54 3-27 (594)
224 2ghi_A Transport protein; mult 98.5 9.7E-08 3.3E-12 80.5 4.3 47 9-55 15-69 (260)
225 3nh6_A ATP-binding cassette SU 98.5 3.8E-08 1.3E-12 84.9 1.8 47 9-55 51-103 (306)
226 3gd7_A Fusion complex of cysti 98.5 1.4E-07 4.8E-12 83.9 5.5 49 7-55 15-70 (390)
227 1r5b_A Eukaryotic peptide chai 98.5 4E-08 1.4E-12 89.7 2.0 24 31-54 42-65 (467)
228 3d31_A Sulfate/molybdate ABC t 98.4 4.2E-08 1.4E-12 86.0 1.6 44 11-55 1-49 (348)
229 1oxx_K GLCV, glucose, ABC tran 98.4 3.2E-08 1.1E-12 87.0 0.8 45 11-55 3-54 (353)
230 2xex_A Elongation factor G; GT 98.4 2.5E-07 8.6E-12 88.3 7.0 25 30-54 8-32 (693)
231 2onk_A Molybdate/tungstate ABC 98.4 7.1E-08 2.4E-12 80.3 2.0 43 11-55 1-47 (240)
232 1zo1_I IF2, translation initia 98.4 5.5E-08 1.9E-12 89.1 0.3 24 31-54 3-26 (501)
233 3avx_A Elongation factor TS, e 98.3 2E-06 6.8E-11 85.3 11.0 24 31-54 295-318 (1289)
234 2pjz_A Hypothetical protein ST 98.3 2.3E-07 7.7E-12 78.3 3.8 45 11-55 1-53 (263)
235 3kl4_A SRP54, signal recogniti 98.3 4E-06 1.4E-10 75.4 10.3 38 32-69 97-136 (433)
236 3b5x_A Lipid A export ATP-bind 98.3 9.3E-07 3.2E-11 82.8 6.0 47 9-55 339-392 (582)
237 3szr_A Interferon-induced GTP- 98.2 4.7E-07 1.6E-11 85.2 3.8 48 8-55 7-68 (608)
238 2dy1_A Elongation factor G; tr 98.2 7.5E-06 2.6E-10 77.8 11.9 24 31-54 8-31 (665)
239 2h5e_A Peptide chain release f 98.2 3.1E-06 1E-10 78.3 7.5 25 31-55 12-36 (529)
240 3sop_A Neuronal-specific septi 98.1 7.1E-06 2.4E-10 69.3 8.2 22 34-55 4-25 (270)
241 2rdo_7 EF-G, elongation factor 98.1 2.2E-05 7.4E-10 75.1 12.3 24 31-54 9-32 (704)
242 2qi9_C Vitamin B12 import ATP- 98.1 1.6E-06 5.3E-11 72.5 3.9 42 10-55 3-49 (249)
243 3qf4_B Uncharacterized ABC tra 98.1 1.1E-06 3.6E-11 82.7 2.7 47 9-55 352-404 (598)
244 3e70_C DPA, signal recognition 98.1 1.3E-05 4.6E-10 69.5 9.4 38 32-69 129-168 (328)
245 3qf4_A ABC transporter, ATP-bi 98.1 9.2E-07 3.1E-11 82.9 1.7 47 9-55 339-392 (587)
246 3b60_A Lipid A export ATP-bind 98.1 2.4E-06 8.2E-11 80.0 4.6 47 9-55 339-392 (582)
247 3bk7_A ABC transporter ATP-bin 98.0 1.4E-06 4.9E-11 81.8 2.7 49 7-55 79-140 (607)
248 4a82_A Cystic fibrosis transme 98.0 9.9E-07 3.4E-11 82.5 1.3 47 9-55 337-390 (578)
249 2iw3_A Elongation factor 3A; a 98.0 5.5E-06 1.9E-10 81.2 5.9 49 6-54 430-483 (986)
250 2iw3_A Elongation factor 3A; a 98.0 2.6E-06 8.8E-11 83.5 3.5 48 8-55 668-722 (986)
251 3vqt_A RF-3, peptide chain rel 98.0 3.9E-05 1.3E-09 71.2 11.2 24 31-54 30-53 (548)
252 2bbs_A Cystic fibrosis transme 98.0 2.5E-06 8.7E-11 72.9 2.9 59 8-68 37-108 (290)
253 2yl4_A ATP-binding cassette SU 98.0 1.6E-06 5.6E-11 81.3 1.8 44 12-55 342-393 (595)
254 2obl_A ESCN; ATPase, hydrolase 98.0 1.9E-06 6.6E-11 75.5 1.9 51 5-56 39-95 (347)
255 3nwj_A ATSK2; P loop, shikimat 97.9 1.4E-06 4.7E-11 72.9 -0.1 48 7-54 13-70 (250)
256 1htw_A HI0065; nucleotide-bind 97.9 8.7E-07 3E-11 68.9 -1.3 44 12-55 8-56 (158)
257 1puj_A YLQF, conserved hypothe 97.9 6.8E-06 2.3E-10 69.9 3.6 38 33-74 121-158 (282)
258 2v9p_A Replication protein E1; 97.8 6.5E-07 2.2E-11 77.0 -3.4 45 11-56 101-150 (305)
259 1yqt_A RNAse L inhibitor; ATP- 97.8 5.8E-06 2E-10 76.6 2.4 45 11-55 20-70 (538)
260 2dpy_A FLII, flagellum-specifi 97.8 4.2E-06 1.4E-10 75.6 1.2 49 7-56 127-181 (438)
261 3bk7_A ABC transporter ATP-bin 97.7 2.9E-05 9.8E-10 72.9 5.6 47 8-55 354-405 (607)
262 4f4c_A Multidrug resistance pr 97.7 2.2E-05 7.5E-10 80.0 5.0 47 9-55 1074-1128(1321)
263 3j25_A Tetracycline resistance 97.7 4.1E-05 1.4E-09 72.3 6.4 25 205-229 213-237 (638)
264 1yqt_A RNAse L inhibitor; ATP- 97.7 3.2E-05 1.1E-09 71.6 5.5 60 8-68 284-356 (538)
265 3g5u_A MCG1178, multidrug resi 97.7 1.2E-05 4.1E-10 81.7 2.8 46 10-55 386-439 (1284)
266 3j16_B RLI1P; ribosome recycli 97.7 1.8E-05 6E-10 74.3 3.3 49 7-55 65-126 (608)
267 2ehv_A Hypothetical protein PH 97.7 2.6E-05 8.9E-10 64.3 3.8 56 11-67 6-68 (251)
268 3b85_A Phosphate starvation-in 97.7 3.5E-06 1.2E-10 68.5 -1.6 37 18-54 7-44 (208)
269 4f4c_A Multidrug resistance pr 97.6 4.2E-05 1.4E-09 77.9 5.7 47 9-55 413-467 (1321)
270 1f5n_A Interferon-induced guan 97.6 7.2E-05 2.4E-09 69.8 6.7 25 30-54 36-60 (592)
271 3r7w_B Gtpase2, GTP-binding pr 97.6 2.6E-05 8.8E-10 67.6 3.3 20 35-54 2-21 (331)
272 3g5u_A MCG1178, multidrug resi 97.6 2.6E-05 8.9E-10 79.3 3.9 47 9-55 1028-1082(1284)
273 3ozx_A RNAse L inhibitor; ATP 97.6 5.2E-05 1.8E-09 70.2 5.6 48 8-55 266-317 (538)
274 1sq5_A Pantothenate kinase; P- 97.6 5.3E-06 1.8E-10 71.4 -1.0 57 9-67 35-119 (308)
275 2px0_A Flagellar biosynthesis 97.6 0.00022 7.6E-09 60.9 8.6 37 33-69 106-145 (296)
276 3ney_A 55 kDa erythrocyte memb 97.6 3.6E-05 1.2E-09 61.9 3.3 34 23-56 10-43 (197)
277 3cnl_A YLQF, putative uncharac 97.6 3.7E-05 1.3E-09 64.6 3.6 37 33-73 100-136 (262)
278 2xxa_A Signal recognition part 97.6 0.00029 1E-08 63.4 9.4 40 31-70 99-141 (433)
279 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 1E-05 3.5E-10 71.9 -0.1 22 33-54 21-42 (392)
280 2eyu_A Twitching motility prot 97.6 1.2E-05 4E-10 67.7 0.2 41 11-55 5-48 (261)
281 1kgd_A CASK, peripheral plasma 97.5 4.4E-05 1.5E-09 60.2 3.3 24 33-56 6-29 (180)
282 2jeo_A Uridine-cytidine kinase 97.5 4.5E-05 1.6E-09 63.2 3.3 35 20-54 8-47 (245)
283 3c8u_A Fructokinase; YP_612366 97.5 4.3E-05 1.5E-09 61.6 3.0 35 33-67 23-59 (208)
284 1zp6_A Hypothetical protein AT 97.5 9.5E-05 3.3E-09 58.4 4.7 23 33-55 10-32 (191)
285 3tr0_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 60.3 3.3 23 33-55 8-30 (205)
286 1znw_A Guanylate kinase, GMP k 97.5 5.9E-05 2E-09 60.8 3.3 23 34-56 22-44 (207)
287 3ozx_A RNAse L inhibitor; ATP 97.5 3.1E-05 1.1E-09 71.7 1.8 41 15-55 3-48 (538)
288 3a00_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 60.2 2.7 22 34-55 3-24 (186)
289 1ye8_A Protein THEP1, hypothet 97.5 6.6E-05 2.2E-09 59.3 3.3 22 34-55 2-23 (178)
290 1zu4_A FTSY; GTPase, signal re 97.4 0.0003 1E-08 60.8 7.6 38 32-69 105-144 (320)
291 3uie_A Adenylyl-sulfate kinase 97.4 5.3E-05 1.8E-09 60.7 2.6 40 15-54 3-47 (200)
292 1lvg_A Guanylate kinase, GMP k 97.4 5.5E-05 1.9E-09 60.6 2.7 22 34-55 6-27 (198)
293 1p9r_A General secretion pathw 97.4 2.4E-05 8.3E-10 70.1 0.6 57 11-67 143-204 (418)
294 1jal_A YCHF protein; nucleotid 97.4 5.2E-05 1.8E-09 66.6 2.6 37 34-75 4-40 (363)
295 3asz_A Uridine kinase; cytidin 97.4 8.2E-05 2.8E-09 59.9 3.5 35 33-68 7-41 (211)
296 2ohf_A Protein OLA1, GTP-bindi 97.4 5.8E-05 2E-09 67.0 2.7 34 34-72 24-57 (396)
297 1n0u_A EF-2, elongation factor 97.4 0.00011 3.7E-09 71.7 4.8 26 30-55 17-42 (842)
298 1s96_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 60.9 3.3 24 33-56 17-40 (219)
299 4gp7_A Metallophosphoesterase; 97.4 8.7E-05 3E-09 58.0 3.2 20 34-53 11-30 (171)
300 2ffh_A Protein (FFH); SRP54, s 97.4 0.00033 1.1E-08 62.8 7.1 56 15-70 80-138 (425)
301 3kta_A Chromosome segregation 97.3 9.8E-05 3.3E-09 58.0 2.9 22 33-54 27-48 (182)
302 3aez_A Pantothenate kinase; tr 97.3 0.00017 5.7E-09 62.2 4.6 62 8-69 40-131 (312)
303 1z6g_A Guanylate kinase; struc 97.3 9.1E-05 3.1E-09 60.3 2.7 24 34-57 25-48 (218)
304 2f1r_A Molybdopterin-guanine d 97.3 8.2E-05 2.8E-09 58.4 2.3 37 32-68 2-40 (171)
305 1tf7_A KAIC; homohexamer, hexa 97.3 5.5E-05 1.9E-09 69.8 1.4 47 6-52 7-59 (525)
306 2bdt_A BH3686; alpha-beta prot 97.3 0.00012 4.2E-09 57.8 3.3 22 33-54 3-24 (189)
307 3t61_A Gluconokinase; PSI-biol 97.3 9.3E-05 3.2E-09 59.2 2.5 23 32-54 18-40 (202)
308 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 58.8 3.3 24 33-56 9-32 (208)
309 1rj9_A FTSY, signal recognitio 97.3 0.00021 7.1E-09 61.3 4.4 36 33-68 103-140 (304)
310 4a74_A DNA repair and recombin 97.2 7.1E-05 2.4E-09 60.8 1.1 21 34-54 27-47 (231)
311 2o8b_B DNA mismatch repair pro 97.2 0.0002 6.8E-09 71.0 4.5 45 8-52 747-809 (1022)
312 1j8m_F SRP54, signal recogniti 97.2 0.00049 1.7E-08 58.8 6.3 55 15-69 78-137 (297)
313 1tq4_A IIGP1, interferon-induc 97.2 0.00018 6E-09 64.4 3.5 23 33-55 70-92 (413)
314 4eun_A Thermoresistant glucoki 97.2 0.00018 6.3E-09 57.5 3.3 22 33-54 30-51 (200)
315 3tqc_A Pantothenate kinase; bi 97.2 0.00023 7.7E-09 61.5 4.0 35 34-68 94-132 (321)
316 1ex7_A Guanylate kinase; subst 97.2 0.00018 6.2E-09 57.2 3.1 23 35-57 4-26 (186)
317 3b9q_A Chloroplast SRP recepto 97.2 0.00022 7.7E-09 61.1 3.8 36 33-68 101-138 (302)
318 2j41_A Guanylate kinase; GMP, 97.2 0.0002 6.9E-09 57.1 3.3 23 34-56 8-30 (207)
319 1kag_A SKI, shikimate kinase I 97.2 0.00017 5.8E-09 55.9 2.7 22 33-54 5-26 (173)
320 2qt1_A Nicotinamide riboside k 97.2 0.00035 1.2E-08 56.0 4.6 34 33-68 22-55 (207)
321 3lnc_A Guanylate kinase, GMP k 97.2 0.00013 4.6E-09 59.6 2.0 22 34-55 29-51 (231)
322 3q5d_A Atlastin-1; G protein, 97.1 0.00028 9.6E-09 63.6 4.2 26 29-54 64-89 (447)
323 3lw7_A Adenylate kinase relate 97.1 0.00021 7.3E-09 55.1 3.0 20 33-52 2-21 (179)
324 2npi_A Protein CLP1; CLP1-PCF1 97.1 2.3E-05 8E-10 71.1 -2.9 46 9-55 116-161 (460)
325 3kb2_A SPBC2 prophage-derived 97.1 0.00022 7.7E-09 55.0 3.1 22 33-54 2-23 (173)
326 1w1w_A Structural maintenance 97.1 0.00025 8.4E-09 63.8 3.5 44 10-54 5-48 (430)
327 2rcn_A Probable GTPase ENGC; Y 97.1 0.00025 8.4E-09 62.2 3.3 22 34-55 217-238 (358)
328 2bbw_A Adenylate kinase 4, AK4 97.1 0.00026 9E-09 58.5 3.3 22 33-54 28-49 (246)
329 1knq_A Gluconate kinase; ALFA/ 97.1 0.00033 1.1E-08 54.5 3.7 22 33-54 9-30 (175)
330 2yv5_A YJEQ protein; hydrolase 97.1 0.00027 9.1E-09 60.6 3.3 21 34-55 167-187 (302)
331 1qhx_A CPT, protein (chloramph 97.1 0.00027 9.4E-09 55.0 3.1 23 33-55 4-26 (178)
332 2qor_A Guanylate kinase; phosp 97.1 0.00024 8.2E-09 57.0 2.7 24 33-56 13-36 (204)
333 2i3b_A HCR-ntpase, human cance 97.1 0.00025 8.4E-09 56.6 2.7 21 34-54 3-23 (189)
334 4fn5_A EF-G 1, elongation fact 97.0 0.0072 2.5E-07 57.7 13.1 24 31-54 12-35 (709)
335 2og2_A Putative signal recogni 97.0 0.00039 1.3E-08 61.0 3.8 36 33-68 158-195 (359)
336 1rz3_A Hypothetical protein rb 97.0 0.00048 1.6E-08 55.1 4.0 35 33-67 23-59 (201)
337 1jjv_A Dephospho-COA kinase; P 97.0 0.00038 1.3E-08 55.7 3.3 22 33-54 3-24 (206)
338 2yhs_A FTSY, cell division pro 97.0 0.00045 1.5E-08 62.9 3.9 36 33-68 294-331 (503)
339 1ly1_A Polynucleotide kinase; 97.0 0.00042 1.4E-08 53.9 3.3 21 34-54 4-24 (181)
340 1t9h_A YLOQ, probable GTPase E 97.0 0.00014 4.9E-09 62.4 0.6 21 34-54 175-195 (307)
341 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00043 1.5E-08 56.0 3.4 35 34-68 25-61 (235)
342 2cvh_A DNA repair and recombin 97.0 0.00053 1.8E-08 55.1 3.9 34 34-68 22-55 (220)
343 1cr0_A DNA primase/helicase; R 97.0 0.00066 2.3E-08 57.6 4.7 35 34-68 37-74 (296)
344 1u0l_A Probable GTPase ENGC; p 97.0 0.00035 1.2E-08 59.7 2.9 22 34-55 171-192 (301)
345 1ixz_A ATP-dependent metallopr 96.9 6.5E-05 2.2E-09 62.4 -1.9 43 14-56 28-73 (254)
346 2yvu_A Probable adenylyl-sulfa 96.9 0.00065 2.2E-08 53.4 4.0 34 31-64 12-47 (186)
347 1cke_A CK, MSSA, protein (cyti 96.9 0.0005 1.7E-08 55.7 3.3 22 33-54 6-27 (227)
348 1nks_A Adenylate kinase; therm 96.9 0.00053 1.8E-08 53.8 3.3 32 33-64 2-35 (194)
349 2if2_A Dephospho-COA kinase; a 96.9 0.00053 1.8E-08 54.7 3.3 21 34-54 3-23 (204)
350 3jvv_A Twitching mobility prot 96.9 0.0005 1.7E-08 60.3 3.3 22 34-55 125-146 (356)
351 2oap_1 GSPE-2, type II secreti 96.9 0.00091 3.1E-08 61.4 5.1 31 34-64 262-293 (511)
352 1iy2_A ATP-dependent metallopr 96.9 7.9E-05 2.7E-09 62.8 -1.9 42 15-56 53-97 (278)
353 1ukz_A Uridylate kinase; trans 96.9 0.0008 2.7E-08 53.6 4.1 31 25-55 8-38 (203)
354 1vma_A Cell division protein F 96.8 0.00079 2.7E-08 57.7 4.1 38 32-69 104-143 (306)
355 2rhm_A Putative kinase; P-loop 96.8 0.0006 2.1E-08 53.6 3.1 22 33-54 6-27 (193)
356 3j16_B RLI1P; ribosome recycli 96.8 0.00089 3E-08 62.8 4.7 41 15-55 350-401 (608)
357 1in4_A RUVB, holliday junction 96.8 9E-05 3.1E-09 64.3 -2.0 45 11-55 18-74 (334)
358 3vaa_A Shikimate kinase, SK; s 96.8 0.00067 2.3E-08 54.1 3.3 21 34-54 27-47 (199)
359 1kht_A Adenylate kinase; phosp 96.8 0.00059 2E-08 53.5 3.0 22 33-54 4-25 (192)
360 3iij_A Coilin-interacting nucl 96.8 0.00058 2E-08 53.4 2.9 24 31-54 10-33 (180)
361 2gza_A Type IV secretion syste 96.8 0.00081 2.8E-08 59.0 4.1 22 34-55 177-198 (361)
362 1qhl_A Protein (cell division 96.8 4.8E-05 1.6E-09 62.6 -3.6 44 8-54 6-49 (227)
363 2kjq_A DNAA-related protein; s 96.8 0.00082 2.8E-08 51.3 3.5 25 31-55 35-59 (149)
364 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00093 3.2E-08 57.9 4.2 22 34-55 173-194 (330)
365 4e22_A Cytidylate kinase; P-lo 96.8 0.00071 2.4E-08 56.2 3.3 22 33-54 28-49 (252)
366 1gvn_B Zeta; postsegregational 96.8 0.00088 3E-08 56.9 3.8 25 32-56 33-57 (287)
367 3ec2_A DNA replication protein 96.8 0.00063 2.2E-08 53.2 2.7 22 33-54 39-60 (180)
368 3cm0_A Adenylate kinase; ATP-b 96.7 0.00083 2.8E-08 52.6 3.3 21 34-54 6-26 (186)
369 2jaq_A Deoxyguanosine kinase; 96.7 0.00085 2.9E-08 53.2 3.3 22 34-55 2-23 (205)
370 1ls1_A Signal recognition part 96.7 0.00078 2.7E-08 57.5 3.2 56 13-70 78-138 (295)
371 3hr8_A Protein RECA; alpha and 96.7 0.0049 1.7E-07 53.9 8.3 89 34-134 63-153 (356)
372 2ewv_A Twitching motility prot 96.7 0.00078 2.7E-08 59.4 3.2 23 33-55 137-159 (372)
373 2vp4_A Deoxynucleoside kinase; 96.7 0.0013 4.3E-08 53.8 4.3 23 33-55 21-43 (230)
374 2dby_A GTP-binding protein; GD 96.7 0.00073 2.5E-08 59.5 3.0 22 34-55 3-24 (368)
375 1gtv_A TMK, thymidylate kinase 96.7 0.00047 1.6E-08 55.3 1.6 32 34-65 2-35 (214)
376 1y63_A LMAJ004144AAA protein; 96.7 0.0009 3.1E-08 52.7 3.2 22 33-54 11-32 (184)
377 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.8E-08 50.5 3.5 23 31-53 22-44 (149)
378 2plr_A DTMP kinase, probable t 96.7 0.0011 3.7E-08 52.9 3.6 23 33-55 5-27 (213)
379 3trf_A Shikimate kinase, SK; a 96.7 0.00097 3.3E-08 52.2 3.2 23 32-54 5-27 (185)
380 2v54_A DTMP kinase, thymidylat 96.7 0.0017 5.8E-08 51.5 4.6 29 33-61 5-33 (204)
381 1qf9_A UMP/CMP kinase, protein 96.7 0.0013 4.4E-08 51.6 3.9 22 33-54 7-28 (194)
382 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.7E-08 52.1 3.4 22 33-54 4-25 (196)
383 2pez_A Bifunctional 3'-phospho 96.6 0.001 3.5E-08 51.9 3.2 22 33-54 6-27 (179)
384 3euj_A Chromosome partition pr 96.6 0.00054 1.9E-08 62.3 1.6 22 33-54 30-51 (483)
385 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 52.2 3.2 22 34-55 2-23 (197)
386 1e69_A Chromosome segregation 96.6 0.00069 2.4E-08 58.4 2.0 40 12-53 6-45 (322)
387 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.1E-08 55.1 3.3 24 32-55 4-27 (260)
388 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0011 3.7E-08 58.3 3.2 21 33-53 24-44 (365)
389 2wwf_A Thymidilate kinase, put 96.6 0.0012 4.1E-08 52.8 3.1 23 33-55 11-33 (212)
390 2ze6_A Isopentenyl transferase 96.6 0.0013 4.5E-08 54.7 3.4 23 33-55 2-24 (253)
391 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4.3E-08 51.8 3.2 22 34-55 2-23 (195)
392 4eaq_A DTMP kinase, thymidylat 96.5 0.0017 6E-08 53.1 4.1 36 33-69 27-63 (229)
393 4dzz_A Plasmid partitioning pr 96.5 0.05 1.7E-06 42.8 12.6 84 33-133 2-88 (206)
394 1n0w_A DNA repair protein RAD5 96.5 0.0026 8.8E-08 51.8 4.9 35 34-68 26-68 (243)
395 1odf_A YGR205W, hypothetical 3 96.5 0.0014 4.6E-08 55.8 3.3 25 31-55 30-54 (290)
396 2dr3_A UPF0273 protein PH0284; 96.5 0.0019 6.5E-08 52.7 4.1 36 34-69 25-62 (247)
397 2c95_A Adenylate kinase 1; tra 96.5 0.0014 4.9E-08 51.5 3.3 22 33-54 10-31 (196)
398 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.6E-08 52.5 3.1 23 33-55 10-32 (215)
399 1ewq_A DNA mismatch repair pro 96.5 0.0014 4.6E-08 63.1 3.5 43 12-54 551-598 (765)
400 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.9E-08 52.8 3.2 22 33-54 5-26 (218)
401 1lw7_A Transcriptional regulat 96.5 0.0013 4.3E-08 57.8 3.0 23 33-55 171-193 (365)
402 3ux8_A Excinuclease ABC, A sub 96.5 0.0013 4.5E-08 62.4 3.3 30 24-53 335-369 (670)
403 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.1E-08 51.3 3.6 24 32-55 8-31 (203)
404 3ux8_A Excinuclease ABC, A sub 96.5 0.0018 6.3E-08 61.4 4.2 35 15-49 19-61 (670)
405 2bwj_A Adenylate kinase 5; pho 96.5 0.0016 5.6E-08 51.3 3.3 22 33-54 13-34 (199)
406 3fb4_A Adenylate kinase; psych 96.4 0.0016 5.4E-08 52.4 3.2 21 34-54 2-22 (216)
407 3h2y_A GTPase family protein; 96.4 0.0027 9.3E-08 55.8 4.9 59 157-226 97-155 (368)
408 2iyv_A Shikimate kinase, SK; t 96.4 0.0012 4E-08 51.7 2.2 22 33-54 3-24 (184)
409 1via_A Shikimate kinase; struc 96.4 0.0017 5.7E-08 50.5 3.1 22 33-54 5-26 (175)
410 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6.2E-08 49.7 3.2 21 34-54 2-22 (168)
411 2cdn_A Adenylate kinase; phosp 96.4 0.0018 6.1E-08 51.5 3.2 21 34-54 22-42 (201)
412 2vli_A Antibiotic resistance p 96.4 0.0011 3.9E-08 51.6 1.9 23 33-55 6-28 (183)
413 1zd8_A GTP:AMP phosphotransfer 96.4 0.0019 6.4E-08 52.5 3.3 23 33-55 8-30 (227)
414 3end_A Light-independent proto 96.4 0.015 5.3E-07 49.3 9.2 39 31-69 40-80 (307)
415 3exa_A TRNA delta(2)-isopenten 96.4 0.0032 1.1E-07 54.0 4.8 34 31-67 2-35 (322)
416 2x8a_A Nuclear valosin-contain 96.4 0.0017 5.8E-08 54.7 3.0 21 35-55 47-67 (274)
417 1e6c_A Shikimate kinase; phosp 96.4 0.0016 5.3E-08 50.3 2.6 22 33-54 3-24 (173)
418 3dl0_A Adenylate kinase; phosp 96.4 0.0019 6.6E-08 51.9 3.2 21 35-55 3-23 (216)
419 1puj_A YLQF, conserved hypothe 96.3 0.0027 9.1E-08 53.7 4.1 51 157-226 51-101 (282)
420 2grj_A Dephospho-COA kinase; T 96.3 0.0027 9.1E-08 50.6 3.7 25 30-54 10-34 (192)
421 1m7g_A Adenylylsulfate kinase; 96.3 0.0021 7.3E-08 51.6 3.2 23 32-54 25-47 (211)
422 1zuh_A Shikimate kinase; alpha 96.3 0.0023 7.9E-08 49.3 3.2 23 32-54 7-29 (168)
423 1tf7_A KAIC; homohexamer, hexa 96.3 0.0021 7.1E-08 59.2 3.3 56 11-67 257-318 (525)
424 1aky_A Adenylate kinase; ATP:A 96.3 0.0024 8.1E-08 51.6 3.3 22 33-54 5-26 (220)
425 1zak_A Adenylate kinase; ATP:A 96.3 0.0019 6.5E-08 52.2 2.7 22 33-54 6-27 (222)
426 2ygr_A Uvrabc system protein A 96.3 0.0026 9E-08 62.4 4.0 40 9-53 645-689 (993)
427 2o5v_A DNA replication and rep 96.2 0.0036 1.2E-07 54.8 4.5 21 33-53 27-47 (359)
428 2xb4_A Adenylate kinase; ATP-b 96.2 0.0026 8.8E-08 51.7 3.3 21 34-54 2-22 (223)
429 2p5t_B PEZT; postsegregational 96.2 0.0016 5.6E-08 54.0 2.1 23 33-55 33-55 (253)
430 3ec1_A YQEH GTPase; atnos1, at 96.2 0.0047 1.6E-07 54.3 5.2 60 157-227 99-158 (369)
431 2orw_A Thymidine kinase; TMTK, 96.2 0.0036 1.2E-07 49.4 4.0 36 33-68 4-41 (184)
432 3qks_A DNA double-strand break 96.2 0.0028 9.6E-08 50.8 3.4 23 31-53 22-44 (203)
433 1uj2_A Uridine-cytidine kinase 96.2 0.0027 9.2E-08 52.5 3.3 24 31-54 21-44 (252)
434 3ake_A Cytidylate kinase; CMP 96.2 0.0025 8.6E-08 50.6 3.0 22 33-54 3-24 (208)
435 3tlx_A Adenylate kinase 2; str 96.2 0.003 1E-07 52.1 3.3 22 33-54 30-51 (243)
436 3umf_A Adenylate kinase; rossm 96.1 0.0038 1.3E-07 50.7 3.8 24 31-54 28-51 (217)
437 1e4v_A Adenylate kinase; trans 96.1 0.0031 1.1E-07 50.7 3.3 20 35-54 3-22 (214)
438 2r6f_A Excinuclease ABC subuni 96.1 0.0026 8.8E-08 62.3 3.1 39 10-53 628-671 (972)
439 1nlf_A Regulatory protein REPA 96.1 0.0031 1.1E-07 53.0 3.3 21 34-54 32-52 (279)
440 4aby_A DNA repair protein RECN 96.1 0.0011 3.8E-08 58.9 0.3 31 23-53 47-81 (415)
441 1svm_A Large T antigen; AAA+ f 96.1 0.0033 1.1E-07 55.5 3.3 23 34-56 171-193 (377)
442 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 51.5 3.3 22 33-54 10-31 (233)
443 2f6r_A COA synthase, bifunctio 96.1 0.0032 1.1E-07 53.1 3.1 22 32-53 75-96 (281)
444 1ltq_A Polynucleotide kinase; 96.1 0.0034 1.2E-07 53.1 3.3 22 33-54 3-24 (301)
445 2w58_A DNAI, primosome compone 96.0 0.0054 1.9E-07 48.6 4.3 23 33-55 55-77 (202)
446 3d3q_A TRNA delta(2)-isopenten 96.0 0.0059 2E-07 53.0 4.7 32 33-67 8-39 (340)
447 3be4_A Adenylate kinase; malar 96.0 0.0037 1.3E-07 50.4 3.1 22 33-54 6-27 (217)
448 2b8t_A Thymidine kinase; deoxy 96.0 0.0059 2E-07 49.8 4.3 38 33-70 13-52 (223)
449 2vf7_A UVRA2, excinuclease ABC 96.0 0.003 1E-07 61.2 2.9 39 8-51 499-542 (842)
450 3qkt_A DNA double-strand break 96.0 0.0037 1.3E-07 54.2 3.2 23 31-53 22-44 (339)
451 3lv8_A DTMP kinase, thymidylat 96.0 0.0048 1.6E-07 50.8 3.7 38 33-70 28-67 (236)
452 3zvl_A Bifunctional polynucleo 95.9 0.0049 1.7E-07 55.1 3.9 24 31-54 257-280 (416)
453 1pzn_A RAD51, DNA repair and r 95.9 0.0072 2.5E-07 52.7 4.8 22 34-55 133-154 (349)
454 1jbk_A CLPB protein; beta barr 95.9 0.0043 1.5E-07 48.0 3.1 23 33-55 44-66 (195)
455 1xp8_A RECA protein, recombina 95.9 0.023 7.8E-07 49.9 8.0 89 34-134 76-166 (366)
456 3sr0_A Adenylate kinase; phosp 95.9 0.0048 1.6E-07 49.7 3.3 21 34-54 2-22 (206)
457 1ak2_A Adenylate kinase isoenz 95.8 0.005 1.7E-07 50.2 3.3 23 33-55 17-39 (233)
458 3cr8_A Sulfate adenylyltranfer 95.8 0.0034 1.2E-07 58.2 2.4 23 33-55 370-392 (552)
459 3bos_A Putative DNA replicatio 95.8 0.0062 2.1E-07 49.2 3.8 35 32-66 52-88 (242)
460 4edh_A DTMP kinase, thymidylat 95.8 0.011 3.9E-07 47.7 5.2 38 32-70 6-45 (213)
461 4tmk_A Protein (thymidylate ki 95.8 0.007 2.4E-07 49.0 3.9 38 33-70 4-43 (213)
462 3a8t_A Adenylate isopentenyltr 95.8 0.0088 3E-07 51.8 4.7 32 33-67 41-72 (339)
463 1wb9_A DNA mismatch repair pro 95.8 0.0048 1.6E-07 59.6 3.3 32 23-54 594-629 (800)
464 1u94_A RECA protein, recombina 95.8 0.026 8.9E-07 49.3 7.7 89 34-134 65-155 (356)
465 3cio_A ETK, tyrosine-protein k 95.8 0.13 4.5E-06 43.5 12.0 38 31-68 103-143 (299)
466 2yv5_A YJEQ protein; hydrolase 95.7 0.0056 1.9E-07 52.2 3.3 54 157-226 111-164 (302)
467 1q3t_A Cytidylate kinase; nucl 95.7 0.0058 2E-07 49.9 3.3 22 33-54 17-38 (236)
468 2qmh_A HPR kinase/phosphorylas 95.7 0.01 3.4E-07 47.5 4.5 30 34-67 36-65 (205)
469 3thx_A DNA mismatch repair pro 95.7 0.0067 2.3E-07 59.5 4.1 19 34-52 664-682 (934)
470 3foz_A TRNA delta(2)-isopenten 95.7 0.0089 3E-07 51.2 4.3 32 33-67 11-42 (316)
471 1lv7_A FTSH; alpha/beta domain 95.7 0.0059 2E-07 50.4 3.1 22 34-55 47-68 (257)
472 3ld9_A DTMP kinase, thymidylat 95.6 0.0064 2.2E-07 49.6 3.1 40 31-70 20-62 (223)
473 1a7j_A Phosphoribulokinase; tr 95.6 0.0029 9.9E-08 53.7 1.0 35 33-67 6-42 (290)
474 3thx_B DNA mismatch repair pro 95.6 0.0043 1.5E-07 60.7 2.3 30 24-53 660-694 (918)
475 3crm_A TRNA delta(2)-isopenten 95.6 0.01 3.4E-07 51.2 4.2 23 33-55 6-28 (323)
476 3cnl_A YLQF, putative uncharac 95.5 0.0087 3E-07 50.0 3.7 51 157-227 47-97 (262)
477 4ag6_A VIRB4 ATPase, type IV s 95.5 0.011 3.7E-07 52.2 4.5 37 31-67 34-72 (392)
478 2dhr_A FTSH; AAA+ protein, hex 95.5 0.0026 8.8E-08 58.2 0.4 42 15-56 44-88 (499)
479 2zr9_A Protein RECA, recombina 95.5 0.01 3.5E-07 51.7 4.1 36 34-69 63-100 (349)
480 3bh0_A DNAB-like replicative h 95.5 0.014 4.9E-07 50.0 4.9 36 34-69 70-107 (315)
481 1sxj_E Activator 1 40 kDa subu 95.4 0.0059 2E-07 52.8 2.4 24 31-54 35-58 (354)
482 1njg_A DNA polymerase III subu 95.4 0.0087 3E-07 48.0 3.3 23 33-55 46-68 (250)
483 4hlc_A DTMP kinase, thymidylat 95.4 0.011 3.8E-07 47.4 3.9 37 33-70 3-40 (205)
484 2p65_A Hypothetical protein PF 95.4 0.006 2E-07 47.1 2.2 23 33-55 44-66 (187)
485 1fnn_A CDC6P, cell division co 95.4 0.0078 2.7E-07 52.5 3.2 23 33-55 45-67 (389)
486 4a1f_A DNAB helicase, replicat 95.3 0.015 5.3E-07 50.3 4.5 37 34-70 48-86 (338)
487 1u0l_A Probable GTPase ENGC; p 95.3 0.011 3.7E-07 50.4 3.4 53 157-226 116-168 (301)
488 3auy_A DNA double-strand break 95.3 0.0091 3.1E-07 52.4 3.0 23 31-53 24-46 (371)
489 2r6a_A DNAB helicase, replicat 95.3 0.013 4.4E-07 52.9 4.1 36 34-69 205-243 (454)
490 3tqf_A HPR(Ser) kinase; transf 95.3 0.012 4.1E-07 46.0 3.3 31 34-68 18-48 (181)
491 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.6E-07 48.5 3.1 24 33-56 3-26 (241)
492 1tue_A Replication protein E1; 95.2 0.0072 2.5E-07 48.6 2.0 23 34-56 60-82 (212)
493 1t9h_A YLOQ, probable GTPase E 95.2 0.0045 1.5E-07 53.0 0.7 16 157-172 118-133 (307)
494 3lda_A DNA repair protein RAD5 95.2 0.011 3.8E-07 52.5 3.3 35 34-68 180-222 (400)
495 1xx6_A Thymidine kinase; NESG, 95.2 0.017 5.7E-07 45.9 4.0 37 33-69 9-47 (191)
496 1sxj_C Activator 1 40 kDa subu 95.1 0.0086 3E-07 51.7 2.5 25 31-55 45-69 (340)
497 2ga8_A Hypothetical 39.9 kDa p 95.1 0.015 5.1E-07 50.7 3.9 24 31-54 23-46 (359)
498 1p5z_B DCK, deoxycytidine kina 95.1 0.0076 2.6E-07 50.1 1.9 26 31-56 23-48 (263)
499 3bfv_A CAPA1, CAPB2, membrane 95.1 0.16 5.5E-06 42.3 10.1 39 31-69 81-122 (271)
500 3eph_A TRNA isopentenyltransfe 95.0 0.014 4.6E-07 51.8 3.4 32 33-67 3-34 (409)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.95 E-value=9.6e-27 Score=203.31 Aligned_cols=215 Identities=30% Similarity=0.531 Sum_probs=158.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
++|+++|+||+|||||||+|.|++..++.+++|+.|++|+ +.+|...+.... .+++++.+||+||+.+.++...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~~-----~~~~el~~gCicc~~~~~~~~~ 76 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA 76 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCCC-----CCEEEECCCceEEcccHHHHHH
Confidence 5899999999999999999999988789999999999998 888876554321 3578899999999999998888
Q ss_pred HHHHHH--hccC--CcEEEEcccCCCCchhHHHHhhcccccccceeeCeE------------------------EeeEEE
Q 024744 111 LEQLVQ--RKER--LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSI------------------------ITDVVI 162 (263)
Q Consensus 111 l~~~~~--~~~~--~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~------------------------i~~iiv 162 (263)
+..++. .... ++++++|++|+++|.++...++.++.......+..+ .+++++
T Consensus 77 l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 887751 2233 499999999999988754322111111111111111 127889
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEE
Q 024744 163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVR 242 (263)
Q Consensus 163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~ 242 (263)
+||.|++++. +.+.+.++.++|.+.++...++.++.+.++.+..+....... ...+...+++.|++++.
T Consensus 157 l~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~ 225 (318)
T 1nij_A 157 LTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVV-----STKPRFHFIADKQNDIS 225 (318)
T ss_dssp EECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSCCC-----SSCCCSCSTGGGGCSEE
T ss_pred EECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChhhhhc-----ccCcccccccCCCCCeE
Confidence 9999999642 678888888999999999999999988888766543221110 00011112344667899
Q ss_pred EEEEEcCCCCCHHHHHhhhc
Q 024744 243 TLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~l~ 262 (263)
++++++++|+++++|..||+
T Consensus 226 s~~~~~~~~~~~~~l~~~l~ 245 (318)
T 1nij_A 226 SIVVELDYPVDISEVSRVME 245 (318)
T ss_dssp EEEEEESSCBCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999985
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.66 E-value=9.6e-17 Score=132.05 Aligned_cols=171 Identities=16% Similarity=0.262 Sum_probs=106.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
+.+.++++|++|||||||+++|+.. ....+++++.++++. ..|...+...+ ..++.+..||.||.....+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 101 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRFG-----IKAEAISTGKECHLDAHMIYH 101 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTTT-----CEEEECCCTTCSSCCHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhCC-----CcEEEecCCceeecccHHHHH
Confidence 5689999999999999999999865 234689999999985 34444443321 134556677765543332222
Q ss_pred HHHHHHHhccCCcEEEEcccCC-CCchhHH-----HHhhccc-----ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744 110 ALEQLVQRKERLDHILLETTGL-ANPAPLA-----SVLWLDD-----QLESAVRLDSIITDVVILNKVDLVSPERSGDSL 178 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~-~~p~~~~-----~~~~~~~-----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~ 178 (263)
.+. ....+|++++|++|. ..|.... .++..+. ........ ...+.++|+||+|+.+..+ ...
T Consensus 102 ~~~----~~~~~d~iiidt~G~~~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~~~~~--~~~ 174 (221)
T 2wsm_A 102 RLK----KFSDCDLLLIENVGNLICPVDFDLGENYRVVMVSVTEGDDVVEKHPEI-FRVADLIVINKVALAEAVG--ADV 174 (221)
T ss_dssp TGG----GGTTCSEEEEEEEEBSSGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHH-HHTCSEEEEECGGGHHHHT--CCH
T ss_pred HHH----hcCCCCEEEEeCCCCCCCCchhccccCcEEEEEeCCCcchhhhhhhhh-hhcCCEEEEecccCCcchh--hHH
Confidence 222 235789999999994 3332210 0000000 00000000 0134899999999975311 135
Q ss_pred HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.+.+.++.+++.+ +++.+||++|.|++++.+++.+.
T Consensus 175 ~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 175 EKMKADAKLINPRA-------------KIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HHHHHHHHHHCTTS-------------EEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-------------eEEEeecCCCCCHHHHHHHHHHH
Confidence 67777777776544 47889999999999999988754
No 3
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=134.05 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=94.8
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc------C-CCCcceeeeeeecCcceE
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE------G-EGGALVEEWVELANGCIC 100 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~------~-~~~~~~~~~~~l~~g~~~ 100 (263)
...++++|+|+||||||||+|+|+.. ..+.+++|+.+++++ ...+..++.. . ..... .+...+.+|.|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~~~~--~v~~~~~~~~l 148 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRDMNA--YIRPSPTRGTL 148 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTCTTE--EEECC------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCCCCE--EEEecCCcccc
Confidence 34789999999999999999999864 346899999999986 3322222211 0 00111 12344567776
Q ss_pred eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH----H--hhcccc--cc-cceee-CeEEeeEEEEecCCCCC
Q 024744 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS----V--LWLDDQ--LE-SAVRL-DSIITDVVILNKVDLVS 170 (263)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~----~--~~~~~~--l~-~~~~~-~~~i~~iivlNK~Dl~~ 170 (263)
|....+..+.+..+ .....+++++||+|+.++..... . +..+.. .. ..+.. -...++++|+||+|+.+
T Consensus 149 gg~tr~~~~~~~~~--~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 149 GGVTRTTNEAILLC--EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp ---CTTHHHHHHHH--HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGG
T ss_pred ccchHHHHHHHHhh--ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCC
Confidence 64444444555432 23678999999999876543211 0 001110 00 00000 00135899999999975
Q ss_pred CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..........+...++..+|.+. .+..+++.+||++|.|+++|++++.+.
T Consensus 227 ~~~~~~~~~~l~~~l~~~~~~a~--------~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 227 IVPARRIQAEYVSALKLLRKRSQ--------VWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC-------------CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCcccc--------CCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 32110112233333333333210 012357889999999999999988754
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.61 E-value=3.7e-15 Score=129.24 Aligned_cols=169 Identities=21% Similarity=0.302 Sum_probs=99.3
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...+.|+|+|.+|||||||+|+|+ +.+++++++.+++|+........... ... ..++|+ +|..-......+.+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~~~~~~~~-~~~-i~lvDT-PG~~~~~~~~~l~~ 80 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVLGVKNIPN-EAQ-IIFLDT-PGIYEPKKSDVLGH 80 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEEETT-TEE-EEEEEC-CCCCCCCTTCHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEEEEEecCC-CCe-EEEEEC-cCCCccccchhHHH
Confidence 345699999999999999999999 77777788888876654444333321 111 247888 55422111133334
Q ss_pred HHHHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCC-CCCCCcchHHHHHHHHHh
Q 024744 110 ALEQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLV-SPERSGDSLDELEKEIHE 187 (263)
Q Consensus 110 ~l~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~-~~~~~~~~~~~~~~~l~~ 187 (263)
.+....... ..+|.+++-.+............+ ...+.. .. ++.++|+||+|+. +.. .+....+.+..
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~-~~~l~~-~~----~pvilV~NK~Dl~~~~~----~~~~~~~~l~~ 150 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIY-QNFIKP-LN----KPVIVVINKIDKIGPAK----NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHTGG-GC----CCEEEEEECGGGSSSGG----GGHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHH-HHHHHh-cC----CCEEEEEECccCCCCHH----HHHHHHHHHHH
Confidence 443333221 467888773332211111111110 112222 11 4589999999998 443 23444445554
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
... .+.+++++||++|.|+++|.+++..
T Consensus 151 ~~~------------~~~~i~~vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 151 KHP------------ELTEIVPISALKGANLDELVKTILK 178 (308)
T ss_dssp HCT------------TCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred hcc------------CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 432 2336889999999999999988864
No 5
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=1.7e-15 Score=133.92 Aligned_cols=184 Identities=21% Similarity=0.209 Sum_probs=104.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc--------CCCCcceeeeeeecCcceE
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCIC 100 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~--------~~~~~~~~~~~~l~~g~~~ 100 (263)
+.++++|+|++|+|||||+++|+.. ..|.+++++..|++.+. .....+.. ...+. .+...+++|.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~-~~g~~l~d~~~~~~~~~~~~~---~i~~~~~~~~~ 153 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR-TGGSILGDKTRMARLAVHPNA---YIRPSPTSGTL 153 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTTE---EEECCC--CCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc-ccchhccchhhHHhhccCCCe---eEEECCCCccc
Confidence 4578999999999999999999764 45899999999987632 11111100 01111 23455566655
Q ss_pred eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH----H--hhccc----ccccceeeCeEEeeEEEEecCCCCC
Q 024744 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS----V--LWLDD----QLESAVRLDSIITDVVILNKVDLVS 170 (263)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~----~--~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~ 170 (263)
+.......+.+. .+. ....+++|++|.|+..+..... . +.++. .+......-..+++++|+||+|+.+
T Consensus 154 ~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 154 GGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEH 231 (355)
T ss_dssp HHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGG
T ss_pred cchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcC
Confidence 555555555553 332 3678999999999877654321 0 00111 0111000001136899999999976
Q ss_pred CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
........+.+.+.+...+|.. ..+..+++++||++|+|+++|++++...
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYPRE--------ALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC--------CSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccccc--------cCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4321122334455554444321 0012368899999999999999988754
No 6
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=2.4e-15 Score=124.03 Aligned_cols=173 Identities=22% Similarity=0.306 Sum_probs=104.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..+.++|+|++|||||||+++++.. ....+++++..+++. ..|...+...+ ...+.+.+||.|+....+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 109 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKHG-----AKVVPLNTGKECHLDAHLVGH 109 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTTT-----CEEEEEECTTCSSCCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhcC-----CcEEEecCCceEeccHHHHHH
Confidence 5678999999999999999999865 334678999999875 34444443321 134556567775543333323
Q ss_pred HHHHHHHhccCCcEEEEcccCC-CCchhHHHHhhcccccccceeeCe---------EEeeEEEEecCCCCCCCCCcchHH
Q 024744 110 ALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDS---------IITDVVILNKVDLVSPERSGDSLD 179 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~-~~p~~~~~~~~~~~~l~~~~~~~~---------~i~~iivlNK~Dl~~~~~~~~~~~ 179 (263)
.+..+ ....+|+++++++|. ..+..+.........+........ ..++++|+||+|+.+..+ ...+
T Consensus 110 ~~~~l--~~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~ 185 (226)
T 2hf9_A 110 ALEDL--NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVG--ADIK 185 (226)
T ss_dssp HHTTS--CGGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHT--CCHH
T ss_pred HHHHH--hcCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhH--HHHH
Confidence 33222 124679999999994 333221100000000000000000 022599999999875321 1356
Q ss_pred HHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 180 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 180 ~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.+.++.+++.+ +++.+||++|.|++++.+++..
T Consensus 186 ~~~~~~~~~~~~~-------------~~~~~Sa~~g~gv~~l~~~l~~ 220 (226)
T 2hf9_A 186 KMENDAKRINPDA-------------EVVLLSLKTMEGFDKVLEFIEK 220 (226)
T ss_dssp HHHHHHHHHCTTS-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-------------eEEEEEecCCCCHHHHHHHHHH
Confidence 6777777666544 4788999999999999988754
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.57 E-value=9.4e-15 Score=126.30 Aligned_cols=164 Identities=23% Similarity=0.245 Sum_probs=98.0
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
.+.+.++|+|.||||||||+|+|+ +.+++++++.+++|+.......... ... ..++|+ +|. ......+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr~~i~~i~~~~--~~~-l~l~DT-pG~--~~~~~~l~~ 74 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRKRLRGILTEG--RRQ-IVFVDT-PGL--HKPMDALGE 74 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEEET--TEE-EEEEEC-CCC--CCCCSHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCceeEEEEEEEEeC--CcE-EEEecC-ccc--cchhhHHHH
Confidence 456789999999999999999999 7777777777877654333333221 111 247888 553 223333444
Q ss_pred HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
.+...... ...+|.+++-.+........... +...+.... .-.|.++|+||+|+.+.. ..+.+.++.+
T Consensus 75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~--i~~~l~~~~---~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~ 143 (301)
T 1wf3_A 75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDEL--VARALKPLV---GKVPILLVGNKLDAAKYP------EEAMKAYHEL 143 (301)
T ss_dssp HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH--HHHHHGGGT---TTSCEEEEEECGGGCSSH------HHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCCChHHHH--HHHHHHhhc---CCCCEEEEEECcccCCch------HHHHHHHHHh
Confidence 44433322 25788888844432222211111 111122110 014589999999998653 1133444443
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ++.+++++||++|.|++++.+++..
T Consensus 144 ~-------------~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 144 L-------------PEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp S-------------TTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred c-------------CcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 1 3446889999999999999998875
No 8
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=1.5e-15 Score=133.23 Aligned_cols=207 Identities=18% Similarity=0.207 Sum_probs=111.9
Q ss_pred eEEEecceeEeCCcccCCCcc-----eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-
Q 024744 11 AVRIDETTHEFSNSHENDDVS-----VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG- 82 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~- 82 (263)
++++++++++|+...++++.+ -.+++|+|+||||||||+|.|+.. ..+.+++++..+++++. .+..+....
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~-~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR-TGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS-SCCCSSCCGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccc-cccchHHHhh
Confidence 356788899998766665543 348999999999999999999864 33788999999886522 110000000
Q ss_pred CCCccee---eeeeecCcceEeecchhHHHHHHHHH-HhccCCcEEEEcccCCCCchhHHH-H----h-hccc----ccc
Q 024744 83 EGGALVE---EWVELANGCICCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLAS-V----L-WLDD----QLE 148 (263)
Q Consensus 83 ~~~~~~~---~~~~l~~g~~~~~~~~~~~~~l~~~~-~~~~~~d~ilie~~G~~~p~~~~~-~----~-~~~~----~l~ 148 (263)
.-+.... -++...+. ||.+.+......+... ......+++++||+|+.++..... . + ..+. .+.
T Consensus 108 ~i~~v~q~~~~~~~~~~~--~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPS--SGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GSTTGGGCTTEEEECCCC--CSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hheeeccCcccccccCcc--cccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 0000000 01110111 2444443333333331 123689999999999988754221 0 0 0110 000
Q ss_pred cceeeCeEEeeEEEEecCCCCCCCC-CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 149 SAVRLDSIITDVVILNKVDLVSPER-SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 149 ~~~~~~~~i~~iivlNK~Dl~~~~~-~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
........+++++++||+|+.+... .....+++...+..++|.. ..+..+++.+||.+|.|+++|++.+.+
T Consensus 186 ~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~--------~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 186 GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPS--------ATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp -CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSB--------TTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccc--------cCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 0000000134788999999865321 0001223333332233311 001235778999999999999998876
Q ss_pred h
Q 024744 228 H 228 (263)
Q Consensus 228 ~ 228 (263)
.
T Consensus 258 ~ 258 (337)
T 2qm8_A 258 H 258 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=3.3e-14 Score=124.96 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=109.3
Q ss_pred EEecceeEeCCcccCC-----CcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCC
Q 024744 13 RIDETTHEFSNSHEND-----DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGG 85 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~-----~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~ 85 (263)
+.+++.++|+...++. ..+.++++++|++|||||||+|.|+.. ..+.+++++..+++++. .+..++...
T Consensus 32 e~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~-~~~~il~d~--- 107 (341)
T 2p67_A 32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV-TGGSILGDK--- 107 (341)
T ss_dssp HCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------
T ss_pred hcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC-CCcceeccc---
Confidence 3345555665544432 234568999999999999999999754 34789999999998632 222222111
Q ss_pred cceeeeeeecCcceEeecchh-----HHHHHHHHHH-hccCCcEEEEcccCCCCchhHHHH------hhccc----cccc
Q 024744 86 ALVEEWVELANGCICCTVKHS-----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASV------LWLDD----QLES 149 (263)
Q Consensus 86 ~~~~~~~~l~~g~~~~~~~~~-----~~~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~------~~~~~----~l~~ 149 (263)
.....+...+++++||..... ....+..+.. .....+++|++|.|+.++...... +..+. .+..
T Consensus 108 ~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~ 187 (341)
T 2p67_A 108 TRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQG 187 (341)
T ss_dssp ---CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CC
T ss_pred chHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHH
Confidence 001112223466776644221 1122222221 135789999999999887653210 00111 0000
Q ss_pred ceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 150 AVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 150 ~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.......++.++|+||+|+.+.......++.+++.++..++.. ..+..+++++||++|.|+++|.+++...
T Consensus 188 l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 188 IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKY--------DEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSB--------TTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccc--------cCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 0000001358999999999764211111223444443333310 0012357899999999999999988764
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.50 E-value=2.1e-14 Score=117.93 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=98.3
Q ss_pred cccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (263)
Q Consensus 24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 103 (263)
.........+.|+|+|.+|||||||+|+|+... +++.+...+|+|.......+... .+.. ..++|+ +|......
T Consensus 21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~~~~~~~~-~~~~-~~l~Dt-pG~~~~~~ 94 (223)
T 4dhe_A 21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHINYFSVGPA-AEPV-AHLVDL-PGYGYAEV 94 (223)
T ss_dssp GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEEEEEESCT-TSCS-EEEEEC-CCCCSSCC
T ss_pred hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceEEEEecCC-CCCc-EEEEcC-CCCCcccC
Confidence 344444556789999999999999999999431 13344455565444322222211 1111 247888 55321111
Q ss_pred ----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHH
Q 024744 104 ----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLD 179 (263)
Q Consensus 104 ----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~ 179 (263)
...+...+...+.....+|.+++-.+........ ...+ ...+.. .. ++.++|+||+|+.+..+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~-~~~l~~-~~----~p~i~v~nK~Dl~~~~~~~~~~~ 167 (223)
T 4dhe_A 95 PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRM-IEWFAP-TG----KPIHSLLTKCDKLTRQESINALR 167 (223)
T ss_dssp CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHH-HHHHGG-GC----CCEEEEEECGGGSCHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHH-HHHHHh-cC----CCEEEEEeccccCChhhHHHHHH
Confidence 2333445555554445577777733332111111 1111 111211 11 45899999999987642212233
Q ss_pred HHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 180 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 180 ~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+.+.+....+. +.....+++++||++|.|++++.+++...
T Consensus 168 ~~~~~l~~~~~~--------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 168 ATQKSLDAYRDA--------GYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp HHHHHHHHHHHH--------TCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc--------ccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 444444443100 00022357889999999999999988754
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=6.2e-14 Score=121.17 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=93.1
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
..+.+.++|+|+||||||||+|+|+ +.++++++..+++|+......+... ... ..++|+ +|.. ....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr~~~~gi~~~~--~~~-i~~iDT-pG~~-----~~~~ 71 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTRHRIVGIHTEG--AYQ-AIYVDT-PGLH-----MEEK 71 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCSSCEEEEEEET--TEE-EEEESS-SSCC-----HHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcceeeEEEEEEEC--Cee-EEEEEC-cCCC-----ccch
Confidence 3566789999999999999999999 7788888887877654333333322 111 246777 4531 0111
Q ss_pred HHHHHHHH----h-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744 109 QALEQLVQ----R-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK 183 (263)
Q Consensus 109 ~~l~~~~~----~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~ 183 (263)
..+.+... . ...+|.+++-.+... .......+ ...+.. ...|.++++||+|+.+.. +.+.+
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i--~~~l~~-----~~~P~ilvlNK~D~~~~~------~~~~~ 137 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMV--LNKLRE-----GKAPVILAVNKVDNVQEK------ADLLP 137 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHH--HHHHHS-----SSSCEEEEEESTTTCCCH------HHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHH--HHHHHh-----cCCCEEEEEECcccCccH------HHHHH
Confidence 22222211 1 135677766333221 22221111 111111 114589999999998631 23334
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+... .++..++++||.+|.|++++.+.+..
T Consensus 138 ~l~~l~~~----------~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 138 HLQFLASQ----------MNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHTT----------SCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred HHHHHHHh----------cCcCceEEEECCCCCCHHHHHHHHHH
Confidence 44433221 12346789999999999999988874
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.48 E-value=6.1e-14 Score=118.45 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=95.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecch-----hH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH-----SL 107 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-----~~ 107 (263)
|.++++|.+|+|||||+|+|+ |.+ ..+.+.+|.|.......+...+ . -..++|+ +|.. .... ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~----g~~-~~v~~~pg~Tv~~~~~~~~~~~--~-~~~lvDt-pG~~--~~~~~~~~~~~ 70 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT----NAN-QRVGNWPGVTVEKKTGEFLLGE--H-LIEITDL-PGVY--SLVANAEGISQ 70 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH----TTS-EEEEECTTSSSEEEEEEEEETT--E-EEEEEEC-CCCS--SCC------CH
T ss_pred CEEEEECCCCCCHHHHHHHHH----CCC-CCccCCCCceEEEEEEEEEECC--e-EEEEEeC-CCcc--cccccccCCCH
Confidence 578999999999999999999 444 4567777876554433333222 1 1257888 5542 1111 22
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.+.+.+.......+|.+++ +.|.........+..++... . +|.++|+||+|+.+........+.+.+.+.
T Consensus 71 ~e~i~~~~~~~~~~d~vi~----VvDas~~~~~~~l~~~l~~~-~----~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg- 140 (256)
T 3iby_A 71 DEQIAAQSVIDLEYDCIIN----VIDACHLERHLYLTSQLFEL-G----KPVVVALNMMDIAEHRGISIDTEKLESLLG- 140 (256)
T ss_dssp HHHHHHHHHHHSCCSEEEE----EEEGGGHHHHHHHHHHHTTS-C----SCEEEEEECHHHHHHTTCEECHHHHHHHHC-
T ss_pred HHHHHHHHHhhCCCCEEEE----EeeCCCchhHHHHHHHHHHc-C----CCEEEEEEChhcCCcCCcHHHHHHHHHHcC-
Confidence 3333332222357899888 55544432222222222221 2 459999999998765433334444444331
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. +++++||++|.|++++.+++.+.
T Consensus 141 ----~-------------~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ----C-------------SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ----S-------------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred ----C-------------CEEEEECCCCCCHHHHHHHHHhh
Confidence 1 47889999999999999988764
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.47 E-value=1.8e-13 Score=109.49 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=91.4
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV- 103 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~- 103 (263)
...+....+-++++|.+|||||||+|+++. .+.....+.+|++......... .. ..++|+ +|......
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~t~~~~~~~~~----~~--~~i~Dt-~G~~~~~~~ 84 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFN----RKIAFVSKTPGKTRSINFYLVN----SK--YYFVDL-PGYGYAKVS 84 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHT----SCCSCCCSSCCCCCCEEEEEET----TT--EEEEEC-CCBSSSCCC
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHc----CccccccCCCCCccCeEEEEEC----Cc--EEEEEC-CCCccccCC
Confidence 334444566889999999999999999994 3333334444543332211111 11 136777 44211111
Q ss_pred ---chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744 104 ---KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE 180 (263)
Q Consensus 104 ---~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~ 180 (263)
...+.............+|.+++-.+........... +...+... . ++.++|+||+|+.++.+ ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~-~----~p~i~v~nK~Dl~~~~~----~~~ 153 (195)
T 3pqc_A 85 KKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL-N----IPFTIVLTKMDKVKMSE----RAK 153 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT-T----CCEEEEEECGGGSCGGG----HHH
T ss_pred hhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc-C----CCEEEEEEChhcCChHH----HHH
Confidence 1223334444444334567777744432211111110 01111111 1 45899999999987653 333
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.++...... ...+++.+||++|.|++++.+++.+
T Consensus 154 ~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 154 KLEEHRKVFSKY----------GEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp HHHHHHHHHHSS----------CCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhc----------CCCceEEEecCCCCCHHHHHHHHHH
Confidence 334443332211 1125788999999999999988764
No 14
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.47 E-value=6.7e-14 Score=119.35 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=94.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-c--chhHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-V--KHSLV 108 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~--~~~~~ 108 (263)
...|+++|.+|||||||+|+|+ +.+ ..+.+.+|.|.......+...+ .. ..++|+ +|..-.. . ...+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~----g~~-~~v~~~~g~t~~~~~~~~~~~~--~~-~~liDt-pG~~~~~~~~~~~~~~ 73 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT----GSR-QRVGNWAGVTVERKEGQFSTTD--HQ-VTLVDL-PGTYSLTTISSQTSLD 73 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH----TTC-EEEEECTTSSSEEEEEEEECSS--CE-EEEEEC-CCCSCSCC----CCHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh----CCC-cccCCCCCeeEEEEEEEEEeCC--Cc-eEEEEC-cCCCccccccccCCHH
Confidence 3578999999999999999999 554 4677888876544333333221 11 246888 4431111 0 02233
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
+.+.+.......+|.+++ +.|.........+...+... . +|.++|+||+|+.+........+.+.+.+.
T Consensus 74 e~i~~~~~~~~~~d~ii~----VvD~~~~~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-- 142 (274)
T 3i8s_A 74 EQIACHYILSGDADLLIN----VVDASNLERNLYLTLQLLEL-G----IPCIVALNMLDIAEKQNIRIEIDALSARLG-- 142 (274)
T ss_dssp HHHHHHHHHHTCCSEEEE----EEEGGGHHHHHHHHHHHHHH-T----CCEEEEEECHHHHHHTTEEECHHHHHHHHT--
T ss_pred HHHHHHHHhhcCCCEEEE----EecCCChHHHHHHHHHHHhc-C----CCEEEEEECccchhhhhHHHHHHHHHHhcC--
Confidence 333333222357899888 55544432222111222221 2 458999999998765433233444444331
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. +++++||++|.|+++|.+++...
T Consensus 143 ---~-------------~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 143 ---C-------------PVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp ---S-------------CEEECCCGGGHHHHHHHHHHHTC
T ss_pred ---C-------------CEEEEEcCCCCCHHHHHHHHHHH
Confidence 1 47889999999999999988753
No 15
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.44 E-value=3.1e-13 Score=119.66 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=86.5
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..++.++|+|++|||||||+|+|+ +... .+.+.+++|++.....+...+ .. ..++++ +|.+ .....++.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~----~~~~-~~~~~~~~T~d~~~~~i~~~g--~~-v~l~DT-~G~i-~~lp~~lve 246 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLT----GLTQ-KVDTKLFTTMSPKRYAIPINN--RK-IMLVDT-VGFI-RGIPPQIVD 246 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHH----CC------------CCSCEEEEEETT--EE-EEEEEC-CCBC-SSCCGGGHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH----CCCc-cccCCcccccCCEEEEEEECC--EE-EEEEeC-CCch-hcCCHHHHH
Confidence 356789999999999999999999 4433 445555655544333333322 11 145666 4432 222344445
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCch--hHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~--~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.+...+.....+|.+++-.+ ..++. ...........+... ... -++.++|.||+|+.+... ....+.+.+..+.
T Consensus 247 ~f~~tl~~~~~aD~il~VvD-~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVID-STFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKINGDL-YKKLDLVEKLSKE 322 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEEE-TTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCCSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEE-CCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCCchH-HHHHHHHHHHHHH
Confidence 55555544467888877333 33333 111110001111110 111 145899999999987531 0011112222233
Q ss_pred h-cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 I-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~-~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ .+. .+++++||++|.|+++|.+++.+
T Consensus 323 l~~~~-------------~~~~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 323 LYSPI-------------FDVIPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HCSCE-------------EEEEECBTTTTBSHHHHHHHHHH
T ss_pred hcCCC-------------CcEEEEECCCCcCHHHHHHHHHH
Confidence 3 211 13578999999999999988764
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.43 E-value=1.6e-12 Score=104.23 Aligned_cols=173 Identities=16% Similarity=0.229 Sum_probs=87.8
Q ss_pred CCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE
Q 024744 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (263)
Q Consensus 22 ~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~ 100 (263)
.+...++....+-++++|.+|||||||+|+|+. .+ .......+|.|.......+. . . ..++|+ +|...
T Consensus 13 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~~~~--~--~--~~l~Dt-~G~~~ 81 (195)
T 1svi_A 13 VKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN----RKNLARTSSKPGKTQTLNFYIIN--D--E--LHFVDV-PGYGF 81 (195)
T ss_dssp SSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHT----C-------------CCEEEEEET--T--T--EEEEEC-CCBCC
T ss_pred CChhhCCCCCCCEEEEECCCCCCHHHHHHHHhC----CCCccccCCCCCceeeEEEEEEC--C--c--EEEEEC-CCCCc
Confidence 444555555677899999999999999999994 33 33444555544433222111 1 1 246777 44211
Q ss_pred eec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744 101 CTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD 176 (263)
Q Consensus 101 ~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~ 176 (263)
... ...+.............+|.+++-.+. .++....+.. +...+.. .. ++.++|+||+|+.+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~-~~~~~~~-~~----~p~i~v~nK~Dl~~~~~--- 151 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDL-RHAPSNDDVQ-MYEFLKY-YG----IPVIVIATKADKIPKGK--- 151 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET-TSCCCHHHHH-HHHHHHH-TT----CCEEEEEECGGGSCGGG---
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEEC-CCCCCHHHHH-HHHHHHH-cC----CCEEEEEECcccCChHH---
Confidence 111 122333344444333345777763332 2221111110 0011111 11 44899999999987652
Q ss_pred hHHHHHHHHHh-hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 177 SLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 177 ~~~~~~~~l~~-~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.....+.+++ +... ....++.+||++|.|++++.+++..
T Consensus 152 -~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 152 -WDKHAKVVRQTLNID-----------PEDELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp -HHHHHHHHHHHHTCC-----------TTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccc-----------CCCceEEEEccCCCCHHHHHHHHHH
Confidence 3333333333 2210 1235788999999999999988754
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.42 E-value=8.9e-13 Score=120.22 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=80.9
Q ss_pred EeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce
Q 024744 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (263)
Q Consensus 20 ~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~ 99 (263)
+-|..+....++.|.|+|+|.+|+|||||+|+|+ +.+.+++.+.+|.|+......+...+ .. ..++|+ +|..
T Consensus 11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~t~~~~~~~~~~~~--~~-~~liDT-~G~~ 82 (456)
T 4dcu_A 11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRDRIYSSAEWLN--YD-FNLIDT-GGID 82 (456)
T ss_dssp ------------CCEEEEECSSSSSHHHHHHHHE----EEEEC-----------CEEEECTTCS--SC-CEEECC-CC--
T ss_pred cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcceeEEEEEEEECC--ce-EEEEEC-CCCC
Confidence 3344555566788999999999999999999999 77778888888876554333333322 21 257787 4432
Q ss_pred EeecchhHHHHHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744 100 CCTVKHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSL 178 (263)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~ 178 (263)
.....+.+.+...... ...+|.+++..++.......... +...+.. .. ++.++|+||+|+.+...
T Consensus 83 --~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~--l~~~l~~-~~----~pvilV~NK~D~~~~~~----- 148 (456)
T 4dcu_A 83 --IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE--VAKILYR-TK----KPVVLAVNKLDNTEMRA----- 148 (456)
T ss_dssp ------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHH--HHHHHTT-CC----SCEEEEEECC------------
T ss_pred --CcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHH--HHHHHHH-cC----CCEEEEEECccchhhhh-----
Confidence 1111122333333221 14678888865543322221111 1112222 11 45899999999875421
Q ss_pred HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.. ..+...++.+.+++||.+|.|+++|.+.+...
T Consensus 149 -~~---------------~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 149 -NI---------------YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH 182 (456)
T ss_dssp ------------------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred -hH---------------HHHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence 00 01122244567899999999999999887653
No 18
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.39 E-value=1.8e-12 Score=117.50 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=80.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.+.|+|+|.||+|||||+|+|+ +.+.+++.+.+|.|++.....+...+ .. ..++|+ +|.... ...+.+.+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~T~d~~~~~~~~~~--~~-~~l~DT-~G~~~~--~~~~~~~~ 72 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRDRIYSSAEWLN--YD-FNLIDT-GGIDIG--DEPFLAQI 72 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHE----EEECC-----------CEEEECTTCS--SC-CEEEC------------CHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCCccceEEEEEEECC--ce-EEEEEC-CCCCCc--chhHHHHH
Confidence 4789999999999999999999 66777788888876654433333322 11 246777 443211 11133333
Q ss_pred HHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
...... ...+|.+++-.++......... .+...+.. .. ++.++|+||+|+.+.... .
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l~~-~~----~pvilv~NK~D~~~~~~~-------------~-- 130 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKILYR-TK----KPVVLAVNKLDNTEMRAN-------------I-- 130 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHTT-CC----SCEEEEEECCCC-----C-------------C--
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHH-cC----CCEEEEEECccCccchhh-------------H--
Confidence 333221 1467888875544322221111 11111211 11 458999999998754210 0
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+...++.+++++||.+|.|+++|.+++...
T Consensus 131 ------~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 131 ------YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH 162 (436)
T ss_dssp ------CSSGGGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred ------HHHHHcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence 01112344568899999999999999888654
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.37 E-value=7.2e-13 Score=120.17 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=84.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-c--hhH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-K--HSL 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~--~~~ 107 (263)
...-++++|.+|+|||||+|+|+ +.....+.+.+|+|++.....+... +.. ..++|+ +|..-... . -+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~----~~~~~~~~~~~gtT~d~~~~~~~~~--~~~-~~l~DT-~G~~~~~~~~~~~e~ 245 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFTYN--QQE-FVIVDT-AGMRKKGKVYETTEK 245 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH----TSTTEEEC---------CCEEEEET--TEE-EEETTH-HHHTCBTTBCCCCSH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHh----CCCceeecCCCCceeeeeEEEEEEC--CeE-EEEEEC-CCcCcCccccchHHH
Confidence 34578899999999999999999 5555667777787654332222221 111 246676 33210000 0 011
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
...+..+. ....+|.+++-.+. .++....+..+. ..+.. .-.+.++|+||+|+.+..+. ..+++.+.++.
T Consensus 246 ~~~~~~~~-~~~~ad~~llv~D~-~~~~s~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~ 315 (436)
T 2hjg_A 246 YSVLRALK-AIDRSEVVAVVLDG-EEGIIEQDKRIA-GYAHE-----AGKAVVIVVNKWDAVDKDES--TMKEFEENIRD 315 (436)
T ss_dssp HHHHHHHH-HHHHCSEEEEEEET-TTCCCHHHHHHH-HHHHH-----TTCEEEEEEECGGGSCCCTT--HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCEEEEEEcC-CcCCcHHHHHHH-HHHHH-----cCCcEEEEEECccCCCcchH--HHHHHHHHHHH
Confidence 11222211 11346776663322 221111111111 11111 11458999999999876431 23455555554
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..... ...+++++||++|.|++++.+.+..
T Consensus 316 ~l~~~----------~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 316 HFQFL----------DYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp HCGGG----------TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred hcccC----------CCCCEEEEecccCCCHHHHHHHHHH
Confidence 43211 2346789999999999999876653
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=3.3e-13 Score=122.45 Aligned_cols=185 Identities=19% Similarity=0.150 Sum_probs=95.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cc----h
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VK----H 105 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~----~ 105 (263)
...-++|+|+||||||||+|+|+ +....++.+.+|+|++.....+...+ .. ..++|+ +|.--.. .. +
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~----g~~~~~v~~~~gtT~d~~~~~i~~~g--~~-~~l~Dt-~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEVFIDG--RK-YVFVDT-AGLRRKSRVEPRTVE 250 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEEEETT--EE-EEESSC-SCC-----------C
T ss_pred cCceEEEECCCCCCHHHHHHHHh----CCcccccCCCCCCcCCceEEEEEECC--EE-EEEEEC-CCCccccccchhhHH
Confidence 34578999999999999999999 65557788888876554333333221 11 134565 3321000 00 0
Q ss_pred h--HHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744 106 S--LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK 183 (263)
Q Consensus 106 ~--~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~ 183 (263)
. ....+. .+ ..+|.+++-.......... +. .+...+... -.+.++|+||+|+.+..+ ...+++.+
T Consensus 251 ~~~~~~~~~-~i---~~ad~vllv~d~~~~~~~~-~~-~i~~~l~~~-----~~~~ilv~NK~Dl~~~~~--~~~~~~~~ 317 (439)
T 1mky_A 251 KYSNYRVVD-SI---EKADVVVIVLDATQGITRQ-DQ-RMAGLMERR-----GRASVVVFNKWDLVVHRE--KRYDEFTK 317 (439)
T ss_dssp CSCCHHHHH-HH---HHCSEEEEEEETTTCCCHH-HH-HHHHHHHHT-----TCEEEEEEECGGGSTTGG--GCHHHHHH
T ss_pred HHHHHHHHH-HH---hhCCEEEEEEeCCCCCCHH-HH-HHHHHHHHc-----CCCEEEEEECccCCCchh--hHHHHHHH
Confidence 0 001111 11 2456666633221111111 10 001111110 134899999999987542 12455555
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
.++..... ....+++.+||++|.|+++|.+.+..... ...+.+.++.|++||+
T Consensus 318 ~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~~~~~----------------~~~~~i~t~~ln~~l~ 370 (439)
T 1mky_A 318 LFREKLYF----------IDYSPLIFTSADKGWNIDRMIDAMNLAYA----------------SYTTKVPSSAINSALQ 370 (439)
T ss_dssp HHHHHCGG----------GTTSCEEECBTTTTBSHHHHHHHHHHHHH----------------HHTCCCCHHHHHHHHH
T ss_pred HHHHHhcc----------CCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------hhcccCCHHHHHHHHH
Confidence 55433221 12346788999999999999988764321 1134567778887775
No 21
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.37 E-value=7.4e-13 Score=107.62 Aligned_cols=186 Identities=16% Similarity=0.203 Sum_probs=83.3
Q ss_pred eEEEecceeEeCCcccCCCcc---eEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCc
Q 024744 11 AVRIDETTHEFSNSHENDDVS---VGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA 86 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~---~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~ 86 (263)
++++++++++|+. ..+.+.. -..++|+|++|||||||+|+|+ +.. .+.+.+..|++.... .+.... .
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~----g~~~~~~~~~~~G~~~~~~--~~~~~~-~- 73 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLIN--LFEVAD-G- 73 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEE--EEEEET-T-
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh----CCCccccccCCCccceeeE--EEEecC-C-
Confidence 5899999999984 4454432 2379999999999999999998 433 334455556532211 111101 1
Q ss_pred ceeeeeeecCcceEee----cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEE
Q 024744 87 LVEEWVELANGCICCT----VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVI 162 (263)
Q Consensus 87 ~~~~~~~l~~g~~~~~----~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iiv 162 (263)
..++++ +|..... .+..+...+.........++.+++..+ +.++....... +...+. ... ++.+++
T Consensus 74 --~~l~Dt-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~~~~~-~~~~~~-~~~----~~~~~v 143 (210)
T 1pui_A 74 --KRLVDL-PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMD-IRHPLKDLDQQ-MIEWAV-DSN----IAVLVL 143 (210)
T ss_dssp --EEEEEC-CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCCHHHHH-HHHHHH-HTT----CCEEEE
T ss_pred --EEEEEC-cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEE-CCCCCchhHHH-HHHHHH-HcC----CCeEEE
Confidence 235666 4431110 112233334444432245566555332 22221111100 001111 111 337788
Q ss_pred EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.||+|+.+..+.....+.+++.++. |.. .-..+++||+++.|++++.+++.+.
T Consensus 144 ~nK~D~~s~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 144 LTKADKLASGARKAQLNMVREAVLA--FNG-----------DVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHGG--GCS-----------CEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred EecccCCCchhHHHHHHHHHHHHHh--cCC-----------CCceEEEeecCCCCHHHHHHHHHHH
Confidence 9999998753110012233333322 110 1235679999999999999888754
No 22
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.35 E-value=5.8e-13 Score=120.88 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=80.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
+|.|+|+|.||+|||||+|+|+ +.+.+++.+.+|.|++.....+...+ ..+ .++|+ +|.... ....+.+.+
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~-~l~DT-~G~~~~-~~~~~~~~~ 71 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTRDPVQDTVEWYG--KTF-KLVDT-CGVFDN-PQDIISQKM 71 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHH----C--------------CCSEEEEEETT--EEE-EEEEC-TTTTSS-GGGCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCCccceeeEEEEECC--eEE-EEEEC-CCcccc-ccchHHHHH
Confidence 3689999999999999999999 77778888888876654443333322 222 57787 443210 011122223
Q ss_pred HHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
...... ...+|.+++-.++.......... +...+... . ++.++|+||+|+.+.. ..... ....
T Consensus 72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~--i~~~l~~~-~----~p~ilv~NK~D~~~~~-----~~~~~---~~~~- 135 (439)
T 1mky_A 72 KEVTLNMIREADLVLFVVDGKRGITKEDES--LADFLRKS-T----VDTILVANKAENLREF-----EREVK---PELY- 135 (439)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCCCHHHHH--HHHHHHHH-T----CCEEEEEESCCSHHHH-----HHHTH---HHHG-
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHH--HHHHHHHc-C----CCEEEEEeCCCCcccc-----HHHHH---HHHH-
Confidence 322211 25789988865543222221111 11111111 1 4489999999975320 01110 1111
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+++++||.+|.|+++|.+++..
T Consensus 136 ----------~lg~~~~~~iSA~~g~gv~~L~~~i~~ 162 (439)
T 1mky_A 136 ----------SLGFGEPIPVSAEHNINLDTMLETIIK 162 (439)
T ss_dssp ----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ----------hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 113345789999999999999988754
No 23
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=2.4e-13 Score=123.96 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=89.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee---cchhH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKHSL 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~ 107 (263)
...-++++|.+|+|||||+|+++ +.....+.+.+|+|.+.....+... +.. ..++|+ +|..-.. ...+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~----~~~~~~~~~~~gtt~~~~~~~~~~~--~~~-~~l~DT-~G~~~~~~~~~~~e~ 265 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFTYN--QQE-FVIVDT-AGMRKKGKVYETTEK 265 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH----TSTTEEECC------CTTSEEEEET--TEE-EEETTG-GGTTTBTTBCCCCSH
T ss_pred ccceeEEecCCCCCHHHHHHHHh----CCCccccCCCCCeEEEEEEEEEEEC--Cce-EEEEEC-CCCCcCcccchHHHH
Confidence 34578899999999999999999 5544677777887554332222222 111 246777 4421000 00111
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
...+..+. ....+|.+++-.+........... + ...+.. . -++.++|+||+|+.+..+ ...+++.+.++.
T Consensus 266 ~~~~~~~~-~~~~ad~~llviD~~~~~~~~~~~-~-~~~~~~----~-~~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~ 335 (456)
T 4dcu_A 266 YSVLRALK-AIDRSEVVAVVLDGEEGIIEQDKR-I-AGYAHE----A-GKAVVIVVNKWDAVDKDE--STMKEFEENIRD 335 (456)
T ss_dssp HHHHHHHH-HHHHCSEEEEEEETTTCCCHHHHH-H-HHHHHH----T-TCEEEEEEECGGGSCCCS--SHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhCCEEEEEEeCCCCcCHHHHH-H-HHHHHH----c-CCCEEEEEEChhcCCCch--HHHHHHHHHHHH
Confidence 12222221 113467766633321111111110 0 111111 1 145899999999987643 245667777766
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+.. ...+++++||++|.|++++..++..
T Consensus 336 ~~~~~----------~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 336 HFQFL----------DYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp HCGGG----------TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred hcccC----------CCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 54321 3346889999999999999887754
No 24
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.35 E-value=1.8e-12 Score=110.16 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=92.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
....++++|.+|||||||+|+|+ |.+. .+.+.+|.|.......+...+ .. ..++|+ +|..-.. .....+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~----g~~~-~~~~~~~~t~~~~~~~~~~~~--~~-~~l~Dt-pG~~~~~-~~~~~~~ 71 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALT----GLRQ-HVGNWPGVTVEKKEGIMEYRE--KE-FLVVDL-PGIYSLT-AHSIDEL 71 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHH----TTCE-EEEECTTSSCEEEEEEEEETT--EE-EEEEEC-CCCSCCC-SSCHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHh----CCCc-ccCCCCCeEEEeeEEEEEECC--ce-EEEEeC-CCccccc-cCCHHHH
Confidence 34678999999999999999999 5544 556777765544333333221 11 257787 4432111 1112222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
+.+.......+|.+++ +.|............++... . .+|.++|+||+|+.+........+.+.+.+.
T Consensus 72 ~~~~~~~~~~~d~vi~----v~D~~~~~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---- 139 (271)
T 3k53_A 72 IARNFILDGNADVIVD----IVDSTCLMRNLFLTLELFEM-E---VKNIILVLNKFDLLKKKGAKIDIKKMRKELG---- 139 (271)
T ss_dssp HHHHHHHTTCCSEEEE----EEEGGGHHHHHHHHHHHHHT-T---CCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----
T ss_pred HHHHhhhccCCcEEEE----EecCCcchhhHHHHHHHHhc-C---CCCEEEEEEChhcCcccccHHHHHHHHHHcC----
Confidence 2222222357899888 55554432221111111111 1 1448999999998654332223344444331
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. +++++||.+|.|++++.+++...
T Consensus 140 -~-------------~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 140 -V-------------PVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp -S-------------CEEECBGGGTBTHHHHHHHHHHH
T ss_pred -C-------------cEEEEEeCCCCCHHHHHHHHHHH
Confidence 1 36789999999999999887643
No 25
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.34 E-value=1.5e-12 Score=110.82 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=87.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l 111 (263)
..|+++|.||+|||||+|+|++. + ..+.+.+|.|+......+.. +.. ..++|+ +|.. ... ....+.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~----~-~~v~~~pg~tv~~~~~~~~~---~~~-l~l~Dt-pG~~--~~~~~~~~e~v 71 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH----N-QRVGNWPGVTVERKSGLVKK---NKD-LEIQDL-PGIY--SMSPYSPEAKV 71 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC----C-CCCCSSSCCCCSCEEEECTT---CTT-EEEEEC-CCCS--CSSCSSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCCcEEEEEEEEec---CCe-EEEEEC-CCcC--ccCCCChHHHH
Confidence 46899999999999999999943 2 13455567655433322322 111 257788 4431 111 1112233
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.+.......+|.+++ +.|............++.. .. +|.++|+||+|+.+........+.+.+.+ +
T Consensus 72 ~~~~~~~~~~d~vi~----V~D~t~~e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g-- 137 (272)
T 3b1v_A 72 ARDYLLSQRADSILN----VVDATNLERNLYLTTQLIE-TG----IPVTIALNMIDVLDGQGKKINVDKLSYHL---G-- 137 (272)
T ss_dssp HHHHHHTTCCSEEEE----EEEGGGHHHHHHHHHHHHH-TC----SCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--
T ss_pred HHHHHhcCCCCEEEE----EecCCchHhHHHHHHHHHh-cC----CCEEEEEEChhhCCcCCcHHHHHHHHHHc---C--
Confidence 222222246888887 4554443222111112221 11 45899999999865432222334443333 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ +++++||++|.|++++..++..
T Consensus 138 ~-------------~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 138 V-------------PVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp S-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred C-------------CEEEEEccCCCCHHHHHHHHHH
Confidence 1 4788999999999999988765
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.32 E-value=3.7e-12 Score=107.61 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=89.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
...++++|.+|+|||||+|+|+ +.+.. +.+.+|.|+......+... +.. ..++|+ +|...... ....+.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~----g~~~~-~~~~pg~tv~~~~~~~~~~--~~~-~~l~Dt-pG~~~~~~-~~~~e~v 74 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT----GTKQY-VANWPGVTVEKKEGVFTYK--GYT-INLIDL-PGTYSLGY-SSIDEKI 74 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH----TTCEE-EEECTTSCCEEEEEEEEET--TEE-EEEEEC-CCCSSCCS-SSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH----CCCCc-ccCCCCceEEEEEEEEEEC--CeE-EEEEEC-CCcCccCC-CCHHHHH
Confidence 4568999999999999999999 54443 5666776554433333321 111 257888 45321111 1112222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.+.......+|.+++-.+. .++..... ...++... . +|.++|+||+|+.+........+.+.+.+ +
T Consensus 75 ~~~~~~~~~~d~ii~V~D~-t~~~~~~~---~~~~l~~~-~----~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---g-- 140 (258)
T 3a1s_A 75 ARDYLLKGDADLVILVADS-VNPEQSLY---LLLEILEM-E----KKVILAMTAIDEAKKTGMKIDRYELQKHL---G-- 140 (258)
T ss_dssp HHHHHHHSCCSEEEEEEET-TSCHHHHH---HHHHHHTT-T----CCEEEEEECHHHHHHTTCCBCHHHHHHHH---C--
T ss_pred HHHHHhhcCCCEEEEEeCC-CchhhHHH---HHHHHHhc-C----CCEEEEEECcCCCCccchHHHHHHHHHHc---C--
Confidence 2222222578888884332 22332211 11122221 1 45899999999875433222334443333 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++++||++|.|++++.+++..
T Consensus 141 ~-------------~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 141 I-------------PVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp S-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred C-------------CEEEEEeeCCcCHHHHHHHHHH
Confidence 1 4788999999999999988765
No 27
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.29 E-value=7.9e-12 Score=97.33 Aligned_cols=157 Identities=17% Similarity=0.065 Sum_probs=71.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+|+++ +..........|++.... +....... ...++|+ +|. ..+......
T Consensus 4 ki~~vG~~~~GKSsli~~l~----~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~i~D~-~g~------~~~~~~~~~ 68 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG----GVEDGPEAEAAGHTYDRS---IVVDGEEA-SLMVYDI-WEQ------DGGRWLPGH 68 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC----CC----------CEEEEE---EEETTEEE-EEEEEEC-C-----------------
T ss_pred EEEEECCCCCCHHHHHHHHc----CccccCCCCccccceEEE---EEECCEEE-EEEEEEC-CCC------ccchhhhhh
Confidence 47899999999999999998 444444444445432211 11111111 1245666 332 111111111
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ...|.+++-. .+.++..+.........+..... ..-+|.++|+||+|+.+..+. ..+......+..+ +
T Consensus 69 ~~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~- 138 (166)
T 3q72_A 69 CM---AMGDAYVIVY-SVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--C- 138 (166)
T ss_dssp -------CCEEEEEE-ETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--C-
T ss_pred hh---hhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--C-
Confidence 21 3456655522 23445443222111111111111 112558999999999875432 2233333322221 1
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++..++..
T Consensus 139 ------------~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 139 ------------KFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp ------------EEEECBGGGTBSHHHHHHHHHH
T ss_pred ------------cEEEeccCCCCCHHHHHHHHHH
Confidence 4688999999999999888754
No 28
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=1.7e-11 Score=103.18 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=38.2
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~ 70 (263)
+.-++.+.++++++|++|||||||++.|... ..|.+++++..|++.
T Consensus 7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~ 53 (262)
T 1yrb_A 7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV 53 (262)
T ss_dssp CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC
T ss_pred cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 4445678889999999999999999999642 258899999999875
No 29
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.27 E-value=7.8e-13 Score=116.09 Aligned_cols=163 Identities=18% Similarity=0.146 Sum_probs=82.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe--ecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~--~~~~~~~~~ 110 (263)
+-|+|+|++|||||||+|+|+.. +.. +.+.+.+|.......+.... ... ..++|+ +|.+.. ..+......
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~----~~~-i~~~~ftTl~p~~g~v~~~~-~~~-~~l~Dt-PG~i~~a~~~~~l~~~f 230 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSA----KPK-IADYHFTTLVPNLGMVETDD-GRS-FVMADL-PGLIEGAHQGVGLGHQF 230 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEE----CCE-ESSTTSSCCCCCEEEEECSS-SCE-EEEEEH-HHHHHHTTCTTTTHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcC----CCc-cccCCccccCceEEEEEeCC-Cce-EEEecC-CCCcccccccchhHHHH
Confidence 45899999999999999999853 222 23444444443333333221 111 246676 443210 001111222
Q ss_pred HHHHHHhccCCcEEEEcccCCCC---chhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 111 LEQLVQRKERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~---p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
++.+ ...+.+++-.+. .+ ..++.+...+...+..+.....-+|.++|+||+|+.+.. +.+.+..+.
T Consensus 231 l~~i----~~~d~ll~VvD~-s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~ 299 (342)
T 1lnz_A 231 LRHI----ERTRVIVHVIDM-SGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA------ENLEAFKEK 299 (342)
T ss_dssp HHHH----HHCCEEEEEEES-SCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH------HHHHHHHHH
T ss_pred HHHH----HhccEEEEEEEC-CcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH------HHHHHHHHH
Confidence 2222 245666553332 22 222221111112222211000114589999999998642 223222222
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+... .+++.+||++++|+++|..++..
T Consensus 300 l~~~-------------~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 300 LTDD-------------YPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp CCSC-------------CCBCCCSSCCSSTTHHHHHHHHH
T ss_pred hhcC-------------CCEEEEECCCCcCHHHHHHHHHH
Confidence 2211 25789999999999999988764
No 30
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.27 E-value=4e-12 Score=99.30 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=36.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|+||+|+.+..+. ..+...+..+..+ + +++.+||++|.|++++..++..
T Consensus 110 ~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 110 LPVILVGNKSDLARSREV--SLEEGRHLAGTLS--C-------------KHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp CCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred CCEEEEeeCcchhhcccC--CHHHHHHHHHHcC--C-------------cEEEecCccCCCHHHHHHHHHH
Confidence 558999999999754432 2333333333321 1 4678999999999999887654
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.26 E-value=7e-12 Score=98.82 Aligned_cols=160 Identities=10% Similarity=0.069 Sum_probs=79.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
...-|+++|.+|||||||+|+|+.. +.. ....++.+.......+...+... ...++|+ +|. ..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~ 74 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITTIGVDFKIRTVEINGEKV-KLQIWDT-AGQ------ERFRTI 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTTBSEEEEEEEEEETTEEE-EEEEEEE-TTG------GGCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCCceeEEEEEEEEECCEEE-EEEEEcC-CCc------hhhhhh
Confidence 3456889999999999999999843 222 12222211111111111111111 1246677 331 000000
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+ +.++..+.........+.... .-++.++|+||+|+.+.... .........+..+
T Consensus 75 ~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 144 (181)
T 3tw8_B 75 TSTY---YRGTHGVIVVYD-VTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG- 144 (181)
T ss_dssp CGGG---GTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred HHHH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhccc--CHHHHHHHHHHcC-
Confidence 1111 135677777332 334443322111111111111 11457999999998765432 2233333333332
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ +++.+||++|.|++++.+++..
T Consensus 145 -~-------------~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 145 -I-------------QLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp -C-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred -C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence 1 4678999999999999888764
No 32
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.26 E-value=1.4e-12 Score=119.17 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=72.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH--H
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL--E 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l--~ 112 (263)
|+|+|.+|||||||+|+|+ +.+.+++.+.+|+|++.....+...+ .. ..++|+ +|. .... +..+.+ .
T Consensus 236 V~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~~~i~~~g--~~-l~liDT-~G~--~~~~-~~ve~~gi~ 304 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIEECFIHDK--TM-FRLTDT-AGL--REAG-EEIEHEGIR 304 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC----------------------CEEEEETT--EE-EEEEC---------------------
T ss_pred EEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEEEEEEECC--eE-EEEEEC-CCC--Ccch-hHHHHHHHH
Confidence 8899999999999999999 66667788888876654433333321 11 246777 442 1111 111111 1
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHH---HHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~---~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
........+|.+++-.+. .++.... ........+. .++.++|+||+|+.+... ... +.+...+
T Consensus 305 ~~~~~~~~aD~vl~VvD~-s~~~s~~~~~~~~~~l~~l~-------~~piIvV~NK~Dl~~~~~----~~~--~~l~~~~ 370 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDL-GTERLDDELTEIRELKAAHP-------AAKFLTVANKLDRAANAD----ALI--RAIADGT 370 (476)
T ss_dssp ---CCCSSCSEEEEEEET-TTCSSGGGHHHHHHHHHHCT-------TSEEEEEEECTTSCTTTH----HHH--HHHHHHH
T ss_pred HHHhhcccCCEEEEEEEC-CCCcchhhhHHHHHHHHhcC-------CCCEEEEEECcCCCCccc----hhH--HHHHhcC
Confidence 222223578888884332 2222110 1111111111 145899999999987642 111 2233220
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
+.+++.+||++|.|+++|.+++....
T Consensus 371 --------------~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 371 --------------GTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp --------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred --------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 12468899999999999999887543
No 33
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.26 E-value=3.2e-12 Score=101.02 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=80.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH-HHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ-ALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~-~l~ 112 (263)
-++|+|.+|||||||+|+|+. .+...+.+.+++|.+.....+... +.. ..++|+ +|.. .....+.. .+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~----~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~~--~~~~~~~~~~~~ 75 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAG----REAAIVTDIAGTTRDVLREHIHID--GMP-LHIIDT-AGLR--EASDEVERIGIE 75 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHT----SCCSCCCSSTTCCCSCEEEEEEET--TEE-EEEEEC-CCCS--CCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC----CCcceeeCCCCceeceeeEEEEEC--CeE-EEEEEC-CCcc--cchhHHHHHHHH
Confidence 578999999999999999994 333334455555443322222221 111 246676 4421 11111111 122
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
........+|.+++-.+.. ++.......+. ..+.... ..-+|.++|+||+|+.+...
T Consensus 76 ~~~~~~~~ad~~i~v~D~~-~~~s~~~~~~~-~~~~~~~--~~~~p~ilv~NK~Dl~~~~~------------------- 132 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGT-TTDAVDPAEIW-PEFIARL--PAKLPITVVRNKADITGETL------------------- 132 (172)
T ss_dssp HHHHHHHTCSEEEEEEETT-TCCCCSHHHHC-HHHHHHS--CTTCCEEEEEECHHHHCCCC-------------------
T ss_pred HHHHHHHhCCEEEEEEECC-CCCCHHHHHHH-HHHHHhc--ccCCCEEEEEECccCCcchh-------------------
Confidence 2222224678877744432 21111111111 1111111 01145899999999864320
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
... .. ...+++.+||++|.|++++..++.+.
T Consensus 133 ~~~-~~----~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 133 GMS-EV----NGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp EEE-EE----TTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhh-hc----cCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 000 00 12357889999999999999888653
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=5.6e-12 Score=99.49 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=77.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|+|||||+|+++.... ......+. .+.+.. .+...+... -..++|+ +|. ..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~~t--~~~~~~~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~ 76 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAF----LAGTFIST--VGIDFRNKVLDVDGVKV-KLQMWDT-AGQ------ERFRSV 76 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC----CCCCCCCC--CSCEEEEEEEEETTEEE-EEEEEEC-CCC------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC----CCCCcCCc--eeeEEEEEEEEECCEEE-EEEEEeC-CCc------HHHHHH
Confidence 3578999999999999999985421 10011111 222111 111111111 1245677 332 111111
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+ +.++..+.........+..... ..++.++|+||+|+.+..+. ..+...+..+..+
T Consensus 77 ~~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 147 (180)
T 2g6b_A 77 THAY---YRDAHALLLLYD-VTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG- 147 (180)
T ss_dssp --CC---GGGCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT-
T ss_pred HHHH---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCccccc--CHHHHHHHHHHcC-
Confidence 1111 146777777332 3333332211100011111111 12458999999999875432 2233333333322
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++..++..
T Consensus 148 -~-------------~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 148 -L-------------PFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp -C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred -C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999988764
No 35
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.25 E-value=2.8e-11 Score=99.83 Aligned_cols=168 Identities=11% Similarity=0.091 Sum_probs=80.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhH-
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSL- 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~- 107 (263)
..+-|+|+|.+|||||||+|+|+ +.+.. ..+.+++|........... .. -..++|+ +|..-.. .+..+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~----~~~~~-~~~~~~~t~~~~~~~~~~~--~~-~~~l~Dt-pG~~~~~~~~~~~~~ 98 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS----RANVD-VQSYSFTTKNLYVGHFDHK--LN-KYQIIDT-PGLLDRAFENRNTIE 98 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT----TTCEE-EECC-----CEEEEEEEET--TE-EEEEEEC-TTTTTSCGGGCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh----CCCCc-cCCCCCcceeeeeeeeecC--CC-eEEEEEC-CCCcCcccchhhhHH
Confidence 45678999999999999999999 44444 3344444333322211111 11 1246787 4431111 01111
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHH-HHHHH
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLD-ELEKE 184 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~-~~~~~ 184 (263)
...+..+ ....|.+++-.+ +.++..+ .........+.... ..++.++|+||+|+.+..+...... .+.+.
T Consensus 99 ~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 171 (228)
T 2qu8_A 99 MTTITAL---AHINGVILFIID-ISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI 171 (228)
T ss_dssp HHHHHHH---HTSSEEEEEEEE-TTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHHHHHHHHH
T ss_pred HHHHHHh---hccccEEEEEEe-cccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhhHHHHHHHHHHH
Confidence 1223322 235566666332 2222111 11000011111110 1245899999999987643322211 22222
Q ss_pred HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+..++ ...++.+||++|.|++++..++..
T Consensus 172 ~~~~~~-------------~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 172 LDNVKN-------------PIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp HHHCCS-------------CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhcCC-------------CceEEEEecccCCCHHHHHHHHHH
Confidence 222211 125788999999999999988764
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=95.47 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=77.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+|+++ +.+........|.+.. ...+...+... -..++|+ +|.. .. . ...+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~D~-~g~~--~~--~-~~~~~ 71 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA----GKQERDLHEQLGEDVY--ERTLTVDGEDT-TLVVVDT-WEAE--KL--D-KSWSQ 71 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH----CC-----CCCSSSSEE--EEEEEETTEEE-EEEEECC-C------------CHHH
T ss_pred EEEEEECCCCccHHHHHHHHh----cCCCccccCcccccee--EEEEEECCEEE-EEEEEec-CCCC--cc--c-hhhhH
Confidence 458899999999999999999 4443333333443211 11111111111 1245666 3321 10 0 11222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ....|.+++-. .+.++..+.........+..... ..-+|.++|+||+|+.+..+. ..+..+......+ .
T Consensus 72 ~~~--~~~~~~~i~v~-d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~ 143 (175)
T 2nzj_A 72 ESC--LQGGSAYVIVY-SIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREV--SVEEGRACAVVFD--C 143 (175)
T ss_dssp HHT--TTSCSEEEEEE-ETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT--S
T ss_pred Hhh--cccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccccc--CHHHHHHHHHHcC--C
Confidence 221 13456665522 23344433222111111111101 112558999999999875432 1233333222221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++..++..
T Consensus 144 -------------~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 144 -------------KFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp -------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred -------------eEEEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999988764
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.24 E-value=4.5e-12 Score=98.51 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=79.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.-++++|.+|+|||||+|+++... . ......+ ..... ..+...+.. .-..++|+ +|. ..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~----~--~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~D~-~G~------~~~~~~~ 69 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE----F--VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDYAAIR 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC----C--CSCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC---------CHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc----c--CCCCCCC-cceEEEEEEEECCEE-EEEEEEEC-CCc------chhHHHH
Confidence 357899999999999999998532 1 0111111 11110 001111111 11246777 442 1122222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ...|.+++-.+ +.++..+.........+...... ..++.++|+||+|+.+..+. ..++..+..+..+
T Consensus 70 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 140 (168)
T 1u8z_A 70 DNYF---RSGEGFLCVFS-ITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN-- 140 (168)
T ss_dssp HHHH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--
T ss_pred HHHh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCcc--CHHHHHHHHHHcC--
Confidence 3332 24566666222 33444332211111111111110 11458999999999765432 2344555544432
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 141 ~-------------~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 141 V-------------NYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred C-------------eEEEeCCCCCCCHHHHHHHHHH
Confidence 1 4688999999999999988754
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=98.11 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=77.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-|+|+|.+|+|||||+|+|+.. +... ...+. .+.+. ..+...+... -..++|+ +|. ..+....
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~----~~~~-~~~~t--~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~ 92 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD----TFCE-ACKST--VGVDFKIKTVELRGKKI-RLQIWDT-AGQ------ERFNSIT 92 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-------------CC--TTEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCCc-CCCCc--cceeEEEEEEEECCeEE-EEEEEeC-CCc------HHHHHHH
Confidence 5789999999999999999843 2211 11111 11111 1111111111 1246777 331 2233333
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
...+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+..++..+.+ ..
T Consensus 93 ~~~~---~~~d~iilV~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~-~~ 163 (192)
T 2il1_A 93 SAYY---RSAKGIILVYD-ITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREI--TRQQGEKFAQQI-TG 163 (192)
T ss_dssp HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTS-TT
T ss_pred HHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccccccc--CHHHHHHHHHhc-CC
Confidence 3333 25677777332 333333222110011111110 112458999999999765422 223333333322 11
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+||++|.|++++..++..
T Consensus 164 -------------~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 164 -------------MRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp -------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 24678999999999999988754
No 39
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.24 E-value=6.6e-12 Score=107.71 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=48.4
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc--cCCCC
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ--YKSSQ 234 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~--~~~~~ 234 (263)
.+.++|+||+|+.+.... ..+.++..... ...++.+++++||++|.|++++.+++..+. +++.+
T Consensus 193 ~~~i~V~NK~Dl~~~~~~------~~~~~~~~~~~--------~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~ 258 (299)
T 2aka_B 193 QRTIGVITKLDLMDEGTD------ARDVLENKLLP--------LRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHP 258 (299)
T ss_dssp SSEEEEEECGGGSCTTCC------CHHHHTTCSSC--------CTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCT
T ss_pred CeEEEEEEccccCCCCch------HHHHHhCCcCc--------CCCCcEEEECCChhhccccccHHHHHHHHHHHHhcCC
Confidence 348999999999876421 11222211000 011344688999999999999998877532 22222
Q ss_pred CCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 235 NLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 235 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
...+ .+..+.+..+..||+
T Consensus 259 ~~~~---------~~~r~~~~~l~~~l~ 277 (299)
T 2aka_B 259 SYRH---------LADRMGTPYLQKVLN 277 (299)
T ss_dssp TTGG---------GGGGCSHHHHHHHHH
T ss_pred cccc---------chhhhCHHHHHHHHH
Confidence 2221 134566677777765
No 40
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.24 E-value=5.8e-12 Score=98.64 Aligned_cols=159 Identities=19% Similarity=0.131 Sum_probs=77.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
...++++|++|||||||+|+|++... .+.+.++.|+......+... +.. ..++|+ +|..-... ....+.+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-----~~~~~~~~t~~~~~~~~~~~--~~~-l~i~Dt-~G~~~~~~-~~~~~~~ 72 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-----YIGNWPGVTVEKKEGEFEYN--GEK-FKVVDL-PGVYSLTA-NSIDEII 72 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-----SCC-----CCCCCEEEEEET--TEE-EEEEEC-CCCSCSSS-SSHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-----eccCCCCcceeeeEEEEEEC--CcE-EEEEEC-CCcccCCC-cchhHHH
Confidence 35789999999999999999995321 01122333222221112111 111 246777 44211110 1111222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.....+...+|.+++-.+ ..+...... +. ..+... . +|.++|.||+|+.+........+.+.+.+ +
T Consensus 73 ~~~~~~~~~~~~~i~v~D-~~~~~~~~~--~~-~~~~~~-~----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---~-- 138 (165)
T 2wji_A 73 ARDYIINEKPDLVVNIVD-ATALERNLY--LT-LQLMEM-G----ANLLLALNKMDLAKSLGIEIDVDKLEKIL---G-- 138 (165)
T ss_dssp HHHHHHHHCCSEEEEEEE-TTCHHHHHH--HH-HHHHHT-T----CCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--
T ss_pred HHHHHhcCCCCEEEEEec-CCchhHhHH--HH-HHHHhc-C----CCEEEEEEchHhccccChhhHHHHHHHHh---C--
Confidence 222211236788777322 222222211 11 111111 1 45899999999864322111123332222 1
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 139 ~-------------~~~~~SA~~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 139 V-------------KVVPLSAAKKMGIEELKKAISI 161 (165)
T ss_dssp S-------------CEEECBGGGTBSHHHHHHHHHH
T ss_pred C-------------CEEEEEcCCCCCHHHHHHHHHH
Confidence 1 3678999999999999888754
No 41
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.23 E-value=9.9e-12 Score=100.32 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=82.1
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
.....-|+|+|.+|||||||+|+++.... .....++ .... ...+...+.. .-..++|+ +|. ..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~ 75 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDY 75 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cceEEEEEEEECCEE-EEEEEEcC-CCh------hhh
Confidence 34556789999999999999999985320 1111111 1111 0011111111 11246777 332 122
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
......... ..|.+++-. .+.++..+.........+..... ...++.++|+||+|+.+..+. ..+.+.+..+.
T Consensus 76 ~~~~~~~~~---~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~ 148 (206)
T 2bov_A 76 AAIRDNYFR---SGEGFLCVF-SITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQ 148 (206)
T ss_dssp HHHHHHHHH---HCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHH
T ss_pred HHHHHHHHh---hCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccc--cHHHHHHHHHH
Confidence 222333332 456666622 23344333221110111111110 012458999999999865422 23455555544
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+ . +++.+||++|.|++++..++..
T Consensus 149 ~~--~-------------~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 149 WN--V-------------NYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp HT--C-------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred hC--C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 32 1 3678999999999999888753
No 42
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.23 E-value=7.4e-12 Score=110.61 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=83.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec--chhHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV--KHSLV 108 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~ 108 (263)
..+.++++|++|||||||+|+|+. ... .+.+.+++|.......+... +. ...++|+ +|...... .....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~----~~~-~~~~~~~~t~~~~~~~~~~~--~~-~~~l~Dt-~G~~~~~~~~~~~~~ 236 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT----AKP-EIASYPFTTRGINVGQFEDG--YF-RYQIIDT-PGLLDRPISERNEIE 236 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS----SCC-EEECCTTCSSCEEEEEEEET--TE-EEEEEEC-TTTSSSCSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCeeeceeEEEEEec--Cc-eEEEEeC-CCccccchhhhhHHH
Confidence 456899999999999999999994 332 23344444343322222111 11 1246777 44321111 11111
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCch--hHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH 186 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~--~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~ 186 (263)
...+......+|.+++-.+ +.++. ...........+..... -++.++|+||+|+.+.. .++.+.+.++
T Consensus 237 --~~~~~~~~~~ad~illV~D-~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~----~~~~~~~~~~ 306 (357)
T 2e87_A 237 --KQAILALRYLGNLIIYIFD-PSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE----NIKRLEKFVK 306 (357)
T ss_dssp --HHHHHGGGGTCSEEEEEEC-TTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH----HHHHHHHHHH
T ss_pred --HHHHHHHHhcCCEEEEEEe-CCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH----HHHHHHHHHH
Confidence 1112122235677666332 12221 11111100111111110 14589999999998653 2333333333
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+ .+++.+||++|+|++++.+++.+
T Consensus 307 ~~~---------------~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 307 EKG---------------LNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp HTT---------------CCCEECBTTTTBTHHHHHHHHHH
T ss_pred hcC---------------CCeEEEeCCCCcCHHHHHHHHHH
Confidence 211 14788999999999999988764
No 43
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.23 E-value=8.3e-12 Score=98.91 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=81.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...-|+++|.+|+|||||+|+|+... . ......+ ..... ..+...+.. .-..++|+ +|. ..+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~----~--~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~ 81 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE----F--VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDYAA 81 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC----C--CCSCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TCCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC----C--CCcCCCc-cceEEEEEEEECCEE-EEEEEEEC-CCC------cccHH
Confidence 34568899999999999999998532 1 1111111 11110 001111111 11246777 332 12222
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+. ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+..+. ..+++++..+..+
T Consensus 82 ~~~~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 154 (187)
T 2a9k_A 82 IRDNYFR---SGEGFLCVFS-ITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN 154 (187)
T ss_dssp HHHHHHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT
T ss_pred HHHHHhc---cCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC
Confidence 3333332 4566666222 3344333221111111111111 011458999999999765322 2345555554432
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 155 --~-------------~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 155 --V-------------NYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp --C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred --C-------------eEEEeCCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999988764
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.22 E-value=8.1e-12 Score=98.26 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=80.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc--hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE--RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d--~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..-++++|.+|+|||||+|+++..... .....+ .+.+ ...+...+... -..++|+ +|. ..+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~ 79 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM------ADCPHT-IGVEFGTRIIEVSGQKI-KLQIWDT-AGQ------ERFRA 79 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC------SSCTTS-CCCCEEEEEEEETTEEE-EEEEEEC-TTG------GGTCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-cceEEEEEEEEECCeEE-EEEEEEC-CCC------hHhhh
Confidence 456889999999999999999853210 111111 1111 11111111111 1246677 342 12222
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+ ...|.+++-.+ +.++............+..... .-++.++|+||+|+.+..+. ..+++++..+..+
T Consensus 80 ~~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 151 (179)
T 1z0f_A 80 VTRSYY---RGAAGALMVYD-ITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG 151 (179)
T ss_dssp HHHHHH---HTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT
T ss_pred hHHHHh---ccCCEEEEEEe-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence 233333 35677777333 3333322211100011111100 11458999999999764322 2344555444332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++..++.+
T Consensus 152 --~-------------~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 152 --L-------------LFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp --C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred --C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999887754
No 45
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.22 E-value=6.2e-11 Score=94.23 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=82.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|.+|||||||+++++. .......+..|.+. ..+... ... ..++|+ +|. ..+....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~----~~~~~~~~t~g~~~----~~~~~~--~~~-l~i~Dt-~G~------~~~~~~~ 77 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS----EDISHITPTQGFNI----KSVQSQ--GFK-LNVWDI-GGQ------RKIRPYW 77 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC----SCCEEEEEETTEEE----EEEEET--TEE-EEEEEC-SSC------GGGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc----CCCCcccCcCCeEE----EEEEEC--CEE-EEEEEC-CCC------HHHHHHH
Confidence 35688999999999999999984 33333344334211 111111 111 246777 332 1222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ...|.+++-.+ +.++..+.... ++...+... .. ..+|.++|.||+|+.+... .+++.+.+....
T Consensus 78 ~~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~- 146 (181)
T 1fzq_A 78 RSYF---ENTDILIYVID-SADRKRFEETGQELTELLEEE-KL-SCVPVLIFANKQDLLTAAP----ASEIAEGLNLHT- 146 (181)
T ss_dssp HHHH---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHTTCG-GG-TTCCEEEEEECTTSTTCCC----HHHHHHHTTGGG-
T ss_pred HHHh---CCCCEEEEEEE-CcCHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEECcCcccCCC----HHHHHHHhCchh-
Confidence 2222 36787777333 33443332211 111111110 01 1145899999999987542 234444332110
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ .. ..-.++.+||++|.|++++.+++..
T Consensus 147 -~-------~~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 147 -I-------RD-RVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp -C-------CS-SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -c-------cC-CceEEEEccCCCCCCHHHHHHHHHH
Confidence 0 00 0124788999999999999988765
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=98.44 Aligned_cols=159 Identities=12% Similarity=0.071 Sum_probs=79.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|||||||+|+|+...... ...++.+.......+...+... ...++|+ +|. ..+.....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~ 83 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTE-----SYISTIGVDFKIRTIELDGKTI-KLQIWDT-AGQ------ERFRTITS 83 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCS-----CCCCCSSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGCTTHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCcccceEEEEEEEECCEEE-EEEEEEC-CCc------HhhhhhHH
Confidence 468899999999999999998542110 1111111111111111111111 1246777 332 11112222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+..... .-++.++|+||+|+.+.... ..+......+..+ +
T Consensus 84 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 153 (196)
T 3tkl_A 84 SYY---RGAHGIIVVYD-VTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--I 153 (196)
T ss_dssp HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--C
T ss_pred HHH---hhCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence 222 35777777322 3334332211100111111111 12458999999999876532 2233333333332 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++..++..
T Consensus 154 -------------~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 154 -------------PFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp -------------CEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------cEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999887764
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=1e-11 Score=99.01 Aligned_cols=160 Identities=12% Similarity=0.102 Sum_probs=81.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-|+++|.+|||||||+|+++.. +..-..+. .+.....+... +.. ..++|+ +|. ...+ ...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~----~~~~~~~t----~~~~~~~~~~~--~~~-~~i~Dt-~G~--~~~~----~~~ 77 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPT----IGSNVEEIVIN--NTR-FLMWDI-GGQ--ESLR----SSW 77 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT----SCEEEECC----SCSSCEEEEET--TEE-EEEEEC-CC------C----GGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC----CCCcCcCC----CccceEEEEEC--CEE-EEEEEC-CCC--HhHH----HHH
Confidence 356889999999999999999942 22222222 22221112111 111 256777 442 1111 111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ...|.+++-.+ +.++..+.... ++...+... .. ...+.++|+||+|+.+.. ..+++.+.+....
T Consensus 78 ~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~- 146 (187)
T 1zj6_A 78 NTYY---TNTEFVIVVVD-STDRERISVTREELYKMLAHE-DL-RKAGLLIFANKQDVKECM----TVAEISQFLKLTS- 146 (187)
T ss_dssp HHHH---TTCCEEEEEEE-TTCTTTHHHHHHHHHHHHTSG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHHTGGG-
T ss_pred HHHh---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhch-hh-CCCeEEEEEECCCCcCCC----CHHHHHHHhChhh-
Confidence 2222 36788777333 33332222111 111111110 00 115589999999998653 2344555443210
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
+ ...+ -.++.+||++|.|++++.+++.+..
T Consensus 147 -~-------~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 147 -I-------KDHQ-WHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp -C-------CSSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -h-------cCCC-cEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 0001 1578899999999999999887543
No 48
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.21 E-value=1e-11 Score=99.25 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=81.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+++..... .....|.+.+...+... ... ..++|+ +|. ..+.....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~------~~~~~~~~ 85 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMRKITKG--NVT-IKLWDI-GGQ------PRFRSMWE 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEEET--TEE-EEEEEE-CCS------HHHHTTHH
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEEEEEeC--CEE-EEEEEC-CCC------HhHHHHHH
Confidence 35789999999999999999853211 01111122222212211 111 256777 432 22222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
..+ ..+|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+... .+++.+.+......
T Consensus 86 ~~~---~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~ 155 (188)
T 1zd9_A 86 RYC---RGVSAIVYMVD-AADQEKIEASKNELHNLLDKP-QL-QGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQ 155 (188)
T ss_dssp HHH---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred HHH---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCc-cc-CCCCEEEEEECCCCccCCC----HHHHHHHhChhhhc
Confidence 222 46788777333 33333332211 111111110 00 1145899999999987532 23343333211100
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. ....++.+||++|.|++++.+++...
T Consensus 156 ---------~-~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 156 ---------D-REICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp ---------S-SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ---------c-CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 0 11246789999999999999888653
No 49
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.21 E-value=3.2e-11 Score=94.11 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=36.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
++.++|+||+|+.+..+. .........+..+ . +++.+||++|.|++++.+++...
T Consensus 110 ~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 110 IPIMLVGNKCDESPSREV--QSSEAEALARTWK--C-------------AFMETSAKLNHNVKELFQELLNL 164 (172)
T ss_dssp CCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHHT
T ss_pred CCEEEEEEcccccccccc--CHHHHHHHHHHhC--C-------------eEEEecCCCCcCHHHHHHHHHHH
Confidence 458999999999765432 1222233222221 1 46789999999999999988653
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.20 E-value=2.2e-11 Score=96.98 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=80.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh---hhhcCCC-------C-cceeeeeeecCcceEe
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA---MINEGEG-------G-ALVEEWVELANGCICC 101 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~---~~~~~~~-------~-~~~~~~~~l~~g~~~~ 101 (263)
.-|+|+|.+|+|||||+|+++..... .....|.+.+.. .+..... . .....++|+ +|.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~--- 80 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFN-------SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT-AGL--- 80 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEE-CCS---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-------cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeC-CCc---
Confidence 46789999999999999999854210 000111111110 0110000 0 111256777 442
Q ss_pred ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHH
Q 024744 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDEL 181 (263)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~ 181 (263)
..+....... ...+|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+.... ..+.+
T Consensus 81 ---~~~~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~ 150 (195)
T 3bc1_A 81 ---ERFRSLTTAF---FRDAMGFLLLFD-LTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAV--KEEEA 150 (195)
T ss_dssp ---GGGHHHHHHT---TTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCS--CHHHH
T ss_pred ---HHHHHHHHHH---HcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHH
Confidence 2222222222 246788777332 3334333221110111111100 012458999999999764322 23444
Q ss_pred HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+..+..+ . +++.+||++|.|++++..++..
T Consensus 151 ~~~~~~~~--~-------------~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 151 RELAEKYG--I-------------PYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp HHHHHHHT--C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHcC--C-------------CEEEEECCCCCCHHHHHHHHHH
Confidence 44443332 1 4688999999999999888764
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.20 E-value=2.7e-11 Score=96.18 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=76.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+|+|+.... .....+++.......+...+ ......++|+ +|. ..+......
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~-~~~~~~i~Dt-~G~------~~~~~~~~~ 71 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF------VDEYDPTIEDSYRKQVVIDG-ETCLLDILDT-AGQ------EEYSAMRDQ 71 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC------CCCCCTTCCEEEEEEEEETT-EEEEEEEEEC-CCC---------CTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC------CCCCCCCchheEEEEEEECC-cEEEEEEEEC-CCc------HHHHHHHHH
Confidence 478999999999999999985321 11111221111111111111 1111245777 332 111112222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.+. ..|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+.... .+......+..+ .
T Consensus 72 ~~~---~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~--~- 140 (189)
T 4dsu_A 72 YMR---TGEGFLCVFA-INNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVD---TKQAQDLARSYG--I- 140 (189)
T ss_dssp HHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSC---HHHHHHHHHHHT--C-
T ss_pred HHh---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccC---HHHHHHHHHHcC--C-
Confidence 222 3555555222 3344332221111111111100 112458999999999865422 233333333332 1
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++..++..
T Consensus 141 ------------~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 141 ------------PFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp ------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred ------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 3678999999999999888753
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.20 E-value=2.4e-11 Score=94.18 Aligned_cols=158 Identities=20% Similarity=0.155 Sum_probs=76.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+|+++..... .....++.......+...+.. ....++|+ +|. ..+......
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~G~------~~~~~~~~~ 70 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFI------EKYDPTIEDFYRKEIEVDSSP-SVLEILDT-AGT------EQFASMRDL 70 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC------SCCCTTCCEEEEEEEEETTEE-EEEEEEEC-CCT------TCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCc------ccCCCCcceeEEEEEEECCEE-EEEEEEEC-CCc------hhhHHHHHH
Confidence 5789999999999999999853210 000011000000111111111 11246777 331 122222333
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.+. ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+..+. ..+...+..+..+ .
T Consensus 71 ~~~---~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~- 140 (167)
T 1kao_A 71 YIK---NGQGFILVYS-LVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--C- 140 (167)
T ss_dssp HHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--S-
T ss_pred Hhc---cCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--C-
Confidence 332 3466555222 3344332221111111111100 012458999999999765432 2233333333321 1
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++.+++..
T Consensus 141 ------------~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 141 ------------PFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp ------------CEEEECTTCHHHHHHHHHHHHH
T ss_pred ------------CEEEecCCCCcCHHHHHHHHHH
Confidence 4678999999999999988754
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.20 E-value=3.8e-11 Score=96.87 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=79.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+|+....... .....|. ......+....... -..++|+ +|. ..+.....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~~ 75 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPA---FVSTVGI--DFKVKTIYRNDKRI-KLQIWDT-AGL------ERYRTITT 75 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSC---CCCCCSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCccce--eEEEEEEEECCeEE-EEEEEEC-CCc------hhhcchHH
Confidence 4578999999999999999995421000 0011111 11101111111111 1246777 332 12222222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ....|.+++-.+ +.++..+.........+.... ....+.++|+||+|+.+.... ..+...+..+..+ .
T Consensus 76 ~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 145 (203)
T 1zbd_A 76 AY---YRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--F 145 (203)
T ss_dssp TT---GGGCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--C
T ss_pred Hh---hcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--C
Confidence 11 245777777333 334433322111111121111 112458999999999875432 2334444433332 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
+++.+||++|.|++++..++.
T Consensus 146 -------------~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 146 -------------EFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp -------------EEEECBTTTTBSSHHHHHHHH
T ss_pred -------------eEEEEECCCCCCHHHHHHHHH
Confidence 467899999999998888775
No 54
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=6.1e-11 Score=94.31 Aligned_cols=162 Identities=21% Similarity=0.214 Sum_probs=84.5
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
++...++++|.+|||||||+|+|+. .+. ...+.++.+.......+... +.. ..++|+ +|..-.. .....+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~----~~~-~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~~~~~-~~~~~~ 74 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG----ENV-YIGNWPGVTVEKKEGEFEYN--GEK-FKVVDL-PGVYSLT-ANSIDE 74 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT----TCE-EEEECTTSCCEEEEEEEEET--TEE-EEEEEC-CCCSCCS-SSSHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC----CCc-cccCCCCeeccceEEEEEeC--CcE-EEEEEC-CCcCccc-cccHHH
Confidence 3456789999999999999999994 332 33444554333322222221 111 246777 4421111 011112
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.+.........+|.+++ +.|.............+... . .+.++|+||+|+.+........+.+.+.+ +
T Consensus 75 ~~~~~~~~~~~~~~~i~----v~d~~~~~~~~~~~~~~~~~-~----~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~ 142 (188)
T 2wjg_A 75 IIARDYIINEKPDLVVN----IVDATALERNLYLTLQLMEM-G----ANLLLALNKMDLAKSLGIEIDVDKLEKIL---G 142 (188)
T ss_dssp HHHHHHHHHHCCSEEEE----EEEGGGHHHHHHHHHHHHTT-T----CCEEEEEECHHHHHHTTCCCCHHHHHHHH---T
T ss_pred HHHHHHHhccCCCEEEE----EecchhHHHHHHHHHHHHhc-C----CCEEEEEEhhhccccccchHHHHHHHHHh---C
Confidence 22222212235777776 44444322211111111111 1 44889999999865432212233333322 1
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. .++.+||++|.|++++.+++...
T Consensus 143 --~-------------~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 143 --V-------------KVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp --S-------------CEEECBGGGTBSHHHHHHHHHHH
T ss_pred --C-------------CeEEEEecCCCCHHHHHHHHHHH
Confidence 1 46789999999999999887653
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=4.6e-11 Score=95.75 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=81.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+++...... ......|.+.. ...+....... -..++|+ +|. ..+.....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~ 90 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDH---NISPTIGASFM--TKTVPCGNELH-KFLIWDT-AGQ------ERFHSLAP 90 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCT---TCCCCSSEEEE--EEEEECSSSEE-EEEEEEE-CCS------GGGGGGTH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCC---CcCCCcceeEE--EEEEEeCCEEE-EEEEEcC-CCc------hhhHhhhH
Confidence 358899999999999999998542110 01111221111 11111111111 1246777 331 11112222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+++++..+..+ .
T Consensus 91 ~~~---~~~d~iilV~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~ 160 (192)
T 2fg5_A 91 MYY---RGSAAAVIVYD-ITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--A 160 (192)
T ss_dssp HHH---TTCSEEEEEEE-TTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--C
T ss_pred Hhh---ccCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence 222 35677777333 344443322111111111111 112458999999999754321 2344555444322 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+++.+||++|.|++++..++...
T Consensus 161 -------------~~~~~Sa~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 161 -------------IVVETSAKNAINIEELFQGISRQ 183 (192)
T ss_dssp -------------EEEECBTTTTBSHHHHHHHHHHT
T ss_pred -------------EEEEEeCCCCcCHHHHHHHHHHH
Confidence 46889999999999999988653
No 56
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.20 E-value=7e-12 Score=97.02 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=74.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~~l 111 (263)
+-++++|.+|+|||||+|+++.. +.......++++.......+... +.. ..++|+ +|.... .....+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~Dt-~G~~~~~~~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETD--RGR-FLLVDT-GGLWSGDKWEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC----CC-----------CCEEEEEEET--TEE-EEEEEC-GGGCSSSSCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecceEEEEEeC--Cce-EEEEEC-CCCCCccchHHHHHHHH
Confidence 56899999999999999999943 22333333443222221111111 111 246776 332110 0011122222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ....|.+++-.+........... ....+.. .. ++.++|+||+|+.+..+ ...++ .
T Consensus 74 ~~~---~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~-~~----~p~ilv~nK~Dl~~~~~---~~~~~---~------ 131 (161)
T 2dyk_A 74 DRA---LEDAEVVLFAVDGRAELTQADYE--VAEYLRR-KG----KPVILVATKVDDPKHEL---YLGPL---Y------ 131 (161)
T ss_dssp HHH---TTTCSEEEEEEESSSCCCHHHHH--HHHHHHH-HT----CCEEEEEECCCSGGGGG---GCGGG---G------
T ss_pred HHH---HHhCCEEEEEEECCCcccHhHHH--HHHHHHh-cC----CCEEEEEECcccccchH---hHHHH---H------
Confidence 222 24677777733322211111111 1111111 11 44899999999976521 01111 0
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+...++.+||++|.|++++.+++.+
T Consensus 132 ---------~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 132 ---------GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp ---------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ---------hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 112335789999999999999988754
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.20 E-value=3.3e-11 Score=98.30 Aligned_cols=166 Identities=16% Similarity=0.078 Sum_probs=80.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCC-eEEEEecCCCc-ccccchhhhhcC-CC-CcceeeeeeecCcceEeecchhHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGK-RIAVILNEFGE-EIGVERAMINEG-EG-GALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~-~~~ii~~~~g~-t~~~d~~~~~~~-~~-~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
.-|+|+|.+|+|||||+|+|+...... ....+..++.. .+.++....... .. ...-..++|++ |. ..+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~-G~------~~~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA-GQ------ERFR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEE-SH------HHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECC-Cc------HhHH
Confidence 358899999999999999999642111 11111111110 001110000000 00 01112466763 31 2222
Q ss_pred HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
......+ ...|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+.... ..+...+..+..
T Consensus 99 ~~~~~~~---~~~d~iilV~D-~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~ 171 (217)
T 2f7s_A 99 SLTTAFF---RDAMGFLLMFD-LTSQQSFLNVRNWMSQLQANAY-CENPDIVLIGNKADLPDQREV--NERQARELADKY 171 (217)
T ss_dssp HHHHHHH---TTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCCCT-TTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHT
T ss_pred hHHHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-cCCCCEEEEEECCcccccccc--CHHHHHHHHHHC
Confidence 2222222 46788777332 3334333222111111211110 012568999999999764322 223444443332
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ . +++.+||++|.|++++..++..
T Consensus 172 ~--~-------------~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 172 G--I-------------PYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp T--C-------------CEEEEBTTTTBTHHHHHHHHHH
T ss_pred C--C-------------cEEEEECCCCCCHHHHHHHHHH
Confidence 2 1 4678999999999999888763
No 58
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=98.49 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=80.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-|+|+|.+|+|||||+|+++..... .....|.+.+. ..+...+... -..++|+ +|. ..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~ 94 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFS-------ERQGSTIGVDFTMKTLEIQGKRV-KLQIWDT-AGQ------ERFRTI 94 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-----------------CEEEEEEEETTEEE-EEEEECC-TTC------GGGHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC-------CCCCCCcceEEEEEEEEECCEEE-EEEEEEC-CCc------HhHHHH
Confidence 46889999999999999999853210 01111122211 1111111011 1246777 332 222222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
....+ ...|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+.... ..+++++..+..+
T Consensus 95 ~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~- 165 (201)
T 2hup_A 95 TQSYY---RSANGAILAYD-ITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREV--SLAEAQSLAEHYD- 165 (201)
T ss_dssp HHHHH---TTCSEEEEEEE-TTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT-
T ss_pred HHHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCcccccccc--CHHHHHHHHHHcC-
Confidence 22332 36788777333 334433322111011111111 112458899999999764322 2344444444331
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...++.+||++|.|++++..++..
T Consensus 166 -------------~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 166 -------------ILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp -------------CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred -------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 225688999999999999988764
No 59
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.18 E-value=1.5e-11 Score=96.77 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=79.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|+|||||+|+++...... ...+. .+.+. ..+...+... -..++|+ +|. ..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~ 79 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDN-----TYQAT--IGIDFLSKTMYLEDRTV-RLQLWDT-AGQ------ERFRSL 79 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-----SCCCC--CSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCc--eeeEEEEEEEEECCeEE-EEEEEEC-CCc------HHHHHH
Confidence 468899999999999999998532110 00111 11111 1111111111 1246777 331 112222
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
....+ ...|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+..+. ..+......+..+
T Consensus 80 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 150 (179)
T 2y8e_A 80 IPSYI---RDSTVAVVVYD-ITNTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELN- 150 (179)
T ss_dssp SHHHH---HTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHT-
T ss_pred HHHHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcC-
Confidence 22332 25677777332 333333221110001111110 112458999999999865432 2334444444332
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++.+++.+
T Consensus 151 -~-------------~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 151 -V-------------MFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp -C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred -C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999988765
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.18 E-value=1e-11 Score=96.78 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=78.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+|+++....... .....+. ......+....... -..++|+ +|. ..+.....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~-~G~------~~~~~~~~ 73 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEF---QESTIGA--AFLTQTVCLDDTTV-KFEIWDT-AGQ------ERYHSLAP 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCccce--EEEEEEEEECCEEE-EEEEEeC-CCc------HHhhhhhH
Confidence 3578999999999999999985321000 0011111 01000111111111 1246777 432 11112222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++-.+ +.++..+.........+.... ...++.++|.||+|+.+.... ..++..+..+..+ .
T Consensus 74 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 143 (170)
T 1r2q_A 74 MYY---RGAQAAIVVYD-ITNEESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAV--DFQEAQSYADDNS--L 143 (170)
T ss_dssp HHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred Hhc---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCcccccc--CHHHHHHHHHHcC--C
Confidence 222 35777777333 334433322111001111110 112457888899999764322 2334444333321 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++.+++..
T Consensus 144 -------------~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 144 -------------LFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp -------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred -------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999988765
No 61
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=98.05 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=78.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+|+....... .....|. ......+....... -..++|+ +|. .... ....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~--~~~~----~~~~ 92 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHD---SRTTIGV--EFSTRTVMLGTAAV-KAQIWDT-AGL--ERYR----AITS 92 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSS---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-SCC--CTTC----TTHH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccce--eEEEEEEEECCEEE-EEEEEeC-CCc--hhhh----hhhH
Confidence 4688999999999999999985421100 0000111 01000111111111 1246777 442 1111 1222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+.... ..+..+...+.. .+
T Consensus 93 ~~~---~~~d~vi~v~D-~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~ 162 (193)
T 2oil_A 93 AYY---RGAVGALLVFD-LTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREV--PTEEARMFAENN--GL 162 (193)
T ss_dssp HHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHT--TC
T ss_pred HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccccccc--CHHHHHHHHHHc--CC
Confidence 222 35677777332 333433221110001111111 112458999999999765322 233444443332 11
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 163 -------------~~~~~Sa~~~~gi~~l~~~l~~ 184 (193)
T 2oil_A 163 -------------LFLETSALDSTNVELAFETVLK 184 (193)
T ss_dssp -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999887753
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.18 E-value=8.8e-11 Score=91.19 Aligned_cols=158 Identities=14% Similarity=0.071 Sum_probs=77.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|.+|||||||+|+++..... .....+ ..... ..+....... -..++|+ +|. .... ....
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~D~-~G~--~~~~----~~~~ 69 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIFV------EKYDPT-IEDSYRKQVEVDCQQC-MLEILDT-AGT--EQFT----AMRD 69 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCC------CSCCCC-SEEEEEEEEESSSCEE-EEEEEEE-CSS--CSST----THHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------CCCCCC-ccceEEEEEEECCEEE-EEEEEEC-CCh--HHHH----HHHH
Confidence 4789999999999999999853210 000111 11110 0011111111 1246777 442 1111 1222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.... ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+.... ..+...+..+.. +.
T Consensus 70 ~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~-~~- 140 (167)
T 1c1y_A 70 LYMK---NGQGFALVYS-ITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVV--GKEQGQNLARQW-CN- 140 (167)
T ss_dssp HHHH---HCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHT-TS-
T ss_pred HHhc---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccC--CHHHHHHHHHHc-cC-
Confidence 2322 3566655222 3344332211110111111101 112458999999999765422 234444443332 12
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++..++.+
T Consensus 141 ------------~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 141 ------------CAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp ------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred ------------CcEEEecCCCCCCHHHHHHHHHH
Confidence 24788999999999999988754
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.18 E-value=4.9e-11 Score=95.29 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=37.9
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|+||+|+.+.. ..+++++.++.. +...++.+||++|.|++++..++..
T Consensus 136 ~piilv~NK~Dl~~~~----~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 136 VPIVIQVNKRDLPDAL----PVEMVRAVVDPE--------------GKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp SCEEEEEECTTSTTCC----CHHHHHHHHCTT--------------CCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred CCEEEEEEchhccccc----CHHHHHHHHHhc--------------CCceEEEEecCCCcCHHHHHHHHHH
Confidence 4589999999997753 234555544332 2225788999999999999988764
No 64
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.17 E-value=2.2e-11 Score=97.76 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=82.2
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...+-|+|+|.+|||||||+++++. .+...+...+ |.+.....+.. .... ..++|+ +|. ..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~----~~~~~~~~~~--t~~~~~~~~~~--~~~~-~~i~Dt-~G~------~~~~~ 78 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP----AQSSSKHITA--TVGYNVETFEK--GRVA-FTVFDM-GGA------KKFRG 78 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC----CC----CCCC--CSSEEEEEEEE--TTEE-EEEEEE-CCS------GGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc----CCCccccccc--ccceeEEEEEe--CCEE-EEEEEC-CCC------HhHHH
Confidence 3455789999999999999999994 3333221111 12222222221 1111 256777 442 11111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeC------eEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLD------SIITDVVILNKVDLVSPERSGDSLDELE 182 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~------~~i~~iivlNK~Dl~~~~~~~~~~~~~~ 182 (263)
..... ....|.+++-.+ +.++..+... .++...+... ... ..++.++|+||+|+.+... .+++.
T Consensus 79 ~~~~~---~~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~ 149 (199)
T 4bas_A 79 LWETY---YDNIDAVIFVVD-SSDHLRLCVVKSEIQAMLKHE-DIRRELPGGGRVPFLFFANKMDAAGAKT----AAELV 149 (199)
T ss_dssp GGGGG---CTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTSH-HHHSBCTTSCBCCEEEEEECTTSTTCCC----HHHHH
T ss_pred HHHHH---HhcCCEEEEEEE-CCcHHHHHHHHHHHHHHHhCh-hhhhcccccCCCCEEEEEECcCCCCCCC----HHHHH
Confidence 11111 246788777333 3344333221 1111111110 000 1255899999999987642 34444
Q ss_pred HHHHhhc--CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 183 KEIHEIN--SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 183 ~~l~~~~--p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.+.... .. ....++.+||++|.|++++.+++..
T Consensus 150 ~~~~~~~~~~~-----------~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 150 EILDLTTLMGD-----------HPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHTHHHHHTT-----------SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhcchhhccC-----------CeeEEEEeeCCCccCHHHHHHHHHH
Confidence 4432110 00 0124788999999999999988764
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.17 E-value=5.8e-12 Score=98.08 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=77.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|||||||+|+++.... ......|.+.+.. .+...+... -..++|+ +|. ..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~ 71 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF-------TKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT-AGQ------EEFDAIT 71 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-------CCCSSCCCSSSEEEEEEEETTEEE-EEEEECC-TTG------GGTTCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-------CCCCCCceEEEEEEEEEEECCEEE-EEEEEcC-CCc------HhHHHHH
Confidence 578999999999999999985321 1111111221111 111111011 1245666 331 1111111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ...|.+++-.+ +.++..+.........+.... ...+.++|+||+|+.+..+. ..+..++..+..+
T Consensus 72 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 140 (168)
T 1z2a_A 72 KAYY---RGAQACVLVFS-TTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK-- 140 (168)
T ss_dssp HHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--
T ss_pred HHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--
Confidence 2222 35677776332 233332221111011111111 11458999999999864322 2344444444332
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++.+
T Consensus 141 ~-------------~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 141 L-------------RFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp C-------------EEEECBTTTTBSSHHHHHHHHH
T ss_pred C-------------eEEEEecCCCCCHHHHHHHHHH
Confidence 1 4678999999999999988754
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.17 E-value=3.1e-11 Score=96.73 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=36.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.++|+||+| ....+ ...+++.+.++..+ . .++.+||++|.|++++..++..
T Consensus 148 ~piilv~NK~D-~~~~~--~~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 148 YIIILVANKID-KNKFQ--VDILEVQKYAQDNN--L-------------LFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp CEEEEEEECTT-CC-CC--SCHHHHHHHHHHTT--C-------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred CcEEEEEECCC-ccccc--CCHHHHHHHHHHcC--C-------------cEEEEecCCCCCHHHHHHHHHH
Confidence 55899999999 33221 23456666555432 1 4688999999999999988754
No 67
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.17 E-value=2.8e-11 Score=95.55 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=80.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|+|||||+|+++...... ...+ +.+.+. ..+....... -..++|+ +|. ..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~ 77 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVE-----FQES--TIGAAFFSQTLAVNDATV-KFEIWDT-AGQ------ERYHSL 77 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTT-----TSCC--CSCCSEEEEEEEETTEEE-EEEEEEC-CCS------GGGGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC-----cCCC--CceeEEEEEEEEECCEEE-EEEEEeC-CCC------hhhhhh
Confidence 358899999999999999998542110 0000 011111 0111111011 1246777 331 111112
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
....+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+.+++..+..+
T Consensus 78 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~- 148 (181)
T 2efe_B 78 APMYY---RGAAAAIIVFD-VTNQASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG- 148 (181)
T ss_dssp THHHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred hHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC-
Confidence 22222 35677777333 334433222111111111110 012458999999999765432 2344444443321
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. .++.+||++|.|++++..++...
T Consensus 149 -~-------------~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 149 -L-------------FFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp -C-------------EEEECCSSSCTTHHHHHHHHHHT
T ss_pred -C-------------EEEEEECCCCCCHHHHHHHHHHH
Confidence 1 36789999999999999888653
No 68
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.16 E-value=6.1e-11 Score=100.84 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=27.0
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
++.++|+||+|+++.. .+..+.+.+++..... + -.++.+||.+++|++++..++.+..
T Consensus 145 ~pvi~V~nK~D~~~~~----e~~~~~~~i~~~l~~~----------~-i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 145 VNIIPLIAKADTLTPE----ECQQFKKQIMKEIQEH----------K-IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp SCEEEEESSGGGSCHH----HHHHHHHHHHHHHHHT----------T-CCCCCC-----------CHHHHHTC
T ss_pred CCEEEEEeccCCCCHH----HHHHHHHHHHHHHHHc----------C-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 4589999999998764 2333333333221100 0 1367889999999999988887543
No 69
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=2.4e-11 Score=97.22 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=78.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+|+|.+|+|||||+|+++........ ....|.+.. ...+........ ..++|+ +|. ..+......
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~--~~~~~~~~~~~~-~~i~Dt-~G~------~~~~~~~~~ 91 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTFTPAF---VSTVGIDFK--VKTVYRHEKRVK-LQIWDT-AGQ------ERYRTITTA 91 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCCCE---EEEETTTEE--EEEEEETTTTEE-EEEECH-HHH------HHCHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCccc---CCCeeeEEE--EEEEEECCEEEE-EEEEeC-CCh------HHHHHHHHH
Confidence 5789999999999999999864311111 011121111 111111111111 245666 331 122222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+.... ..+......+..+ +
T Consensus 92 ~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~- 160 (191)
T 3dz8_A 92 YY---RGAMGFILMYD-ITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLG--F- 160 (191)
T ss_dssp HH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-
T ss_pred HH---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--C-
Confidence 22 36787777332 334433321111111111110 012458999999999765322 2233333333332 1
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 161 ------------~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 161 ------------DFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp ------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred ------------eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887754
No 70
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.16 E-value=1.4e-11 Score=96.05 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=78.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
--++++|.+|+|||||+|+++....... ..+..|.+.. ...+....... -..++|+ +|. ..+.....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~~~ 73 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPN---INPTIGASFM--TKTVQYQNELH-KFLIWDT-AGL------ERFRALAP 73 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT---CCCCCSEEEE--EEEEEETTEEE-EEEEEEE-CCS------GGGGGGTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCceeEEEE--EEEEEECCeEE-EEEEEcC-CCc------hhhhcccH
Confidence 3578999999999999999986421100 0111121111 00111111111 1246777 342 11112222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++-.+ +.++............+... . ...++.++|.||+|+.+..+. ..+......+..+
T Consensus 74 ~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~l~~~-~-~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 74 MYY---RGSAAAIIVYD-ITKEETFSTLKNWVRELRQH-G-PPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--- 142 (170)
T ss_dssp HHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHH-S-CTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT---
T ss_pred hhC---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC---
Confidence 222 35677766332 33343322211111111111 0 112457889999999865432 1233333333221
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+||++|.|++++..++..
T Consensus 143 ------------~~~~~~Sa~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 143 ------------AIFVETSAKNAININELFIEISR 165 (170)
T ss_dssp ------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred ------------CEEEEEeCCCCcCHHHHHHHHHH
Confidence 14678999999999999988764
No 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=97.40 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=75.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+++.. +... ...+..+.......+...+... -..++|+ +|. ..+.....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~----~~~~-~~~~t~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~~ 92 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN----KFKQ-DSNHTIGVEFGSRVVNVGGKTV-KLQIWDT-AGQ------ERFRSVTR 92 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-----------------CCEEEEEEEETTEEE-EEEEECC-TTH------HHHSCCCH
T ss_pred eEEEEECcCCCCHHHHHHHHHhC----CCCc-cCCCcccceeEEEEEEECCeee-EEEEEcC-CCc------HhHHHHHH
Confidence 35889999999999999999843 2111 1111100111111111111011 1245666 331 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+..... .-++.++|+||+|+.+.... ...+..+..+..+ .
T Consensus 93 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~ 162 (200)
T 2o52_A 93 SYY---RGAAGALLVYD-ITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREV--TFLEASRFAQENE--L 162 (200)
T ss_dssp HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred HHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccc--CHHHHHHHHHHcC--C
Confidence 121 35777777332 3334332211100011111100 12458999999999764322 2233333333321 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 163 -------------~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 163 -------------MFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999888754
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.15 E-value=8.4e-11 Score=94.91 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=79.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|||||||++++. +.++....+. .+.....+... +.. ..++|+ +|.- ..+. ...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~----~~~~~~~~~t----~~~~~~~~~~~--~~~-l~i~Dt-~G~~--~~~~----~~~ 87 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK----DDRLGQHVPT----LHPTSEELTIA--GMT-FTTFDL-GGHI--QARR----VWK 87 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS----CC------CC----CCCSCEEEEET--TEE-EEEEEE-CC------CC----GGG
T ss_pred cEEEEECCCCCCHHHHHHHHh----cCCCCccCCC----CCceeEEEEEC--CEE-EEEEEC-CCcH--hhHH----HHH
Confidence 357899999999999999998 3333222222 22222222221 111 246777 4421 1110 001
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.. ...+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|.||+|+.+.. ..+++++.++.....
T Consensus 88 ~~---~~~~d~~i~v~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 88 NY---LPAINGIVFLVD-CADHERLLESKEELDSLMTDE-TI-ANVPILILGNKIDRPEAI----SEERLREMFGLYGQT 157 (198)
T ss_dssp GG---GGGCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTSCEEEEEECTTSTTCC----CHHHHHHHHTCTTTC
T ss_pred HH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCc-cc-CCCcEEEEEECCCccccC----CHHHHHHHhCccccc
Confidence 11 135677777333 34443332211 111111110 00 114589999999997632 245555555432100
Q ss_pred CeEEEeecC-------CCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRC-------QVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~-------~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+ ......++.+||++|+|++++.+++..
T Consensus 158 -----~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 158 -----TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp -----CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred -----ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 0000 011235788999999999999988754
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.15 E-value=1.4e-10 Score=89.86 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=79.1
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~ 114 (263)
++++|.+|+|||||+|+++..... ...+ |.+.....+... ... ..++|+ +|. ..+.......
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~------~~~~--t~~~~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~~~ 64 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIV------TTIP--TIGFNVETVEYK--NIS-FTVWDV-GGQ------DKIRPLWRHY 64 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSS------CCCC--CSSCCEEEEECS--SCE-EEEEEC-CCC------GGGHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCcC------cccC--cCceeEEEEEEC--CEE-EEEEEc-CCC------hhhHHHHHHH
Confidence 689999999999999999853210 1111 122221112111 111 256777 442 1222222222
Q ss_pred HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
...+|.+++-.+ +.++..+.... ++...+... .. .-.+.++|+||+|+.+.. ..+.+.+.+.... +.
T Consensus 65 ---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~--~~ 132 (164)
T 1r8s_A 65 ---FQNTQGLIFVVD-SNDRERVNEAREELMRMLAED-EL-RDAVLLVFANKQDLPNAM----NAAEITDKLGLHS--LR 132 (164)
T ss_dssp ---TTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGG--CS
T ss_pred ---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-cCCeEEEEEECcCCcCCC----CHHHHHHHhCccc--cc
Confidence 246788777333 34443332211 111111110 01 114589999999997753 2234444332110 00
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
... -+++.+||++|.|++++.+++..
T Consensus 133 -------~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 133 -------HRN-WYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp -------SCC-EEEEECBTTTTBTHHHHHHHHHH
T ss_pred -------Ccc-EEEEEcccCCCcCHHHHHHHHHH
Confidence 001 14788999999999999988764
No 74
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.15 E-value=2.6e-10 Score=102.22 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=82.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc--------cchhh--hhcCC-C-CcceeeeeeecCcceE
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG--------VERAM--INEGE-G-GALVEEWVELANGCIC 100 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~--------~d~~~--~~~~~-~-~~~~~~~~~l~~g~~~ 100 (263)
..++++|.+|+|||||+|+|+........+......+.+.. .+... ..... . ...-..++|+ +|-
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt-PGh-- 85 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA-PGH-- 85 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC-CCC--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC-CCc--
Confidence 46889999999999999999964322222222222111000 00000 00000 0 0011246777 441
Q ss_pred eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744 101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE 180 (263)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~ 180 (263)
.++...+...+ ..+|.+++-.+.. ++....+.......+ .... ..+.++|+||+|+.+.++.....++
T Consensus 86 ----~~~~~~~~~~~---~~~D~~ilVvda~-~~~~~~qt~~~~~~~-~~~~---~~~iivviNK~Dl~~~~~~~~~~~~ 153 (403)
T 3sjy_A 86 ----EVLMATMLSGA---ALMDGAILVVAAN-EPFPQPQTREHFVAL-GIIG---VKNLIIVQNKVDVVSKEEALSQYRQ 153 (403)
T ss_dssp ----GGGHHHHHHHH---TTCSEEEEEEETT-SCSSCHHHHHHHHHH-HHHT---CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH---hhCCEEEEEEECC-CCCCcHHHHHHHHHH-HHcC---CCCEEEEEECccccchHHHHHHHHH
Confidence 33333333333 4678777733322 211111110000001 1111 1247899999999876421112222
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.+.++.... ...+++++||++|.|+++|.+++...
T Consensus 154 i~~~l~~~~~------------~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 154 IKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhhCC------------CCCEEEEEECCCCcChHHHHHHHHHh
Confidence 3332222111 22358899999999999999988763
No 75
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.15 E-value=2e-11 Score=96.87 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=80.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+|+++. .+........|. ....+... +.. ..++|+ +|. ..+.....
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~t~~~----~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~ 83 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTIGS----NVEEIVIN--NTR-FLMWDI-GGQ------ESLRSSWN 83 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT----TSCEEEECCSSS----SCEEEEET--TEE-EEEEEE-SSS------GGGTCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhc----CCCCccCCcCce----eeEEEEEC--CEE-EEEEEC-CCC------HhHHHHHH
Confidence 4688999999999999999994 333333333332 11111111 111 256777 342 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.. ....|.+++-.+ +.++..+.... ++...+... . ..-++.++|+||+|+.+.. ..+++.+.+....-.
T Consensus 84 ~~---~~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~-~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~ 153 (181)
T 2h17_A 84 TY---YTNTEFVIVVVD-STDRERISVTREELYKMLAHE-D-LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIK 153 (181)
T ss_dssp GG---GTTCCEEEEEEE-TTCTTTHHHHHHHHHHHHTCG-G-GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC
T ss_pred HH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-h-hCCCeEEEEEECCCcccCC----CHHHHHHHhCccccc
Confidence 11 146787777333 33332222211 111111110 0 0114589999999998753 234444443211000
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
... -.++.+||++|.|++++.+++..
T Consensus 154 ---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 ---------DHQ-WHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp ---------SSC-EEEEECBTTTTBTHHHHHHHHHT
T ss_pred ---------CCc-eEEEEccCCCCcCHHHHHHHHHh
Confidence 001 15788999999999999988753
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.14 E-value=2.9e-11 Score=97.61 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=53.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCC-cceeeeeeecCcceEeecchhHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGG-ALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
.-|+++|.+|+|||||+|+++.. +.........+ .+.+.. .+...+.. .....++|+ +|. ..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~----~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~------~~--- 85 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK----GSKFLKDYAMT-SGVEVVVAPVTIPDTTVSVELFLLDT-AGS------DL--- 85 (208)
T ss_dssp EEEEEC---------------------------------------CEEEECTTSSEEEEEEEEET-TTT------HH---
T ss_pred eEEEEECCCCCCHHHHHHHHHhC----CCcccCCCCCc-cceEEEEEEEEECCcccEEEEEEEEC-CCc------HH---
Confidence 46889999999999999999843 11122222222 322211 11111110 111246776 332 11
Q ss_pred HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceee-CeEEeeEEEEecCCCCC-CCCCcchHHHHHHHHH
Q 024744 110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRL-DSIITDVVILNKVDLVS-PERSGDSLDELEKEIH 186 (263)
Q Consensus 110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~-~~~~~~~~~~~~~~l~ 186 (263)
...+... ....|.+++-.+ +.++..+.........+...... ..-++.++|+||+|+.+ .... ..++..+..+
T Consensus 86 -~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~ 161 (208)
T 2yc2_C 86 -YKEQISQYWNGVYYAILVFD-VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWAT 161 (208)
T ss_dssp -HHHHHSTTCCCCCEEEEEEE-TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHH
T ss_pred -HHHHHHHHHhhCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHH
Confidence 2222211 246788777333 34444332211111111111000 01256899999999987 3322 2344555554
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCC-cchhhhhhhhhhh
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYD-ATHVTRLEGLLEE 227 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~-g~~~~~l~~~l~~ 227 (263)
..+ . .++.+||++ |.|++++..++..
T Consensus 162 ~~~--~-------------~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 162 TNT--L-------------DFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp HTT--C-------------EEEECCC-------CHHHHHHHH
T ss_pred HcC--C-------------EEEEeccCCCCcCHHHHHHHHHH
Confidence 432 1 467899999 9999999888754
No 77
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.14 E-value=1.8e-11 Score=98.23 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=81.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..-++++|.+|+|||||+|+++.... ......+ ...... .+...+.. ....++|+ +|. ..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~------~~~~~~ 87 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI------PTAYVPT-VFENFSHVMKYKNEE-FILHLWDT-AGQ------EEYDRL 87 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC------CSSCCCC-SEEEEEEEEEETTEE-EEEEEEEE-CCS------GGGTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC------CCccCCe-eeeeeEEEEEECCEE-EEEEEEEC-CCc------HHHHHH
Confidence 34688999999999999999985421 0111111 111110 01111111 11246777 331 111111
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
... .....|.+++-.+ +.++..+... ......+.... .-++.++|+||+|+.+........+...+..+..+
T Consensus 88 ~~~---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (194)
T 3reg_A 88 RPL---SYADSDVVLLCFA-VNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG 160 (194)
T ss_dssp GGG---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT
T ss_pred hHh---hccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC
Confidence 111 1136788777332 4444443332 11111121111 11458999999999864221223444555444432
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
...++.+||++|.|++++..++...
T Consensus 161 --------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 161 --------------CVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp --------------CSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --------------CCEEEEeecCCCCCHHHHHHHHHHH
Confidence 1236789999999999999887653
No 78
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.14 E-value=5.1e-11 Score=92.72 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=77.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+|+++....... ..+..|. ......+...+... -..++|+ +|. ..+......
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~-~G~------~~~~~~~~~ 71 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAEN---KEPTIGA--AFLTQRVTINEHTV-KFEIWDT-AGQ------ERFASLAPX 71 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC---CCCccce--eEEEEEEEECCEEE-EEEEEEC-CCC------hhhhhhhhh
Confidence 478999999999999999985421100 0011111 11101111111111 1246777 331 112222222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC-cchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS-GDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~-~~~~~~~~~~l~~~~p~~ 192 (263)
.+ ...|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+.... ....+...+..+..+ .
T Consensus 72 ~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~ 143 (170)
T 1ek0_A 72 YY---RNAQAALVVYD-VTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG--L 143 (170)
T ss_dssp HH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--C
T ss_pred hh---ccCcEEEEEEe-cCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--C
Confidence 22 35677777332 334433322111011111111 112458899999999765211 011222223222221 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 144 -------------~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 144 -------------LFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp -------------EEEECCTTTCTTHHHHHHHHHT
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 4688999999999999988754
No 79
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.14 E-value=4.8e-11 Score=109.76 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=82.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++|+|.+|+|||||+|+|+... .. ...+ |++.....+... +.. ..++|++ |. ..+......
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~----~~--~~~~--T~~~~~~~~~~~--~~~-~~l~Dt~-G~------~~~~~~~~~ 385 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ----SV--TTIP--TVGFNVETVTYK--NVK-FNVWDVG-GQ------DKIRPLWRH 385 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CC--CCCC--CSSEEEEEEESS--SCE-EEEEEEC-CC------GGGSGGGGG
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC----CC--CcCC--ccceeEEEEEeC--CEE-EEEEECC-Cc------HHHHHHHHH
Confidence 57899999999999999999532 11 1111 244433333322 222 2578884 41 111111111
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.....|.+++-.+ +.++..+.... ++...+... .. .-+|.+||+||+|+.+.. ..+.+.+.+.... +
T Consensus 386 ---~~~~ad~~i~V~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~--~ 453 (497)
T 3lvq_E 386 ---YYTGTQGLIFVVD-CADRDRIDEARQELHRIINDR-EM-RDAIILIFANKQDLPDAM----KPHEIQEKLGLTR--I 453 (497)
T ss_dssp ---GGTTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTSG-GG-TTCEEEEEEECCSSSSCC----CHHHHHHHTTCTT--C
T ss_pred ---HhccCCEEEEEEE-CcchhHHHHHHHHHHHHhhhh-hc-CCCcEEEEEECCCCCcCC----CHHHHHHHhchhh--h
Confidence 1246788777332 34444332211 111111110 11 125689999999998754 2344444332111 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
......++.+||++|+|++++.++|..
T Consensus 454 --------~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 454 --------RDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp --------CSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred --------hcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 001225788999999999999998864
No 80
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.14 E-value=2e-10 Score=91.26 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=80.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-----chhHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-----KHSLV 108 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-----~~~~~ 108 (263)
-++++|.+|||||||+|+++.. +. ...+.+|.+.... ..... -..++|+ +|...... .+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~----~~-~~~~~~~~t~~~~--~~~~~-----~~~l~Dt-~G~~~~~~~~~~~~~~~~ 69 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK----KV-RRGKRPGVTRKII--EIEWK-----NHKIIDM-PGFGFMMGLPKEVQERIK 69 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC----CC-SSSSSTTCTTSCE--EEEET-----TEEEEEC-CCBSCCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCc----CC-ccCCCCCccceeE--EEecC-----CEEEEEC-CCccccccCCHHHHHHHH
Confidence 4789999999999999999953 21 1122333322211 11111 1246777 44211100 12233
Q ss_pred HHHHHHHHh-ccCCcEEEEcccCCCCchhHHHH--hhccc-------ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744 109 QALEQLVQR-KERLDHILLETTGLANPAPLASV--LWLDD-------QLESAVRLDSIITDVVILNKVDLVSPERSGDSL 178 (263)
Q Consensus 109 ~~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~--~~~~~-------~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~ 178 (263)
......... ...+++++. +.++...... .+... .+...... .-+|.++|+||+|+.+.. .
T Consensus 70 ~~~~~~~~~~~~~~~~v~~----v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~-----~ 139 (190)
T 2cxx_A 70 DEIVHFIEDNAKNIDVAVL----VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNV-----Q 139 (190)
T ss_dssp HHHHHHHHHHGGGCCEEEE----EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCH-----H
T ss_pred HHHHHHHHhhhccCCEEEE----EEcchhhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcH-----H
Confidence 333334332 345667666 4444433211 01000 00010000 114589999999998752 1
Q ss_pred HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+...+..+.++-.. .. ....++.+||++|.|++++..++..
T Consensus 140 ~~~~~~~~~~~~~~-------~~-~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 140 EVINFLAEKFEVPL-------SE-IDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp HHHHHHHHHHTCCG-------GG-HHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-------hc-cCCcEEEEecCCCCCHHHHHHHHHH
Confidence 22223223322100 00 0135688999999999999988764
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.14 E-value=5.7e-11 Score=95.06 Aligned_cols=159 Identities=17% Similarity=0.048 Sum_probs=77.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
--++|+|.+|+|||||+|+++....... .....|. ......+...+... -..++|+ +|. ..+.....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~ 88 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGV--EFGARMVNIDGKQI-KLQIWDT-AGQ------ESFRSITR 88 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC--------CCS--SEEEEEEEETTEEE-EEEEECC-TTG------GGTSCCCH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCcccc--eeEEEEEEECCEEE-EEEEEEC-CCc------hhhhhhHH
Confidence 3578999999999999999985421100 0011111 11111111111111 1246676 331 11111112
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+..++..+..+ .
T Consensus 89 ~~~---~~~d~ii~v~d-~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~ 158 (191)
T 2a5j_A 89 SYY---RGAAGALLVYD-ITRRETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--L 158 (191)
T ss_dssp HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C
T ss_pred HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--C
Confidence 222 35777777332 333333221110001111110 112458999999999764322 2234444433332 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 159 -------------~~~~~Sa~~~~gi~~l~~~l~~ 180 (191)
T 2a5j_A 159 -------------IFMETSAKTACNVEEAFINTAK 180 (191)
T ss_dssp -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999887753
No 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.14 E-value=1.3e-10 Score=91.84 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=78.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
+..-|+++|.+|+|||||+|+++.... ......+ .... ...+...+... ...++|+ +|.- .+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~------~~~~ 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENTFTKLITVNGQEY-HLQLVDT-AGQD------EYSI 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEEEEEEEEETTEEE-EEEEEEC-CCCC------TTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-ccccEEEEEEECCEEE-EEEEEeC-CCch------hhhH
Confidence 445789999999999999999985321 0111111 1111 11111111111 1246676 3320 0000
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
..... ....|.+++-. .+.++..+.........+..... ..-++.++|+||+|+.+.... ..+...+..+..+
T Consensus 70 ~~~~~---~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 142 (181)
T 3t5g_A 70 FPQTY---SIDINGYILVY-SVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWN 142 (181)
T ss_dssp CCGGG---TTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTT
T ss_pred HHHHH---HhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhccee--cHHHHHHHHHHhC
Confidence 00011 13567776622 23344433222111111211111 112558999999999765432 2344444444331
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ +++.+||++|.|++++..++..
T Consensus 143 --~-------------~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 143 --A-------------AFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp --C-------------EEEECCTTSHHHHHHHHHHHHH
T ss_pred --C-------------cEEEEecCCCCCHHHHHHHHHH
Confidence 1 4688999999999999888764
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.13 E-value=1.5e-10 Score=92.00 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=80.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|||||||+|+++.. +. . ....|.+.....+... ... ..++|+ +|. .. ..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~----~~---~-~~~~t~~~~~~~~~~~--~~~-~~~~Dt-~G~------~~----~~ 76 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE----DV---D-TISPTLGFNIKTLEHR--GFK-LNIWDV-GGQ------KS----LR 76 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC----CC---S-SCCCCSSEEEEEEEET--TEE-EEEEEE-CCS------HH----HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcC----CC---C-cccccCccceEEEEEC--CEE-EEEEEC-CCC------Hh----HH
Confidence 46889999999999999999943 21 1 1111122221111111 111 246777 332 11 11
Q ss_pred HHHHh-ccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 113 QLVQR-KERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
..... ....|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+.. ..+++.+.+.....
T Consensus 77 ~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~ 149 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVD-SADRQRMQDCQRELQSLLVEE-RL-AGATLLIFANKQDLPGAL----SCNAIQEALELDSI 149 (186)
T ss_dssp TTGGGGCTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGC
T ss_pred HHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHhCh-hc-CCCcEEEEEeCccCCCCC----CHHHHHHHhChhhc
Confidence 11111 246788777333 34443332211 111111110 00 114589999999998764 23444444321100
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. . ..-.++.+||++|.|++++.+++..
T Consensus 150 ~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 150 R---------S-HHWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp C---------S-SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred c---------C-CceEEEEeeCCCCCCHHHHHHHHHH
Confidence 0 0 0115788999999999999988764
No 84
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.13 E-value=4.3e-11 Score=93.23 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=75.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
-++++|.+|+|||||+|+++...... ...++ .+.+. ..+...+... -..++|+ +|. ..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~-~~~l~D~-~G~------~~~~~~~ 69 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFNP-----SFITT--IGIDFKIKTVDINGKKV-KLQIWDT-AGQ------ERFRTIT 69 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC--------------CCEEEEEEESSSCEE-EEEEECC-TTG------GGTSCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-----CCCCc--cceeEEEEEEEECCEEE-EEEEEeC-CCC------hhhhhhH
Confidence 47899999999999999998542110 00111 11111 1111111111 1245676 332 1111111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
...+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+... ..+...+..+..+
T Consensus 70 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~-- 138 (170)
T 1g16_A 70 TAYY---RGAMGIILVYD-ITDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRVV---TADQGEALAKELG-- 138 (170)
T ss_dssp HHHH---TTEEEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTCCS---CHHHHHHHHHHHT--
T ss_pred HHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCCcCcc---CHHHHHHHHHHcC--
Confidence 2222 35677777333 333333211110001111110 01245899999999954321 2233333333332
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 139 ~-------------~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 139 I-------------PFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp C-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence 1 4688999999999999988764
No 85
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=1.1e-10 Score=93.64 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=36.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
++.++|+||+|+.+... ..+......+..+ . .++.+||++|.|++++.+++...
T Consensus 115 ~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 115 IPVMLVGNKCDETQREV---DTREAQAVAQEWK--C-------------AFMETSAKMNYNVKELFQELLTL 168 (199)
T ss_dssp SCEEEEEECTTCSSCSS---CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEECccCCcccc---CHHHHHHHHHHhC--C-------------eEEEEecCCCCCHHHHHHHHHHH
Confidence 45899999999986432 2233333333322 1 46789999999999999888653
No 86
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=3.3e-11 Score=96.29 Aligned_cols=160 Identities=16% Similarity=0.093 Sum_probs=78.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-|+++|.+|+|||||+|+|+....... .....+. ......+....... -..++|+ +|. ..+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPE---LAATIGV--DFKVKTISVDGNKA-KLAIWDT-AGQ------ERFRTLT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCCSE--EEEEEEEEETTEEE-EEEEEEE-CSS------GGGCCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCcc---CCCccce--EEEEEEEEECCeEE-EEEEEeC-CCc------hhhhhhh
Confidence 34688999999999999999985421100 0000111 11111111111111 1246677 332 1111112
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
...+ ...|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+... ..+...+..+..+
T Consensus 82 ~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~-- 151 (195)
T 1x3s_A 82 PSYY---RGAQGVILVYD-VTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREV---DRNEGLKFARKHS-- 151 (195)
T ss_dssp HHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCS---CHHHHHHHHHHTT--
T ss_pred HHHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccccc---CHHHHHHHHHHcC--
Confidence 2222 35777777333 3334332211110111221111 11255899999999965421 2333444443321
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++.+++.+
T Consensus 152 ~-------------~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 152 M-------------LFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999888764
No 87
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.13 E-value=3.7e-11 Score=94.45 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=77.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|.+|||||||+|+++....... .....| .......+...+.. ....++|+ +|. ..+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-~~~~i~Dt-~G~------~~~~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQ---LFHTIG--VEFLNKDLEVDGHF-VTMQIWDT-AGQ------ERFRSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-------CCS--EEEEEEEEEETTEE-EEEEEEEC-CCC------GGGHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCcee--eeEEEEEEEECCEE-EEEEEEeC-CCc------hhhhhhH
Confidence 34688999999999999999985421100 011111 11101111111100 11246777 331 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
... ....|.+++-.+ +.++..+.........+..... ....++.++|+||+|+.+... ..+...+..+..
T Consensus 74 ~~~---~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~~- 145 (177)
T 1wms_A 74 TPF---YRGSDCCLLTFS-VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV---STEEAQAWCRDN- 145 (177)
T ss_dssp GGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS---CHHHHHHHHHHT-
T ss_pred HHH---HhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccccc---CHHHHHHHHHhc-
Confidence 111 135677666322 3333322111000011111000 001145899999999974331 234444444322
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. .+++.+||++|.|++++..++..
T Consensus 146 ~~-------------~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 146 GD-------------YPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp TC-------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CC-------------ceEEEEeCCCCCCHHHHHHHHHH
Confidence 11 24788999999999999888764
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.12 E-value=1.6e-10 Score=92.81 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=79.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+..-++++|.+|+|||||+++++.. +.. ...+ |++.....+... ... ..++|+ +|. . .+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~----~~~--~~~~--t~~~~~~~~~~~--~~~-~~i~Dt-~G~--~----~~~~~ 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG----EIV--TTIP--TIGFNVETVEYK--NIC-FTVWDV-GGQ--D----KIRPL 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS----CCE--EEEE--ETTEEEEEEEET--TEE-EEEEEC-C-----------CTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC----Ccc--ccCC--cCceeEEEEEEC--CEE-EEEEEC-CCC--H----hHHHH
Confidence 3346889999999999999999842 221 1111 122221112211 111 246777 332 1 11112
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
....+ ..+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|+||+|+.+.. ..+++.+.+....
T Consensus 90 ~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~l~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~ 159 (192)
T 2b6h_A 90 WRHYF---QNTQGLIFVVD-SNDRERVQESADELQKMLQED-EL-RDAVLLVFANKQDMPNAM----PVSELTDKLGLQH 159 (192)
T ss_dssp HHHHH---HTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGG
T ss_pred HHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHhccc-cc-CCCeEEEEEECCCCCCCC----CHHHHHHHhCccc
Confidence 22222 36777777333 34443332211 111111110 00 115589999999997653 2344444332111
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
... ..-.++.+||++|.|++++.+++..
T Consensus 160 ~~~----------~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 160 LRS----------RTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp CSS----------CCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred ccC----------CceEEEECcCCCcCCHHHHHHHHHH
Confidence 000 0114688999999999999988764
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.12 E-value=1.5e-10 Score=91.65 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=78.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...-|+++|.+|+|||||+|+++..... .....+ .... .......+ ......++|+ +|. ..+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~ 81 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV------DDYDPT-IEDSYLKHTEIDN-QWAILDVLDT-AGQ------EEFSA 81 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC------SCCCTT-CCEEEEEEEEETT-EEEEEEEEEC-CSC------GGGCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC------CCCCCC-ccceeEEEEEeCC-cEEEEEEEEC-CCc------hhhHH
Confidence 3446789999999999999999853110 011111 1111 00111111 1111245676 331 11111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+. ..|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+.... ..+...+..+..+
T Consensus 82 ~~~~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~ 154 (183)
T 3kkq_A 82 MREQYMR---TGDGFLIVYS-VTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN 154 (183)
T ss_dssp SHHHHHH---HCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT
T ss_pred HHHHHHh---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC
Confidence 2222222 4577666222 3444332211110111111100 112458999999999874432 2344444444442
Q ss_pred CCCeEEEeecCCCChhhhhccccC-Ccchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~-~g~~~~~l~~~l~~ 227 (263)
+ +++.+||+ +|.|++++..++..
T Consensus 155 --~-------------~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 155 --I-------------PYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp --C-------------CEEEEBCSSSCBSHHHHHHHHHH
T ss_pred --C-------------eEEEeccCCCCCCHHHHHHHHHH
Confidence 2 36789999 99999999887754
No 90
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.12 E-value=1.1e-10 Score=94.89 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..-++++|.+|+|||||+++++..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999854
No 91
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.12 E-value=5.2e-11 Score=95.98 Aligned_cols=163 Identities=14% Similarity=0.014 Sum_probs=77.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
...-|+++|.+|||||||+|++++.. .. ....++++.......+...+... -..++|++ |. ..+...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~i~Dt~-g~------~~~~~~ 88 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ----GD-SAHEPENPEDTYERRIMVDKEEV-TLVVYDIW-EQ------GDAGGW 88 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE----CC-GGGTTTSCTTEEEEEEEETTEEE-EEEEECCC-CC------SGGGHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc----CC-ccCCCCcccceEEEEEEECCEEE-EEEEEecC-CC------ccchhh
Confidence 34578999999999999999997321 10 01112211111111111111011 11345652 21 111122
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
+..... ...|.+++-.+ +.++..+.........+..... ..-++.++|.||+|+.+.... ..++..+..+..+
T Consensus 89 ~~~~~~--~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~a~~~~- 161 (195)
T 3cbq_A 89 LRDHCL--QTGDAFLIVFS-VTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLS- 161 (195)
T ss_dssp HHHHHH--HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred hHHHhh--ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCc--CHHHHHHHHHHhC-
Confidence 322221 24566666222 3444433221100011111100 012458999999999865432 2334433333221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++..++..
T Consensus 162 -~-------------~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 162 -C-------------KHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp -C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred -C-------------EEEEEcCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999887754
No 92
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.11 E-value=4.9e-11 Score=95.17 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=77.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 108 (263)
...-|+++|.+|||||||+|+++...... ...+ +.+.+. ..+...+... -..++|+ +|. ..+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~ 83 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----RTEA--TIGVDFRERAVDIDGERI-KIQLWDT-AGQ------ERFR 83 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----SCCC--CCSCCEEEEEEEETTEEE-EEEEEEC-CCS------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCC--CcceEEEEEEEEECCEEE-EEEEEEC-CCc------hhhh
Confidence 34568899999999999999998532100 0001 111111 1111111011 1246676 331 2222
Q ss_pred -HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 109 -QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 109 -~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
......+ ..+|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+..+. ..+..++..+.
T Consensus 84 ~~~~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~ 156 (189)
T 1z06_A 84 KSMVQHYY---RNVHAVVFVYD-MTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQV--PTDLAQKFADT 156 (189)
T ss_dssp TTTHHHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHH
T ss_pred hhhhHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccee--CHHHHHHHHHH
Confidence 1222222 36788777332 2333322211100111111110 112458999999999765322 12333333222
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCc---chhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDA---THVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g---~~~~~l~~~l~~ 227 (263)
.+ . .++.+||++| .|++++..++.+
T Consensus 157 ~~--~-------------~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 157 HS--M-------------PLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp TT--C-------------CEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred cC--C-------------EEEEEeCCcCCcccCHHHHHHHHHH
Confidence 21 1 4678999999 888888877643
No 93
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=92.45 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...-|+|+|.+|||||||+|+|+..... .....+ .... ........... ...++|+ +|.- ... .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~--~~~----~ 87 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENTYSKIVTLGKDEF-HLHLVDT-AGQD--EYS----I 87 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEEEEEEEC----CE-EEEEEEE-CCCC--TTC----C
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceEEEEEEEECCEEE-EEEEEEC-CCcc--chH----H
Confidence 3446899999999999999999854211 000111 1111 11111111111 1246777 3310 000 0
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
..... ....|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+.... .........+..+
T Consensus 88 ~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~ 160 (201)
T 3oes_A 88 LPYSF---IIGVHGYVLVYS-VTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWG 160 (201)
T ss_dssp CCGGG---TTTCCEEEEEEE-TTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred HHHHH---HhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcccccc--CHHHHHHHHHHhC
Confidence 00111 135677777332 3344333222111111211111 112458999999999865432 2233333333332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ .++.+||++|.|++++..++..
T Consensus 161 --~-------------~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 161 --A-------------TFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp --C-------------EEEECCTTCHHHHHHHHHHHHH
T ss_pred --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999888764
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=95.61 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-|+++|.+|+|||||+|+++... ... .....|.+.....+... +.. ..++|++ |. ..+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~----~~~--~~~~~t~~~~~~~~~~~--~~~-~~l~Dt~-G~------~~~~~~~ 84 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN----AQS--QNILPTIGFSIEKFKSS--SLS-FTVFDMS-GQ------GRYRNLW 84 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG----GCC--SSCCCCSSEEEEEEECS--SCE-EEEEEEC-CS------TTTGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC----CCC--CCcCCccceeEEEEEEC--CEE-EEEEECC-CC------HHHHHHH
Confidence 3468899999999999999998532 000 01111222222222211 111 2567773 31 1111111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceee-CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH--h
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRL-DSIITDVVILNKVDLVSPERSGDSLDELEKEIH--E 187 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~--~ 187 (263)
... ....|.+++-.+ +.++..+.... ++...+... .. ..-++.++|+||+|+.+.. ..+++.+.++ .
T Consensus 85 ~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 155 (190)
T 2h57_A 85 EHY---YKEGQAIIFVID-SSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAV----TSVKVSQLLCLEN 155 (190)
T ss_dssp GGG---GGGCSEEEEEEE-TTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCC----CHHHHHHHHTGGG
T ss_pred HHH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCC----CHHHHHHHhChhh
Confidence 111 136688777333 33343332211 111111110 00 0124589999999998753 2355555543 1
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+... .-.++.+||++|.|++++.+++..
T Consensus 156 ~~~~------------~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 156 IKDK------------PWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp CCSS------------CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred ccCC------------ceEEEEccCCCCcCHHHHHHHHHH
Confidence 1110 125788999999999999988765
No 95
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.11 E-value=3e-11 Score=110.07 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=81.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l 111 (263)
-|+|+|.+|||||||+|+|+ +...+++.+.+|+|.+.....+... +..+ .++|+ +|. ... .+..+. +
T Consensus 226 kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v-~liDT-~G~--~~~-~~~ve~~gi 294 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWS----QSDRAIVTDLPGTTRDVVESQLVVG--GIPV-QVLDT-AGI--RET-SDQVEKIGV 294 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHH----HHHBSCCSCCTTCCHHHHHHEEEET--TEEE-EECC--------------------
T ss_pred EEEEEcCCCCCHHHHHHHHh----CCCcccccCCCCeeEEEEEEEEEEC--CEEE-EEEEC-Ccc--ccc-hhHHHHHHH
Confidence 37899999999999999999 4444556666776555433333322 2212 46777 442 111 111111 1
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
++.......+|.+++-.+.. ++.......+ ...+.. .+.++|+||+|+.+.... . .++.+.
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s-~~~~~~~~~i-~~~l~~-------~piivV~NK~Dl~~~~~~----~----~~~~~~-- 355 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAA-TGWTTGDQEI-YEQVKH-------RPLILVMNKIDLVEKQLI----T----SLEYPE-- 355 (462)
T ss_dssp ----CCCCSCSEEEEEEETT-TCSCHHHHHH-HHHHTT-------SCEEEEEECTTSSCGGGS----T----TCCCCT--
T ss_pred HHHhhhhhcCCEEEEEeccC-CCCCHHHHHH-HHhccC-------CcEEEEEECCCCCcchhh----H----HHHHhc--
Confidence 22222235678888843322 2211111111 111111 348999999999876421 0 000000
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
...+++.+||++|.|+++|.+++.+..
T Consensus 356 -----------~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 -----------NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp -----------TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 123578899999999999999887643
No 96
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.11 E-value=3.4e-11 Score=94.90 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=75.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..-++++|.+|||||||+|+++....... ..+ +.+.+. ..+...+....-..++|+ +|. .
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~------~---- 69 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----YKA--TIGADFLTKEVTVDGDKVATMQVWDT-AGQ------E---- 69 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-----C-----CCCSCEEEEECCSSSCCEEEEEECC-C-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcc-----cCC--ccceEEEEEEEEEcCCcEEEEEEEEC-CCC------h----
Confidence 34688999999999999999986421100 000 011111 111111011111245676 331 1
Q ss_pred HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744 110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIH 186 (263)
Q Consensus 110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~ 186 (263)
........ ....|.+++-.+ +.++..+.........+..... ....++.++|+||+|+.+..+. ...+...+..+
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~ 147 (182)
T 1ky3_A 70 RFQSLGVAFYRGADCCVLVYD-VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAK 147 (182)
T ss_dssp -------CCSTTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHH
T ss_pred HhhhhhHHHhhcCCEEEEEEE-CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHH
Confidence 11111111 146777777332 3334332211100011111000 0012458999999999654211 11233333332
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. .. ..++.+||++|.|++++..++..
T Consensus 148 ~~-~~-------------~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 148 SL-GD-------------IPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp HT-TS-------------CCEEEEBTTTTBSHHHHHHHHHH
T ss_pred hc-CC-------------CeEEEEecCCCCCHHHHHHHHHH
Confidence 21 11 24678999999999999888754
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=7.2e-11 Score=93.39 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=79.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|.+|||||||+|+++ +.+.....+..| .....+... +.. ..++|+ +|. ...+. ..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~----~~~~~~~~~t~~----~~~~~~~~~--~~~-~~i~Dt-~G~--~~~~~----~~ 79 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ----IGEVVTTKPTIG----FNVETLSYK--NLK-LNVWDL-GGQ--TSIRP----YW 79 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC----CSEEEEECSSTT----CCEEEEEET--TEE-EEEEEE-C------CCT----TG
T ss_pred ccEEEEECCCCCCHHHHHHHHh----cCCcCccCCcCc----cceEEEEEC--CEE-EEEEEC-CCC--HhHHH----HH
Confidence 3568899999999999999998 444432222222 211111111 111 246777 332 11111 01
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.. .....|.+++-.+ ..++..+.... ++...+... . ....+.++|+||+|+.+.. ..+++.+.+....
T Consensus 80 ~~---~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~-~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~- 148 (183)
T 1moz_A 80 RC---YYADTAAVIFVVD-STDKDRMSTASKELHLMLQEE-E-LQDAALLVFANKQDQPGAL----SASEVSKELNLVE- 148 (183)
T ss_dssp GG---TTTTEEEEEEEEE-TTCTTTHHHHHHHHHHHTTSS-T-TSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTT-
T ss_pred HH---HhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHcCh-h-hCCCeEEEEEECCCCCCCC----CHHHHHHHhCccc-
Confidence 11 1136677777333 23333222111 111111110 0 1125589999999998753 2344444432110
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+ .. ..-+++.+||++|.|++++.+++..
T Consensus 149 -~-------~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (183)
T 1moz_A 149 -L-------KD-RSWSIVASSAIKGEGITEGLDWLID 176 (183)
T ss_dssp -C-------CS-SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred -c-------cC-CceEEEEccCCCCcCHHHHHHHHHH
Confidence 0 00 1125788999999999999988764
No 98
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.10 E-value=1.1e-10 Score=91.95 Aligned_cols=160 Identities=16% Similarity=0.034 Sum_probs=77.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
...-++++|.+|||||||+|+++.... .....++ ..... ..+...+.. ....++|+ +|. ..+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~~~Dt-~G~------~~~~~ 72 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDSYTKICSVDGIP-ARLDILDT-AGQ------EEFGA 72 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TTTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCceEEEEEEECCEE-EEEEEEEC-CCc------hhhHH
Confidence 345688999999999999999985411 1111111 11111 111111101 11245777 332 11111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+. ..|.+++-. .+.++..+.........+..... ..-++.++|+||+|+.+..+. ..+......+..
T Consensus 73 ~~~~~~~---~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~- 144 (181)
T 2fn4_A 73 MREQYMR---AGHGFLLVF-AINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQV--PRSEASAFGASH- 144 (181)
T ss_dssp CHHHHHH---HCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHT-
T ss_pred HHHHHHh---hCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHHHHHHHHc-
Confidence 2222222 356666522 23444332221100011101000 112458999999999865432 122233222221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.. .++.+||++|.|++++.+++..
T Consensus 145 -~~-------------~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 145 -HV-------------AYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp -TC-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred -CC-------------eEEEecCCCCCCHHHHHHHHHH
Confidence 11 4678999999999999988764
No 99
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.10 E-value=6.5e-11 Score=94.48 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=78.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-|+|+|.+|+|||||+|+|+....... .....|. ......+....... -..++|+ +|. ...+. ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~l~Dt-~G~--~~~~~----~~ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPA---FVSTVGI--DFKVKTVYRHDKRI-KLQIWDT-AGQ--ERYRT----IT 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCCCCCC--EEEEEEEEETTEEE-EEEEEEC-CSC--CSSCC----SG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC---cCCceeE--EEEEEEEEECCeEE-EEEEEeC-CCc--HHHhh----hH
Confidence 34688999999999999999985421000 0011111 11101111111111 1246677 332 11111 11
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ....|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+.... ..+..++..+..+
T Consensus 89 ~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 158 (189)
T 2gf9_A 89 TAY---YRGAMGFLLMYD-IANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG-- 158 (189)
T ss_dssp GGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--
T ss_pred HHh---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--
Confidence 111 146777777333 333333221111011111110 012458999999999765322 2234444444332
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++.+++..
T Consensus 159 ~-------------~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 159 F-------------EFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence 1 4678999999999999988754
No 100
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.10 E-value=7.4e-11 Score=91.98 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=77.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|+|||||+|+++..... .....+.+.+. ..+...+... -..++|+ +|. ..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~---- 67 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFN-------DKHITTLGASFLTKKLNIGGKRV-NLAIWDT-AGQ------ER---- 67 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC-------SSCCCCCSCEEEEEEEESSSCEE-EEEEEEC-CCC------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC-------cCCCCccceEEEEEEEEECCEEE-EEEEEEC-CCc------Hh----
Confidence 35789999999999999999854210 00000111111 1111111111 1245676 331 11
Q ss_pred HHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
...+... ....|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+...+..+..+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 142 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYD-ITDEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHV--SIQEAESYAESVG 142 (170)
T ss_dssp -----CCSSTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT
T ss_pred hhhhHHHHhccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence 1111111 146677777333 334433222110001111111 011458999999999765322 2344444444332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 143 --~-------------~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 143 --A-------------KHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp --C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred --C-------------eEEEecCCCCCCHHHHHHHHHH
Confidence 1 3578999999999999988754
No 101
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.10 E-value=3.9e-11 Score=93.70 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=79.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+|+++..... ...+ |.+.....+... ... ..++|+ +|. ..+.....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~--t~~~~~~~~~~~--~~~-~~~~Dt-~G~------~~~~~~~~ 69 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV------TTIP--TIGFNVETVTYK--NLK-FQVWDL-GGL------TSIRPYWR 69 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC------CCCC--CSSEEEEEEEET--TEE-EEEEEE-CCC------GGGGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC------CcCC--cCccceEEEEEC--CEE-EEEEEC-CCC------hhhhHHHH
Confidence 45889999999999999999853211 1111 122211111111 111 246777 442 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.. ....|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+.. ..+++.+.+....-.
T Consensus 70 ~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~ 139 (171)
T 1upt_A 70 CY---YSNTDAVIYVVD-SCDRDRIGISKSELVAMLEEE-EL-RKAILVVFANKQDMEQAM----TSSEMANSLGLPALK 139 (171)
T ss_dssp GG---CTTCSEEEEEEE-TTCCTTHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCT
T ss_pred HH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-CCCEEEEEEECCCCcCCC----CHHHHHHHhCchhcc
Confidence 11 146788777333 33333222111 111111110 00 114589999999998764 234454444321100
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.... .++.+||++|.|++++..++..
T Consensus 140 ---------~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 140 ---------DRKW-QIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp ---------TSCE-EEEECCTTTCTTHHHHHHHHHH
T ss_pred ---------CCce-EEEECcCCCCcCHHHHHHHHHH
Confidence 0111 5788999999999999988764
No 102
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.09 E-value=4.8e-11 Score=100.48 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=83.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCC-cccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLV 108 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g-~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~ 108 (263)
...-|+|+|.+|||||||+|+|+. .+..+....++ +|........... +.. ..++|+ +|..-.. ....+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~----~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-i~iiDT-pG~~~~~~~~~~~~ 92 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR----KQAFESKLGSQTLTKTCSKSQGSWG--NRE-IVIIDT-PDMFSWKDHCEALY 92 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT----SCCSCCCTTSCCCCCSCEEEEEEET--TEE-EEEEEC-CGGGGSSCCCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCceeeeeEEEEEEeC--CCE-EEEEEC-cCCCCCCCCHHHHH
Confidence 345789999999999999999994 33222222232 2232222222221 111 246787 5532111 112222
Q ss_pred HHHHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEe-cCCCCCCCCCcchH-----HHH
Q 024744 109 QALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILN-KVDLVSPERSGDSL-----DEL 181 (263)
Q Consensus 109 ~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlN-K~Dl~~~~~~~~~~-----~~~ 181 (263)
..+.+.+. ....+|.+++-.+.. ......... ...+...+......+.++++| |+|+.+.. ....+ +.+
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~--~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~ 168 (260)
T 2xtp_A 93 KEVQRCYLLSAPGPHVLLLVTQLG-RYTSQDQQA--AQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKAL 168 (260)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETT-CCCHHHHHH--HHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHH--HHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHH
Confidence 23333322 124678877744432 122211111 011111110000123677777 99998542 10000 113
Q ss_pred HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.++.+..... .+.. +++||++|.|++++..++..
T Consensus 169 ~~~~~~~~~~~~---------~~~~-~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 169 SKLVAACGGRIC---------AFNN-RAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp HHHHHHTTTCEE---------ECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEE---------EecC-cccccccHHHHHHHHHHHHH
Confidence 334444432110 1223 78999999999999887763
No 103
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=2.1e-10 Score=93.01 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=78.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-|+|+|.+|+|||||+|+++.... ....+.|.+.+.. .+...+... -..++|+ +|. ..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~ 91 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLF-------PPGQGATIGVDFMIKTVEINGEKV-KLQIWDT-AGQ------ERFRSI 91 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-------CTTCCCCCSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-------CCCCCCccceeEEEEEEEECCEEE-EEEEEEC-CCc------HHHHHH
Confidence 4688999999999999999985421 1111111222211 111111111 1246777 331 222211
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+..+. ..+..++..+..+
T Consensus 92 ~~~~---~~~~d~~i~v~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~- 162 (201)
T 2ew1_A 92 TQSY---YRSANALILTYD-ITCEESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD- 162 (201)
T ss_dssp HGGG---STTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT-
T ss_pred HHHH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC-
Confidence 1111 246788777333 333333221110001111110 112458899999999764322 1233333333221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++..++..
T Consensus 163 -~-------------~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 163 -M-------------YYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp -C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred -C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 1 3678999999999999887753
No 104
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.09 E-value=1.8e-10 Score=92.79 Aligned_cols=160 Identities=15% Similarity=0.115 Sum_probs=76.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-|+|+|.+|+|||||+|+++..... .......|.+. ....+...+... ...++|+ +|. ..+....
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~--~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~ 94 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFR---ENISATLGVDF--QMKTLIVDGERT-VLQLWDT-AGQ------ERFRSIA 94 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC-------------C--EEEEEEETTEEE-EEEEEEC-TTC------TTCHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCCcccee--EEEEEEECCEEE-EEEEEEC-CCC------cchhhhH
Confidence 346889999999999999999854211 01111111111 001111111111 1246777 332 2222333
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC------CCCcchHHHHHHHH
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP------ERSGDSLDELEKEI 185 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~------~~~~~~~~~~~~~l 185 (263)
...+ ...|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+. ... ..+...+..
T Consensus 95 ~~~~---~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~ 166 (199)
T 2p5s_A 95 KSYF---RKADGVLLLYD-VTCEKSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLA 166 (199)
T ss_dssp HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHH
T ss_pred HHHH---hhCCEEEEEEE-CCChHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccccccccccc--CHHHHHHHH
Confidence 3333 24677777332 333333222110011111111 112458999999999631 111 122223332
Q ss_pred HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+..+ + .++.+||++|.|++++..++..
T Consensus 167 ~~~~--~-------------~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 167 MTYG--A-------------LFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp HHHT--C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred HHcC--C-------------eEEEeeCCCCCCHHHHHHHHHH
Confidence 2221 1 4678999999999999887754
No 105
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.09 E-value=2e-10 Score=91.58 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=78.3
Q ss_pred CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchh
Q 024744 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (263)
Q Consensus 28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 106 (263)
+++...-|+++|.+|||||||+|+|+..... ....++ .... ...+...+.. ....++|+ +|. ..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~ 81 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFV------DEYDPT-IEDSYRKQVVIDGET-CLLDILDT-AGQ------EE 81 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC---------
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCc------cccCCc-cceEEEEEEEECCEE-EEEEEEEC-CCh------HH
Confidence 3455557889999999999999999853210 111111 1110 0011111101 11246676 331 11
Q ss_pred HHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH 186 (263)
Q Consensus 107 ~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~ 186 (263)
+....... ....|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+... ..+.+++..+
T Consensus 82 ~~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~ 153 (190)
T 3con_A 82 YSAMRDQY---MRTGEGFLCVFA-INNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTV---DTKQAHELAK 153 (190)
T ss_dssp -----------CTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCS---CHHHHHHHHH
T ss_pred HHHHHHHh---hCcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccC---CHHHHHHHHH
Confidence 11111111 135677666332 3344332221111111111110 01245899999999987432 2344444444
Q ss_pred hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+ . +++.+||++|.|++++..++..
T Consensus 154 ~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 154 SYG--I-------------PFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HHT--C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred HcC--C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 332 1 4788999999999999988764
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.08 E-value=4.5e-10 Score=86.70 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=76.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|.+|||||||+|+++..... .....+ .... ...+...+.. ....++|+ +|. ..+.....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~------~~~~~~-~~~~~~~~~~~~~~~-~~~~~~D~-~G~------~~~~~~~~ 69 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFV------DECDPT-IEDSYRKQVVIDGET-CLLDILDT-AGQ------EEYSAMRD 69 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCC------SSCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCc------cccCCc-cceEEEEEEEECCEE-EEEEEEEC-CCc------hhhhHHHH
Confidence 4789999999999999999854211 011111 1100 0001111111 11245677 332 11112222
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
..+. ..|.+++-.+ +.++............+..... ..-++.++|+||+|+.+... ..+...+..+..+ .
T Consensus 70 ~~~~---~~~~~i~v~d-~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~--~ 139 (166)
T 2ce2_X 70 QYMR---TGEGFLCVFA-INNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTV---ESRQAQDLARSYG--I 139 (166)
T ss_dssp HHHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCS---CHHHHHHHHHHHT--C
T ss_pred Hhhc---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhccc---CHHHHHHHHHHcC--C
Confidence 2332 3566555222 3344332221111111111110 01245899999999987432 2333444433332 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+++.+||++|.|++++..++..
T Consensus 140 -------------~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 140 -------------PYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp -------------CEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------eEEEecCCCCCCHHHHHHHHHH
Confidence 4778999999999999988764
No 107
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.08 E-value=1.2e-10 Score=92.33 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=78.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
..-++++|.+|||||||+|+++...... ...+..+.......+...+... -..++|+ +|. ..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~ 76 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKD-----DSNHTIGVEFGSKIINVGGKYV-KLQIWDT-AGQ------ERFRSVT 76 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT-----TCCCCSEEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCccceEEEEEEEEECCEEE-EEEEEeC-CCc------HHHHHHH
Confidence 3468899999999999999998542110 0001100111111111111111 1246777 331 2222222
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
... ...+|.+++-.+ +.++..+.........+..... .-++.++|+||+|+.+.... ...+..+..+..+
T Consensus 77 ~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 146 (186)
T 2bme_A 77 RSY---YRGAAGALLVYD-ITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREV--TFLEASRFAQENE-- 146 (186)
T ss_dssp HTT---STTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--
T ss_pred HHH---HhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccccc--CHHHHHHHHHHcC--
Confidence 111 246787777333 3333332211100011111101 12458999999999754322 2233443333321
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .++.+||++|.|++++..++..
T Consensus 147 ~-------------~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 147 L-------------MFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999888764
No 108
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.07 E-value=1.1e-10 Score=93.43 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=79.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-++++|.+|||||||+++++... .....+ |.+.....+... +.. ..++|+ +|. ..+......
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~----~~~~~~----t~~~~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~~ 86 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDR----LATLQP----TWHPTSEELAIG--NIK-FTTFDL-GGH------IQARRLWKD 86 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC----CCCCCC----CCSCEEEEEEET--TEE-EEEEEC-CCS------GGGTTSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcccc----CCCCCeEEEEEC--CEE-EEEEEC-CCC------HHHHHHHHH
Confidence 67899999999999999999532 111111 122221112111 111 246676 332 111001111
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
. ....|.+++-.+ +.++..+.... +....+... .. .-+|.++|.||+|+.+.. ..+++.+.++......
T Consensus 87 ~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 87 Y---FPEVNGIVFLVD-AADPERFDEARVELDALFNIA-EL-KDVPFVILGNKIDAPNAV----SEAELRSALGLLNTTG 156 (190)
T ss_dssp G---CTTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCCEEEEEECTTSTTCC----CHHHHHHHTTCSSCCC
T ss_pred H---HhcCCEEEEEEE-CCChHHHHHHHHHHHHHHcch-hh-cCCCEEEEEECCCCcCCC----CHHHHHHHhCCccccc
Confidence 1 136677777333 33443322211 111111100 00 114589999999998632 2345554443221000
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. .........+++.+||++|.|++++.+++.+
T Consensus 157 ~---~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 157 S---QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp ------CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred c---ccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 0000111235788999999999999988753
No 109
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.07 E-value=2.2e-11 Score=99.46 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=73.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+|+|.+|||||||+|+|+..... .......+.+. .........+ ......++|+ +|. ..+. .+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~-~~~~~~~~~~-~~~~~~l~Dt-~G~------~~~~-~~~~ 79 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFE---KNYNATVGAVN-HPVTFLDDQG-NVIKFNVWDT-AGQ------EKKA-VLKD 79 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTT---CEEETTTTEEE-EEEEEEBTTS-CEEEEEEEEE-CSG------GGTS-CCCH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceee-EEEEEEeCCC-cEEEEEEEec-CCc------hhhc-hHHH
Confidence 5789999999999999999853211 11122222111 0000011111 1011256777 332 1111 1111
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH 193 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~ 193 (263)
.. ....|.+++-.+ +.++............+..... .-++.++|+||+|+.+..+. ..+......+..
T Consensus 80 ~~--~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~----- 147 (218)
T 4djt_A 80 VY--YIGASGAILFFD-VTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGK----- 147 (218)
T ss_dssp HH--HTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----C--CHHHHHHHTTTC-----
T ss_pred HH--hhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccc--CHHHHHHHHHHc-----
Confidence 11 135677777322 3333322211100011111111 11458999999999865321 112222221111
Q ss_pred EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...++.+||++|.|++++..++..
T Consensus 148 ----------~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 148 ----------NYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp ----------CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred ----------CCcEEEEecCCCCCHHHHHHHHHH
Confidence 124788999999999999888764
No 110
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.06 E-value=3.5e-11 Score=94.66 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=78.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-++++|.+|||||||+|+++...... ...+ |.+.+. ..+...+....-..++|+ +|. ..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~~~~~~~Dt-~G~------~~~~~~ 72 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGK-----QYKQ--TIGLDFFLRRITLPGNLNVTLQIWDI-GGQ------TIGGKM 72 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTH-----HHHH--TTTSSEEEEEEEETTTEEEEEEEEEC-TTC------CTTCTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCC-----CCCC--ceeEEEEEEEEEeCCCCEEEEEEEEC-CCC------ccccch
Confidence 457899999999999999998532100 0000 111111 111111100011246777 332 111111
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
....+ ...|.+++-.+ +.++..+.........+..... .....+.++|+||+|+.+.... ..+...+..+..+
T Consensus 73 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 73 LDKYI---YGAQGVLLVYD-ITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG 146 (178)
T ss_dssp HHHHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT
T ss_pred hhHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC
Confidence 22222 36788777332 3444333221110111111100 0111226789999999764322 2233444333332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
. +++.+||++|.|++++..++...
T Consensus 147 --~-------------~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 147 --F-------------SSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp --C-------------EEEEECTTTCTTHHHHHHHHHHH
T ss_pred --C-------------cEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 36789999999999999888653
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.06 E-value=5.4e-10 Score=96.37 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred ecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744 15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|++.|++..++++.++.+ +|+|++|||||||+|+|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence 47899999999999999887 8999999999999999974
No 112
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.06 E-value=5e-10 Score=89.25 Aligned_cols=158 Identities=16% Similarity=0.052 Sum_probs=77.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..--++|+|.+|||||||+++++...-.. ...+ |.+.-...+...+... ...++|+ +|. ..+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~-- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-----EESP--EGGRFKKEIVVDGQSY-LLLIRDE-GGP------PELQ-- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-----CCCT--TCEEEEEEEEETTEEE-EEEEEEC-SSS------CCHH--
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-----CcCC--CcceEEEEEEECCEEE-EEEEEEC-CCC------hhhh--
Confidence 33467899999999999999998542100 0000 0110000111111111 1245666 332 1111
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.. ...|.+++-.+ +.++..+.........+...... .-++.++|.||+|+.+........+...+..+..+
T Consensus 82 ---~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 152 (184)
T 3ihw_A 82 ---FA---AWVDAVVFVFS-LEDEISFQTVYNYFLRLCSFRNA-SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK- 152 (184)
T ss_dssp ---HH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHTTSCG-GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-
T ss_pred ---ee---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccccCHHHHHHHHHHcC-
Confidence 22 23566666222 34444333211111112111100 11458899999999633221123344444444332
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ...+.+||++|.|++++..++..
T Consensus 153 ~-------------~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 153 R-------------CTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp T-------------CEEEEEBTTTTBTHHHHHHHHHH
T ss_pred C-------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 1 24678999999999999887754
No 113
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.06 E-value=3.9e-10 Score=102.24 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
...-++++|.+|+|||||+++|+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 445788999999999999999964
No 114
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.05 E-value=1.4e-10 Score=93.58 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=76.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-|+|+|.+|||||||+|+|+...... ...+ +.+.+.. .+...+.. .-..++|+ +|. ..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~~ 73 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKA--TIGADFLTKEVMVDDRL-VTMQIWDT-AGQ------ERFQSL 73 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-----SCCC--CCSEEEEEEEEESSSCE-EEEEEEEE-CSS------GGGSCS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCC--cccceEEEEEEEECCEE-EEEEEEeC-CCc------HHHHHh
Confidence 468899999999999999998542110 0011 1111111 11111111 11246777 331 111000
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
.... ....|.+++-.+ +.++..+.........+..... ....++.++|+||+|+.+... ..+......+..
T Consensus 74 ~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~ 146 (207)
T 1vg8_A 74 GVAF---YRGADCCVLVFD-VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV---ATKRAQAWCYSK 146 (207)
T ss_dssp CCGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS---CHHHHHHHHHHT
T ss_pred HHHH---HhCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc---CHHHHHHHHHhc
Confidence 0111 135787777332 3334332111100011111000 001145899999999985432 223333333211
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
.. .+++.+||++|.|++++..++.
T Consensus 147 -~~-------------~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 147 -NN-------------IPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp -TS-------------CCEEECBTTTTBSHHHHHHHHH
T ss_pred -CC-------------ceEEEEeCCCCCCHHHHHHHHH
Confidence 11 2478899999999999988875
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.05 E-value=3.9e-10 Score=88.57 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=77.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+.+.|+++|.+|||||||+|+++... .. ....++.+.......+... +.. ..++|+ +|. ..... .
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~--~~~-~~l~Dt-~G~--~~~~~----~ 71 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK----VT-EQEAGGITQHIGAYQVTVN--DKK-ITFLDT-PGH--EAFTT----M 71 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC----SS-CSSCCSSSTTCCCCEEEET--TEE-EEESCC-CSS--SSSSC----S
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc----cc-cCCCCceeEeeeEEEEEeC--Cce-EEEEEC-CCC--HHHHH----H
Confidence 34578899999999999999998531 10 0111121122111111111 111 135666 332 11110 0
Q ss_pred HHHHHHhccCCcEEEEcccCCCCc--hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 111 LEQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p--~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
.. .....+|.+++-.+ +.++ ....+.+ ..+.. ..++.++|+||+|+.+.. .+++...++..
T Consensus 72 ~~---~~~~~~d~~i~v~d-~~~~~~~~~~~~l---~~~~~-----~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~ 134 (178)
T 2lkc_A 72 RA---RGAQVTDIVILVVA-ADDGVMPQTVEAI---NHAKA-----ANVPIIVAINKMDKPEAN-----PDRVMQELMEY 134 (178)
T ss_dssp CC---SSCCCCCEEEEEEE-TTCCCCHHHHHHH---HHHGG-----GSCCEEEEEETTTSSCSC-----HHHHHHHHTTT
T ss_pred HH---HHHhhCCEEEEEEE-CCCCCcHHHHHHH---HHHHh-----CCCCEEEEEECccCCcCC-----HHHHHHHHHhc
Confidence 00 11235677776433 2221 1111111 11111 114589999999998753 23444444332
Q ss_pred cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+ ..++ ....++.+||++|.|++++.+++..
T Consensus 135 ~~~~----~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 135 NLVP----EEWG--GDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp TCCB----TTTT--SSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcCh----hHcC--CcccEEEEecCCCCCHHHHHHHHHH
Confidence 2111 0000 1135789999999999999988754
No 116
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.05 E-value=7.1e-11 Score=104.13 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.9
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
....|.|+|+|.+|||||||+|+|++.
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999999853
No 117
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.05 E-value=2.3e-11 Score=98.63 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=76.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+++|.+|+|||||+++++...- .....+++.......+...+.. ....++|+ +|. +.+......
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~~~~~~ 97 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKP-VNLGLWDT-AGL------EDYDRLRPL 97 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC------CC-CCCCSEEEEEEEEECC-CE-EEEEEEEE-CCS------GGGTTTGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC------CCCcCCeecceeEEEEEECCEE-EEEEEEEC-CCc------hhhHHHHHH
Confidence 678999999999999999985421 0111111111000011111111 11246777 442 111111111
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCc----------chHHHHH
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG----------DSLDELE 182 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~----------~~~~~~~ 182 (263)
.....|.+++-.+ +.++..+.... .....+.... ..++.++|+||+|+.+..... ...++..
T Consensus 98 ---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 98 ---SYPQTDVFLICFS-LVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp ---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred ---HhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 1246788777332 34444433221 1111122111 124589999999998753100 0011111
Q ss_pred HHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 183 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 183 ~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
...+.. +..+++.+||++|.|++++.+++..
T Consensus 171 ~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 171 AMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHhc--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 111111 2234788999999999999988754
No 118
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=1.9e-10 Score=94.15 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=34.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+|.++|.||+|+.+..+. ..++........+ + +++.+||++|.|++++..++..
T Consensus 146 ~piilVgNK~DL~~~r~v--~~~e~~~~a~~~~--~-------------~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 146 IPIILVGNKSDLVRCREV--SVSEGRACAVVFD--C-------------KFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp SCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred CcEEEEEEChHHhcCceE--eHHHHHHHHHHcC--C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 458999999999754322 1222222111211 1 3678999999999999988754
No 119
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.05 E-value=7.5e-11 Score=95.67 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=76.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..-|+|+|.+|+|||||+|+|+... .. ....+. .+.+.. .+...+... -..++|+ +|. ..+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~----~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~ 84 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK----FN-PSFITT--IGIDFKIKTVDINGKKV-KLQLWDT-AGQ------ERFRT 84 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC----CC-CSSSCC--CSCCEEEEEEEETTEEE-EEEEECC-TTG------GGGTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC----CC-cccCCc--ccceEEEEEEEECCEEE-EEEEEeC-CCc------HHHHH
Confidence 3468899999999999999998532 10 011111 221111 111111001 1246676 332 11111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.....+ ...|.+++-.+ +.++..+.........+.... ...++.++|+||+|+..... ..+...+..+..+
T Consensus 85 ~~~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~ 155 (213)
T 3cph_A 85 ITTAYY---RGAMGIILVYD-VTDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRVV---TADQGEALAKELG 155 (213)
T ss_dssp CCHHHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHT--TTCSEEEEEEECTTCSSCCS---CHHHHHHHHHHHT
T ss_pred HHHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccc---CHHHHHHHHHHcC
Confidence 112222 36777777332 333332211110001111110 11245899999999954321 2233333333321
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 156 --~-------------~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 156 --I-------------PFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp --C-------------CEEECBTTTTBSSHHHHHHHHH
T ss_pred --C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 1 4788999999999999887753
No 120
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=100.17 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=80.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~ 113 (263)
-|+|+|.+|+|||||+++++. .++. ...+ |++.+...+... ... ..++|+ +|. ..+......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~----~~~~--~~~p--T~~~~~~~~~~~--~~~-l~i~Dt-~G~------~~~~~~~~~ 228 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL----GEIV--TTIP--TIGFNVETVEYK--NIS-FTVWDV-GGQ------DKIRPLWRH 228 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS----SCCE--EEEE--ETTEEEEEEEET--TEE-EEEEEC-C-----------CCSHHH
T ss_pred eEEEECCCCccHHHHHHHHhC----CCCC--Cccc--ccceEEEEEecC--cEE-EEEEEC-CCC------HhHHHHHHH
Confidence 578999999999999999984 3221 1111 233333222221 111 256787 331 111112222
Q ss_pred HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.+ ...|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+... .+++...+.......
T Consensus 229 ~~---~~ad~vilV~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~ 298 (329)
T 3o47_A 229 YF---QNTQGLIFVVD-SNDRERVNEAREELMRMLAED-EL-RDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRH 298 (329)
T ss_dssp HH---TTEEEEEEEEE-TTCSSSHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCS
T ss_pred Hh---ccCCEEEEEEE-CCchHHHHHHHHHHHHHHhhh-cc-CCCeEEEEEECccCCcccC----HHHHHHHhchhhhhc
Confidence 22 35677777333 33333222111 111111111 11 1145899999999987642 344544443211100
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..-.++.+||++|.|++++.++|..
T Consensus 299 ----------~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 299 ----------RNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp ----------SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred ----------CCCEEEEEECCCCcCHHHHHHHHHH
Confidence 1125788999999999999988764
No 121
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.04 E-value=6.1e-11 Score=108.54 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=86.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecch---h--H
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH---S--L 107 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~---~--~ 107 (263)
.-|+|+|.||||||||+|+|+ +.+.+++.+.+|+|++.....+... +.. ..++|+ +|... .... . +
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~----~~~~a~vs~~~gTT~d~~~~~i~~~--g~~-~~l~DT-aG~~~-~~~~~ve~~gi 314 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLL----NEDRAIVTDIPGTTRDVISEEIVIR--GIL-FRIVDT-AGVRS-ETNDLVERLGI 314 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHH----HHTBCCCCCSSCCSSCSCCEEEEET--TEE-EEEEES-SCCCS-SCCTTCCCCCH
T ss_pred CEEEEECcCCCcHHHHHHHHH----CCCCCccCCCCCeeeeeEEEEEecC--CeE-EEEEEC-CCccc-cchhhHHHHHH
Confidence 358899999999999999999 4444566777887665544333332 221 246787 44310 1110 0 1
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
...+. .+ ..+|.+++-.+. .++....+...+ ..+. -++.++|+||+|+.+.. ..+++.+.+
T Consensus 315 ~~~~~-~~---~~aD~vl~VvD~-s~~~s~~~~~il-~~l~-------~~piivV~NK~DL~~~~----~~~~~~~~~-- 375 (482)
T 1xzp_A 315 ERTLQ-EI---EKADIVLFVLDA-SSPLDEEDRKIL-ERIK-------NKRYLVVINKVDVVEKI----NEEEIKNKL-- 375 (482)
T ss_dssp HHHHH-HH---HHCSEEEEEEET-TSCCCHHHHHHH-HHHT-------TSSEEEEEEECSSCCCC----CHHHHHHHH--
T ss_pred HHHHH-Hh---hcccEEEEEecC-CCCCCHHHHHHH-HHhc-------CCCEEEEEECccccccc----CHHHHHHHh--
Confidence 11222 22 356777774332 222221111111 1111 13489999999997642 123333321
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+. ..+++.+||++|.|+++|.+++..
T Consensus 376 --~~------------~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 376 --GT------------DRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp --TC------------STTEEEEEGGGTCCHHHHHHHHHH
T ss_pred --cC------------CCcEEEEECCCCCCHHHHHHHHHH
Confidence 10 124788999999999999988765
No 122
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.03 E-value=1.1e-10 Score=92.48 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-|+++|.+|+|||||+++++.. +.. ....+ |.+.+.. .+...+... -..++|+ +|. ..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~----~~~-~~~~~--t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~---- 69 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED----AFN-STFIS--TIGIDFKIRTIELDGKRI-KLQIWDT-AGQ------ER---- 69 (183)
T ss_dssp EEEEEECCCCC---------------------CHHH--HHCEEEEEEEEEETTEEE-EEEEEEC----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC----CCC-CCCCC--cccceeEEEEEEECCEEE-EEEEEcC-CCC------hh----
Confidence 35889999999999999999842 110 01111 1221111 111111011 1246676 331 11
Q ss_pred HHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
...+.. .....|.+++-.+ +.++..+.........+.... ..-++.++|+||+|+.+..+. ..+...+..+..+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~ 144 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYD-ITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG 144 (183)
T ss_dssp ----CCTTTTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT
T ss_pred hhhhHHHHHhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC
Confidence 111111 1146788777333 344443322211111111110 011458999999999765322 2344444444332
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. +++.+||++|.|++++..++..
T Consensus 145 --~-------------~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 145 --I-------------KFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp --C-------------EEEECCC---CCHHHHHHHHHH
T ss_pred --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 1 4678999999999999888753
No 123
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=4e-10 Score=90.46 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=77.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.-|+++|.+|+|||||+++++..... .....+ ..... ..+...+... ...++|+ +|.. . ....
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~--~-----~~~~ 92 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFI------WEYDPT-LESTYRHQATIDDEVV-SMEILDT-AGQE--D-----TIQR 92 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC------SCCCTT-CCEEEEEEEEETTEEE-EEEEEEC-CCCC--C-----CHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC------cccCCC-CCceEEEEEEECCEEE-EEEEEEC-CCCC--c-----ccch
Confidence 35789999999999999999854210 000111 11110 0011111111 1246777 4421 1 1122
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
.... ...|.+++-.+ +.++..+.........+..... ..-+|.++|+||+|+.+..+. ..+...+..+..+
T Consensus 93 ~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~-- 163 (196)
T 2atv_A 93 EGHM---RWGEGFVLVYD-ITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQV--STEEGEKLATELA-- 163 (196)
T ss_dssp HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--
T ss_pred hhhh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--
Confidence 2222 24577666222 3344433221110111111100 112458999999999764322 2233333333331
Q ss_pred CeEEEeecCCCChhhhhccccCCcc-hhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~-~~~~l~~~l~~ 227 (263)
. .++.+||++|. |++++..++..
T Consensus 164 ~-------------~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 164 C-------------AFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp S-------------EEEECCTTTCTTCHHHHHHHHHH
T ss_pred C-------------eEEEECCCcCCcCHHHHHHHHHH
Confidence 1 46789999999 99999888754
No 124
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.03 E-value=7.5e-10 Score=101.46 Aligned_cols=170 Identities=17% Similarity=0.141 Sum_probs=82.8
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeE--EEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI--AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~--~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~ 102 (263)
.....+....++++|.+|+|||||+++|++....... .......|.|++.....+... +. ...++|+ +|-
T Consensus 12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~-~i~iiDt-PGh---- 83 (482)
T 1wb1_A 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NY-RITLVDA-PGH---- 83 (482)
T ss_dssp -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TE-EEEECCC-SSH----
T ss_pred chhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CE-EEEEEEC-CCh----
Confidence 3444456678999999999999999999853210000 111222333333222112111 11 1246777 442
Q ss_pred cchhHHHHHHHHHHhccCCcEEEEcccCCCC--chhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744 103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE 180 (263)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~--p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~ 180 (263)
.++...+ ..-...+|.+++-.+.... +........ ..... ++.++++||+|+.+++ ..+.
T Consensus 84 --~~~~~~~---~~~~~~aD~~ilVvda~~g~~~qt~e~l~~-----~~~~~----ip~IvviNK~Dl~~~~----~~~~ 145 (482)
T 1wb1_A 84 --ADLIRAV---VSAADIIDLALIVVDAKEGPKTQTGEHMLI-----LDHFN----IPIIVVITKSDNAGTE----EIKR 145 (482)
T ss_dssp --HHHHHHH---HHHTTSCCEEEEEEETTTCSCHHHHHHHHH-----HHHTT----CCBCEEEECTTSSCHH----HHHH
T ss_pred --HHHHHHH---HHHHhhCCEEEEEEecCCCccHHHHHHHHH-----HHHcC----CCEEEEEECCCcccch----hHHH
Confidence 2333322 2223567888774432211 221111111 11111 3479999999998753 2333
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.+.++.+.... ..+...+++++||++|+|+++|.++|..
T Consensus 146 ~~~~l~~~l~~~-------~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 146 TEMIMKSILQST-------HNLKNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHHHHHHHHHHS-------SSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-------cccccceEEEEECcCCCCHHHHHHHHHH
Confidence 333333221000 0011235789999999999999988775
No 125
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=93.48 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=72.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.-|+++|.+|+|||||+++++.. +.. .....+ .... ...+...+... ...++|+ +|. ..+....
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~----~~~--~~~~~t-~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~ 99 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG----AFP--ESYTPT-VFERYMVNLQVKGKPV-HLHIWDT-AGQ------DDYDRLR 99 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-------------CCC-CCEEEEEEEEETTEEE-EEEEEEC-----------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcC----CCC--CCCCCc-cceeEEEEEEECCEEE-EEEEEEC-CCc------hhhhHHH
Confidence 46889999999999999999942 211 111111 1100 00011111111 1246676 331 1111111
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCc----------chHHH
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG----------DSLDE 180 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~----------~~~~~ 180 (263)
...+ ...|.+++-.+ +.++..+.... .....+.... .-++.++|+||+|+.+..... ...++
T Consensus 100 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 100 PLFY---PDASVLLLCFD-VTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp --------CEEEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred HHHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 1111 35677777332 34444433221 1111121111 124589999999998753100 00111
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..+..+.+ +...++.+||++|.|++++..++..
T Consensus 173 ~~~~~~~~--------------~~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 173 GQEMARSV--------------GAVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHHHT--------------TCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhc--------------CCCEEEEecCCCCCCHHHHHHHHHH
Confidence 12222221 1225788999999999999988764
No 126
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.59 E-value=2.8e-11 Score=97.93 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-|+++|.+|+|||||+++++.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3578999999999999999984
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=7.8e-10 Score=99.36 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+|.+++++++|++..+++++++.+ +|+|++|||||||+|.|++.
T Consensus 8 ~~~~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 8 LEGYVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -------CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTC
T ss_pred CcCcEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCC
Confidence 346799999999999999999999887 89999999999999999854
No 128
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.02 E-value=4e-10 Score=97.33 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.2
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
....|.|+|+|.+|||||||+|+|++.
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 467889999999999999999999943
No 129
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.01 E-value=1.6e-10 Score=93.44 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=76.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
.-|+|+|.+|+|||||+|+|+...... ...+. .+.+.. .+...+... -..++|+ +|. ..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t--~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~ 73 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTN-----DYIST--IGVDFKIKTVELDGKTV-KLQIWDT-AGQ------ERFRTI 73 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCT-----TCCCS--SCCCEEEEEEEETTEEE-EEEEECC-TTT------TTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCc--ccceeEEEEEEECCEEE-EEEEEeC-CCh------HHHHHH
Confidence 468899999999999999998542100 00111 111111 111111111 1245676 331 111001
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+ +.++..+.........+.... ...++.++|+||+|+.+.... ..+...+..+..+
T Consensus 74 ~~~~---~~~~d~vilv~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 144 (206)
T 2bcg_Y 74 TSSY---YRGSHGIIIVYD-VTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK- 144 (206)
T ss_dssp CGGG---GTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred HHHh---ccCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC-
Confidence 1111 135677777332 333433322111011111110 112458999999999875422 2233333333221
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
. +++.+||++|.|++++..++.
T Consensus 145 -~-------------~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 145 -M-------------PFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp -C-------------CEEECCTTTCTTHHHHHHHHH
T ss_pred -C-------------eEEEEeCCCCCCHHHHHHHHH
Confidence 1 467899999999999988775
No 130
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.00 E-value=3.8e-10 Score=90.78 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=75.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.-|+++|.+|+|||||+++++.. + .......+ ..... ..+...+.. ....++|+ +|.- ... .+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~----~--~~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~~--~~~-----~~ 84 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN----G--YPTEYIPT-AFDNFSAVVSVDGRP-VRLQLCDT-AGQD--EFD-----KL 84 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--------------CC-SSEEEEEEEEETTEE-EEEEEEEC-CCST--TCS-----SS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC----C--CCCCCCCc-ccceeEEEEEECCEE-EEEEEEEC-CCCH--HHH-----HH
Confidence 36789999999999999999942 2 11221222 11110 011111111 11246777 3320 011 01
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCC----------CcchHHH
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPER----------SGDSLDE 180 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~----------~~~~~~~ 180 (263)
... .....|.+++-.+ +.++..+.... .....+..... -++.++|+||+|+.+... .....+.
T Consensus 85 ~~~--~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 85 RPL--CYTNTDIFLLCFS-VVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp GGG--GGTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hHh--hcCCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 111 1246777777332 34444433221 11111211111 245899999999976310 0011222
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.....+..+ ...++.+||++|.|++++..++..
T Consensus 159 ~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 159 AKLLAEEIK--------------AASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp HHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhcC--------------CcEEEEEecCCCCCHHHHHHHHHH
Confidence 222222221 124678999999999999988754
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.00 E-value=6.9e-10 Score=87.34 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
--++++|.+|+|||||+++++... .. ...+ + .+.. ...+...+.. .-..++|+ +|. ..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~----~~--~~~~-t-~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~----- 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS----YQ--VLEK-T-ESEQYKKEMLVDGQT-HLVLIREE-AGA------PD----- 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC----CC--CCSS-C-SSSEEEEEEEETTEE-EEEEEEEC-SSS------CC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC----CC--CcCC-C-cceeEEEEEEECCEE-EEEEEEEC-CCC------ch-----
Confidence 457899999999999999998532 11 0111 1 1111 0011111111 11245676 332 11
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ...|.+++-.+ +.++..+.........+..... ...-+|.++|.||+|+.+........++..+..+...
T Consensus 67 ~~~~---~~~d~~ilv~D-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 141 (178)
T 2iwr_A 67 AKFS---GWADAVIFVFS-LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK- 141 (178)
T ss_dssp HHHH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-
T ss_pred hHHH---HhCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-
Confidence 1122 24677777332 3445443322110011111100 0112568999999999532211112344444433331
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
. ..++.+||++|.|++++..++..
T Consensus 142 ~-------------~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 142 R-------------CSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp S-------------EEEEEEBTTTTBTHHHHHHHHHH
T ss_pred C-------------CeEEEEeccccCCHHHHHHHHHH
Confidence 1 14678999999999999887753
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.00 E-value=4.2e-11 Score=98.16 Aligned_cols=156 Identities=16% Similarity=0.054 Sum_probs=77.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+++|.+|||||||+|+++.. ..........|.+.......+. .... ...++|+ +|. ..+.....
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~-~~~i~Dt-~G~------~~~~~~~~ 82 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGVEVHPLVFHTN--RGPI-KFNVWDT-AGQ------EKFGGLRD 82 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTEEEEEEEEEET--TEEE-EEEEEEE-CSG------GGTSCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccceeEEEEEEEEC--CEEE-EEEEEeC-CCh------HHHhHHHH
Confidence 45789999999999999996532 1112233444432221111111 1111 1246777 442 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...|.+++-.+ +.++..+.........+.... .-++.++|+||+|+.+.... .......+..+
T Consensus 83 ~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--- 148 (221)
T 3gj0_A 83 GYY---IQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--- 148 (221)
T ss_dssp HHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT---
T ss_pred HHH---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccccc----HHHHHHHHHcC---
Confidence 121 35677777332 333333222111011111111 12458999999999765421 11111112111
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+||++|.|++++..++..
T Consensus 149 ------------~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 149 ------------LQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp ------------CEEEECBGGGTBTTTHHHHHHHH
T ss_pred ------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 14678999999999999988764
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.99 E-value=8.8e-11 Score=105.72 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=80.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce-EeecchhHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI-CCTVKHSLVQA 110 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~~~~~ 110 (263)
..-++|+|.+|+|||||+|+|+ +.+.+.+....|+|.......+...... -..++|+ +|.. ...........
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~l~liDT-pG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVYKSMELHPIG--PVTLVDT-PGLDDVGELGRLRVEK 106 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSC----C-------------CCCCEEEEEETTTE--EEEEEEC-SSTTCCCTTCCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEEEEEEECCCC--eEEEEEC-cCCCcccchhHHHHHH
Confidence 4578999999999999999999 5555666666776544333222222111 1246787 4432 11111111122
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
.... ....|.+++-.+. ...+.... + ...+... . ++.++|+||+|+.+.... +. .+.+..
T Consensus 107 ~~~~---l~~aD~vllVvD~--~~~~~~~~-~-l~~l~~~-~----~piIvV~NK~Dl~~~~~~-----~~---~~~l~~ 166 (423)
T 3qq5_A 107 ARRV---FYRADCGILVTDS--APTPYEDD-V-VNLFKEM-E----IPFVVVVNKIDVLGEKAE-----EL---KGLYES 166 (423)
T ss_dssp HHHH---HTSCSEEEEECSS--SCCHHHHH-H-HHHHHHT-T----CCEEEECCCCTTTTCCCT-----HH---HHHSSC
T ss_pred HHHH---HhcCCEEEEEEeC--CChHHHHH-H-HHHHHhc-C----CCEEEEEeCcCCCCccHH-----HH---HHHHHH
Confidence 2222 2467888885543 12221111 1 1111111 2 448999999999877531 11 222211
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.. + .+++.+||++|.|++++.+++...
T Consensus 167 ~~----------g-~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 167 RY----------E-AKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp CT----------T-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred Hc----------C-CCEEEEECCCCCCHHHHHHHHHHh
Confidence 10 1 157889999999999999888754
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.98 E-value=1.6e-10 Score=91.22 Aligned_cols=159 Identities=13% Similarity=0.005 Sum_probs=74.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-++++|.+|+|||||+++++..... .....+ ..... ..+...+... ...++|+ +|. .. +.....
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~i~Dt-~G~--~~----~~~~~~ 74 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNTFP------TDYVPT-VFDNFSANVVVNGATV-NLGLWDT-AGQ--ED----YNRLRP 74 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-----------------CBCCCC--------CEEECC-CC---CT----TTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC------CCCCCe-eeeeEEEEEEECCEEE-EEEEEEC-CCC--hh----hhhhHH
Confidence 5789999999999999999854211 111111 11000 0011111111 1246677 332 11 111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC--------cchHHHHHH
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS--------GDSLDELEK 183 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~--------~~~~~~~~~ 183 (263)
.. ....|.+++-.+ +.++..+.... .....+.... .-++.++|+||+|+.+.... ....++..+
T Consensus 75 ~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 147 (182)
T 3bwd_D 75 LS---YRGADVFILAFS-LISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE 147 (182)
T ss_dssp GG---GTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred hh---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence 11 135788777333 33444332221 1111122111 12458999999999765310 001122222
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+..+ ...++.+||++|.|++++..++...
T Consensus 148 ~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 148 LKKLIG--------------APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcC--------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 222221 1246789999999999999887653
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.2e-10 Score=94.06 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=75.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+++|+....... .....| .......+...+... -..++|+ +|. ..+.....
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~---~~~t~~--~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~ 80 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMD---SKSTIG--VEFATRTLEIEGKRI-KAQIWDT-AGQ------ERYRAITS 80 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC---------C--CSEEEEEEEETTEEE-EEEEECC-TTT------TTTTCCCG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccc--ceeEEEEEEECCEEE-EEEEEEC-CCc------cchhhhHH
Confidence 4688999999999999999985421100 001111 111111111111011 1246676 331 11100011
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ....|.+++-. .+.++..+.........+.... ..-++.++|+||+|+.+..+. ..+...+..+..+ .
T Consensus 81 ~~---~~~~d~vilV~-D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~ 150 (223)
T 3cpj_B 81 AY---YRGAVGALIVY-DISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAV--PTEESKTFAQENQ--L 150 (223)
T ss_dssp GG---TTTCCEEEEEE-C-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred HH---hccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence 11 13567777622 2344443322111011111111 112568999999999764322 2233443333321 1
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.++.+||++|.|++++..++..
T Consensus 151 -------------~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 151 -------------LFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp -------------EEEECCCC-CCCHHHHHHHHHH
T ss_pred -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999988764
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.98 E-value=8e-10 Score=90.09 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=82.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..+-++++|++|+|||||+++|+...... .+....++ ...+. .. . -..++|+ +|. ..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~--~~~~~---~~----~-~~~l~Dt-~G~------~~~~~~ 71 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPL--SAADY---DG----S-GVTLVDF-PGH------VKLRYK 71 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCE--EETTG---GG----S-SCEEEEC-CCC------GGGTHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCce--EEEEe---eC----c-eEEEEEC-CCc------HHHHHH
Confidence 44678999999999999999999642111 11111221 22221 10 0 1246787 442 122223
Q ss_pred HHHHHHh-ccCCcEEEEcccCCCCchhHHHH-hhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 111 LEQLVQR-KERLDHILLETTGLANPAPLASV-LWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
+...+.. ...+|.+++-.+...++..+... .++...+..... ...-+|.++|+||+|+.+........+.+.+.++.
T Consensus 72 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~ 151 (218)
T 1nrj_B 72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 151 (218)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHH
Confidence 3333321 12356665533322122222111 011111110000 11125589999999998875322222233333332
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchh--hhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHV--TRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA 262 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~--~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~ 262 (263)
+... ....++.+||++|.+- ..+...+.....+...+ ....+.++. ....|-..+.+..|+.
T Consensus 152 ~~~~-----------~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~-~~~~v~~~~-~s~~~~~i~~~~~~~~ 215 (218)
T 1nrj_B 152 VIER-----------RKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN-LEASVVAFE-GSINKRKISQWREWID 215 (218)
T ss_dssp HHHH-----------HHHHHHC--------------CTTC----CCCGGG-SSSCEEEEE-CBTTTTBCHHHHHHHH
T ss_pred HHHH-----------HhccccccccccccccchhhhcccccCCCCccccc-cCCceEEEe-ccccCCcHHHHHHHHH
Confidence 2110 1235788999988653 33333333222111111 112344433 3345556778888875
No 137
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=6.9e-10 Score=98.10 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+..|.+.+++..|+...+.++..+.+ +|+|.+|+|||||+|+|+..
T Consensus 14 ~~~~v~~~~l~~~~~~k~~~~~~~~~I-~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -------CCHHHHHHTHHHHHCCEECE-EECCCTTSCHHHHHHHHTTC
T ss_pred CCceEEeccchHHhCCeeecCCCCEEE-EEEcCCCCCHHHHHHHHhCC
Confidence 346688999999999888777777665 79999999999999999743
No 138
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.97 E-value=1.8e-09 Score=85.86 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=79.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+|++... +.. ...+ |.+.....+... ... ..++|+ +|.- ..+. ...
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~--t~~~~~~~~~~~--~~~-~~~~Dt-~G~~--~~~~----~~~ 84 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG----DVV--TTVP--TVGVNLETLQYK--NIS-FEVWDL-GGQT--GVRP----YWR 84 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS----CCE--EECS--STTCCEEEEEET--TEE-EEEEEE-CCSS--SSCC----CCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC----CCC--CcCC--CCceEEEEEEEC--CEE-EEEEEC-CCCH--hHHH----HHH
Confidence 45889999999999999999742 221 1222 122221111111 111 246777 4421 1110 000
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL 191 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~ 191 (263)
. ....+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|+||+|+.+... .+++.+.+....-.
T Consensus 85 ~---~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~ 154 (189)
T 2x77_A 85 C---YFSDTDAVIYVVD-STDRDRMGVAKHELYALLDED-EL-RKSLLLIFANKQDLPDAAS----EAEIAEQLGVSSIM 154 (189)
T ss_dssp S---SSTTCCEEEEEEE-TTCCTTHHHHHHHHHHHHTCS-TT-TTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred H---HhhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHhhh-hc-CCCeEEEEEECCCCcCCCC----HHHHHHHhChhhcc
Confidence 0 0136777777333 33443322211 111111110 00 1145899999999987642 34444433211100
Q ss_pred CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.... +++.+||++|.|++++.+++..
T Consensus 155 ---------~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 155 ---------NRTW-TIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp ---------SSCE-EEEECCTTTCTTHHHHHHHHHH
T ss_pred ---------CCce-EEEEccCCCccCHHHHHHHHHH
Confidence 0011 5788999999999999988764
No 139
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.96 E-value=1.1e-09 Score=89.96 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=75.5
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
|+|+|-+|+|||||+++++...-. .....|++.+... +...+ ...-.++.|++ |- +.+.....
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~f~-------~~~~~Tig~d~~~k~~~~~~-~~v~l~iwDta-Gq------e~~~~l~~ 80 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDSFD-------NTYQATIGIDFLSKTMYLED-RTIRLQLWDTA-GL------ERFRSLIP 80 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCC-----------------CEEEEEECSS-CEEEEEEECCS-CT------TTCGGGHH
T ss_pred EEEECcCCcCHHHHHHHHHhCCCC-------CCcCCccceEEEEEEEEecc-eEEEEEEEECC-Cc------hhhhhHHH
Confidence 679999999999999999854210 0001112222111 11111 11112466763 21 11111122
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
... ...+.+++-. .+.++..+..+......+... . ..-++.+||.||+|+.+..+. ..++..+..+..+ +
T Consensus 81 ~~~---~~a~~~ilv~-di~~~~Sf~~i~~~~~~i~~~-~-~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~--~ 150 (216)
T 4dkx_A 81 SYI---RDSAAAVVVY-DITNVNSFQQTTKWIDDVRTE-R-GSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELN--V 150 (216)
T ss_dssp HHH---TTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHH-H-TTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C
T ss_pred HHh---ccccEEEEEe-ecchhHHHHHHHHHHHHHHHh-c-CCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhC--C
Confidence 222 3566666622 244444433221101111111 0 112458899999999765432 2344444444442 2
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
..+.+||++|.|++++...|.
T Consensus 151 -------------~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 151 -------------MFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp -------------EEEEEBTTTTBSHHHHHHHHH
T ss_pred -------------eeEEEeCCCCcCHHHHHHHHH
Confidence 256789999999999887765
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.95 E-value=2.2e-10 Score=99.02 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=61.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-H
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL-E 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l-~ 112 (263)
-++++|.+|+|||||+|+++.. ......+.++.|++.+...+...+ .. -..++|+ +|. ..+.+.. .
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~----~~~~~~~~~~~Ti~~~~~~~~~~~-~~-~l~i~Dt-~G~------~~~~~~~~~ 71 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN----YSAFDTRRLGATIDVEHSHLRFLG-NM-TLNLWDC-GGQ------DVFMENYFT 71 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC----CCTGGGGGCCCCCSEEEEEEEETT-TE-EEEEEEE-CCS------HHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhC----CCCccccCcCCccceEEEEEEeCC-ce-EEEEEEC-CCc------HHHhhhhhh
Confidence 4789999999999999999853 112223455665655544333211 11 1357787 442 2221110 1
Q ss_pred HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
..... ...+|.+++-.+ +.++..+.........+........-+|.++|+||+|+.+.
T Consensus 72 ~~~~~~~~~ad~vi~V~D-~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFD-VESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TTHHHHHTTCSEEEEEEE-TTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hHHHHHhccCCEEEEEEE-CCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 11110 146788777333 23333222211101111111111112568999999999874
No 141
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.95 E-value=3.9e-10 Score=101.26 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=78.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~~l 111 (263)
.++|+|++|||||||+|+|+.. +.. +.+.+.+|.......+.... ... ..+.++ +|.+... ....+ ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~----~~~-i~~~~ftTl~p~~G~V~~~~-~~~-~~l~Dt-pGli~~a~~~~~L~~~fl 230 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA----HPK-IAPYPFTTLSPNLGVVEVSE-EER-FTLADI-PGIIEGASEGKGLGLEFL 230 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS----CCE-ECCCTTCSSCCEEEEEECSS-SCE-EEEEEC-CCCCCCGGGSCCSCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcC----Ccc-ccCcccceecceeeEEEecC-cce-EEEEec-cccccchhhhhhhhHHHH
Confidence 5899999999999999999844 222 23333333433322332211 011 124455 3322100 00001 1112
Q ss_pred HHHHHhccCCcEEEEcccCCC-CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744 112 EQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS 190 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~-~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p 190 (263)
. .....+.++. ..++. ++...... ...++..+...-...|.++++||+|+.... .++.+.+.++..+
T Consensus 231 ~----~~era~~lL~-vvDls~~~~~~ls~--g~~el~~la~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~~~g- 298 (416)
T 1udx_A 231 R----HIARTRVLLY-VLDAADEPLKTLET--LRKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALAREG- 298 (416)
T ss_dssp H----HHTSSSEEEE-EEETTSCHHHHHHH--HHHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTTT-
T ss_pred H----HHHHHHhhhE-EeCCccCCHHHHHH--HHHHHHHHhHHhhcCCEEEEEECCChhhHH----HHHHHHHHHHhcC-
Confidence 1 1235566554 33333 32221111 111111110000013488999999987641 3344444443211
Q ss_pred CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
..++.+||.+++|+++|.+++..
T Consensus 299 --------------~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 299 --------------LAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp --------------SCEEECCTTTCTTHHHHHHHHHH
T ss_pred --------------CeEEEEECCCccCHHHHHHHHHH
Confidence 14788999999999999888764
No 142
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=90.06 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=78.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
..--|+++|.+|+|||||+++++...-. .....+ ...+. ..+...... ....++|+ +|. ...+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~l~i~Dt-~G~--~~~~~---- 84 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI------SEYDPN-LEDTYSSEETVDHQP-VHLRVMDT-ADL--DTPRN---- 84 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC-----CCC----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC------cccCCC-ccceeeEEEEECCEE-EEEEEEEC-CCC--Ccchh----
Confidence 3346889999999999999999853210 111111 11110 001111111 11246777 332 11111
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI 188 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~ 188 (263)
+...+ ...|.+++-.+ +.++..+.........+..... ...-++.++|.||+|+.+..+. ..++..+..+..
T Consensus 85 -~~~~~---~~~~~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~ 157 (187)
T 3c5c_A 85 -CERYL---NWAHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRF 157 (187)
T ss_dssp -THHHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHH
T ss_pred -HHHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHc
Confidence 22232 24566666222 3344443322111111111100 0012458999999999764322 234444444443
Q ss_pred cCCCeEEEeecCCCChhhhhcccc-CCcchhhhhhhhhhh
Q 024744 189 NSLAHVIRSVRCQVDLSEVLNCRA-YDATHVTRLEGLLEE 227 (263)
Q Consensus 189 ~p~~~i~~~~~~~~~~~~ii~isa-~~g~~~~~l~~~l~~ 227 (263)
+ + .++.+|| ++|.|++++...+..
T Consensus 158 ~--~-------------~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 158 G--C-------------LFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp T--C-------------EEEECCSSSCSHHHHHHHHHHHH
T ss_pred C--C-------------cEEEEeecCccccHHHHHHHHHH
Confidence 2 1 4678999 899999999887654
No 143
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.95 E-value=5.6e-10 Score=90.05 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+|+|||||+++++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999854
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.94 E-value=3.1e-09 Score=95.43 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=37.5
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.++++||+|+.+..+.....+++++.++... ....+++++||++|.|+++|.++|...
T Consensus 139 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 139 NIIIAQNKIELVDKEKALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred cEEEEEECccCCCHHHHHHHHHHHHHHHHhcC------------cCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 37889999999875311112233333332211 012357899999999999999988763
No 145
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=1.6e-09 Score=86.64 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=78.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
.-++++|.+|+|||||+++++...- ......+ ..... ..+...+.. ....++|+ +|. ...+ .+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~D~-~G~--~~~~-----~~ 82 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF------PEEYVPT-VFDHYAVSVTVGGKQ-YLLGLYDT-AGQ--EDYD-----RL 82 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC------CCSCCCS-SCCCEEEEEESSSCE-EEEEEECC-CCS--SSST-----TT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC------CCCCCCc-ccceeEEEEEECCEE-EEEEEEEC-CCC--cchh-----HH
Confidence 4688999999999999999985421 0111111 11110 011111111 11245676 332 1111 01
Q ss_pred HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCC----------CcchHHH
Q 024744 112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPER----------SGDSLDE 180 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~----------~~~~~~~ 180 (263)
... .....|.+++-.+ +.++..+.... .....+.... .-++.++|+||+|+.+... .....++
T Consensus 83 ~~~--~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 83 RPL--SYPMTDVFLICFS-VVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp GGG--GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred HHH--hcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 111 1246788777332 34444332221 1111121111 1245899999999986420 0001222
Q ss_pred HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+..+..+ ...++.+||++|.|++++..++...
T Consensus 157 ~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 157 GQKLAKEIG--------------ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHHHHHT--------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcC--------------CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222222221 1246789999999999999887643
No 146
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.93 E-value=5.1e-10 Score=89.86 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-++++|.+|+|||||+|++++
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999984
No 147
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.93 E-value=2.9e-10 Score=90.44 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++|+|.+|||||||+++++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999995
No 148
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.93 E-value=6.9e-10 Score=90.63 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=78.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
-|+|+|.+|+|||||+++++...-. .....+ ...+.. .+...+.. ....++|++ |. ..+.....
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~l~i~Dt~-G~------~~~~~~~~ 93 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCYP------ETYVPT-VFENYTACLETEEQR-VELSLWDTS-GS------PYYDNVRP 93 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC------SSCCCC-SEEEEEEEEEC--CE-EEEEEEEEC-CS------GGGTTTGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC------CCcCCe-eeeeEEEEEEECCEE-EEEEEEECC-CC------HhHHHHHH
Confidence 5889999999999999999854210 110111 111110 01111111 112466773 31 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCC----------CCcchHHHH
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPE----------RSGDSLDEL 181 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~----------~~~~~~~~~ 181 (263)
.. ....|.+++-.+ +.++..+... ......+.... .-++.++|.||+|+.+.. ......+..
T Consensus 94 ~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 94 LC---YSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GG---CTTCSEEEEEEE-TTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HH---cCCCeEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 11 136788777333 4445444331 11111121111 124589999999997530 000122333
Q ss_pred HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcch-hhhhhhhhhhh
Q 024744 182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLLEEH 228 (263)
Q Consensus 182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~-~~~l~~~l~~~ 228 (263)
.+..+..+ ....+.+||++|.| ++++..++...
T Consensus 167 ~~~~~~~~--------------~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 167 CAIAKQLG--------------AEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--------------CCEEEEeccCCCcccHHHHHHHHHHH
Confidence 33333332 22467899999998 99998887643
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=6e-09 Score=93.53 Aligned_cols=59 Identities=12% Similarity=0.299 Sum_probs=35.2
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
+.++++||+|+.+.++.....+++++.++.... ...+++++||++|+|+++|.++|...
T Consensus 137 ~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~------------~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIA------------ENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp CEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTT------------TTCCEEEC------CHHHHHHHHHHH
T ss_pred eEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCC------------CCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 378999999998765432344555555543211 12357899999999999999988763
No 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=1e-09 Score=88.94 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.-|+++|.+|+|||||+|+++..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36889999999999999999854
No 151
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.92 E-value=1.6e-09 Score=100.60 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=73.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCC-CeEEEEecCCCcccccchhhhhcC--CCCcceeeeeeecCcceEeecchhH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEG--EGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~-~~~~ii~~~~g~t~~~d~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
...-|+++|.+|||||||+|++++..-. .....+..++.++.......+... ..... ..++|+ +|. . .+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~-~~i~Dt-~G~---e---~~ 111 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL-FHFWDF-GGQ---E---IM 111 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCE-EEEECC-CSC---C---TT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEE-EEEEEC-CcH---H---HH
Confidence 3446889999999999999999953210 000001111110000000011111 11111 256787 441 1 11
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.......+ ...|.+++ +.|.............+.... ...+.++|+||+|+.+..+. ..+.+++....
T Consensus 112 ~~~~~~~l---~~~d~ii~----V~D~s~~~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~~~v--~~~~~~~~~~~ 179 (535)
T 3dpu_A 112 HASHQFFM---TRSSVYML----LLDSRTDSNKHYWLRHIEKYG---GKSPVIVVMNKIDENPSYNI--EQKKINERFPA 179 (535)
T ss_dssp TTTCHHHH---HSSEEEEE----EECGGGGGGHHHHHHHHHHHS---SSCCEEEEECCTTTCTTCCC--CHHHHHHHCGG
T ss_pred HHHHHHHc---cCCcEEEE----EEeCCCchhHHHHHHHHHHhC---CCCCEEEEEECCCccccccc--CHHHHHHHHHh
Confidence 11111222 24677777 333332211111111222211 11458999999999875432 23334333322
Q ss_pred hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+ .+++.+||++|.|+++|...+...
T Consensus 180 ~~---------------~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 180 IE---------------NRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp GT---------------TCEEECCC-----CTTHHHHHHHH
T ss_pred cC---------------CceEEEecCcccCHHHHHHHHHHH
Confidence 21 147889999999999999887653
No 152
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.91 E-value=3.2e-09 Score=83.63 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=58.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc------hhhhhcCCCCcceeeeeeecCcceEee
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE------RAMINEGEGGALVEEWVELANGCICCT 102 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d------~~~~~~~~~~~~~~~~~~l~~g~~~~~ 102 (263)
.+++++|+|++|||||||+++|+.. ..|.+++++.++++. .++| ....... +. ..++...++|.||.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~a--Ga--~~v~~~s~~~~~~~ 77 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--GA--VATAVEGDGLLQLH 77 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHhc--CC--CeEEeccCCEEEEE
Confidence 3578999999999999999999875 458899999999874 3332 3222221 11 12344557887776
Q ss_pred cc--hhHHHHHHHHHHhccCCcEEEEcccCC
Q 024744 103 VK--HSLVQALEQLVQRKERLDHILLETTGL 131 (263)
Q Consensus 103 ~~--~~~~~~l~~~~~~~~~~d~ilie~~G~ 131 (263)
.+ +.-.+.+..++.+. .+|++|+|..|-
T Consensus 78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~ 107 (169)
T 1xjc_A 78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ 107 (169)
T ss_dssp ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence 52 11123444555544 899999999985
No 153
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.91 E-value=5e-10 Score=88.50 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..-++++|.+|+|||||+++++..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999999854
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.91 E-value=7.3e-09 Score=85.96 Aligned_cols=28 Identities=39% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 28 DDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+..-|+|+|.+|||||||+|+|++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 3345567899999999999999999953
No 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.90 E-value=4.9e-11 Score=96.14 Aligned_cols=159 Identities=12% Similarity=0.064 Sum_probs=69.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-|+|+|.+|+|||||+|+|+... .. ....++.+.......+...+... ...++|+ +|.- ... ....
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~~--~~~----~~~~ 100 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT----YT-ESYISTIGVDFKIRTIELDGKTI-KLQIWDT-AGQE--RFR----TITS 100 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC----CC-CHHHHHHCCSEEEEEEEETTEEE-EEEEECC-TTCT--TCC----CCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC----CC-CCcCCcccceEEEEEEEECCEEE-EEEEEEC-CCcH--hHH----HHHH
Confidence 367899999999999999998431 10 00011100111111111111001 1245666 3310 000 0000
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA 192 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~ 192 (263)
.. ....|.+++-. .+.++..+.........+..... .-++.++|+||+|+.+..... .+...+..+..+
T Consensus 101 ~~---~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~~~~~--- 169 (199)
T 3l0i_B 101 SY---YRGAHGIIVVY-DVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLG--- 169 (199)
T ss_dssp C-----CCCSEEEECC--CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCC--SCC-CHHHHTTT---
T ss_pred HH---hhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCC--HHHHHHHHHHcC---
Confidence 11 13678877722 23444433222111111111111 124588999999997653211 011112222111
Q ss_pred eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+++.+||++|.|++++..++..
T Consensus 170 ------------~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 170 ------------IPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp ------------CCBCCCCC---HHHHHHHHHHTT
T ss_pred ------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 14788999999999999988764
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.89 E-value=2.2e-09 Score=89.89 Aligned_cols=126 Identities=17% Similarity=0.033 Sum_probs=57.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC-CcccccchhhhhcCCCCcceeeeeeecCcceEeecc----hhH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF-GEEIGVERAMINEGEGGALVEEWVELANGCICCTVK----HSL 107 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~-g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~----~~~ 107 (263)
.-|+|+|.+|||||||+|+|+ +.+..+....+ |+|........... +.. ..++|+ +|.. ... ..+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~----~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~-i~liDT-PG~~--~~~~~~~~~~ 91 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSIL----GQRRFFSRLGATSVTRACTTGSRRWD--KCH-VEVVDT-PDIF--SSQVSKTDPG 91 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHH----TSCCC---------CCSCEEEEEEET--TEE-EEEEEC-CSCS--STTHHHHSTT
T ss_pred eEEEEECCCCCcHHHHHHHHh----CCCCccccCCCCCccccEEEEEEEEC--CcE-EEEEEC-CCCC--CCCCCcHHHH
Confidence 368899999999999999999 44444333332 23333222222221 111 247888 5532 111 112
Q ss_pred HHHHHHHH-HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeC-eEEeeEEEEecCCCCCC
Q 024744 108 VQALEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLD-SIITDVVILNKVDLVSP 171 (263)
Q Consensus 108 ~~~l~~~~-~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~-~~i~~iivlNK~Dl~~~ 171 (263)
...+.+.+ .....+|.+++-...- ......... ...+...+... .-.+.+++.||+|+.+.
T Consensus 92 ~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~--~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 92 CEERGHCYLLSAPGPHALLLVTQLG-RFTAQDQQA--VRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp SHHHHHHHHHHTTCCSEEEEEEETT-BCCHHHHHH--HHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHhcCCCCCEEEEEEeCC-CCCHHHHHH--HHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 22222222 2235788887744322 221111100 01111110000 01348899999999764
No 157
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.89 E-value=1.1e-09 Score=104.63 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=37.5
Q ss_pred eeEEEEecCCCCCCCCCcchHHHHHHHHH-hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 158 TDVVILNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~-~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
+.++|+||+|+++.... .. ..++ ...+ -..++.+++++||.+|.|+++|.+.+..
T Consensus 219 pvIlVlNKiDlv~~~~~---~~---~il~~~~~~---------l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 219 RTIGVITKLDLMDEGTD---AR---DVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SEEEEEECTTSSCTTCC---SH---HHHTTCSSC---------CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CEEEEEeCcccCCcchh---hH---HHHHHHhhh---------hhccCCceEEecccccccchhHHHHHHH
Confidence 48999999999976531 11 1111 1111 1125667899999999999999988875
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.7e-10 Score=106.23 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-|+++|.+|+|||||+|+|+..
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHh
Confidence 6789999999999999999843
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.2e-09 Score=82.55 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=58.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..+.++++|.+|||||||+|+|+..... ..+....++.+. +. . ... ..++|+ +|. ......+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~~~--~~-----~--~~~-~~l~Dt-~G~--~~~~~~~~~~ 111 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLSAA--DY-----D--GSG-VTLVDF-PGH--VKLRYKLSDY 111 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC-----C--CTT-CSEEEE-TTC--CBSSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCceee--ee-----c--CCe-EEEEEC-CCC--chHHHHHHHH
Confidence 3457899999999999999999964211 122223333211 11 0 111 246787 443 2222333333
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hccccccccee-eCeEEeeEEEEecCCCCCCCC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVR-LDSIITDVVILNKVDLVSPER 173 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~ 173 (263)
+...+ ..+|.+++-.+...++..+.... ++...+..... ...-+|.++|+||+|+.+...
T Consensus 112 ~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 112 LKTRA---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HHHHG---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHhhc---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 33322 34677777443332443332211 11111110000 011255899999999988764
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.85 E-value=6.3e-08 Score=90.60 Aligned_cols=180 Identities=16% Similarity=0.225 Sum_probs=86.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccC---CCCeE--EEEec-----CCCcccccchhhhhcCC-CC-cceeeeeeecCcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGK---HGKRI--AVILN-----EFGEEIGVERAMINEGE-GG-ALVEEWVELANGC 98 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~---~~~~~--~ii~~-----~~g~t~~~d~~~~~~~~-~~-~~~~~~~~l~~g~ 98 (263)
.++-++|+|..|+|||||+++|+... ..... .+... +.|-|+......+.... ++ .....++|+ +|-
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT-PGh 83 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT-PGH 83 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC-CCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC-CCc
Confidence 46788999999999999999997531 00000 00000 01111110000111100 11 112357777 442
Q ss_pred eEeecchhHHHHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD 176 (263)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~ 176 (263)
.++.....+.+. ..|.+++-.+... .+....... ..... . ++.++++||+|+.+..
T Consensus 84 ------~dF~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~---~a~~~--~----ipiIvviNKiDl~~a~---- 141 (600)
T 2ywe_A 84 ------VDFSYEVSRALA---ACEGALLLIDASQGIEAQTVANFW---KAVEQ--D----LVIIPVINKIDLPSAD---- 141 (600)
T ss_dssp ------GGGHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHH---HHHHT--T----CEEEEEEECTTSTTCC----
T ss_pred ------HhHHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHH---HHHHC--C----CCEEEEEeccCccccC----
Confidence 344444444442 4566666333221 121111111 00111 1 4589999999998753
Q ss_pred hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 024744 177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI 246 (263)
Q Consensus 177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~ 246 (263)
.+++.+.++.... ++..+++.+||++|.|+++|.+++...-..+. ...+.+.+.+++
T Consensus 142 -~~~v~~el~~~lg-----------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~-~~~~~pl~~lV~ 198 (600)
T 2ywe_A 142 -VDRVKKQIEEVLG-----------LDPEEAILASAKEGIGIEEILEAIVNRIPPPK-GDPQKPLKALIF 198 (600)
T ss_dssp -HHHHHHHHHHTSC-----------CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC-CCTTSCCEEEEE
T ss_pred -HHHHHHHHHHhhC-----------CCcccEEEEEeecCCCchHHHHHHHHhccccc-ccccCCcceeEE
Confidence 3444445544321 12346899999999999999998875443221 223445554443
No 161
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.85 E-value=1.4e-09 Score=88.23 Aligned_cols=161 Identities=15% Similarity=0.049 Sum_probs=79.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
..-++++|.+|+|||||+++++.... ......+ ..... ..+...+.. ....++|+ +|. ...+ .
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~--~~~~-----~ 72 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF------PTDYIPT-VFDNFSANVAVDGQI-VNLGLWDT-AGQ--EDYS-----R 72 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC------CSSCCCS-SCCCEEEEEECSSCE-EEEEEECC-CCC--CCCC-----C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC------CccCCCc-cceeEEEEEEECCEE-EEEEEEEC-CCc--HHHH-----H
Confidence 34688999999999999999985321 0111111 11110 001111111 11246776 332 1111 0
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC------cchHHHHHH
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS------GDSLDELEK 183 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~------~~~~~~~~~ 183 (263)
+... .....|.+++-.+ +.++..+.... .....+.... + -+|.++|+||+|+.+.... ....+...+
T Consensus 73 ~~~~--~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~--~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 LRPL--SYRGADIFVLAFS-LISKASYENVLKKWMPELRRFA--P-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE 146 (212)
T ss_dssp --CG--GGTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC--T-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH
T ss_pred HHHh--hccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC--C-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHH
Confidence 1111 1246788777332 44454433221 1111121111 1 2458999999999764210 001233333
Q ss_pred HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+.++ ...++.+||++|.|++++..++...
T Consensus 147 ~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 147 LRKQIG--------------AAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcC--------------CceEEEccCCCCCCHHHHHHHHHHH
Confidence 333322 1246889999999999999887643
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.85 E-value=8.5e-10 Score=101.20 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+|+|||||+++|+..
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999753
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.85 E-value=3.2e-09 Score=94.09 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=78.3
Q ss_pred CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
....++.++++|.+|+|||||+++|++. |.|++.....+... ... ..++|+ +|- .++
T Consensus 17 ~~~~m~~i~iiG~~d~GKSTL~~~L~~~-------------giTi~~~~~~~~~~--~~~-i~iiDt-PGh------~~f 73 (370)
T 2elf_A 17 RGSHMANVAIIGTEKSGRTSLAANLGKK-------------GTSSDITMYNNDKE--GRN-MVFVDA-HSY------PKT 73 (370)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHTTSEE-------------EEESSSEEEEECSS--SSE-EEEEEC-TTT------TTC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHhC-------------CEEEEeeEEEEecC--CeE-EEEEEC-CCh------HHH
Confidence 3333448999999999999999999821 11121111111111 111 357888 442 233
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEee-EEEEe-cCCCCCCCCCcchHHHHHHHH
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITD-VVILN-KVDLVSPERSGDSLDELEKEI 185 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~-iivlN-K~Dl~~~~~~~~~~~~~~~~l 185 (263)
...+...+ ..+|.+++-.+ ...+.+...... . +..... ++. ++++| |+|+ +++ ..+...+.+
T Consensus 74 ~~~~~~~~---~~aD~ailVvd-~~g~~~qt~e~~--~-~~~~~~----i~~~ivvvNNK~Dl-~~~----~~~~~~~~i 137 (370)
T 2elf_A 74 LKSLITAL---NISDIAVLCIP-PQGLDAHTGECI--I-ALDLLG----FKHGIIALTRSDST-HMH----AIDELKAKL 137 (370)
T ss_dssp HHHHHHHH---HTCSEEEEEEC-TTCCCHHHHHHH--H-HHHHTT----CCEEEEEECCGGGS-CHH----HHHHHHHHH
T ss_pred HHHHHHHH---HHCCEEEEEEc-CCCCcHHHHHHH--H-HHHHcC----CCeEEEEEEeccCC-CHH----HHHHHHHHH
Confidence 33333332 46777777444 211211111000 0 001111 224 88999 9999 542 233333444
Q ss_pred HhhcCCCeEEEeecCCCChhhhhc--cccCC---cchhhhhhhhhhh
Q 024744 186 HEINSLAHVIRSVRCQVDLSEVLN--CRAYD---ATHVTRLEGLLEE 227 (263)
Q Consensus 186 ~~~~p~~~i~~~~~~~~~~~~ii~--isa~~---g~~~~~l~~~l~~ 227 (263)
+++.... .....++++ +||++ |+|+++|.+.+.+
T Consensus 138 ~~~l~~~--------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~ 176 (370)
T 2elf_A 138 KVITSGT--------VLQDWECISLNTNKSAKNPFEGVDELKARINE 176 (370)
T ss_dssp HHHTTTS--------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred HHHHHhc--------CCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence 4432211 012236788 99999 9999988877653
No 164
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.5e-10 Score=98.00 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744 28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (263)
Q Consensus 28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 107 (263)
...+..-|+|+|+||||||||+|+|+ +.+ +.+.+.+++|+....+.+...+ ..+ .++|+ +|.+-.... .
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt----~~~-~~v~~~pftT~~~~~g~~~~~~--~~i-~l~D~-pGl~~~a~~--~ 136 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLT----GTE-SEAAEYEFTTLVTVPGVIRYKG--AKI-QMLDL-PGIIDGAKD--G 136 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHH----SBC-CCGGGTCSSCCCEEEEEEEETT--EEE-EEEEC-GGGCCC------
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHh----CCC-CcccCCCCceeeeeeEEEEeCC--cEE-EEEeC-CCccCCchh--h
Confidence 34455689999999999999999999 444 3346667777776666665532 222 57888 555422111 1
Q ss_pred HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccc-ceeeCeEEeeEEEEecCCC
Q 024744 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES-AVRLDSIITDVVILNKVDL 168 (263)
Q Consensus 108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~-~~~~~~~i~~iivlNK~Dl 168 (263)
.....+.+.....+|+|++-.. ..+|....+.+ ...+.. ...+.. .+.++++||+|.
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD-~~~p~~~~~~i--~~EL~~~~~~l~~-k~~~i~~nK~d~ 194 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILD-VNKPLHHKQII--EKELEGVGIRLNK-TPPDILIKKKEK 194 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEE-TTSHHHHHHHH--HHHHHHTTEEETC-CCCCEEEEECSS
T ss_pred hHHHHHHHHHHHhcCccccccc-cCccHHHHHHH--HHHHHHhhHhhcc-CChhhhhhHhhh
Confidence 1111222222245788777433 34554433221 111111 111111 346788999986
No 165
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.83 E-value=5.4e-10 Score=99.91 Aligned_cols=36 Identities=22% Similarity=0.045 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d 75 (263)
++|+|.||+|||||+|+|+ +.+ +.+.+.+++|+...
T Consensus 3 I~ivG~pnvGKSTL~n~L~----~~~-~~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAAT----LVD-VEIANYPFTTIEAN 38 (397)
T ss_dssp EEEEECTTSSHHHHHHHHH----C---------------CC
T ss_pred EEEECCCCCCHHHHHHHHH----CCC-CcccCCCCcccCCc
Confidence 7899999999999999999 444 45566666655433
No 166
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.82 E-value=1.7e-09 Score=91.52 Aligned_cols=49 Identities=27% Similarity=0.290 Sum_probs=44.0
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+.+++++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 7 ~~~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 7 TPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CCCCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCcceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345789999999999999999988776 7999999999999999999864
No 167
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.81 E-value=3.7e-09 Score=93.31 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=31.8
Q ss_pred EecceeEeCCc---ccCCC--cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 14 IDETTHEFSNS---HENDD--VSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 14 ~~~~~~~~~~~---~~~~~--~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.++.+.||.. .++++ ..+|.|+|+|.+|||||||+|+|++.
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45567777652 34544 48889999999999999999999963
No 168
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.81 E-value=4.5e-09 Score=83.37 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-++++|.+|+|||||+|+++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.80 E-value=4.5e-09 Score=85.25 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-|+++|.+|+|||||+|+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 170
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.77 E-value=2e-09 Score=91.53 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=41.2
Q ss_pred CceEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++||+++|++ ..+++++++. +++|+|++|||||||++.|.+.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999976 4588887766 7999999999999999999864
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.77 E-value=6.6e-09 Score=83.57 Aligned_cols=54 Identities=20% Similarity=0.130 Sum_probs=34.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.++++||+|+.+.... ..+..++.... |.. .++.+||+++.|++++.+++..
T Consensus 111 ~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~--~~~-------------~~~d~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAV--PTDEARAFAEK--NNL-------------SFIETSALDSTNVEEAFKNILT 164 (199)
T ss_dssp CEEEEEEECTTCGGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCc--CHHHHHHHHHH--cCC-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence 347889999999754321 22333333322 332 2566899999999999887753
No 172
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.77 E-value=6.3e-08 Score=90.70 Aligned_cols=181 Identities=19% Similarity=0.260 Sum_probs=85.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCC---CCeE--EEEec-----CCCcccccchhhhhcCC-CC-cceeeeeeecCcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKH---GKRI--AVILN-----EFGEEIGVERAMINEGE-GG-ALVEEWVELANGC 98 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~---~~~~--~ii~~-----~~g~t~~~d~~~~~~~~-~~-~~~~~~~~l~~g~ 98 (263)
.+.-++|+|..|+|||||+++|+.... .... .+... +.|.|+......+.... ++ .....++|+ +|-
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT-PGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT-PGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEEC-CCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC-CCc
Confidence 356789999999999999999985310 0000 00000 01111110000111100 01 112357787 442
Q ss_pred eEeecchhHHHHHHHHHHhccCCcEEEEcccCC--CCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744 99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGL--ANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD 176 (263)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~--~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~ 176 (263)
.++.....+.+. ..|.+++-.+.. ..+....... ..... . ++.++++||+|+.+..
T Consensus 82 ------~dF~~ev~~~l~---~aD~aILVVDa~~gv~~qt~~~~~---~~~~~--~----ipiIvViNKiDl~~a~---- 139 (599)
T 3cb4_D 82 ------VDFSYEVSRSLA---ACEGALLVVDAGQGVEAQTLANCY---TAMEM--D----LEVVPVLNKIDLPAAD---- 139 (599)
T ss_dssp ------GGGHHHHHHHHH---HCSEEEEEEETTTCCCTHHHHHHH---HHHHT--T----CEEEEEEECTTSTTCC----
T ss_pred ------hHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHH---HHHHC--C----CCEEEeeeccCccccc----
Confidence 344445544443 356666533321 1122221111 01111 1 4589999999998753
Q ss_pred hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEE
Q 024744 177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC 247 (263)
Q Consensus 177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 247 (263)
.+++.+.++..... +..+++.+||++|.|+++|.+++......+. ...+.+.+.+++.
T Consensus 140 -~~~v~~ei~~~lg~-----------~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-~~~~~p~~alI~d 197 (599)
T 3cb4_D 140 -PERVAEEIEDIVGI-----------DATDAVRCSAKTGVGVQDVLERLVRDIPPPE-GDPEGPLQALIID 197 (599)
T ss_dssp -HHHHHHHHHHHTCC-----------CCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-CCTTSCCEEEEEE
T ss_pred -HHHHHHHHHHHhCC-----------CcceEEEeecccCCCchhHHHHHhhcCCCcc-ccccCCceeeeee
Confidence 23444444443211 2235789999999999999998876443222 2334455555543
No 173
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.77 E-value=2.1e-09 Score=86.36 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-++++|.+|||||||++++.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999885
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.76 E-value=5e-09 Score=98.28 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
...-|+++|.+|+|||||+++|+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999964
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.76 E-value=3.7e-09 Score=96.30 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..-++++|.+|+|||||+++|+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~ 29 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIY 29 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999999985
No 176
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.76 E-value=7.5e-10 Score=102.33 Aligned_cols=162 Identities=13% Similarity=0.176 Sum_probs=79.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 110 (263)
+.|.|+++|.+|+|||||+++|... ++.. ...+|.|.++....+.... +.. ..++|+ +|- ..+...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~----~~~~-~~~~giT~~i~~~~v~~~~-g~~-i~~iDT-PGh------e~f~~~ 68 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT----QVAA-MEAGGITQHIGAFLVSLPS-GEK-ITFLDT-PGH------AAFSAM 68 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH----HHHH-SSSCCBCCCTTSCCBCSSC-SSC-CBCEEC-SSS------CCTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC----Cccc-ccCCceeEEEeEEEEEeCC-CCE-EEEEEC-CCh------HHHHHH
Confidence 3578899999999999999999842 1110 1122333333222222211 111 246787 442 111111
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~ 189 (263)
.... ...+|.+++-.+......+. .+.+ ..+.. .. +|.++++||+|+.+... +.+...+....
T Consensus 69 ~~~~---~~~aD~vILVVDa~dg~~~qt~e~l---~~~~~-~~----vPiIVViNKiDl~~~~~-----~~v~~~l~~~~ 132 (537)
T 3izy_P 69 RARG---TQVTDIVILVVAADDGVMKQTVESI---QHAKD-AH----VPIVLAINKCDKAEADP-----EKVKKELLAYD 132 (537)
T ss_dssp BBSS---SBSBSSCEEECBSSSCCCHHHHHHH---HHHHT-TT----CCEEECCBSGGGTTTSC-----CSSSSHHHHTT
T ss_pred HHHH---HccCCEEEEEEECCCCccHHHHHHH---HHHHH-cC----CcEEEEEecccccccch-----HHHHHHHHhhh
Confidence 1111 13567766633322111111 1111 01111 11 34899999999976431 11122222221
Q ss_pred CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
..+. .++ ...+++++||++|.|+++|.+++...
T Consensus 133 ~~~e----~~~--~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 133 VVCE----DYG--GDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp SCCC----CSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred hhHH----hcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence 1110 011 12367899999999999999887643
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.75 E-value=2.8e-08 Score=92.37 Aligned_cols=26 Identities=19% Similarity=0.506 Sum_probs=23.1
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+.|+|+|++|||||||+|+|++.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999953
No 178
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=3.1e-09 Score=96.17 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...-++++|.+|+|||||+++|+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHhh
Confidence 3456889999999999999999854
No 179
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.74 E-value=3.2e-09 Score=88.51 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=42.3
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999998889887765 7999999999999999999864
No 180
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.74 E-value=1.1e-08 Score=94.62 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
+.+.++|+|.+|||||||+|+|+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999999997
No 181
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.74 E-value=3e-09 Score=87.74 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=41.6
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 479999999999998899888776 7999999999999999999864
No 182
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.74 E-value=2.7e-09 Score=90.14 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=42.0
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++++||+.+++++.++. +++|+|++|||||||++.|++.
T Consensus 4 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999998899988776 7999999999999999999864
No 183
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.73 E-value=3.1e-09 Score=89.55 Aligned_cols=47 Identities=36% Similarity=0.417 Sum_probs=42.3
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++++++++|++.+++++.++. +++|+|++|||||||++.|++.
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4589999999999998899887665 8999999999999999999864
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.73 E-value=3.1e-08 Score=83.83 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=62.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQ 109 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~ 109 (263)
....++++|.+|+|||||+|+|+ +.++..+.+..++|.......+.. .+.. ..++|+ +|.... ........
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~----~~~~~~~~~~~~~t~~~~~~~~~~--~~~~-l~iiDT-pG~~~~~~~~~~~~~ 109 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSII----GERVVSISPFQSEGPRPVMVSRSR--AGFT-LNIIDT-PGLIEGGYINDMALN 109 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH----TSCCSCCCSSSCCCSSCEEEEEEE--TTEE-EEEEEC-CCSEETTEECHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeeEEEEEee--CCeE-EEEEEC-CCCCCCccchHHHHH
Confidence 35578999999999999999999 433333344444432211111111 1111 257888 554221 12223333
Q ss_pred HHHHHHHhccCCcEEEEc--ccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744 110 ALEQLVQRKERLDHILLE--TTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE 172 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie--~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~ 172 (263)
.+.+.+. ...+|.+++- .++- ...... ..+ ...+...+......+.++|+||+|+.+++
T Consensus 110 ~i~~~~~-~~~~d~il~v~~~d~~-~~~~~~-~~~-~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 110 IIKSFLL-DKTIDVLLYVDRLDAY-RVDNLD-KLV-AKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHTT-TCEECEEEEEEESSCC-CCCHHH-HHH-HHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHhh-cCCCCEEEEEEeCCCC-cCCHHH-HHH-HHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 4433321 2357777774 2221 111111 000 01111111110012489999999998654
No 185
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.72 E-value=1.9e-09 Score=93.29 Aligned_cols=161 Identities=13% Similarity=0.025 Sum_probs=76.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~ 112 (263)
.-++++|.+|+|||||+++++...- .....+++.......+...+.. ....++|+ +|. ..+.....
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~~~~ 221 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKP-VNLGLWDT-AGL------EDYDRLRP 221 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC------CCSCCCCSEEEEEEEEEETTEE-EEEEEEEE-CCC------GGGTTTGG
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC------CcccCCcccceeEEEEEECCEE-EEEEEEeC-CCc------hhhhHHHH
Confidence 3588999999999999999985421 0111122111000011111111 11246777 332 11111111
Q ss_pred HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC----------cchHHHH
Q 024744 113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS----------GDSLDEL 181 (263)
Q Consensus 113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~----------~~~~~~~ 181 (263)
. .....|.+++-.+ +.++..+.... .....+..... .++.++|+||+|+.+.... ....+..
T Consensus 222 ~---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 222 L---SYPQTDVFLICFS-LVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp G---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred H---hccCCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 1 1246788777332 34444332221 11111211111 2458999999999764200 0011112
Q ss_pred HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744 182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 228 (263)
Q Consensus 182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~ 228 (263)
.+..+.. +...++.+||++|.|++++...+...
T Consensus 295 ~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 295 LAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHc--------------CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 2222211 11257889999999999998887643
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.71 E-value=1.4e-08 Score=96.94 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~ 70 (263)
..|+|+|.+|+|||||+|+|+ |.+++.+...+++
T Consensus 70 ~~V~VvG~~naGKSSLlNaLl----g~~~~~v~~~p~T 103 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALI----GENLLPSDVNPCT 103 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHH----TSSCSCCCCCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCCCCCCCCCCc
Confidence 468899999999999999999 4444444444443
No 187
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=5e-09 Score=89.28 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=42.7
Q ss_pred CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+++++++|+++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345689999999999998899988776 7999999999999999999864
No 188
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.67 E-value=1.1e-07 Score=87.14 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=31.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
...+|+|+|++||||||++++|+.. ..|.+++++..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4568999999999999999999753 34889999998864
No 189
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.66 E-value=6.2e-09 Score=87.95 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=41.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 79999999999998899988776 7999999999999999999864
No 190
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.65 E-value=1.6e-08 Score=85.60 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=40.8
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++++++|+++|++..++++.++. +++|+|++|||||||++.|++
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4579999999999998899988776 799999999999999999995
No 191
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.65 E-value=1.6e-08 Score=85.09 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=41.9
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++|+++|++..++++.++. +++|+|++|||||||++.|++.
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 579999999999998899987776 7999999999999999999864
No 192
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.64 E-value=7.9e-09 Score=90.84 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=42.1
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+++||+|+||+..+++++++. +++|+|++|||||||++.|.+.
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 379999999999999999988776 7999999999999999999864
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=1.1e-08 Score=81.87 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=34.7
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.++++||+|+.+.... ..+..++..+. |.. .++.+||+++.+++++.+++..
T Consensus 135 ~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~--~~~-------------~~ld~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 135 IVIMLVGNKSDLRHLRAV--PTDEARAFAEK--NGL-------------SFIETSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CEEEEEEECGGGGGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred CcEEEEEECccccccccc--CHHHHHHHHHH--cCC-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence 347889999999754321 22333333322 333 3556899999999999887754
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.60 E-value=1.3e-07 Score=79.59 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=63.0
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHH
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLV 108 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~ 108 (263)
++...|+++|.+|+|||||+|+|+. .+.+.+....++|.......+... +.. ..++|+ +|-.- ........
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~----~~~~~~~~~~~~t~~~~~~~~~~~--~~~-l~liDT-pG~~~~~~~~~~~~ 105 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG----EQVVRVSPFQAEGLRPVMVSRTMG--GFT-INIIDT-PGLVEAGYVNHQAL 105 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT----SCCSCCCSSCC-CCCCEEEEEEET--TEE-EEEEEC-CCSEETTEECHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCcceeeEEEEEEEC--Cee-EEEEEC-CCCCCcccchHHHH
Confidence 3455789999999999999999994 333333333443332221111111 111 257888 45321 12233444
Q ss_pred HHHHHHHHhccCCcEEEEcccC-CCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744 109 QALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP 171 (263)
Q Consensus 109 ~~l~~~~~~~~~~d~ilie~~G-~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~ 171 (263)
..+.+.+. ...+|.+++-..- .......... + ...+...+......+.++|+||+|+.+.
T Consensus 106 ~~i~~~l~-~~~~~~il~V~~~d~~~~~~~~~~-~-~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 106 ELIKGFLV-NRTIDVLLYVDRLDVYAVDELDKQ-V-VIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHTT-TCEECEEEEEEESSCSCCCHHHHH-H-HHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHh-cCCCCEEEEEEcCCCCCCCHHHHH-H-HHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 45555543 3467887774211 1111111100 0 0111111111111237899999999754
No 195
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.60 E-value=3e-08 Score=83.11 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=40.7
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 69999999999998899988775 799999999999999999995
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.60 E-value=4.6e-08 Score=82.10 Aligned_cols=53 Identities=17% Similarity=0.043 Sum_probs=34.5
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.++|.||+|+.+.. .++...+..+.. .. ..++.+||++|.|++++..++..
T Consensus 199 ~piilV~NK~Dl~~~~----~v~~~~~~~~~~-~~-------------~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 199 KPIVVVLTKCDEGVER----YIRDAHTFALSK-KN-------------LQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp CCEEEEEECGGGBCHH----HHHHHHHHHHTS-SS-------------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCEEEEEEcccccccH----HHHHHHHHHHhc-CC-------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999996542 223232222211 11 14678999999999999887754
No 197
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.59 E-value=1.3e-08 Score=89.57 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=40.6
Q ss_pred CCCCCceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 5 EEDPPLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+...++|++++|+++|++ ..+++++++. +++|+|++|||||||++.|...
T Consensus 18 ~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp -----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3445679999999999974 4678888776 7999999999999999999864
No 198
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.59 E-value=1.1e-07 Score=85.03 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
...-++++|.+|+|||||+++|+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHh
Confidence 345789999999999999999985
No 199
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.58 E-value=1.6e-08 Score=85.88 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=41.4
Q ss_pred CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+|++++|+++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999987 6788887775 7999999999999999999864
No 200
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.58 E-value=1.6e-08 Score=88.84 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=43.0
Q ss_pred CCceEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+++++++++++| |+..++++.++. +++|+|++|||||||++.|.+.
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56789999999999 888888887765 7999999999999999999864
No 201
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.58 E-value=1.6e-08 Score=84.36 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=39.7
Q ss_pred eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++| ++.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999 667788887765 7999999999999999999864
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.57 E-value=2.1e-07 Score=83.84 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=33.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
..+++++|++||||||++.+|... ..|.++.++..|+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 469999999999999999999754 458999999988653
No 203
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.57 E-value=3.2e-08 Score=89.55 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
...-++++|.+|+|||||+++|+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHH
Confidence 345688999999999999999984
No 204
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.57 E-value=1.6e-08 Score=89.55 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=41.4
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|+++||+|+||+..+++++++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 58999999999999999988776 7999999999999999999864
No 205
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.56 E-value=4.3e-08 Score=82.31 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=41.3
Q ss_pred ceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++++++++|+ +..++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999 88888887776 7999999999999999999865
No 206
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.56 E-value=3.2e-08 Score=80.98 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.8
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++++++++++|++ +++++.++. +++|+|++|||||||++.|++.
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999998 889888776 7999999999999999999864
No 207
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.56 E-value=1.4e-08 Score=84.43 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=38.9
Q ss_pred eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++||+++|++ ..+++++++. +++|+|++|||||||++.|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999975 3578887766 7999999999999999999864
No 208
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.56 E-value=2e-08 Score=79.50 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=33.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.+++++|+|++|||||||+++|+.. ..+.+++++.++++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999875 357889999998765
No 209
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.53 E-value=3.1e-08 Score=87.62 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=40.9
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++..++++.++. +++|+|++|||||||++.|.+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 59999999999998899888776 7999999999999999999864
No 210
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.53 E-value=6.7e-08 Score=79.90 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=40.8
Q ss_pred CceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++++++++++|+ +.+++++.++. +++|+|++|||||||++.|++.
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999995 46788887766 7999999999999999999865
No 211
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.53 E-value=5.7e-08 Score=80.77 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=39.9
Q ss_pred eEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ +..++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 589999999998 46788887776 7999999999999999999864
No 212
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.51 E-value=2.9e-08 Score=87.37 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=40.8
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++||+..++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 58999999999998889888776 7999999999999999999864
No 213
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.51 E-value=3.3e-08 Score=87.46 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=41.0
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++||+.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 69999999999998899888776 7999999999999999999864
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.51 E-value=5.4e-08 Score=87.28 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----E--EEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----V--TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----v--v~i~G~~gaGKSTLin~l~~~ 55 (263)
....+++++ +++||+.+ +++.++. + ++|+|++|||||||+|.|++.
T Consensus 13 ~~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 13 GCRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp ----CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 455667777 89998876 6654332 4 999999999999999999843
No 215
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.50 E-value=4.4e-07 Score=81.03 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
-++++|.+|+|||||+++|+.
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~ 25 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITK 25 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhC
Confidence 478999999999999999985
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=2e-07 Score=84.12 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
..+++++|++|+||||++++|... ..|.++.++..|+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 348999999999999999999754 34788999988864
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.49 E-value=3.4e-08 Score=87.41 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=65.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQA 110 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~~ 110 (263)
.++++|.+|+|||||+|+|++... ..+...+++.+|+|.......+.. . ..++|+ ||..... ....+ .+.
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~---~~liDt-PG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---G---ATLYDT-PGIINHHQMAHFVDARD 236 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---T---CEEEEC-CSCCCCSSGGGGSCTTT
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---C---eEEEeC-CCcCcHHHHHHHHhHHH
Confidence 588999999999999999985411 113456677888766543322221 1 247888 6653221 11111 123
Q ss_pred HHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC
Q 024744 111 LEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS 174 (263)
Q Consensus 111 l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~ 174 (263)
+..+.. ....+.+++ +.+|..- ..-+..-+.+. .. -.+.++++||.|.+...+.
T Consensus 237 l~~~~~-~~~i~~~~~----~l~~~~~~~~g~l~~l~~l~----~~-~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 237 LKIITP-KREIHPRVY----QLNEGQTLFFGGLARLDYIK----GG-RRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHHHSC-SSCCCCEEE----EECTTEEEEETTTEEEEEEE----SS-SEEEEEEECTTSCEEEEEG
T ss_pred HHHHhc-ccccCceEE----EEcCCceEEECCEEEEEEcc----CC-CceEEEEecCCcccccccH
Confidence 333321 245566555 4444211 00000001111 11 1458899999999877643
No 218
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.49 E-value=3.5e-08 Score=86.95 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=40.8
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++||+.+++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999998889888776 7999999999999999999864
No 219
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.49 E-value=7.8e-08 Score=80.43 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=39.6
Q ss_pred eEEEecceeEe--CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.|+++||+++| ++..++++.++. +++|+|++|||||||++.|++.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999 467788887765 7999999999999999999865
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.48 E-value=6.8e-08 Score=85.45 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=67.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCC--CeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HH
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQ 109 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~--~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~ 109 (263)
.++++|.+|+|||||+|+|++...+ .+...+++.+|+|.......+.. . ..++|+ ||..... ....+ .+
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~---~~liDt-PG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---E---SSLYDT-PGIINHHQMAHYVGKQ 234 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---S---CEEEEC-CCBCCTTSGGGGSCHH
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---C---eEEEeC-CCcCcHHHHHHHhhHH
Confidence 5789999999999999999865221 23455778888866544322221 1 247888 6653221 11111 23
Q ss_pred HHHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744 110 ALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE 187 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~ 187 (263)
.+..+.. ....+.+++ +.+|..- ..-+..-+.+.. . -.+.++++||+|.+...+ +++..+.+++
T Consensus 235 ~l~~~~~-~~~i~~~~~----~l~~~~~~~~g~l~~~d~l~~----~-~~~~~~v~nk~d~~~~~~----~~~~~~~~~~ 300 (368)
T 3h2y_A 235 SLKLITP-TKEIKPMVF----QLNEEQTLFFSGLARFDYVSG----G-RRAFTCHFSNRLTIHRTK----LEKADELYKN 300 (368)
T ss_dssp HHHHHSC-SSCCCCEEE----EECTTEEEEETTTEEEEEEES----S-SEEEEEEECTTSCEEEEE----HHHHHHHHHH
T ss_pred HHHHhcc-ccccCceEE----EEcCCCEEEEcceEEEEEecC----C-CceEEEEecCcccccccc----HHHHHHHHHH
Confidence 3333322 245555555 3344211 000100111111 1 145899999999987753 4555555554
No 221
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.47 E-value=2.7e-06 Score=81.14 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.3
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.....++|+|.+|+|||||+++|+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 222
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.47 E-value=9.5e-08 Score=80.78 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=39.4
Q ss_pred eEEEecceeEeC--C---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFS--N---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~--~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|+ + ..++++.++. +++|+|++|||||||++.|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 689999999997 4 5688887776 7999999999999999999864
No 223
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.47 E-value=9.3e-08 Score=89.56 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.5
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.|.++|+|.+|+|||||+++|+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~ 27 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRG 27 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhc
Confidence 4568999999999999999999985
No 224
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.46 E-value=9.7e-08 Score=80.45 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=40.5
Q ss_pred CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|++++|+++|++ ..++++.++. +++|+|++|||||||++.|++.
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999986 3578877665 7999999999999999999864
No 225
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.46 E-value=3.8e-08 Score=84.85 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=40.9
Q ss_pred CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|+ +..+++++++. +++|+|++|||||||++.|++.
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45699999999995 57788888776 7999999999999999999864
No 226
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=83.90 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=42.7
Q ss_pred CCCceEEEecceeEe--CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+..|++++|+++| ++..+++++++. +++|+|++|||||||++.|...
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 345689999999999 678889988776 7999999999999999999853
No 227
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.46 E-value=4e-08 Score=89.68 Aligned_cols=24 Identities=42% Similarity=0.360 Sum_probs=20.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
....++++|.+|+|||||+++|+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 345789999999999999999974
No 228
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.44 E-value=4.2e-08 Score=86.00 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=39.5
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++|++. ++++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 48899999999987 88888776 7999999999999999999864
No 229
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.44 E-value=3.2e-08 Score=87.02 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=40.6
Q ss_pred eEEEecceeEeCCcc--cCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++||+.+ ++++.++. +++|+|++|||||||++.|.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 589999999999888 88888776 7999999999999999999864
No 230
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.44 E-value=2.5e-07 Score=88.28 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.5
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..+..++|+|.+|+|||||+|+|+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
No 231
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.40 E-value=7.1e-08 Score=80.32 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=36.6
Q ss_pred eEEEecceeEeCCcccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++++||+ .+++.++. +++|+|++|||||||++.|.+.
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999986 37766554 7999999999999999999864
No 232
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.36 E-value=5.5e-08 Score=89.15 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.8
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.|.++++|.+|+|||||+++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~ 26 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRS 26 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999985
No 233
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.35 E-value=2e-06 Score=85.29 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.1
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
....|+++|.+|+|||||+++|+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Confidence 345689999999999999999985
No 234
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.34 E-value=2.3e-07 Score=78.32 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=39.2
Q ss_pred eEEEecceeEeCC----cccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSN----SHENDDVSVG----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++|++ ..++++.++. +++|+|++|||||||++.|+..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999987 7788877665 7999999999999999999853
No 235
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.27 E-value=4e-06 Score=75.44 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=32.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
..+++++|++||||||++.+|... ..|.++.++..|..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 458999999999999999999753 45889999988864
No 236
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.25 E-value=9.3e-07 Score=82.79 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=41.1
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...++++||+++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999975 6788888765 7999999999999999999864
No 237
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.24 E-value=4.7e-07 Score=85.19 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCceEEEecceeEeCCc--cc------------CCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNS--HE------------NDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~--~~------------~~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++..++++++++.|+.. +. -....+|.++|+|++|||||||++.|++.
T Consensus 7 ~~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 7 SPGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence 35578999999999752 11 13467899999999999999999999864
No 238
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.24 E-value=7.5e-06 Score=77.79 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
....++|+|.+|+|||||+++|+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCChHHHHHHHHHH
Confidence 456899999999999999999984
No 239
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.17 E-value=3.1e-06 Score=78.30 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+...++|+|.+|+|||||+++|+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4567899999999999999999853
No 240
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.12 E-value=7.1e-06 Score=69.34 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|+|++|||||||+|.|++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 241
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.11 E-value=2.2e-05 Score=75.07 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++..++|+|..|+|||||+++|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.11 E-value=1.6e-06 Score=72.55 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=36.4
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++++ .++++.++. +++|+|++|||||||++.|++.
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999987 677877665 7999999999999999999854
No 243
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.09 E-value=1.1e-06 Score=82.67 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=41.0
Q ss_pred CceEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 346999999999975 6688988776 8999999999999999999864
No 244
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.08 E-value=1.3e-05 Score=69.55 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=30.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
-.+++++|++|||||||++.|... ..+.++.+...+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 349999999999999999999764 34678888777653
No 245
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.06 E-value=9.2e-07 Score=82.90 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=40.6
Q ss_pred CceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|+ +.+++++.++. +++|+|++|||||||++.|++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999995 46788887665 7999999999999999999864
No 246
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.06 E-value=2.4e-06 Score=79.97 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=40.8
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 357999999999974 6788887665 7999999999999999999864
No 247
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.05 E-value=1.4e-06 Score=81.78 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCceEEE--------ecceeEeCCcc-cCCCcc-eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRI--------DETTHEFSNSH-ENDDVS-VG---VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~--------~~~~~~~~~~~-~~~~~~-~~---vv~i~G~~gaGKSTLin~l~~~ 55 (263)
||-.+|++ ++++++||+.. ++.+.+ ++ +++|+|++|||||||++.|.+.
T Consensus 79 ~p~~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 79 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CSSCCCEEEEECTTGGGSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcceEEEecCCccccCCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34457899 99999998863 676665 22 8999999999999999999864
No 248
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.03 E-value=9.9e-07 Score=82.54 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=40.5
Q ss_pred CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...++++||+++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 357999999999975 5688887665 7999999999999999999864
No 249
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.00 E-value=5.5e-06 Score=81.23 Aligned_cols=49 Identities=27% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.....+...+++++||+..+++++++. +++|+|++|||||||++.|.+
T Consensus 430 ~~~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 430 EDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp CSSSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445567777999999999999988776 799999999999999999984
No 250
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.00 E-value=2.6e-06 Score=83.53 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.++++++|++++|++ .+++++.++. +++|+|++|||||||++.|++.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999975 5678887665 7999999999999999999865
No 251
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.99 E-value=3.9e-05 Score=71.21 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++.-++|+|-.++|||||..+|+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~ 53 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLL 53 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999964
No 252
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.99 E-value=2.5e-06 Score=72.85 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=34.0
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCC--------CCeEEEEecCC
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKH--------GKRIAVILNEF 68 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~--------~~~~~ii~~~~ 68 (263)
..+.++++++++++ ..++++.++. +++|+|++|||||||++.|++..+ +.+++++.+++
T Consensus 37 ~~~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~ 108 (290)
T 2bbs_A 37 GDDSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS 108 (290)
T ss_dssp -------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSC
T ss_pred CCceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCC
Confidence 34679999999863 5678877665 799999999999999999986421 12456666553
No 253
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.98 E-value=1.6e-06 Score=81.31 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=38.7
Q ss_pred EEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|+++||+++|++. +++++.++. +++|+|++|||||||++.|++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999999999753 578887665 7999999999999999999864
No 254
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.97 E-value=1.9e-06 Score=75.49 Aligned_cols=51 Identities=27% Similarity=0.304 Sum_probs=43.6
Q ss_pred CCCCCceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744 5 EEDPPLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
...++++++.+++++.|+ +.++++++ ++ +++|+|++|||||||++.|++..
T Consensus 39 ~~~~~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 39 YAEPPDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CCCCSCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCCCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345667899999999998 67888877 55 79999999999999999998763
No 255
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.91 E-value=1.4e-06 Score=72.92 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=25.3
Q ss_pred CCCceEEEecc-eeEe-CCcccCCCcc--------eEEEEEEccCCCcHHHHHHHHHc
Q 024744 7 DPPLAVRIDET-THEF-SNSHENDDVS--------VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 7 ~~~~~~~~~~~-~~~~-~~~~~~~~~~--------~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.+++++++++ +++| ++.+++++++ -..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 13 NSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ccCCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999 9999 7777776642 34799999999999999999974
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.91 E-value=8.7e-07 Score=68.91 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=34.7
Q ss_pred EEEecceeEeCCcccCCCc-----ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 12 VRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+...+++++||+..++++. .-.+++|+|++|||||||++.|++.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3345588999887777763 3348999999999999999999853
No 257
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.87 E-value=6.8e-06 Score=69.91 Aligned_cols=38 Identities=32% Similarity=0.294 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV 74 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~ 74 (263)
..++++|.||+|||||+|+|+ +.+.+.+.+.+|+|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~T~~~ 158 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGITTSQ 158 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHH----TSCCC------------
T ss_pred ceEEEEecCCCchHHHHHHHh----cCceeecCCCCCeeeee
Confidence 368899999999999999999 66666677778876544
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.84 E-value=6.5e-07 Score=76.97 Aligned_cols=45 Identities=16% Similarity=-0.001 Sum_probs=37.3
Q ss_pred eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.|++++|+++|+ .++++++++. +++|+|++|||||||++.|++..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 588999999998 6667665433 89999999999999999998544
No 259
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.82 E-value=5.8e-06 Score=76.61 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=34.2
Q ss_pred eEEE-ecceeEeCCc-ccCCCcc-eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRI-DETTHEFSNS-HENDDVS-VG---VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~-~~~~~~~~~~-~~~~~~~-~~---vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++ +||+++||+. .++.+.+ +. +++|+|++|||||||++.|.+.
T Consensus 20 ~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 20 MEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ----CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred ChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566 5899999986 3677665 22 8999999999999999999864
No 260
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.81 E-value=4.2e-06 Score=75.58 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=42.2
Q ss_pred CCCceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744 7 DPPLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.++++++++++++.|+ +.++++++ ++ +++|+|++|||||||++.|++..
T Consensus 127 ~~~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 127 PPFNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CCCCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4567899999999997 67788877 66 89999999999999999998753
No 261
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.73 E-value=2.9e-05 Score=72.94 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCceEEEecceeEeCCcccCCCcc--eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVS--VG---VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+..++++++++++|++. .+...+ ++ +++|+|++|||||||++.|.+.
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999874 233322 22 8999999999999999999864
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.72 E-value=2.2e-05 Score=80.00 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=40.2
Q ss_pred CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|.+ .+++++.++. .++|+|++|||||||++.|.+-
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 347999999999964 3578888776 6999999999999999999864
No 263
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.71 E-value=4.1e-05 Score=72.35 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=20.4
Q ss_pred hhhhccccCCcchhhhhhhhhhhhc
Q 024744 205 SEVLNCRAYDATHVTRLEGLLEEHQ 229 (263)
Q Consensus 205 ~~ii~isa~~g~~~~~l~~~l~~~~ 229 (263)
.+++..||+++.|++.|.+.+..+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred ccccccccccCCCchhHhhhhhccc
Confidence 3567789999999999999887643
No 264
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.71 E-value=3.2e-05 Score=71.60 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred CCceEEEecceeEeCCcccCCCcc--e---EEEEEEccCCCcHHHHHHHHHccCC--------CCeEEEEecCC
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVS--V---GVTVITGFLGAGKSTLVNYILNGKH--------GKRIAVILNEF 68 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~vv~i~G~~gaGKSTLin~l~~~~~--------~~~~~ii~~~~ 68 (263)
+.+++++++++++|++. .+...+ + .+++|+|++|||||||++.|.+..+ ..+++++.++.
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~ 356 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI 356 (538)
T ss_dssp CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence 35689999999999874 233322 2 2899999999999999999987521 23466666653
No 265
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.71 E-value=1.2e-05 Score=81.68 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.0
Q ss_pred ceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..|+++||+++|++ .+++++.++. .++|+|++|||||||++.|++.
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999975 3578887775 7999999999999999999764
No 266
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.68 E-value=1.8e-05 Score=74.32 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=34.3
Q ss_pred CCCceEEEec--------ceeEeCCcc-cCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744 7 DPPLAVRIDE--------TTHEFSNSH-ENDDVSVG----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 7 ~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
||=.+|++.| ++++||... .+.....+ +++|+|++|||||||++.|.+.
T Consensus 65 cp~~~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 65 CPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CSSCCEEEEEESSSSSTTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCccceEEecCChhhcCCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4555677744 567776543 22222222 8999999999999999999864
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=2.6e-05 Score=64.25 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=36.2
Q ss_pred eEEEecceeEeCCc-ccCCCcceE---EEEEEccCCCcHHHHHHHHH--cc-CCCCeEEEEecC
Q 024744 11 AVRIDETTHEFSNS-HENDDVSVG---VTVITGFLGAGKSTLVNYIL--NG-KHGKRIAVILNE 67 (263)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~~---vv~i~G~~gaGKSTLin~l~--~~-~~~~~~~ii~~~ 67 (263)
++++++++..+... ..+.+ .++ +++|+|++|||||||++.|+ .. .++....++..+
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G-gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG-GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT-SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred ccccceeecCCHhHHHHhcC-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45666677666553 33322 343 89999999999999999987 33 335555555544
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.65 E-value=3.5e-06 Score=68.51 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred eeEeCCcccCCCcceE-EEEEEccCCCcHHHHHHHHHc
Q 024744 18 THEFSNSHENDDVSVG-VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 18 ~~~~~~~~~~~~~~~~-vv~i~G~~gaGKSTLin~l~~ 54 (263)
.|+||+..+++++.-. +++|+|++|||||||++.|+.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677877788776444 899999999999999999984
No 269
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.64 E-value=4.2e-05 Score=77.93 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=40.2
Q ss_pred CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|.+ .+++++.++. .++|+|++|||||||++.|++.
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 347999999999965 4678887665 7999999999999999999874
No 270
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.64 E-value=7.2e-05 Score=69.79 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.1
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
....+|+|+|+||+|||||+|+|++
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcC
Confidence 3556899999999999999999994
No 271
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.63 E-value=2.6e-05 Score=67.56 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.0
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
++++|.+|+|||||++++..
T Consensus 2 IvllGdsgvGKTSLl~~~~~ 21 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFH 21 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57999999999999998874
No 272
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.63 E-value=2.6e-05 Score=79.26 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=40.8
Q ss_pred CceEEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...|+++||+++|+++ +++++.++. +++|+|++|||||||++.|.+.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3569999999999764 588888776 7999999999999999999864
No 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.62 E-value=5.2e-05 Score=70.20 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCceEEEecceeEeCCcccC-CCcceE---EEEEEccCCCcHHHHHHHHHcc
Q 024744 8 PPLAVRIDETTHEFSNSHEN-DDVSVG---VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+.+++++++++|++.... .+..++ +++|+|++|||||||++.|.+.
T Consensus 266 ~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999985432 122333 8999999999999999999864
No 274
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.62 E-value=5.3e-06 Score=71.43 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=39.6
Q ss_pred CceEEEecceeEeCCcccCCCc------------------------ceEEEEEEccCCCcHHHHHHHHHcc----CCCCe
Q 024744 9 PLAVRIDETTHEFSNSHENDDV------------------------SVGVTVITGFLGAGKSTLVNYILNG----KHGKR 60 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~vv~i~G~~gaGKSTLin~l~~~----~~~~~ 60 (263)
+.+|++++|++.|+. ++++. .-.+++|+|++|||||||++.|.+. ..+.+
T Consensus 35 ~~~i~~~~v~~~y~~--~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 35 NEDLSLEEVAEIYLP--LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp CTTCCHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccccchHhHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 356888999999953 22221 2248999999999999999999763 23455
Q ss_pred EEEEecC
Q 024744 61 IAVILNE 67 (263)
Q Consensus 61 ~~ii~~~ 67 (263)
+.++..+
T Consensus 113 i~vi~~d 119 (308)
T 1sq5_A 113 VELITTD 119 (308)
T ss_dssp EEEEEGG
T ss_pred EEEEecC
Confidence 6665544
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.59 E-value=0.00022 Score=60.92 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=31.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG 69 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g 69 (263)
.+++++|++||||||++..|... ..|+++.++..|..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 48999999999999999999753 35889999998864
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=3.6e-05 Score=61.87 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=24.3
Q ss_pred CcccCCCcceEEEEEEccCCCcHHHHHHHHHccC
Q 024744 23 NSHENDDVSVGVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 23 ~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++-++.+.-.+++|+|++|||||||+++|++..
T Consensus 10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ------CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3455555666689999999999999999998654
No 277
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.58 E-value=3.7e-05 Score=64.64 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG 73 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~ 73 (263)
..++++|.||+|||||+|+|. +.+...+.+.+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~----~~~~~~~~~~~g~T~~ 136 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK----GKRASSVGAQPGITKG 136 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH----TTCC----------CC
T ss_pred hheEEeCCCCCCHHHHHHHHh----cccccccCCCCCCccc
Confidence 467899999999999999999 4444445555666543
No 278
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=0.00029 Score=63.38 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=33.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGE 70 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~-~~~~~ii~~~~g~ 70 (263)
...+++++|.+|+||||+...|... .. |+++.++..|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3458889999999999999999754 34 8999999999754
No 279
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.56 E-value=1e-05 Score=71.86 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..++|+|+||||||||+|+|++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999995
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.55 E-value=1.2e-05 Score=67.65 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=29.4
Q ss_pred eEEEecceeEeCCcccCCCcce---EEEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDVSV---GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++++++ +++++.++ .+++|+|++|||||||++.|+..
T Consensus 5 ~~~l~~l~~~----~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp -CCGGGSSCC----THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCChHHCCCH----HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 4556666653 34444333 38999999999999999999864
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.4e-05 Score=60.19 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+++|+|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998643
No 282
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.52 E-value=4.5e-05 Score=63.18 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=19.7
Q ss_pred EeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744 20 EFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 20 ~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~ 54 (263)
+-|+..++++.++. +++|+|++|||||||++.|.+
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33455566655443 799999999999999999975
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.51 E-value=4.3e-05 Score=61.64 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=27.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~ 67 (263)
.+++|+|++|||||||++.|....+ |...+++..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 4899999999999999999975421 3456666654
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=9.5e-05 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999854
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.47 E-value=5.8e-05 Score=60.30 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 37999999999999999999864
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.47 E-value=5.9e-05 Score=60.79 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++|+|++|||||||++.|++..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 89999999999999999998643
No 287
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.47 E-value=3.1e-05 Score=71.71 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=30.6
Q ss_pred ecceeEeCCccc-CCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744 15 DETTHEFSNSHE-NDDVSVG----VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~----vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++||.... +.+..+| +++|+|++|||||||++.|++.
T Consensus 3 ~~~~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 3 GEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCEEEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 357899987432 1223333 8999999999999999999854
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.46 E-value=5e-05 Score=60.15 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999854
No 289
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=6.6e-05 Score=59.31 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|+|++|||||||++.|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.44 E-value=0.0003 Score=60.76 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=31.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
-.+++++|++|+||||++..|... ..++++.++..|..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 358999999999999999999654 35889999888764
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.44 E-value=5.3e-05 Score=60.70 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=25.4
Q ss_pred ecceeEeCCcccCCC-----cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 15 DETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~-----~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+|+++.+|+....+. ..-.+++|+|++||||||+.+.|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 467777777554432 2335899999999999999999974
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.44 E-value=5.5e-05 Score=60.65 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|+|++|||||||++.|++.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999853
No 293
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.44 E-value=2.4e-05 Score=70.13 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=38.4
Q ss_pred eEEEecceeEeCCcccCCCc---ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744 11 AVRIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~ 67 (263)
.++++++.+.|+....+.+. .-.+++|+|++|||||||++.|+.. ....++.++..+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 34566677777654444332 3348999999999999999999864 234556555543
No 294
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.43 E-value=5.2e-05 Score=66.63 Aligned_cols=37 Identities=27% Similarity=0.127 Sum_probs=23.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d 75 (263)
-++|+|.||||||||+|+|++. + +.+.+.+++|+...
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~----~-~~v~~~p~tTi~p~ 40 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA----G-IEAANYPFCTIEPN 40 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCceECce
Confidence 4789999999999999999943 3 33445455445433
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.41 E-value=8.2e-05 Score=59.86 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=26.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~ 68 (263)
.+++|+|++|||||||++.|.+... .+++++..+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~-~~i~~v~~d~ 41 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDH 41 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG-GGEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEecCc
Confidence 4799999999999999999984311 1377777664
No 296
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.41 E-value=5.8e-05 Score=67.01 Aligned_cols=34 Identities=26% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccc
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~ 72 (263)
.++|+|+||||||||+|+|+ +.++ .+.+.+++|+
T Consensus 24 kvgIVG~pnvGKSTL~n~Lt----g~~~-~~~~~p~tTi 57 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLT----NSQA-SAENFPFCTI 57 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHH----C--------------
T ss_pred EEEEECCCCCCHHHHHHHHH----CCCc-cccCCCcccc
Confidence 57899999999999999999 4443 3444444444
No 297
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.40 E-value=0.00011 Score=71.66 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.6
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+.-++|+|.+|+|||||+++|+..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999853
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=8e-05 Score=60.86 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+++|+|++|||||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 389999999999999999998653
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.38 E-value=8.7e-05 Score=58.02 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~ 53 (263)
+++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 88999999999999999865
No 300
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.36 E-value=0.00033 Score=62.78 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=39.8
Q ss_pred ecceeEeCCcc-cCCCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 15 DETTHEFSNSH-ENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
+++++.||+.. .++-....+++++|++|+||||++..|... ..+.++.++..|+..
T Consensus 80 ~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 34667777643 111113348889999999999999999764 458899999888653
No 301
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.33 E-value=9.8e-05 Score=57.96 Aligned_cols=22 Identities=45% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.+|+|++|||||||+++|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999963
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.33 E-value=0.00017 Score=62.15 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=43.4
Q ss_pred CCceEEEecceeEeCCccc-------------------C------C-CcceEEEEEEccCCCcHHHHHHHHHcc---CCC
Q 024744 8 PPLAVRIDETTHEFSNSHE-------------------N------D-DVSVGVTVITGFLGAGKSTLVNYILNG---KHG 58 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-------------------~------~-~~~~~vv~i~G~~gaGKSTLin~l~~~---~~~ 58 (263)
.+..|++++|++.|+.... + . ...-.+++|+|++|||||||++.|... ..|
T Consensus 40 ~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 40 LGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp TTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 3557899999999964210 0 1 122238999999999999999999763 223
Q ss_pred -CeEEEEecCCC
Q 024744 59 -KRIAVILNEFG 69 (263)
Q Consensus 59 -~~~~ii~~~~g 69 (263)
.+++++..+..
T Consensus 120 ~~~v~~v~qd~~ 131 (312)
T 3aez_A 120 HPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEGGGG
T ss_pred CCeEEEEecCcc
Confidence 46888887743
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.32 E-value=9.1e-05 Score=60.33 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKH 57 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~ 57 (263)
+++|+|++|||||||++.|++..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999986544
No 304
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=8.2e-05 Score=58.41 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
+++++|+|++|||||||++.|+.. ..|.+.+.+..+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 368999999999999999999865 2355567666553
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.31 E-value=5.5e-05 Score=69.85 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=34.8
Q ss_pred CCCCceEEEecceeEeCCcccCCCcce---E---EEEEEccCCCcHHHHHHHH
Q 024744 6 EDPPLAVRIDETTHEFSNSHENDDVSV---G---VTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---vv~i~G~~gaGKSTLin~l 52 (263)
+.+.++++.+++.+.+++.++++++++ + +++|+|++|||||||++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 7 TSPNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp -------CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 345667778888888888889887665 3 8999999999999999994
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00012 Score=57.78 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3789999999999999999985
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=9.3e-05 Score=59.21 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..+|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999974
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.00013 Score=58.82 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+++|+|++|||||||++.|+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 488999999999999999998754
No 309
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.26 E-value=0.00021 Score=61.33 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=29.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
.+++|+|++|||||||++.|... ..+.++.+...+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 48999999999999999999764 3467787776664
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.23 E-value=7.1e-05 Score=60.80 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++|||||||++.|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999975
No 311
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.23 E-value=0.0002 Score=71.02 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCceEEEec-----ceeEe-CCcccCCCcce------------EEEEEEccCCCcHHHHHHHH
Q 024744 8 PPLAVRIDE-----TTHEF-SNSHENDDVSV------------GVTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 8 ~~~~~~~~~-----~~~~~-~~~~~~~~~~~------------~vv~i~G~~gaGKSTLin~l 52 (263)
..+++++++ |++.| ++..++.++++ .+++|+|++|+|||||++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 356799999 99999 66667766543 48999999999999999998
No 312
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.22 E-value=0.00049 Score=58.81 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=38.8
Q ss_pred ecceeEeCCccc--C-CCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 15 DETTHEFSNSHE--N-DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 15 ~~~~~~~~~~~~--~-~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
+++.+.||+... + -.....+++++|++|+||||+++.|... ..+.++.++..++.
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 345666765431 1 1122458889999999999999999754 34889999988864
No 313
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.21 E-value=0.00018 Score=64.38 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|+|++|||||||+|.|++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.20 E-value=0.00018 Score=57.48 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
No 315
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.20 E-value=0.00023 Score=61.55 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=27.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc----CCCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~----~~~~~~~ii~~~~ 68 (263)
+++|+|++|||||||++.|... ..+.+++++..|.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 8999999999999999998653 1245677777763
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=0.00018 Score=57.22 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHccCC
Q 024744 35 TVITGFLGAGKSTLVNYILNGKH 57 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~~~ 57 (263)
|+|+||+|||||||+++|+...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987644
No 317
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00022 Score=61.07 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
.+++++|++|||||||++.|... ..++++.+...+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 38999999999999999999764 3466777766554
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.18 E-value=0.0002 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++|+|++||||||+++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999998653
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00017 Score=55.94 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.00035 Score=56.01 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=26.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~ 68 (263)
.+++|+|++||||||+.+.|.+..+ .+.++..+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~ 55 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDD 55 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCc
Confidence 4899999999999999999984321 466776663
No 321
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.15 E-value=0.00013 Score=59.65 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=15.5
Q ss_pred EEEEEccCCCcHHHHHHHHH-cc
Q 024744 34 VTVITGFLGAGKSTLVNYIL-NG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~-~~ 55 (263)
+++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 89999999999999999999 64
No 322
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.15 E-value=0.00028 Score=63.64 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.5
Q ss_pred CcceEEEEEEccCCCcHHHHHHHHHc
Q 024744 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 29 ~~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+..+.+|+|+|++++|||||+|.|++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45677999999999999999999985
No 323
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.15 E-value=0.00021 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l 52 (263)
++|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 324
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.14 E-value=2.3e-05 Score=71.11 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=35.3
Q ss_pred CceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++++++||+++|++...- -..=++++|+|++|||||||++.|++.
T Consensus 116 ~~mi~~~nl~~~y~~vsl~-i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 116 HTMKYIYNLHFMLEKIRMS-NFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CTHHHHHHHHHHHHHHHHH-SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred cchhhhhhhhehhhcCceE-eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5689999999999742111 112258999999999999999999864
No 325
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00022 Score=55.02 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 326
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.11 E-value=0.00025 Score=63.75 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.1
Q ss_pred ceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-++++|+ ++|++...+.-..-.+++|+|++|||||||+++|..
T Consensus 5 ~~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 5 VGLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35788899 788775433211235899999999999999999954
No 327
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.10 E-value=0.00025 Score=62.19 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++|||||||+|.|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 7899999999999999999954
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.10 E-value=0.00026 Score=58.47 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++|||||||++.|.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999983
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.09 E-value=0.00033 Score=54.48 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 330
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.08 E-value=0.00027 Score=60.57 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++|||||||+|.|+ .
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-S
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 88999999999999999998 5
No 331
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.08 E-value=0.00027 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|+|++||||||+.+.|.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.07 E-value=0.00024 Score=56.99 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+++|+|++|||||||.+.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998654
No 333
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.00025 Score=56.56 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++|||||||++.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999999975
No 334
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.04 E-value=0.0072 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++.-++|+|..++|||||..+|+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~ 35 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLF 35 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHH
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 335
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00039 Score=61.02 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
.+++|+|++|||||||++.|... ..+.++.+...+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 38999999999999999999764 3466777766554
No 336
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00048 Score=55.11 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=26.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC--CCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~~~ 67 (263)
.+++|+|++|||||||++.|.... .+..+.+...+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 589999999999999999997531 24455555444
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00038 Score=55.72 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 338
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.98 E-value=0.00045 Score=62.93 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
.+++|+|++|||||||++.|... ..++++.+...+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 38999999999999999999764 3466777665553
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.98 E-value=0.00042 Score=53.86 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+|+|.|+|||||||+.+.|.+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 789999999999999999985
No 340
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00014 Score=62.41 Aligned_cols=21 Identities=48% Similarity=0.604 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++|||||||+|.|+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHhcc
Confidence 899999999999999999984
No 341
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.97 E-value=0.00043 Score=55.98 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
+++|+|++|||||||++.|+.. ..+.++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 8999999999999999999753 2356777777654
No 342
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.97 E-value=0.00053 Score=55.13 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=29.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~ 68 (263)
+++|+|++|+|||||++.++. ..+.++.++..+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 899999999999999999987 5577777777665
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.97 E-value=0.00066 Score=57.58 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~ 68 (263)
+++|+|+||+|||||++.|+.. ..|.++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 8999999999999999999764 2355777777664
No 344
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.96 E-value=0.00035 Score=59.73 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++++|++|||||||+|.|...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 8899999999999999999853
No 345
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.93 E-value=6.5e-05 Score=62.39 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=29.9
Q ss_pred EecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744 14 IDETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
++++.+.|+....+.+.++. -++|.|+||+|||||++.|....
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44556666655554433221 28899999999999999998653
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00065 Score=53.43 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=25.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEE
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii 64 (263)
.-.+++|+|++||||||+.+.|... ..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3458899999999999999999753 234444444
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.90 E-value=0.0005 Score=55.69 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.90 E-value=0.00053 Score=53.84 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=24.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEE
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI 64 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii 64 (263)
.+|+|.|++||||||+.+.|.+. ..|..+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 47899999999999999999763 224445444
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.89 E-value=0.00053 Score=54.69 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999985
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.88 E-value=0.0005 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++|||||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999764
No 351
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.87 E-value=0.00091 Score=61.44 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccC-CCCeEEEE
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVI 64 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~-~~~~~~ii 64 (263)
.++|+|++|||||||++.|+... +..++..+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 68999999999999999998763 33444333
No 352
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.87 E-value=7.9e-05 Score=62.84 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred ecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744 15 DETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++.+.|+....+.+.++. -++|.|++|+|||||++.|....
T Consensus 53 ~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 53 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 4455556555444433221 28899999999999999998653
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.0008 Score=53.58 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=24.4
Q ss_pred ccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.....+..+|+|+|++||||||+.+.|.+.
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3334445568999999999999999999753
No 354
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.84 E-value=0.00079 Score=57.74 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
-.+++++|++||||||++..|... ..+.++.++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 358999999999999999999764 34788888887753
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.0006 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 356
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00089 Score=62.79 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=32.2
Q ss_pred ecceeEeCC-cccCCCcceE----------EEEEEccCCCcHHHHHHHHHcc
Q 024744 15 DETTHEFSN-SHENDDVSVG----------VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~----------vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++++|++ ...+++.++. +++|+|++|||||||++.|.+.
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence 667888876 3456665443 5899999999999999999864
No 357
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.82 E-value=9e-05 Score=64.34 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=33.9
Q ss_pred eEEEecceeEeCCcccCCCc------------ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 11 AVRIDETTHEFSNSHENDDV------------SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~------------~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++.++++..||..+++... ....++|.|+||+|||||++.+.+.
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667888888876544332 2257899999999999999999753
No 358
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.82 E-value=0.00067 Score=54.10 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++||||||+.+.|.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999974
No 359
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00059 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00058 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..+.++|+|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345788999999999999999974
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.81 E-value=0.00081 Score=59.02 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++|||||||++.|+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999999976
No 362
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.81 E-value=4.8e-05 Score=62.55 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=33.2
Q ss_pred CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+..++++++...|+. .++ +.-.+++|+|++|||||||+++|..
T Consensus 6 k~~~l~l~~~~~~~~~--~~~-~~~~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 6 KFRSLTLINWNGFFAR--TFD-LDELVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp EEEEEEEEEETTEEEE--EEC-HHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred eeeEEEEEeeecccCC--EEE-EcCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999888865 111 1114788999999999999999974
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.80 E-value=0.00082 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.-..++|+|++|+|||||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3347889999999999999999853
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.00093 Score=57.92 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++|||||||++.|+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.78 E-value=0.00071 Score=56.24 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999973
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.76 E-value=0.00088 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccC
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
-.+++|+|+|||||||+.+.|....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998643
No 367
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.75 E-value=0.00063 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..++|.|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00083 Score=52.60 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++++|++||||||+.+.|.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 369
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.73 E-value=0.00085 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|+|.|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999753
No 370
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.72 E-value=0.00078 Score=57.47 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=40.9
Q ss_pred EEecceeEeCCcccCCCc---ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 13 RIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
..+++++.|+... ++. .-.+++++|++|+||||++..|... ..+.++.++..+...
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 4566777886542 222 2348889999999999999999754 347889888887653
No 371
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.72 E-value=0.0049 Score=53.92 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=50.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
++.|.|+||+|||||+..++.. ..+.++.++..+...... ....- +....++.-.. ....++....+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~----ra~rl--gv~~~~l~i~~-----~~~~e~~l~~~ 131 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV----YAKNL--GVDLKSLLISQ-----PDHGEQALEIV 131 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----HHHHH--TCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH----HHHHc--CCchhhhhhhh-----ccCHHHHHHHH
Confidence 8999999999999999998764 346777787766432111 11100 00000111110 11123344445
Q ss_pred HHHHHhccCCcEEEEcccCCCCc
Q 024744 112 EQLVQRKERLDHILLETTGLANP 134 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p 134 (263)
..++. ...+|+++|+.....-+
T Consensus 132 ~~l~~-~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 132 DELVR-SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHH-TSCCSEEEEECTTTCCC
T ss_pred HHHhh-hcCCCeEEehHhhhhcC
Confidence 55543 36789999987765554
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.72 E-value=0.00078 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|+|++|||||||++.|+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999864
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.72 E-value=0.0013 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|.|++|||||||++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999865
No 374
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.71 E-value=0.00073 Score=59.46 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|+|+||||||||+|+|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999853
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.71 E-value=0.00047 Score=55.27 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=23.9
Q ss_pred EEEEEccCCCcHHHHHHHHHccC--CCCeEEEEe
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK--HGKRIAVIL 65 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~ 65 (263)
+|+|.|++||||||+++.|.... .+.++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 68999999999999999997542 244444443
No 376
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.0009 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..++|+|++||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 377
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.68 E-value=0.0011 Score=50.51 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
.-++.+|+|++||||||++.+|.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999985
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0011 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|.|++||||||+.+.|.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 379
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.00097 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+.++++|++||||||+.+.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999974
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0017 Score=51.52 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeE
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRI 61 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~ 61 (263)
.+|+|+|++||||||+.+.|.+...|.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 37899999999999999999865433333
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.66 E-value=0.0013 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.64 E-value=0.001 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999974
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.63 E-value=0.00054 Score=62.33 Aligned_cols=22 Identities=41% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++|||||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.60 E-value=0.0011 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+|+|+|++||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 386
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.60 E-value=0.00069 Score=58.41 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=28.7
Q ss_pred EEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHH
Q 024744 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
++++| -++|++...+ .+.-++.+|+|++|||||||+.+|.
T Consensus 6 L~i~n-fr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 6 LYLKG-FKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEES-BTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EEEeC-ceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence 56777 4667443222 1233489999999999999999996
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.58 E-value=0.0012 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.++|+|+|+|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 388
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.58 E-value=0.0011 Score=58.29 Aligned_cols=21 Identities=52% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~ 53 (263)
++++|+|++|||||||+++|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999986
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.56 E-value=0.0012 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|+|++||||||+.+.|.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 390
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.56 E-value=0.0013 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|+|++|||||||.+.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999753
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.56 E-value=0.0012 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+++|+|++||||||+.+.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.55 E-value=0.0017 Score=53.10 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG 69 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g 69 (263)
.+++|.|++||||||+++.|.+... +..+ +....++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~ 63 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG 63 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence 4789999999999999999976422 4444 3344444
No 393
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.54 E-value=0.05 Score=42.78 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=49.1
Q ss_pred EEEEEE-ccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744 33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (263)
Q Consensus 33 ~vv~i~-G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 109 (263)
++++|+ +..|+||||+.-.|... ..|.++.++..|+...... ........ ..++.. ....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~---~~~~~~~~---~~~~~~--------~~~~l~~ 67 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN---WSKAGKAA---FDVFTA--------ASEKDVY 67 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH---HHTTSCCS---SEEEEC--------CSHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH---HHhcCCCC---CcEEec--------CcHHHHH
Confidence 456666 68899999999888543 4589999999987642211 11111111 012221 1234444
Q ss_pred HHHHHHHhccCCcEEEEcccCCCC
Q 024744 110 ALEQLVQRKERLDHILLETTGLAN 133 (263)
Q Consensus 110 ~l~~~~~~~~~~d~ilie~~G~~~ 133 (263)
.+..+ ...+|+|++++.+...
T Consensus 68 ~l~~l---~~~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 68 GIRKD---LADYDFAIVDGAGSLS 88 (206)
T ss_dssp THHHH---TTTSSEEEEECCSSSS
T ss_pred HHHHh---cCCCCEEEEECCCCCC
Confidence 44443 2468999999987654
No 394
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.0026 Score=51.81 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=26.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--C------CCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~------~~~~~~ii~~~~ 68 (263)
+++|+|++|||||||+..|+.. . .+..+.++..+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 8999999999999999999863 2 145566666554
No 395
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.52 E-value=0.0014 Score=55.82 Aligned_cols=25 Identities=28% Similarity=0.192 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
...+|+|+|++|||||||.+.|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998654
No 396
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0019 Score=52.69 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=28.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
+++|+|+||+|||||...++.. ..+.++.++..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 8999999999999998777543 34677878777643
No 397
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0014 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
No 398
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.51 E-value=0.0013 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|+|++||||||+.+.|.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999753
No 399
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.50 E-value=0.0014 Score=63.12 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=29.9
Q ss_pred EEEecceeEe---CCcccCCCcce--EEEEEEccCCCcHHHHHHHHHc
Q 024744 12 VRIDETTHEF---SNSHENDDVSV--GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 12 ~~~~~~~~~~---~~~~~~~~~~~--~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.+++..+.. ++..++++.++ .+++|+|++|||||||++.+..
T Consensus 551 i~i~~~rHP~le~~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 551 LQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp EEEEEECCTTGGGTSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEEeECceEccCCceEeeeccCCCcEEEEECCCCCChHHHHHHHHh
Confidence 4455443333 33444555555 4899999999999999999863
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.49 E-value=0.0014 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 401
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.49 E-value=0.0013 Score=57.76 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..++|+|++|||||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999854
No 402
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.48 E-value=0.0013 Score=62.39 Aligned_cols=30 Identities=50% Similarity=0.699 Sum_probs=25.1
Q ss_pred cccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744 24 SHENDDVSVG-----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 24 ~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~ 53 (263)
..++++.++. +++|+|++|||||||++.++
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4678887665 79999999999999998653
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.47 E-value=0.0018 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+|+|+|++||||||+.+.|.+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 358999999999999999999864
No 404
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.47 E-value=0.0018 Score=61.39 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=25.8
Q ss_pred ecceeEe---CCcccCCCcceE-----EEEEEccCCCcHHHHH
Q 024744 15 DETTHEF---SNSHENDDVSVG-----VTVITGFLGAGKSTLV 49 (263)
Q Consensus 15 ~~~~~~~---~~~~~~~~~~~~-----vv~i~G~~gaGKSTLi 49 (263)
+++++.| ...++++++++. +++|+|++|||||||+
T Consensus 19 ~~~~~~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 19 SHMDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ---CEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CCcceEEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4455444 346788888776 7999999999999996
No 405
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0016 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0016 Score=52.37 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.|+|+|++||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999964
No 407
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.45 E-value=0.0027 Score=55.82 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=36.4
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.++|+||+|+++... ..+.+.+.++...... ......++.+||++|.|+++|.+.+.
T Consensus 97 ~p~ilV~NK~DL~~~~~---~~~~~~~~l~~~~~~~--------g~~~~~v~~iSA~~g~gi~~L~~~l~ 155 (368)
T 3h2y_A 97 NKVLLVGNKADLIPKSV---KHDKVKHWMRYSAKQL--------GLKPEDVFLISAAKGQGIAELADAIE 155 (368)
T ss_dssp SCEEEEEECGGGSCTTS---CHHHHHHHHHHHHHHT--------TCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred CcEEEEEEChhcCCccc---CHHHHHHHHHHHHHHc--------CCCcccEEEEeCCCCcCHHHHHhhhh
Confidence 45899999999987542 1233333333211100 00112577899999999999988875
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.43 E-value=0.0012 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++|+|+|++||||||+-+.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.43 E-value=0.0017 Score=50.50 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.++|+|++||||||+.+.|.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
No 410
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.40 E-value=0.0018 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.|+|+|++||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 411
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.40 E-value=0.0018 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+|+|+|++||||||+.+.|.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.39 E-value=0.0011 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999753
No 413
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.39 E-value=0.0019 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+|+|.|++||||||+.+.|.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999753
No 414
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.39 E-value=0.015 Score=49.26 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=31.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
...+|+|+|..|+||||+.-.|... ..|+++.++..|++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3457778899999999999887543 35899999999875
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.38 E-value=0.0032 Score=54.03 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=26.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
+.++++|+||+|||||||...|..... ..+|+.|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 35 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGD 35 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc---cceeecC
Confidence 346899999999999999999986543 2456655
No 416
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=54.70 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
+++.|+||+|||||++.|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999864
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0016 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.36 E-value=0.0019 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 024744 35 TVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~~ 55 (263)
|+|+|++||||||+.+.|.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 419
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.34 E-value=0.0027 Score=53.75 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=34.3
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.++|+||+|+++.+ ..+.+.+.++.. +. +++.+||.+|.|+++|.+.+.
T Consensus 51 kp~ilVlNK~DL~~~~----~~~~~~~~~~~~--------------g~-~~i~iSA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 51 KPRIMLLNKADKADAA----VTQQWKEHFENQ--------------GI-RSLSINSVNGQGLNQIVPASK 101 (282)
T ss_dssp SCEEEEEECGGGSCHH----HHHHHHHHHHTT--------------TC-CEEECCTTTCTTGGGHHHHHH
T ss_pred CCEEEEEECcccCCHH----HHHHHHHHHHhc--------------CC-cEEEEECCCcccHHHHHHHHH
Confidence 4589999999998742 233333333321 11 467799999999998877654
No 420
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.32 E-value=0.0027 Score=50.60 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.6
Q ss_pred cceEEEEEEccCCCcHHHHHHHHHc
Q 024744 30 VSVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 30 ~~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.-..+++|+|.+||||||+.+.|.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999974
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0021 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
-.+++|+|++||||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999974
No 422
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.29 E-value=0.0023 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.+++|+|++||||||+-+.|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.29 E-value=0.0021 Score=59.23 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=36.4
Q ss_pred eEEEecceeEeCC-cccCCCcceE---EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744 11 AVRIDETTHEFSN-SHENDDVSVG---VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (263)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~ 67 (263)
.+++++++..|.. ..++.+ .++ +++|+|++|+|||||++.++.. ..|.++..+..+
T Consensus 257 ~~~~~~l~~g~~~ld~vL~g-~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMCGG-GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp CCCCCEECCSCHHHHHHTTS-SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccccceeecChHHHHHHhCC-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3455666655544 233333 444 8999999999999999999754 335555444443
No 424
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.28 E-value=0.0024 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 425
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.27 E-value=0.0019 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..|+|.|++||||||+.+.|.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999975
No 426
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.26 E-value=0.0026 Score=62.39 Aligned_cols=40 Identities=38% Similarity=0.515 Sum_probs=32.3
Q ss_pred CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~ 53 (263)
.+.+++++++. ..+++.++. +++|+|.+|||||||++.|+
T Consensus 645 ~~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 645 RRQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SSEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred CceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 36799999863 357776554 89999999999999999864
No 427
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.24 E-value=0.0036 Score=54.82 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 024744 33 GVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~ 53 (263)
++++|+|++|+|||||+++|.
T Consensus 27 g~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHH
Confidence 389999999999999999996
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.0026 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
.++|.|++||||||+.+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.23 E-value=0.0016 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++++|+|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
No 430
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.23 E-value=0.0047 Score=54.30 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=37.6
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
.+.++|+||+|+++.+. ..+.+.+.++...... ......++.+||++|.|+++|.+.+..
T Consensus 99 ~piilV~NK~DLl~~~~---~~~~~~~~l~~~~~~~--------g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 99 NPILLVGNKADLLPRSV---KYPKLLRWMRRMAEEL--------GLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp SCEEEEEECGGGSCTTC---CHHHHHHHHHHHHHTT--------TCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCEEEEEEChhcCCCcc---CHHHHHHHHHHHHHHc--------CCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 45889999999987642 1233444433221111 001235788999999999999887753
No 431
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.22 E-value=0.0036 Score=49.42 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
.+++++|++|+||||++-+++.. ..+.++.++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 37889999999999998666543 2467777776654
No 432
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.21 E-value=0.0028 Score=50.83 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
.-++.+|+|++||||||++.+|.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34699999999999999999984
No 433
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.21 E-value=0.0027 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+..+|+|+|++||||||+-+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999865
No 434
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.20 E-value=0.0025 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
++++|+|++||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999974
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.15 E-value=0.003 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..|+|+|+|||||||+.+.|.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
No 436
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.13 E-value=0.0038 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.++|+|.|+|||||+|.-..|.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445889999999999999999975
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.13 E-value=0.0031 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHc
Q 024744 35 TVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 35 v~i~G~~gaGKSTLin~l~~ 54 (263)
|+|+|++||||||+.+.|.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 438
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.11 E-value=0.0026 Score=62.29 Aligned_cols=39 Identities=38% Similarity=0.508 Sum_probs=31.8
Q ss_pred ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~ 53 (263)
+.+++++++. ..++++++. +++|+|.+|||||||++.|+
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6788988863 357776554 89999999999999999864
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.11 E-value=0.0031 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 899999999999999999874
No 440
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0011 Score=58.91 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=23.4
Q ss_pred CcccCCCcceE----EEEEEccCCCcHHHHHHHHH
Q 024744 23 NSHENDDVSVG----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 23 ~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~ 53 (263)
+...+++.++. +++|+|++|||||||++.|.
T Consensus 47 nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHH
T ss_pred cccceeeEEEecCCCcEEEECCCCCCHHHHHHHHH
Confidence 33444444332 89999999999999999983
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.06 E-value=0.0033 Score=55.47 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++|+|++|+|||||++.|.+..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 89999999999999999998643
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.06 E-value=0.0036 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 443
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0032 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHH
Q 024744 32 VGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~ 53 (263)
..+|+|+|++||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4489999999999999999997
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.06 E-value=0.0034 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999985
No 445
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.04 E-value=0.0054 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+.|.|++|+|||||++++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999754
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.02 E-value=0.0059 Score=52.96 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=25.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
++++|+|++|||||||...|..... ..+++.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccc
Confidence 4899999999999999999986432 3566655
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.00 E-value=0.0037 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..|+|.|++||||||+.+.|.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999964
No 448
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.99 E-value=0.0059 Score=49.80 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=29.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.+++++|++|+||||++-.++.. ..|.++.++.+..++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~ 52 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT 52 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence 48899999999999988777543 357888888776654
No 449
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.98 E-value=0.003 Score=61.23 Aligned_cols=39 Identities=36% Similarity=0.532 Sum_probs=31.4
Q ss_pred CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHH
Q 024744 8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNY 51 (263)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~ 51 (263)
+.+.++++++++ ..++++++. +++|+|.+|||||||++.
T Consensus 499 ~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 499 PAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp CSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCC
T ss_pred CCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHH
Confidence 456799999875 256665544 899999999999999996
No 450
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.97 E-value=0.0037 Score=54.21 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.3
Q ss_pred ceEEEEEEccCCCcHHHHHHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
+-++.+|+|++||||||++.+|.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44688999999999999999983
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.97 E-value=0.0048 Score=50.78 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=27.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.+|+|.|++||||||+++.|.+. ..+.++++...+++.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 48999999999999999999654 235553455555554
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.94 E-value=0.0049 Score=55.07 Aligned_cols=24 Identities=46% Similarity=0.581 Sum_probs=21.1
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
...+++++|+|||||||+.++|.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
No 453
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0072 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++.|+|++|||||||++.++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999764
No 454
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.91 E-value=0.0043 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..+.|+|++|+|||||++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999753
No 455
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.91 E-value=0.023 Score=49.85 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=50.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
++.|.|+||+|||||...++.. ..+.++.++..+... ... .....+ .-..++.-..+ ...+.+...+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~--~~~--~a~~~g--~d~~~l~i~~~-----~~~e~~l~~l 144 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL--DPV--YARALG--VNTDELLVSQP-----DNGEQALEIM 144 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH--HHHHTT--CCGGGCEEECC-----SSHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh--hHH--HHHHcC--CCHHHceeecC-----CcHHHHHHHH
Confidence 8889999999999999888654 347788888887532 111 111100 00001110101 1113344455
Q ss_pred HHHHHhccCCcEEEEcccCCCCc
Q 024744 112 EQLVQRKERLDHILLETTGLANP 134 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p 134 (263)
..++. ...+++|+|+..+...+
T Consensus 145 ~~l~~-~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVR-SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHT-TTCCSEEEEECTTTCCC
T ss_pred HHHHh-cCCCCEEEEeChHHhcc
Confidence 55543 36799999988886653
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.89 E-value=0.0048 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 024744 34 VTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~ 54 (263)
+++|.|+|||||+|.-..|.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999975
No 457
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.84 E-value=0.005 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
..|+|.|++||||||+.+.|.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999753
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.82 E-value=0.0034 Score=58.16 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
.+++|+|++|||||||++.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 37899999999999999999753
No 459
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.82 E-value=0.0062 Score=49.15 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=25.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN 66 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~ 66 (263)
.+.+.|.|++|+|||||++.+... ..+.++..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 357889999999999999999764 23455555543
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.80 E-value=0.011 Score=47.68 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=27.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
-.+|+|.|++||||||+++.|.+. ..|.++ +...+++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG 45 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence 358899999999999999999664 335555 44455554
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.79 E-value=0.007 Score=48.98 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=27.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
.+|+|.|++||||||+++.|.+. ..|.+..+...++|.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 47899999999999999999764 234422355566664
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.78 E-value=0.0088 Score=51.80 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
++++|+||+|||||||...|.+... ..+|+-|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP---LEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC---EEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC---CcEEccc
Confidence 5899999999999999999986432 2456655
No 463
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.78 E-value=0.0048 Score=59.65 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=24.5
Q ss_pred CcccCCCcce----EEEEEEccCCCcHHHHHHHHHc
Q 024744 23 NSHENDDVSV----GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 23 ~~~~~~~~~~----~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+..++.+.++ .+++|+|++|||||||++.+..
T Consensus 594 ~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence 3444555444 3899999999999999999863
No 464
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.76 E-value=0.026 Score=49.29 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=49.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l 111 (263)
++.|.|+||+|||||...++.. ..+.++.++..+... . ......- +.-..++.-..+ ...+.+.+.+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~--~--~~~a~~~--g~~~~~l~i~~~-----~~~e~~~~~~ 133 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--D--PIYARKL--GVDIDNLLCSQP-----DTGEQALEIC 133 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C--HHHHHHT--TCCGGGCEEECC-----SSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc--c--HHHHHHc--CCChhheeeeCC-----CCHHHHHHHH
Confidence 8999999999999999888653 346788888876432 1 1111110 000011111101 1112334444
Q ss_pred HHHHHhccCCcEEEEcccCCCCc
Q 024744 112 EQLVQRKERLDHILLETTGLANP 134 (263)
Q Consensus 112 ~~~~~~~~~~d~ilie~~G~~~p 134 (263)
..+.. ...+++|+|+..+...+
T Consensus 134 ~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHh-ccCCCEEEEcCHHHhcc
Confidence 44443 36799999988776554
No 465
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.76 E-value=0.13 Score=43.54 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=30.0
Q ss_pred ceEEEEEEcc-CCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744 31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (263)
Q Consensus 31 ~~~vv~i~G~-~gaGKSTLin~l~~~--~~~~~~~ii~~~~ 68 (263)
...+++|+|. +|+||||+.-.|... ..|+|+.+|..|+
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3457888885 899999998888543 4589999999886
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.75 E-value=0.0056 Score=52.23 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=31.9
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.++|+||+|+.+..+. ...+.+.+..+..+ . +++.+||++|.|+++|...+.
T Consensus 111 ~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g--~-------------~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEEEK-KELERWISIYRDAG--Y-------------DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT--C-------------EEEECCTTTCTTHHHHHHHTT
T ss_pred CCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC--C-------------eEEEEECCCCCCHHHHHhhcc
Confidence 458999999999865210 00233333333321 2 356778888888777776654
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.74 E-value=0.0058 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 024744 33 GVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~ 54 (263)
.+++|+|++||||||+.+.|.+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.73 E-value=0.01 Score=47.52 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
.++|+|++|+|||||...|... +. .+++.|
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD 65 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR--GH--RLIADD 65 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence 5889999999999999999854 22 455555
No 469
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.72 E-value=0.0067 Score=59.55 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHH
Q 024744 34 VTVITGFLGAGKSTLVNYI 52 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l 52 (263)
+++|+|++|||||||++.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999998
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.69 E-value=0.0089 Score=51.16 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=25.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
++++|+||+|||||||...|.+... ..+++.|
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~---~~iis~D 42 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP---VELISVD 42 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC---EEEEECC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC---CcEEecc
Confidence 5789999999999999999986532 2456654
No 471
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.66 E-value=0.0059 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~ 55 (263)
-+.|.|+||+|||||.+++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.63 E-value=0.0064 Score=49.61 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--C-CCCeEEEEecCCCc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE 70 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~-~~~~~~ii~~~~g~ 70 (263)
+-.+|++.|.+||||||+.+.|.+. . .|.++.++..+|+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 3458999999999999999999753 2 35556553556654
No 473
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0029 Score=53.73 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=23.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~ 67 (263)
.+|+|+|++||||||+.+.|.+. ..+.++.++..|
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 58999999999999999999753 123446666655
No 474
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.61 E-value=0.0043 Score=60.72 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.3
Q ss_pred cccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744 24 SHENDDVSVG-----VTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 24 ~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~ 53 (263)
..+..++++. +++|+||+|||||||++.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 3444454442 89999999999999999874
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.55 E-value=0.01 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++++|+|++|||||||-..|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 476
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.55 E-value=0.0087 Score=49.99 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=33.0
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 227 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~ 227 (263)
++.++|+||+|+++.+ ..+.+.+.++.. +. ++ .+||.+|.|+++|.+.+..
T Consensus 47 k~~iivlNK~DL~~~~----~~~~~~~~~~~~--g~-------------~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 47 KETIILLNKVDIADEK----TTKKWVEFFKKQ--GK-------------RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp SEEEEEEECGGGSCHH----HHHHHHHHHHHT--TC-------------CE-EECCTTSCHHHHHHHHCCC
T ss_pred CCcEEEEECccCCCHH----HHHHHHHHHHHc--CC-------------eE-EEECCCCcCHHHHHHHHHH
Confidence 5589999999999753 233444444332 11 24 6788888888877766544
No 477
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.53 E-value=0.011 Score=52.15 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=27.7
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~ 67 (263)
.-+.++|+|++|||||||++.|+.. ..+.++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457889999999999999999764 346666665443
No 478
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.53 E-value=0.0026 Score=58.21 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=29.0
Q ss_pred ecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744 15 DETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+++...|.+...+.+.+.. -++|.|+||+|||||+++|....
T Consensus 44 ~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 44 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444455555555543322 38899999999999999998653
No 479
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.49 E-value=0.01 Score=51.69 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=29.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
++.|.|+||+|||||...++.. ..+.++.++..+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 8999999999999998888643 34778888887743
No 480
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.47 E-value=0.014 Score=49.96 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
+++|+|+||+|||||...++.. ..+.++.+++.+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 8999999999999999888643 34678888888754
No 481
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0059 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.9
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
+.|.+.|.|++|+|||||++.+.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445589999999999999999976
No 482
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.44 E-value=0.0087 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.++|.|++|+|||||++.+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999753
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.44 E-value=0.011 Score=47.45 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=26.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~ 70 (263)
.+|+|-|..||||||+++.|.+. ..|.++ +...+||.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v-~~~~eP~~ 40 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPGG 40 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE-EEeeCCCC
Confidence 47889999999999999998654 234444 45556664
No 484
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.44 E-value=0.006 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
+.+.|+|++|+|||||++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999753
No 485
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.44 E-value=0.0078 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
|.++|+|++|+|||||++.+...
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999865
No 486
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.29 E-value=0.015 Score=50.34 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~ 70 (263)
+++|+|+||+|||||...++.. ..+.++++++.+...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA 86 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 8999999999999999888653 357889999988653
No 487
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.28 E-value=0.011 Score=50.40 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=34.8
Q ss_pred EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744 157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 226 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~ 226 (263)
++.+||+||+|+.+.. ..++..+..+..+.. .+++.+||++|.|++++..++.
T Consensus 116 ~piilv~NK~DL~~~~----~v~~~~~~~~~~~~~-------------~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 116 LETVMVINKMDLYDED----DLRKVRELEEIYSGL-------------YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CEEEEEECCGGGCCHH----HHHHHHHHHHHHTTT-------------SCEEECCTTTCTTHHHHHHHHS
T ss_pred CCEEEEEeHHHcCCch----hHHHHHHHHHHHhhh-------------CcEEEEECCCCcCHHHHHHHhc
Confidence 4589999999998642 122233333333210 2467899999999998887765
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.27 E-value=0.0091 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.5
Q ss_pred ceEEEEEEccCCCcHHHHHHHHH
Q 024744 31 SVGVTVITGFLGAGKSTLVNYIL 53 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~ 53 (263)
+-++.+|+|++||||||++.+|.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999999984
No 489
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.26 E-value=0.013 Score=52.87 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG 69 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g 69 (263)
+++|+|+||+|||||+..++.. ..|.++.+++.+..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 8999999999999999998664 23678888888754
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.26 E-value=0.012 Score=46.02 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=23.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~ 68 (263)
-++|+|++|+|||||.-.|+.. |. .++.+|.
T Consensus 18 gvli~G~SGaGKStlal~L~~r--G~--~lvaDD~ 48 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR--GH--QLVCDDV 48 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT--TC--EEEESSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHc--CC--eEecCCE
Confidence 5779999999999999999863 32 3455553
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.011 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+|+|.|.+||||||+.+.|.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998654
No 492
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.21 E-value=0.0072 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccC
Q 024744 34 VTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
.+++.||||+||||+..+|+...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 493
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.17 E-value=0.0045 Score=53.02 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.2
Q ss_pred EeeEEEEecCCCCCCC
Q 024744 157 ITDVVILNKVDLVSPE 172 (263)
Q Consensus 157 i~~iivlNK~Dl~~~~ 172 (263)
++.+||+||+||.++.
T Consensus 118 ~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 118 IQPIICITKMDLIEDQ 133 (307)
T ss_dssp CEEEEEEECGGGCCCH
T ss_pred CCEEEEEECCccCchh
Confidence 3479999999999763
No 494
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.15 E-value=0.011 Score=52.47 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=25.5
Q ss_pred EEEEEccCCCcHHHHHHHHHc--cC------CCCeEEEEecCC
Q 024744 34 VTVITGFLGAGKSTLVNYILN--GK------HGKRIAVILNEF 68 (263)
Q Consensus 34 vv~i~G~~gaGKSTLin~l~~--~~------~~~~~~ii~~~~ 68 (263)
++.|+|++|+|||||+..|+- .. .+.++.++..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 899999999999999997642 11 245566666553
No 495
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.15 E-value=0.017 Score=45.90 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
.+.+++|+.||||||.+-.++.. ..|.++.++.+...
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID 47 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 48899999999999988777654 35888888875543
No 496
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.0086 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.4
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNG 55 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~ 55 (263)
++|.+++.|++|+||||+++.+.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4455899999999999999999754
No 497
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.13 E-value=0.015 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.6
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHc
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILN 54 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~ 54 (263)
..+.++|+|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 356788999999999999998864
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.11 E-value=0.0076 Score=50.08 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.2
Q ss_pred ceEEEEEEccCCCcHHHHHHHHHccC
Q 024744 31 SVGVTVITGFLGAGKSTLVNYILNGK 56 (263)
Q Consensus 31 ~~~vv~i~G~~gaGKSTLin~l~~~~ 56 (263)
+..+|+|.|.+||||||+.+.|.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34589999999999999999998654
No 499
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.07 E-value=0.16 Score=42.35 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=30.5
Q ss_pred ceEEEEEEc-cCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744 31 SVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (263)
Q Consensus 31 ~~~vv~i~G-~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g 69 (263)
...+++|+| .+|+||||+.-.|... ..|+|+.+|..|+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345788887 5899999999888543 45899999998864
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.04 E-value=0.014 Score=51.85 Aligned_cols=32 Identities=38% Similarity=0.456 Sum_probs=25.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (263)
Q Consensus 33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~ 67 (263)
++++|+|++|||||||...|.....+ .+++.|
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~---~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG---EVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE---EEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC---eEeecC
Confidence 58899999999999999999864322 456654
Done!