Query 024748
Match_columns 263
No_of_seqs 325 out of 2734
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1491 Predicted GTP-binding 100.0 8E-41 1.7E-45 290.6 20.3 244 10-253 6-255 (391)
2 COG0012 Predicted GTPase, prob 100.0 5.8E-39 1.3E-43 284.6 20.0 229 24-253 2-236 (372)
3 cd01900 YchF YchF subfamily. 100.0 1.5E-36 3.3E-41 264.8 18.9 222 27-250 1-222 (274)
4 PRK09601 GTP-binding protein Y 100.0 6.3E-36 1.4E-40 268.8 21.2 228 24-253 2-229 (364)
5 PTZ00258 GTP-binding protein; 100.0 1.4E-35 3.1E-40 269.3 22.5 240 14-253 11-251 (390)
6 TIGR00092 GTP-binding protein 100.0 3.4E-35 7.3E-40 264.1 21.6 227 24-253 2-229 (368)
7 PRK09602 translation-associate 99.9 1.9E-25 4.2E-30 204.8 19.3 209 25-234 2-229 (396)
8 cd01899 Ygr210 Ygr210 subfamil 99.9 1.5E-24 3.3E-29 193.6 18.3 207 27-233 1-225 (318)
9 COG1159 Era GTPase [General fu 99.9 9.2E-25 2E-29 188.7 7.4 189 26-238 8-221 (298)
10 COG1134 TagH ABC-type polysacc 99.9 5E-25 1.1E-29 185.7 1.8 181 7-217 36-238 (249)
11 COG4152 ABC-type uncharacteriz 99.9 6.2E-24 1.3E-28 178.5 5.9 185 9-207 13-215 (300)
12 COG1120 FepC ABC-type cobalami 99.9 2.5E-23 5.5E-28 178.9 3.1 178 11-207 15-224 (258)
13 COG1131 CcmA ABC-type multidru 99.9 3.4E-23 7.4E-28 183.5 0.2 184 10-207 17-222 (293)
14 COG0411 LivG ABC-type branched 99.9 3.5E-23 7.6E-28 174.3 -0.2 182 11-207 17-235 (250)
15 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.2E-22 6.9E-27 171.4 4.8 176 12-207 18-223 (254)
16 COG4555 NatA ABC-type Na+ tran 99.8 1.5E-22 3.3E-27 165.7 0.9 179 12-207 16-218 (245)
17 COG3842 PotA ABC-type spermidi 99.8 1.5E-21 3.3E-26 174.8 7.0 178 10-207 17-222 (352)
18 PRK13537 nodulation ABC transp 99.8 6.9E-22 1.5E-26 176.3 2.0 178 11-207 20-223 (306)
19 COG1126 GlnQ ABC-type polar am 99.8 3.5E-21 7.6E-26 159.5 5.2 176 10-205 14-219 (240)
20 COG1135 AbcC ABC-type metal io 99.8 6.7E-21 1.5E-25 165.3 5.0 176 10-207 18-227 (339)
21 PRK13536 nodulation factor exp 99.8 2.6E-21 5.7E-26 174.7 1.9 178 11-207 54-257 (340)
22 COG1118 CysA ABC-type sulfate/ 99.8 1.2E-20 2.6E-25 163.4 5.8 177 11-207 15-223 (345)
23 COG1125 OpuBA ABC-type proline 99.8 1.1E-20 2.4E-25 159.9 4.0 177 10-206 13-220 (309)
24 TIGR01188 drrA daunorubicin re 99.8 7.6E-21 1.6E-25 169.4 2.9 178 11-207 6-209 (302)
25 COG1137 YhbG ABC-type (unclass 99.8 1E-21 2.2E-26 160.8 -2.6 176 10-207 16-224 (243)
26 COG1116 TauB ABC-type nitrate/ 99.8 1.6E-20 3.4E-25 159.3 4.5 168 11-198 16-207 (248)
27 COG3839 MalK ABC-type sugar tr 99.8 1.3E-20 2.9E-25 167.8 3.7 177 13-207 18-219 (338)
28 COG4559 ABC-type hemin transpo 99.8 6.9E-20 1.5E-24 151.3 7.5 177 13-206 16-225 (259)
29 COG1127 Ttg2A ABC-type transpo 99.8 3.9E-20 8.5E-25 155.5 4.0 185 14-217 24-244 (263)
30 COG3638 ABC-type phosphate/pho 99.8 1.6E-19 3.4E-24 151.5 6.9 191 11-216 17-242 (258)
31 COG4586 ABC-type uncharacteriz 99.8 1E-19 2.2E-24 155.4 5.2 180 12-207 38-242 (325)
32 TIGR03522 GldA_ABC_ATP gliding 99.8 2.9E-20 6.3E-25 165.6 1.4 177 11-207 15-217 (301)
33 PRK15494 era GTPase Era; Provi 99.8 6.7E-19 1.4E-23 159.2 9.4 209 9-238 30-265 (339)
34 COG1122 CbiO ABC-type cobalt t 99.8 1.2E-19 2.5E-24 155.5 3.6 177 11-206 17-223 (235)
35 PRK09536 btuD corrinoid ABC tr 99.8 6.4E-20 1.4E-24 168.7 2.1 177 11-206 16-223 (402)
36 cd03261 ABC_Org_Solvent_Resist 99.8 8.2E-20 1.8E-24 156.9 2.5 177 11-206 13-221 (235)
37 TIGR01288 nodI ATP-binding ABC 99.8 7.6E-20 1.6E-24 163.0 1.8 177 11-206 17-219 (303)
38 TIGR02314 ABC_MetN D-methionin 99.8 5.2E-20 1.1E-24 166.3 0.7 177 11-206 18-225 (343)
39 PRK11650 ugpC glycerol-3-phosp 99.8 8.1E-20 1.8E-24 166.0 1.7 177 11-206 17-219 (356)
40 COG3840 ThiQ ABC-type thiamine 99.8 8.2E-19 1.8E-23 141.8 6.7 170 17-207 18-215 (231)
41 COG1124 DppF ABC-type dipeptid 99.8 6E-19 1.3E-23 148.7 6.2 179 12-206 21-226 (252)
42 cd03226 ABC_cobalt_CbiO_domain 99.8 1.7E-19 3.6E-24 151.9 2.8 169 11-200 13-204 (205)
43 cd03259 ABC_Carb_Solutes_like 99.8 1.7E-19 3.6E-24 152.7 2.8 174 11-203 13-212 (213)
44 COG0410 LivF ABC-type branched 99.8 1.3E-19 2.8E-24 151.7 1.6 176 11-207 16-222 (237)
45 TIGR02315 ABC_phnC phosphonate 99.8 7.6E-19 1.6E-23 151.6 6.4 177 11-206 15-230 (243)
46 TIGR01186 proV glycine betaine 99.8 1.2E-19 2.7E-24 164.9 1.5 177 11-206 6-214 (363)
47 cd03265 ABC_DrrA DrrA is the A 99.8 1.9E-19 4.1E-24 153.2 2.6 176 11-205 13-215 (220)
48 PRK11432 fbpC ferric transport 99.8 1.4E-19 3.1E-24 164.1 1.8 177 11-206 19-221 (351)
49 TIGR03265 PhnT2 putative 2-ami 99.8 1.3E-19 2.8E-24 164.5 1.5 176 12-206 18-219 (353)
50 TIGR00960 3a0501s02 Type II (G 99.8 3.1E-19 6.8E-24 151.3 3.7 171 11-200 16-216 (216)
51 PRK13637 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 160.1 1.5 179 11-206 20-229 (287)
52 TIGR00436 era GTP-binding prot 99.8 1.4E-18 3E-23 152.5 7.5 192 26-238 2-213 (270)
53 PRK11153 metN DL-methionine tr 99.8 1.5E-19 3.3E-24 163.7 1.3 177 11-206 18-225 (343)
54 COG4175 ProV ABC-type proline/ 99.8 1.1E-18 2.4E-23 151.7 6.2 173 14-206 44-249 (386)
55 cd03218 ABC_YhbG The ABC trans 99.8 3.5E-19 7.5E-24 152.6 3.0 177 11-206 13-217 (232)
56 cd03256 ABC_PhnC_transporter A 99.8 6.4E-19 1.4E-23 151.8 4.7 177 11-206 14-229 (241)
57 TIGR03258 PhnT 2-aminoethylpho 99.7 2.1E-19 4.6E-24 163.5 1.7 177 11-206 18-223 (362)
58 cd03219 ABC_Mj1267_LivG_branch 99.7 3.1E-19 6.6E-24 153.3 2.5 176 11-205 13-226 (236)
59 cd03224 ABC_TM1139_LivF_branch 99.7 4E-19 8.6E-24 151.2 3.0 177 11-205 13-215 (222)
60 PRK13643 cbiO cobalt transport 99.7 2.2E-19 4.8E-24 159.0 1.1 177 12-207 20-229 (288)
61 cd03258 ABC_MetN_methionine_tr 99.7 4.5E-19 9.7E-24 152.1 2.8 175 12-205 19-224 (233)
62 PRK10851 sulfate/thiosulfate t 99.7 3.2E-19 7E-24 162.0 2.0 176 12-206 16-221 (353)
63 TIGR01184 ntrCD nitrate transp 99.7 6.3E-19 1.4E-23 151.1 3.6 173 15-206 2-199 (230)
64 cd03269 ABC_putative_ATPase Th 99.7 5.9E-19 1.3E-23 149.0 3.3 174 11-203 13-209 (210)
65 PRK11000 maltose/maltodextrin 99.7 2.9E-19 6.2E-24 163.3 1.5 177 11-206 16-218 (369)
66 PRK13636 cbiO cobalt transport 99.7 4E-19 8.6E-24 156.9 2.1 178 11-207 19-227 (283)
67 PRK12298 obgE GTPase CgtA; Rev 99.7 3.7E-17 8E-22 150.0 15.0 188 11-217 146-360 (390)
68 cd03266 ABC_NatA_sodium_export 99.7 4.7E-19 1E-23 150.4 2.3 172 12-202 19-216 (218)
69 cd03257 ABC_NikE_OppD_transpor 99.7 5.4E-19 1.2E-23 150.9 2.7 173 12-202 19-226 (228)
70 PRK13647 cbiO cobalt transport 99.7 3.5E-19 7.6E-24 156.6 1.5 177 11-206 18-222 (274)
71 cd03296 ABC_CysA_sulfate_impor 99.7 5E-19 1.1E-23 152.5 2.5 177 11-206 15-221 (239)
72 COG1129 MglA ABC-type sugar tr 99.7 7.7E-19 1.7E-23 163.0 3.6 175 11-205 21-228 (500)
73 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.9E-19 8.6E-24 151.2 1.4 176 11-205 17-217 (220)
74 cd03301 ABC_MalK_N The N-termi 99.7 6E-19 1.3E-23 149.2 2.5 174 11-203 13-212 (213)
75 PRK13651 cobalt transporter AT 99.7 4.3E-19 9.3E-24 158.2 1.6 178 11-206 20-249 (305)
76 PRK09493 glnQ glutamine ABC tr 99.7 6.6E-19 1.4E-23 151.8 2.7 178 11-207 14-221 (240)
77 cd03225 ABC_cobalt_CbiO_domain 99.7 9.2E-19 2E-23 147.9 3.4 170 11-199 14-211 (211)
78 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 1.1E-18 2.4E-23 148.2 3.8 169 11-199 17-217 (218)
79 cd03268 ABC_BcrA_bacitracin_re 99.7 7.6E-19 1.7E-23 148.1 2.8 172 11-203 13-207 (208)
80 cd03298 ABC_ThiQ_thiamine_tran 99.7 1.5E-18 3.2E-23 146.7 4.6 168 16-202 16-209 (211)
81 PRK13652 cbiO cobalt transport 99.7 5.4E-19 1.2E-23 155.6 1.9 178 11-207 17-223 (277)
82 PRK13634 cbiO cobalt transport 99.7 4E-19 8.7E-24 157.4 1.1 178 11-206 20-230 (290)
83 PRK13641 cbiO cobalt transport 99.7 5E-19 1.1E-23 156.6 1.7 178 11-206 20-229 (287)
84 cd03263 ABC_subfamily_A The AB 99.7 7.9E-19 1.7E-23 149.3 2.6 175 11-205 15-215 (220)
85 TIGR03410 urea_trans_UrtE urea 99.7 5E-19 1.1E-23 151.5 1.4 177 11-206 13-216 (230)
86 PRK11614 livF leucine/isoleuci 99.7 7.1E-19 1.5E-23 151.3 2.3 178 11-206 18-221 (237)
87 cd03260 ABC_PstB_phosphate_tra 99.7 1.1E-18 2.4E-23 149.1 3.5 182 11-206 13-224 (227)
88 PRK10895 lipopolysaccharide AB 99.7 1.1E-18 2.3E-23 150.5 3.4 177 11-206 16-221 (241)
89 TIGR02673 FtsE cell division A 99.7 1.1E-18 2.5E-23 147.6 3.4 170 11-199 15-214 (214)
90 PRK10070 glycine betaine trans 99.7 4.4E-19 9.5E-24 163.1 0.7 175 13-206 43-249 (400)
91 PRK09452 potA putrescine/sperm 99.7 5.6E-19 1.2E-23 161.4 1.3 176 12-206 28-229 (375)
92 TIGR02142 modC_ABC molybdenum 99.7 1.1E-18 2.3E-23 158.8 3.0 172 16-206 15-216 (354)
93 PRK11231 fecE iron-dicitrate t 99.7 1.9E-18 4.2E-23 150.3 4.3 177 11-206 15-222 (255)
94 COG1117 PstB ABC-type phosphat 99.7 5.9E-18 1.3E-22 140.1 6.8 185 10-206 19-232 (253)
95 cd03292 ABC_FtsE_transporter F 99.7 1.3E-18 2.8E-23 147.3 2.9 170 11-199 14-213 (214)
96 PRK11607 potG putrescine trans 99.7 7.7E-19 1.7E-23 160.7 1.6 175 12-206 33-234 (377)
97 cd03235 ABC_Metallic_Cations A 99.7 3.2E-18 6.9E-23 144.9 5.1 169 11-198 12-208 (213)
98 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.1E-18 2.3E-23 153.1 2.3 176 12-206 38-245 (269)
99 PRK13646 cbiO cobalt transport 99.7 6.3E-19 1.4E-23 155.9 0.8 178 11-206 20-230 (286)
100 PRK11831 putative ABC transpor 99.7 1.1E-18 2.4E-23 153.0 2.3 177 11-206 20-228 (269)
101 cd03262 ABC_HisP_GlnQ_permease 99.7 2.3E-18 5E-23 145.6 4.2 171 11-200 13-213 (213)
102 PRK11264 putative amino-acid A 99.7 2.4E-18 5.2E-23 149.1 4.4 176 11-205 16-227 (250)
103 COG0536 Obg Predicted GTPase [ 99.7 5.3E-17 1.2E-21 142.6 12.6 128 8-158 143-270 (369)
104 PRK11247 ssuB aliphatic sulfon 99.7 3.4E-18 7.3E-23 149.0 4.9 173 11-206 25-218 (257)
105 PRK11300 livG leucine/isoleuci 99.7 1.9E-18 4.1E-23 150.1 3.3 177 11-206 18-238 (255)
106 COG3845 ABC-type uncharacteriz 99.7 2.2E-18 4.7E-23 157.6 3.6 177 12-203 18-221 (501)
107 PRK13638 cbiO cobalt transport 99.7 1.8E-18 3.8E-23 151.9 2.8 177 11-206 14-220 (271)
108 TIGR03873 F420-0_ABC_ATP propo 99.7 2.8E-18 6E-23 149.3 4.0 177 11-206 14-221 (256)
109 COG1101 PhnK ABC-type uncharac 99.7 3.1E-18 6.7E-23 141.9 4.0 184 3-203 11-230 (263)
110 PRK13639 cbiO cobalt transport 99.7 1E-18 2.2E-23 153.7 1.2 178 11-207 15-222 (275)
111 cd03267 ABC_NatA_like Similar 99.7 1.5E-18 3.3E-23 149.3 2.2 174 11-203 34-235 (236)
112 PRK13650 cbiO cobalt transport 99.7 1.3E-18 2.7E-23 153.4 1.8 176 11-206 20-224 (279)
113 PRK10575 iron-hydroxamate tran 99.7 3.2E-18 6.9E-23 149.7 4.1 177 11-206 24-232 (265)
114 PRK10908 cell division protein 99.7 2.9E-18 6.2E-23 146.1 3.6 173 11-202 15-217 (222)
115 TIGR03411 urea_trans_UrtD urea 99.7 3.2E-18 7E-23 147.6 3.9 176 11-206 15-226 (242)
116 cd03295 ABC_OpuCA_Osmoprotecti 99.7 2.3E-18 4.9E-23 148.7 2.8 178 11-205 14-219 (242)
117 PRK13644 cbiO cobalt transport 99.7 1.2E-18 2.7E-23 153.1 1.1 176 11-206 15-219 (274)
118 PRK13548 hmuV hemin importer A 99.7 3.6E-18 7.7E-23 148.9 3.9 177 11-206 15-225 (258)
119 PRK11124 artP arginine transpo 99.7 3.1E-18 6.7E-23 147.7 3.1 177 11-206 15-225 (242)
120 PRK10771 thiQ thiamine transpo 99.7 3.3E-18 7.1E-23 146.7 3.2 172 16-206 17-214 (232)
121 PRK13649 cbiO cobalt transport 99.7 1.8E-18 4E-23 152.4 1.5 178 11-206 20-229 (280)
122 PRK10253 iron-enterobactin tra 99.7 4.4E-18 9.6E-23 148.9 3.9 177 11-206 20-228 (265)
123 TIGR03415 ABC_choXWV_ATP choli 99.7 1.4E-18 3.1E-23 158.8 0.8 176 12-206 38-249 (382)
124 cd03297 ABC_ModC_molybdenum_tr 99.7 4.2E-18 9.1E-23 144.3 3.6 168 16-203 16-213 (214)
125 cd03215 ABC_Carb_Monos_II This 99.7 3.9E-18 8.5E-23 141.1 3.2 151 13-200 15-182 (182)
126 cd03264 ABC_drug_resistance_li 99.7 2.7E-18 5.8E-23 145.1 2.1 171 12-203 14-210 (211)
127 TIGR03740 galliderm_ABC gallid 99.7 3.1E-18 6.7E-23 146.0 2.5 176 11-207 13-209 (223)
128 TIGR01277 thiQ thiamine ABC tr 99.7 5.7E-18 1.2E-22 143.4 3.9 173 14-205 14-212 (213)
129 TIGR02769 nickel_nikE nickel i 99.7 4.6E-18 1E-22 148.7 3.4 179 10-206 23-235 (265)
130 PRK13635 cbiO cobalt transport 99.7 2.9E-18 6.2E-23 151.2 2.0 176 11-206 20-224 (279)
131 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 3.5E-18 7.7E-23 146.9 2.5 176 11-206 14-216 (236)
132 COG4525 TauB ABC-type taurine 99.7 1.7E-17 3.6E-22 135.7 6.1 173 11-203 18-216 (259)
133 PRK11144 modC molybdate transp 99.7 5E-18 1.1E-22 154.3 3.4 168 16-206 16-213 (352)
134 PRK10619 histidine/lysine/argi 99.7 3.1E-18 6.6E-23 149.2 1.8 178 11-206 18-236 (257)
135 cd03300 ABC_PotA_N PotA is an 99.7 6.4E-18 1.4E-22 145.0 3.6 175 12-205 14-214 (232)
136 PRK13631 cbiO cobalt transport 99.7 3.2E-18 7E-23 153.5 1.8 178 11-206 39-260 (320)
137 PRK15439 autoinducer 2 ABC tra 99.7 5.5E-18 1.2E-22 161.2 3.4 176 11-207 24-225 (510)
138 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 8.4E-18 1.8E-22 144.6 4.1 175 11-205 16-220 (238)
139 PRK14250 phosphate ABC transpo 99.7 6.9E-18 1.5E-22 145.6 3.6 175 11-205 16-215 (241)
140 COG2884 FtsE Predicted ATPase 99.7 5.2E-18 1.1E-22 138.0 2.5 174 11-204 15-219 (223)
141 PRK11629 lolD lipoprotein tran 99.7 4.4E-18 9.6E-23 146.0 2.2 175 11-205 22-228 (233)
142 TIGR03005 ectoine_ehuA ectoine 99.7 4.9E-18 1.1E-22 147.4 2.5 177 11-206 13-231 (252)
143 PRK15112 antimicrobial peptide 99.7 4.9E-18 1.1E-22 148.8 2.3 178 11-206 26-234 (267)
144 COG1136 SalX ABC-type antimicr 99.7 7.4E-18 1.6E-22 142.4 3.2 168 11-199 18-219 (226)
145 cd03229 ABC_Class3 This class 99.7 1.1E-17 2.4E-22 137.9 4.1 149 11-198 13-177 (178)
146 cd03233 ABC_PDR_domain1 The pl 99.7 8E-18 1.7E-22 141.5 3.2 161 10-203 19-201 (202)
147 PRK14247 phosphate ABC transpo 99.7 7E-18 1.5E-22 146.2 2.9 185 11-206 16-229 (250)
148 PRK11248 tauB taurine transpor 99.7 5.8E-18 1.3E-22 147.3 2.4 176 11-205 14-214 (255)
149 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 7.5E-18 1.6E-22 143.9 3.0 170 11-203 35-223 (224)
150 cd03234 ABCG_White The White s 99.7 6.3E-18 1.4E-22 144.4 2.5 175 10-203 19-225 (226)
151 cd03213 ABCG_EPDR ABCG transpo 99.7 1.4E-17 3.1E-22 139.2 4.4 159 11-203 22-193 (194)
152 PRK13633 cobalt transporter AT 99.7 4.1E-18 8.8E-23 150.3 1.1 176 11-206 23-228 (280)
153 PRK09700 D-allose transporter 99.7 1.1E-17 2.4E-22 159.1 4.0 178 11-207 18-230 (510)
154 PRK10762 D-ribose transporter 99.7 9.9E-18 2.1E-22 159.1 3.5 177 11-206 17-225 (501)
155 TIGR00972 3a0107s01c2 phosphat 99.7 7.6E-18 1.7E-22 145.8 2.5 178 12-206 15-227 (247)
156 TIGR02770 nickel_nikD nickel i 99.7 8.9E-18 1.9E-22 143.9 2.9 177 14-206 2-210 (230)
157 PRK13546 teichoic acids export 99.7 9.5E-18 2.1E-22 146.7 3.1 176 7-206 33-227 (264)
158 TIGR01257 rim_protein retinal- 99.7 5.6E-18 1.2E-22 178.9 1.9 178 11-207 1952-2155(2272)
159 PRK03695 vitamin B12-transport 99.7 1.1E-17 2.4E-22 145.0 3.5 176 13-206 11-217 (248)
160 PRK15079 oligopeptide ABC tran 99.7 3E-18 6.4E-23 154.4 -0.2 178 11-206 34-246 (331)
161 TIGR02211 LolD_lipo_ex lipopro 99.7 9.2E-18 2E-22 142.8 2.6 171 11-201 18-220 (221)
162 TIGR00968 3a0106s01 sulfate AB 99.7 8.1E-18 1.8E-22 144.8 2.2 176 11-205 13-214 (237)
163 PRK13645 cbiO cobalt transport 99.7 3.7E-18 8E-23 151.2 0.1 177 12-206 25-235 (289)
164 PRK13547 hmuV hemin importer A 99.7 1.9E-17 4.1E-22 145.5 4.5 177 11-206 14-239 (272)
165 TIGR01978 sufC FeS assembly AT 99.7 9.1E-18 2E-22 144.7 2.5 180 11-206 13-229 (243)
166 PRK09984 phosphonate/organopho 99.7 2.2E-17 4.8E-22 144.2 4.8 178 11-207 17-238 (262)
167 TIGR03771 anch_rpt_ABC anchore 99.7 2.9E-17 6.2E-22 140.2 5.3 167 20-206 2-196 (223)
168 PRK13549 xylose transporter AT 99.7 1.5E-17 3.2E-22 158.1 3.8 178 11-207 18-228 (506)
169 PRK10982 galactose/methyl gala 99.7 1.4E-17 3.1E-22 157.7 3.3 177 11-206 11-218 (491)
170 PRK10584 putative ABC transpor 99.7 9.9E-18 2.1E-22 143.3 1.8 170 12-201 24-225 (228)
171 cd03251 ABCC_MsbA MsbA is an e 99.7 1.7E-17 3.6E-22 142.4 3.0 174 12-205 16-219 (234)
172 PRK00089 era GTPase Era; Revie 99.7 8.1E-17 1.8E-21 142.7 7.5 193 26-238 7-220 (292)
173 PRK13640 cbiO cobalt transport 99.7 7.5E-18 1.6E-22 148.7 0.8 176 11-206 20-227 (282)
174 PRK13632 cbiO cobalt transport 99.7 9.1E-18 2E-22 147.4 1.3 176 11-206 22-226 (271)
175 PRK14268 phosphate ABC transpo 99.7 1.2E-17 2.6E-22 145.5 2.0 184 11-206 25-237 (258)
176 PRK13549 xylose transporter AT 99.7 2.7E-17 5.9E-22 156.3 4.4 179 11-207 275-490 (506)
177 COG4604 CeuD ABC-type enteroch 99.7 2.3E-17 5.1E-22 135.0 3.3 184 11-207 14-221 (252)
178 PRK14267 phosphate ABC transpo 99.7 1.2E-17 2.6E-22 145.0 1.7 180 11-206 17-232 (253)
179 PRK14273 phosphate ABC transpo 99.7 1.2E-17 2.7E-22 145.0 1.8 180 11-206 20-233 (254)
180 KOG1489 Predicted GTP-binding 99.7 2E-16 4.4E-21 137.5 9.2 122 11-155 183-304 (366)
181 PRK13648 cbiO cobalt transport 99.7 1.1E-17 2.3E-22 146.7 1.2 175 12-206 23-226 (269)
182 PRK13642 cbiO cobalt transport 99.7 9E-18 1.9E-22 147.9 0.6 176 11-206 20-224 (277)
183 PRK14242 phosphate transporter 99.7 1.4E-17 3E-22 144.6 1.7 184 11-206 19-232 (253)
184 cd03299 ABC_ModC_like Archeal 99.7 1.8E-17 4E-22 142.4 2.4 174 13-205 14-213 (235)
185 PRK15056 manganese/iron transp 99.7 2.9E-17 6.3E-22 144.2 3.5 177 11-207 20-226 (272)
186 PRK14270 phosphate ABC transpo 99.7 2E-17 4.2E-22 143.6 2.1 185 11-206 17-230 (251)
187 cd03230 ABC_DR_subfamily_A Thi 99.7 3.6E-17 7.9E-22 134.2 3.4 148 11-199 13-172 (173)
188 PRK10418 nikD nickel transport 99.7 2.6E-17 5.6E-22 143.1 2.6 180 11-206 16-225 (254)
189 PRK14248 phosphate ABC transpo 99.7 2E-17 4.4E-22 144.9 1.9 185 11-206 34-247 (268)
190 PRK11288 araG L-arabinose tran 99.7 4.6E-17 1E-21 154.5 4.1 176 13-206 268-480 (501)
191 cd03252 ABCC_Hemolysin The ABC 99.7 3.8E-17 8.3E-22 140.5 3.2 174 11-205 15-219 (237)
192 cd03254 ABCC_Glucan_exporter_l 99.7 4E-17 8.7E-22 139.6 3.3 174 11-205 16-220 (229)
193 PRK13545 tagH teichoic acids e 99.7 3.1E-17 6.7E-22 153.8 2.5 172 11-206 37-227 (549)
194 PRK09700 D-allose transporter 99.7 5.8E-17 1.3E-21 154.2 4.4 174 13-204 278-491 (510)
195 PRK14259 phosphate ABC transpo 99.7 5.6E-17 1.2E-21 142.2 3.8 175 11-197 26-228 (269)
196 PRK14269 phosphate ABC transpo 99.7 3.1E-17 6.7E-22 141.9 2.1 181 11-205 15-224 (246)
197 TIGR02982 heterocyst_DevA ABC 99.7 3.8E-17 8.2E-22 139.1 2.5 170 11-200 18-219 (220)
198 PRK14237 phosphate transporter 99.6 3.5E-17 7.7E-22 143.3 2.4 187 10-207 32-247 (267)
199 cd03253 ABCC_ATM1_transporter 99.6 5.6E-17 1.2E-21 139.3 3.6 175 11-205 14-218 (236)
200 PRK14238 phosphate transporter 99.6 3.4E-17 7.3E-22 143.8 2.2 185 11-206 37-250 (271)
201 cd03232 ABC_PDR_domain2 The pl 99.6 5.5E-17 1.2E-21 135.3 3.2 161 11-203 20-191 (192)
202 PRK11308 dppF dipeptide transp 99.6 2.4E-17 5.1E-22 148.4 1.1 178 11-206 28-239 (327)
203 PRK13543 cytochrome c biogenes 99.6 1.3E-16 2.7E-21 135.4 5.2 165 11-195 24-210 (214)
204 PRK10261 glutathione transport 99.6 2.7E-17 5.9E-22 159.8 1.3 177 12-206 338-548 (623)
205 PRK15439 autoinducer 2 ABC tra 99.6 6.8E-17 1.5E-21 153.7 3.9 176 13-206 278-487 (510)
206 PRK14262 phosphate ABC transpo 99.6 2.9E-17 6.2E-22 142.4 1.2 185 11-206 16-229 (250)
207 PLN03211 ABC transporter G-25; 99.6 3.7E-17 8E-22 159.4 2.0 183 10-207 80-292 (659)
208 PRK10247 putative ABC transpor 99.6 7.6E-17 1.6E-21 137.7 3.7 167 11-196 20-211 (225)
209 PRK14274 phosphate ABC transpo 99.6 4E-17 8.6E-22 142.3 2.0 179 11-206 25-238 (259)
210 PRK14235 phosphate transporter 99.6 3.1E-17 6.8E-22 143.7 1.3 184 11-206 32-246 (267)
211 PRK10419 nikE nickel transport 99.6 5.2E-17 1.1E-21 142.4 2.7 179 11-207 25-237 (268)
212 PRK10744 pstB phosphate transp 99.6 3.3E-17 7.2E-22 142.9 1.5 185 11-206 26-239 (260)
213 PRK14257 phosphate ABC transpo 99.6 4.2E-17 9.1E-22 146.8 2.1 186 11-207 95-309 (329)
214 PRK14241 phosphate transporter 99.6 3.8E-17 8.2E-22 142.4 1.7 185 11-206 17-237 (258)
215 PRK14256 phosphate ABC transpo 99.6 4.5E-17 9.8E-22 141.4 2.1 185 11-206 17-231 (252)
216 PRK14245 phosphate ABC transpo 99.6 4.4E-17 9.5E-22 141.3 2.0 183 11-206 16-229 (250)
217 PRK15134 microcin C ABC transp 99.6 4.7E-17 1E-21 155.5 2.3 177 11-206 299-510 (529)
218 PRK15177 Vi polysaccharide exp 99.6 5.9E-17 1.3E-21 137.4 2.6 169 14-207 3-188 (213)
219 PRK11288 araG L-arabinose tran 99.6 6E-17 1.3E-21 153.8 2.9 174 11-203 17-221 (501)
220 PRK14272 phosphate ABC transpo 99.6 4.7E-17 1E-21 141.1 2.0 180 11-206 17-231 (252)
221 TIGR03608 L_ocin_972_ABC putat 99.6 7.5E-17 1.6E-21 135.7 3.1 162 11-191 11-203 (206)
222 PRK11701 phnK phosphonate C-P 99.6 4.3E-17 9.4E-22 142.0 1.7 178 11-206 19-236 (258)
223 TIGR02633 xylG D-xylose ABC tr 99.6 7E-17 1.5E-21 153.2 3.3 178 11-206 14-225 (500)
224 PRK14263 phosphate ABC transpo 99.6 5.4E-17 1.2E-21 141.7 2.3 185 11-206 21-240 (261)
225 PRK14240 phosphate transporter 99.6 4.5E-17 9.8E-22 141.1 1.8 185 11-206 16-229 (250)
226 cd03246 ABCC_Protease_Secretio 99.6 1.1E-16 2.4E-21 131.3 3.9 146 11-199 15-172 (173)
227 cd03214 ABC_Iron-Siderophores_ 99.6 1.1E-16 2.3E-21 132.3 3.7 151 11-202 12-178 (180)
228 PRK14239 phosphate transporter 99.6 5.8E-17 1.3E-21 140.6 2.2 182 11-206 18-231 (252)
229 PRK14251 phosphate ABC transpo 99.6 7E-17 1.5E-21 140.1 2.6 184 11-205 17-229 (251)
230 cd03231 ABC_CcmA_heme_exporter 99.6 2.2E-16 4.8E-21 132.6 5.5 159 11-191 13-195 (201)
231 PRK14249 phosphate ABC transpo 99.6 6.8E-17 1.5E-21 140.2 2.2 180 11-206 17-230 (251)
232 cd03247 ABCC_cytochrome_bd The 99.6 1.2E-16 2.6E-21 131.7 3.5 150 12-202 16-176 (178)
233 PRK10762 D-ribose transporter 99.6 1.3E-16 2.8E-21 151.5 4.1 177 13-207 267-480 (501)
234 cd03245 ABCC_bacteriocin_expor 99.6 1.5E-16 3.2E-21 135.2 4.0 176 11-202 17-218 (220)
235 PRK15093 antimicrobial peptide 99.6 3.2E-17 7E-22 147.8 -0.2 182 11-206 20-243 (330)
236 PRK10938 putative molybdenum t 99.6 1.8E-16 4E-21 150.0 4.9 170 11-205 16-218 (490)
237 cd03369 ABCC_NFT1 Domain 2 of 99.6 2.3E-16 5.1E-21 132.9 5.0 161 11-204 21-205 (207)
238 COG4674 Uncharacterized ABC-ty 99.6 2.6E-17 5.7E-22 134.5 -1.0 179 13-207 20-231 (249)
239 PRK14275 phosphate ABC transpo 99.6 1.2E-16 2.7E-21 141.3 3.1 181 12-206 53-265 (286)
240 cd03244 ABCC_MRP_domain2 Domai 99.6 1.8E-16 3.9E-21 134.8 4.0 173 11-204 17-219 (221)
241 PRK14243 phosphate transporter 99.6 9.2E-17 2E-21 140.5 2.2 185 11-206 23-243 (264)
242 cd03216 ABC_Carb_Monos_I This 99.6 8.1E-17 1.8E-21 131.0 1.5 145 11-202 13-162 (163)
243 cd03217 ABC_FeS_Assembly ABC-t 99.6 2E-16 4.3E-21 132.8 3.9 160 11-204 13-187 (200)
244 PRK14252 phosphate ABC transpo 99.6 1.1E-16 2.5E-21 139.9 2.3 184 11-206 29-244 (265)
245 TIGR00955 3a01204 The Eye Pigm 99.6 1.6E-16 3.6E-21 154.2 3.6 184 9-207 36-252 (617)
246 PRK09473 oppD oligopeptide tra 99.6 8.2E-17 1.8E-21 145.1 1.3 178 11-206 29-246 (330)
247 CHL00131 ycf16 sulfate ABC tra 99.6 1.2E-16 2.6E-21 138.6 2.3 180 11-206 20-236 (252)
248 TIGR02633 xylG D-xylose ABC tr 99.6 2.2E-16 4.8E-21 149.8 4.3 176 11-204 273-485 (500)
249 PRK10261 glutathione transport 99.6 7.1E-17 1.5E-21 156.9 0.9 180 11-206 29-253 (623)
250 TIGR03269 met_CoM_red_A2 methy 99.6 1.6E-16 3.5E-21 151.5 3.1 179 11-206 13-253 (520)
251 TIGR01257 rim_protein retinal- 99.6 1.1E-16 2.4E-21 169.3 2.1 176 11-206 943-1144(2272)
252 PRK11022 dppD dipeptide transp 99.6 7.5E-17 1.6E-21 145.1 0.7 182 11-206 20-238 (326)
253 cd03228 ABCC_MRP_Like The MRP 99.6 2.7E-16 5.9E-21 128.8 3.9 143 12-198 16-170 (171)
254 TIGR01166 cbiO cobalt transpor 99.6 3.3E-16 7.1E-21 130.3 4.4 148 11-176 5-177 (190)
255 PRK14258 phosphate ABC transpo 99.6 1.7E-16 3.6E-21 138.6 2.7 180 12-207 21-241 (261)
256 PRK14253 phosphate ABC transpo 99.6 1.4E-16 3E-21 138.0 2.0 184 11-205 16-227 (249)
257 PRK14265 phosphate ABC transpo 99.6 1.6E-16 3.5E-21 139.7 2.5 186 11-207 33-254 (274)
258 PRK14261 phosphate ABC transpo 99.6 1.4E-16 3E-21 138.4 1.8 184 11-206 19-232 (253)
259 cd03248 ABCC_TAP TAP, the Tran 99.6 2.1E-16 4.6E-21 134.9 2.9 170 11-199 27-225 (226)
260 PRK14271 phosphate ABC transpo 99.6 2.1E-16 4.6E-21 139.1 2.9 185 11-206 34-246 (276)
261 PRK13538 cytochrome c biogenes 99.6 5.7E-16 1.2E-20 130.4 5.3 157 11-186 14-194 (204)
262 COG2274 SunT ABC-type bacterio 99.6 4E-16 8.6E-21 152.1 4.8 177 11-207 486-692 (709)
263 cd03237 ABC_RNaseL_inhibitor_d 99.6 2.3E-16 5E-21 136.6 2.8 158 15-199 16-193 (246)
264 PRK14244 phosphate ABC transpo 99.6 1.8E-16 4E-21 137.5 2.1 184 11-206 18-232 (251)
265 KOG0059 Lipid exporter ABCA1 a 99.6 5.9E-16 1.3E-20 155.4 5.9 181 13-207 580-783 (885)
266 TIGR02323 CP_lyasePhnK phospho 99.6 1.5E-16 3.3E-21 138.1 1.5 177 12-206 17-233 (253)
267 TIGR03269 met_CoM_red_A2 methy 99.6 2.6E-16 5.6E-21 150.1 3.0 182 11-206 297-512 (520)
268 PRK14266 phosphate ABC transpo 99.6 1.7E-16 3.7E-21 137.5 1.5 185 11-207 16-230 (250)
269 PRK14255 phosphate ABC transpo 99.6 2.9E-16 6.2E-21 136.3 2.9 181 11-205 18-230 (252)
270 PRK15134 microcin C ABC transp 99.6 1.4E-16 3.1E-21 152.2 1.0 179 11-205 22-240 (529)
271 PRK11176 lipid transporter ATP 99.6 3.5E-16 7.6E-21 151.0 3.6 178 10-207 355-563 (582)
272 cd03289 ABCC_CFTR2 The CFTR su 99.6 3.7E-16 8.1E-21 137.4 3.3 174 11-207 17-221 (275)
273 PRK09580 sufC cysteine desulfu 99.6 3.8E-16 8.3E-21 135.1 3.2 181 11-207 14-231 (248)
274 TIGR02324 CP_lyasePhnL phospho 99.6 7.7E-16 1.7E-20 131.3 5.0 164 11-191 21-219 (224)
275 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 2.6E-16 5.7E-21 154.7 2.4 177 10-206 465-668 (686)
276 PRK14254 phosphate ABC transpo 99.6 2.4E-16 5.2E-21 139.4 1.9 185 11-205 52-263 (285)
277 PRK09544 znuC high-affinity zi 99.6 3.7E-16 8E-21 135.8 3.0 167 11-206 17-204 (251)
278 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 3.3E-16 7.1E-21 154.6 2.9 174 11-207 492-696 (710)
279 COG1132 MdlB ABC-type multidru 99.6 4.4E-16 9.6E-21 149.9 3.7 178 10-207 341-548 (567)
280 PRK10982 galactose/methyl gala 99.6 3.3E-16 7.2E-21 148.3 2.7 175 12-204 262-473 (491)
281 PRK14246 phosphate ABC transpo 99.6 3.9E-16 8.5E-21 136.0 2.8 180 11-206 23-236 (257)
282 PRK14236 phosphate transporter 99.6 2.6E-16 5.6E-21 138.2 1.6 184 11-206 38-251 (272)
283 PRK14260 phosphate ABC transpo 99.6 4.5E-16 9.8E-21 135.7 2.8 180 11-207 20-239 (259)
284 PRK14264 phosphate ABC transpo 99.6 4.6E-16 1E-20 138.8 2.7 187 11-206 58-284 (305)
285 cd03250 ABCC_MRP_domain1 Domai 99.6 4.5E-16 9.7E-21 130.9 2.3 160 12-198 19-203 (204)
286 COG1123 ATPase components of v 99.6 7.2E-16 1.6E-20 144.3 3.9 180 8-205 301-513 (539)
287 TIGR03375 type_I_sec_LssB type 99.6 5.2E-16 1.1E-20 152.7 3.1 176 11-206 478-683 (694)
288 cd03222 ABC_RNaseL_inhibitor T 99.6 6.3E-16 1.4E-20 127.3 2.9 133 13-203 15-153 (177)
289 COG1119 ModF ABC-type molybden 99.6 1.7E-16 3.6E-21 134.1 -0.7 178 11-204 44-255 (257)
290 PRK11174 cysteine/glutathione 99.6 7E-16 1.5E-20 149.1 3.0 176 11-207 363-568 (588)
291 TIGR01193 bacteriocin_ABC ABC- 99.6 6.6E-16 1.4E-20 152.3 2.8 176 11-206 487-692 (708)
292 PRK11160 cysteine/glutathione 99.6 8.2E-16 1.8E-20 148.3 3.4 175 11-206 353-557 (574)
293 COG1163 DRG Predicted GTPase [ 99.6 2.8E-15 6.1E-20 130.9 6.1 90 25-131 64-153 (365)
294 TIGR01187 potA spermidine/putr 99.6 3.1E-16 6.7E-21 141.1 -0.1 159 29-206 1-185 (325)
295 cd03288 ABCC_SUR2 The SUR doma 99.6 8.2E-16 1.8E-20 134.0 2.5 175 11-206 34-238 (257)
296 COG4608 AppF ABC-type oligopep 99.6 2.1E-15 4.5E-20 129.7 4.8 159 11-207 26-195 (268)
297 PRK13540 cytochrome c biogenes 99.6 1.7E-15 3.6E-20 127.1 4.1 153 11-184 14-190 (200)
298 TIGR01189 ccmA heme ABC export 99.6 2.3E-15 5E-20 126.0 4.9 146 11-176 13-177 (198)
299 PRK11147 ABC transporter ATPas 99.6 8.4E-16 1.8E-20 149.8 2.4 177 12-208 333-525 (635)
300 TIGR01846 type_I_sec_HlyB type 99.6 9.8E-16 2.1E-20 150.8 2.7 176 11-206 470-675 (694)
301 PRK15064 ABC transporter ATP-b 99.6 9.5E-16 2.1E-20 146.5 2.3 171 12-207 333-521 (530)
302 COG4148 ModC ABC-type molybdat 99.6 2.4E-15 5.2E-20 129.1 4.5 164 20-207 20-214 (352)
303 PRK12296 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.6E-19 136.2 9.6 105 9-130 144-248 (500)
304 PRK13541 cytochrome c biogenes 99.6 2.3E-15 5.1E-20 125.7 4.3 150 16-186 18-188 (195)
305 KOG0055 Multidrug/pheromone ex 99.6 1.2E-15 2.5E-20 152.8 2.8 179 9-207 364-572 (1228)
306 TIGR01842 type_I_sec_PrtD type 99.6 2E-15 4.4E-20 144.7 4.2 177 11-206 331-537 (544)
307 PRK13539 cytochrome c biogenes 99.6 4.2E-15 9.2E-20 125.4 5.7 158 12-191 16-195 (207)
308 PRK10789 putative multidrug tr 99.6 1.5E-15 3.3E-20 146.3 3.2 176 11-206 328-533 (569)
309 TIGR00958 3a01208 Conjugate Tr 99.5 1.7E-15 3.6E-20 149.5 2.9 174 10-206 493-697 (711)
310 cd03223 ABCD_peroxisomal_ALDP 99.5 3.1E-15 6.7E-20 122.0 4.0 148 11-198 14-163 (166)
311 TIGR01192 chvA glucan exporter 99.5 1.7E-15 3.7E-20 146.3 2.9 175 12-206 349-553 (585)
312 PRK10790 putative multidrug tr 99.5 1.7E-15 3.7E-20 146.6 2.6 176 11-207 354-559 (592)
313 TIGR02204 MsbA_rel ABC transpo 99.5 3.9E-15 8.5E-20 143.5 4.9 175 11-206 353-558 (576)
314 COG4987 CydC ABC-type transpor 99.5 2.1E-15 4.5E-20 139.4 2.7 176 11-207 351-557 (573)
315 COG4138 BtuD ABC-type cobalami 99.5 2.5E-14 5.5E-19 115.3 8.5 180 14-206 15-216 (248)
316 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.7E-15 3.7E-20 133.6 1.9 172 11-206 50-242 (282)
317 PRK12299 obgE GTPase CgtA; Rev 99.5 4.3E-14 9.4E-19 127.4 10.6 104 10-129 144-247 (335)
318 PRK15064 ABC transporter ATP-b 99.5 3E-15 6.5E-20 143.1 3.3 176 11-207 14-238 (530)
319 cd03236 ABC_RNaseL_inhibitor_d 99.5 2.5E-15 5.3E-20 130.8 2.3 168 12-203 15-219 (255)
320 PRK13409 putative ATPase RIL; 99.5 2.4E-15 5.3E-20 145.0 2.4 165 14-207 355-538 (590)
321 cd03290 ABCC_SUR1_N The SUR do 99.5 4.1E-15 8.8E-20 126.3 3.5 167 11-198 14-217 (218)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 3E-15 6.5E-20 119.3 2.5 129 12-199 14-144 (144)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 4.3E-15 9.2E-20 142.7 3.9 176 12-207 336-527 (552)
324 TIGR00956 3a01205 Pleiotropic 99.5 2.8E-15 6.1E-20 156.5 2.5 184 10-208 775-990 (1394)
325 COG4598 HisP ABC-type histidin 99.5 5.1E-15 1.1E-19 119.8 3.2 177 11-206 19-236 (256)
326 TIGR02203 MsbA_lipidA lipid A 99.5 6.4E-15 1.4E-19 141.9 4.4 175 11-205 345-550 (571)
327 COG4167 SapF ABC-type antimicr 99.5 2.4E-14 5.1E-19 116.3 7.0 181 11-206 26-234 (267)
328 PRK11819 putative ABC transpor 99.5 3.5E-15 7.7E-20 143.4 2.6 174 12-207 338-529 (556)
329 TIGR00956 3a01205 Pleiotropic 99.5 7.7E-15 1.7E-19 153.3 5.0 188 9-207 72-296 (1394)
330 PRK11819 putative ABC transpor 99.5 5.8E-15 1.3E-19 141.9 3.8 179 11-207 20-246 (556)
331 PRK10636 putative ABC transpor 99.5 2.9E-15 6.2E-20 146.0 1.7 171 11-207 325-513 (638)
332 KOG0057 Mitochondrial Fe/S clu 99.5 4.8E-15 1E-19 137.2 2.7 176 11-207 365-570 (591)
333 PRK12297 obgE GTPase CgtA; Rev 99.5 1.2E-13 2.6E-18 127.8 12.0 102 13-130 147-248 (424)
334 PLN03140 ABC transporter G fam 99.5 1.2E-14 2.6E-19 151.9 5.6 188 6-207 173-423 (1470)
335 COG4619 ABC-type uncharacteriz 99.5 3.5E-14 7.6E-19 113.8 7.0 170 9-198 14-210 (223)
336 TIGR02729 Obg_CgtA Obg family 99.5 1.8E-13 4E-18 123.1 12.5 105 10-130 143-247 (329)
337 PRK10938 putative molybdenum t 99.5 7.3E-15 1.6E-19 139.2 3.1 174 12-203 274-484 (490)
338 PRK13657 cyclic beta-1,2-gluca 99.5 7.3E-15 1.6E-19 142.1 3.1 175 11-205 348-552 (588)
339 PLN03232 ABC transporter C fam 99.5 1E-14 2.2E-19 153.6 4.3 175 11-207 1249-1454(1495)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 5.4E-15 1.2E-19 142.0 2.0 179 11-207 18-244 (552)
341 COG1123 ATPase components of v 99.5 4.4E-15 9.6E-20 139.0 1.4 180 11-207 22-240 (539)
342 PRK10535 macrolide transporter 99.5 6.1E-15 1.3E-19 144.0 2.3 177 11-207 21-228 (648)
343 COG4988 CydD ABC-type transpor 99.5 2.3E-14 5E-19 134.0 5.3 177 12-207 335-539 (559)
344 COG0396 sufC Cysteine desulfur 99.5 8.9E-15 1.9E-19 122.5 2.1 183 11-206 17-229 (251)
345 KOG0061 Transporter, ABC super 99.5 2.3E-14 5.1E-19 138.6 4.9 185 9-207 41-256 (613)
346 PLN03130 ABC transporter C fam 99.5 1.5E-14 3.3E-19 152.7 3.5 175 11-207 1252-1457(1622)
347 cd00267 ABC_ATPase ABC (ATP-bi 99.5 1.7E-14 3.7E-19 116.3 2.8 139 12-198 13-156 (157)
348 COG0488 Uup ATPase components 99.5 2.5E-14 5.3E-19 135.5 4.2 178 11-207 16-236 (530)
349 PRK13409 putative ATPase RIL; 99.5 1.9E-14 4E-19 138.9 3.4 158 13-198 89-287 (590)
350 TIGR02857 CydD thiol reductant 99.5 3.4E-14 7.5E-19 135.7 5.2 161 11-191 335-526 (529)
351 COG0444 DppD ABC-type dipeptid 99.5 4.8E-15 1E-19 130.1 -0.7 185 10-207 17-239 (316)
352 PLN03140 ABC transporter G fam 99.5 7.7E-15 1.7E-19 153.3 0.3 185 11-208 893-1107(1470)
353 PF02421 FeoB_N: Ferrous iron 99.5 7.5E-14 1.6E-18 112.2 5.4 86 26-129 2-89 (156)
354 PRK10636 putative ABC transpor 99.5 1.1E-14 2.5E-19 141.8 0.5 179 11-207 14-232 (638)
355 KOG1423 Ras-like GTPase ERA [C 99.4 6.2E-13 1.3E-17 115.4 10.7 196 25-238 73-320 (379)
356 TIGR00957 MRP_assoc_pro multi 99.4 5.8E-14 1.3E-18 148.1 4.7 175 11-207 1299-1504(1522)
357 cd03238 ABC_UvrA The excision 99.4 2.9E-14 6.4E-19 117.3 1.6 152 9-204 6-170 (176)
358 COG4161 ArtP ABC-type arginine 99.4 1.9E-13 4E-18 109.1 6.0 170 13-205 17-224 (242)
359 COG4133 CcmA ABC-type transpor 99.4 1.9E-13 4.2E-18 111.3 6.1 138 14-169 18-173 (209)
360 PLN03073 ABC transporter F fam 99.4 3E-14 6.4E-19 140.1 1.4 171 13-207 524-710 (718)
361 TIGR02868 CydC thiol reductant 99.4 1.3E-13 2.8E-18 131.8 5.7 143 12-172 349-516 (529)
362 COG4181 Predicted ABC-type tra 99.4 1.3E-13 2.9E-18 110.8 4.9 179 10-202 22-226 (228)
363 PTZ00243 ABC transporter; Prov 99.4 7.4E-14 1.6E-18 147.3 4.3 175 11-207 1323-1529(1560)
364 PRK11147 ABC transporter ATPas 99.4 8.1E-14 1.8E-18 135.9 3.4 178 11-207 16-239 (635)
365 TIGR01194 cyc_pep_trnsptr cycl 99.4 6.3E-14 1.4E-18 134.7 2.3 168 12-202 356-550 (555)
366 COG1160 Predicted GTPases [Gen 99.4 3.5E-13 7.7E-18 123.0 6.8 89 25-130 4-95 (444)
367 PTZ00265 multidrug resistance 99.4 1.1E-13 2.4E-18 145.0 4.1 190 10-207 1180-1448(1466)
368 PRK10522 multidrug transporter 99.4 1.4E-13 2.9E-18 132.2 2.9 169 11-203 336-530 (547)
369 PTZ00265 multidrug resistance 99.4 2.5E-13 5.4E-18 142.5 4.3 174 10-199 397-656 (1466)
370 KOG0058 Peptide exporter, ABC 99.4 4.9E-13 1.1E-17 127.7 5.2 176 10-206 480-686 (716)
371 COG4172 ABC-type uncharacteriz 99.4 4E-13 8.7E-18 120.7 4.3 180 9-207 298-512 (534)
372 cd01896 DRG The developmentall 99.4 2.9E-12 6.2E-17 110.2 9.3 88 26-130 2-89 (233)
373 TIGR01271 CFTR_protein cystic 99.4 2.7E-13 5.9E-18 142.7 3.1 174 10-206 1231-1435(1490)
374 COG0486 ThdF Predicted GTPase 99.3 1.7E-12 3.7E-17 118.8 7.3 95 19-130 212-308 (454)
375 COG4618 ArpD ABC-type protease 99.3 1.2E-12 2.6E-17 120.5 5.6 181 9-207 347-556 (580)
376 cd01898 Obg Obg subfamily. Th 99.3 5.5E-12 1.2E-16 102.0 8.5 88 26-129 2-89 (170)
377 TIGR01271 CFTR_protein cystic 99.3 3.6E-13 7.9E-18 141.8 1.8 169 11-207 439-632 (1490)
378 PF01926 MMR_HSR1: 50S ribosom 99.3 3.8E-12 8.2E-17 97.3 6.5 86 26-128 1-89 (116)
379 TIGR00957 MRP_assoc_pro multi 99.3 8.6E-13 1.9E-17 139.3 2.5 170 11-207 651-846 (1522)
380 KOG0055 Multidrug/pheromone ex 99.3 1.4E-12 3.1E-17 130.9 3.9 180 8-207 1000-1209(1228)
381 KOG0056 Heavy metal exporter H 99.3 1.5E-12 3.3E-17 119.3 1.9 181 8-205 548-755 (790)
382 PLN03073 ABC transporter F fam 99.2 1.5E-12 3.3E-17 128.0 0.8 65 140-207 360-427 (718)
383 cd01881 Obg_like The Obg-like 99.2 1.5E-11 3.2E-16 99.8 6.3 85 29-130 1-86 (176)
384 COG0488 Uup ATPase components 99.2 1.4E-12 3.1E-17 123.6 0.3 177 12-207 336-521 (530)
385 COG2262 HflX GTPases [General 99.2 1.8E-11 4E-16 110.4 6.9 89 25-131 193-284 (411)
386 PTZ00243 ABC transporter; Prov 99.2 3.5E-12 7.6E-17 134.8 2.0 170 11-207 673-866 (1560)
387 TIGR00954 3a01203 Peroxysomal 99.2 5.6E-12 1.2E-16 123.5 2.8 162 12-196 466-652 (659)
388 cd03270 ABC_UvrA_I The excisio 99.2 1.3E-11 2.7E-16 105.7 4.1 61 141-203 154-225 (226)
389 PLN03130 ABC transporter C fam 99.2 6.1E-12 1.3E-16 133.2 2.6 170 10-207 629-824 (1622)
390 COG4615 PvdE ABC-type sideroph 99.2 4.8E-11 1E-15 107.2 7.5 172 13-203 338-529 (546)
391 PLN03232 ABC transporter C fam 99.2 1.2E-11 2.7E-16 130.5 3.1 170 10-207 629-824 (1495)
392 TIGR03156 GTP_HflX GTP-binding 99.2 8.6E-11 1.9E-15 106.8 7.8 91 23-129 188-279 (351)
393 KOG0054 Multidrug resistance-a 99.1 1.4E-11 3E-16 126.2 2.7 177 11-207 1153-1358(1381)
394 KOG1191 Mitochondrial GTPase [ 99.1 8.7E-11 1.9E-15 107.9 7.0 93 19-128 263-358 (531)
395 COG0370 FeoB Fe2+ transport sy 99.1 1.4E-10 3E-15 110.6 8.3 87 26-130 5-93 (653)
396 PF00005 ABC_tran: ABC transpo 99.1 3.1E-11 6.7E-16 94.7 3.3 49 15-74 2-50 (137)
397 COG4778 PhnL ABC-type phosphon 99.1 5.8E-11 1.3E-15 95.6 4.5 168 10-191 23-222 (235)
398 KOG1486 GTP-binding protein DR 99.1 2.9E-11 6.4E-16 102.5 2.8 91 22-129 59-150 (364)
399 KOG0065 Pleiotropic drug resis 99.1 4.1E-11 8.8E-16 120.9 4.2 192 13-215 806-1025(1391)
400 COG1160 Predicted GTPases [Gen 99.1 1.2E-10 2.6E-15 106.6 5.6 93 22-131 176-273 (444)
401 PRK11058 GTPase HflX; Provisio 99.1 2E-10 4.2E-15 106.9 7.1 90 25-130 198-288 (426)
402 COG4136 ABC-type uncharacteriz 99.0 3.5E-10 7.6E-15 89.4 6.0 137 16-169 20-177 (213)
403 COG4107 PhnK ABC-type phosphon 99.0 4.7E-10 1E-14 90.8 6.7 175 12-204 20-234 (258)
404 COG5265 ATM1 ABC-type transpor 99.0 1.6E-10 3.4E-15 104.6 3.5 179 10-205 275-480 (497)
405 KOG0054 Multidrug resistance-a 99.0 1.4E-10 3.1E-15 118.9 3.6 173 10-207 533-727 (1381)
406 COG1084 Predicted GTPase [Gene 99.0 3.2E-09 7E-14 93.5 9.7 89 24-129 168-258 (346)
407 cd01878 HflX HflX subfamily. 99.0 1.8E-09 3.9E-14 90.4 7.7 91 23-129 39-131 (204)
408 COG1129 MglA ABC-type sugar tr 99.0 4.1E-10 8.8E-15 105.2 3.5 175 14-203 275-482 (500)
409 cd04164 trmE TrmE (MnmE, ThdF, 98.9 2.5E-09 5.5E-14 84.7 7.2 89 24-129 1-91 (157)
410 COG4172 ABC-type uncharacteriz 98.9 8.4E-10 1.8E-14 99.6 4.7 186 10-205 22-241 (534)
411 TIGR00450 mnmE_trmE_thdF tRNA 98.9 2E-09 4.4E-14 100.6 7.3 95 19-130 198-294 (442)
412 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 3.6E-09 7.9E-14 88.3 7.9 86 26-128 2-93 (196)
413 COG3845 ABC-type uncharacteriz 98.9 3.2E-09 7E-14 97.9 8.0 177 11-206 271-487 (501)
414 TIGR03594 GTPase_EngA ribosome 98.9 2.5E-09 5.4E-14 99.7 7.1 88 26-130 1-90 (429)
415 KOG0062 ATPase component of AB 98.9 2.1E-09 4.6E-14 99.4 6.2 64 141-207 215-281 (582)
416 PRK05291 trmE tRNA modificatio 98.9 3.8E-09 8.2E-14 99.2 7.9 95 19-130 210-306 (449)
417 KOG0927 Predicted transporter 98.9 2E-09 4.4E-14 100.1 5.0 176 15-208 407-593 (614)
418 COG1245 Predicted ATPase, RNas 98.9 1.1E-09 2.3E-14 100.2 2.8 164 18-201 361-534 (591)
419 KOG1487 GTP-binding protein DR 98.9 1.8E-09 4E-14 92.1 3.9 109 22-159 56-165 (358)
420 PRK09554 feoB ferrous iron tra 98.8 3.3E-08 7.2E-13 98.1 13.0 89 25-130 4-97 (772)
421 cd03283 ABC_MutS-like MutS-lik 98.8 1.2E-09 2.6E-14 91.7 2.4 29 20-48 21-49 (199)
422 cd03280 ABC_MutS2 MutS2 homolo 98.8 5E-09 1.1E-13 87.9 5.6 56 146-203 110-171 (200)
423 PRK00093 GTP-binding protein D 98.8 1.1E-08 2.5E-13 95.5 7.4 88 26-130 3-92 (435)
424 PRK03003 GTP-binding protein D 98.8 2E-08 4.2E-13 95.0 8.0 89 25-130 39-129 (472)
425 KOG0410 Predicted GTP binding 98.8 1E-08 2.2E-13 90.1 5.4 89 24-130 178-269 (410)
426 KOG0927 Predicted transporter 98.7 5.3E-09 1.2E-13 97.3 3.6 65 140-207 237-305 (614)
427 cd01879 FeoB Ferrous iron tran 98.7 1.5E-08 3.2E-13 80.6 5.4 82 29-128 1-84 (158)
428 cd04163 Era Era subfamily. Er 98.7 2.5E-08 5.5E-13 79.2 6.6 88 25-129 4-93 (168)
429 cd01897 NOG NOG1 is a nucleola 98.7 4.6E-08 1E-12 78.8 8.0 87 26-129 2-90 (168)
430 cd03278 ABC_SMC_barmotin Barmo 98.7 2.8E-09 6.1E-14 89.3 0.7 44 146-191 137-185 (197)
431 cd03279 ABC_sbcCD SbcCD and ot 98.7 1.9E-09 4E-14 91.4 -0.6 52 146-198 153-209 (213)
432 cd01894 EngA1 EngA1 subfamily. 98.7 2.1E-08 4.6E-13 79.4 5.2 84 28-128 1-86 (157)
433 PRK09518 bifunctional cytidyla 98.7 3.1E-08 6.7E-13 98.1 6.9 89 25-130 276-366 (712)
434 KOG2355 Predicted ABC-type tra 98.7 1.6E-08 3.6E-13 83.9 4.0 179 12-206 28-232 (291)
435 PRK03003 GTP-binding protein D 98.7 6.9E-08 1.5E-12 91.3 8.6 91 24-131 211-306 (472)
436 cd04171 SelB SelB subfamily. 98.7 5.1E-08 1.1E-12 77.9 6.6 82 25-129 1-85 (164)
437 cd03271 ABC_UvrA_II The excisi 98.7 8.3E-09 1.8E-13 90.0 2.1 58 146-205 192-260 (261)
438 cd01895 EngA2 EngA2 subfamily. 98.6 1.3E-07 2.8E-12 75.9 8.4 88 25-129 3-95 (174)
439 cd00820 PEPCK_HprK Phosphoenol 98.6 4.6E-08 1E-12 73.6 4.5 49 11-76 2-50 (107)
440 PRK00093 GTP-binding protein D 98.6 9.8E-08 2.1E-12 89.2 7.6 91 23-130 172-267 (435)
441 COG4178 ABC-type uncharacteriz 98.6 2.4E-08 5.2E-13 95.3 3.5 143 12-173 407-562 (604)
442 cd01861 Rab6 Rab6 subfamily. 98.6 1.1E-07 2.4E-12 76.0 6.9 81 26-128 2-82 (161)
443 cd01853 Toc34_like Toc34-like 98.6 8.7E-08 1.9E-12 83.1 6.5 66 20-102 27-93 (249)
444 PRK09518 bifunctional cytidyla 98.6 1.4E-07 3.1E-12 93.3 8.7 90 25-131 451-545 (712)
445 cd03272 ABC_SMC3_euk Eukaryoti 98.6 2.5E-08 5.4E-13 85.9 2.7 48 146-195 182-233 (243)
446 TIGR03594 GTPase_EngA ribosome 98.6 1.7E-07 3.6E-12 87.4 8.1 89 25-130 173-266 (429)
447 cd04104 p47_IIGP_like p47 (47- 98.6 6.8E-08 1.5E-12 80.8 4.8 24 25-48 2-25 (197)
448 PRK00454 engB GTP-binding prot 98.6 6.9E-08 1.5E-12 79.9 4.8 58 23-100 23-82 (196)
449 KOG0065 Pleiotropic drug resis 98.6 7.2E-08 1.6E-12 98.0 5.4 187 9-207 126-347 (1391)
450 COG0218 Predicted GTPase [Gene 98.6 1.4E-07 3E-12 78.1 6.2 59 23-101 23-83 (200)
451 cd01858 NGP_1 NGP-1. Autoanti 98.6 8.8E-08 1.9E-12 77.1 4.9 55 24-98 102-157 (157)
452 PRK04213 GTP-binding protein; 98.5 2.5E-07 5.4E-12 77.1 7.7 55 24-99 9-63 (201)
453 cd00880 Era_like Era (E. coli 98.5 2.4E-07 5.3E-12 72.5 7.2 85 29-129 1-86 (163)
454 cd03240 ABC_Rad50 The catalyti 98.5 1.8E-08 4E-13 84.8 0.7 48 141-191 138-192 (204)
455 KOG0066 eIF2-interacting prote 98.5 3.4E-08 7.3E-13 90.2 2.2 46 13-69 602-647 (807)
456 cd04155 Arl3 Arl3 subfamily. 98.5 2.7E-07 5.8E-12 74.7 7.0 74 24-128 14-91 (173)
457 PRK15467 ethanolamine utilizat 98.5 3.1E-07 6.8E-12 74.1 7.2 74 26-130 3-76 (158)
458 cd03273 ABC_SMC2_euk Eukaryoti 98.5 2.7E-08 6E-13 86.3 0.9 44 146-191 190-238 (251)
459 cd03243 ABC_MutS_homologs The 98.5 1.6E-08 3.4E-13 85.0 -0.7 32 16-47 21-52 (202)
460 cd04178 Nucleostemin_like Nucl 98.5 1.4E-07 3E-12 77.4 4.6 55 24-98 117-172 (172)
461 cd04160 Arfrp1 Arfrp1 subfamil 98.5 3.9E-07 8.4E-12 73.3 6.7 79 26-128 1-83 (167)
462 cd01855 YqeH YqeH. YqeH is an 98.5 1.4E-07 3E-12 78.3 3.8 56 23-98 126-190 (190)
463 TIGR00991 3a0901s02IAP34 GTP-b 98.5 3.1E-07 6.7E-12 81.5 6.2 82 25-127 39-127 (313)
464 cd04159 Arl10_like Arl10-like 98.4 7.8E-07 1.7E-11 70.1 7.4 76 27-128 2-77 (159)
465 TIGR03598 GTPase_YsxC ribosome 98.4 3.5E-07 7.5E-12 75.1 5.5 87 22-128 16-110 (179)
466 cd04166 CysN_ATPS CysN_ATPS su 98.4 2.6E-07 5.6E-12 77.9 4.8 94 26-129 1-111 (208)
467 COG1245 Predicted ATPase, RNas 98.4 8.8E-08 1.9E-12 87.9 2.0 59 146-206 233-296 (591)
468 cd01849 YlqF_related_GTPase Yl 98.4 3E-07 6.6E-12 73.8 4.9 57 22-98 98-155 (155)
469 cd00879 Sar1 Sar1 subfamily. 98.4 8.3E-07 1.8E-11 73.2 7.6 79 24-129 19-97 (190)
470 TIGR03238 dnd_assoc_3 dnd syst 98.4 1.7E-07 3.7E-12 87.2 3.5 49 12-73 20-69 (504)
471 PF04548 AIG1: AIG1 family; I 98.4 6.4E-07 1.4E-11 75.9 6.7 86 26-128 2-93 (212)
472 COG3596 Predicted GTPase [Gene 98.4 5.1E-07 1.1E-11 78.0 6.1 91 23-130 38-129 (296)
473 cd01866 Rab2 Rab2 subfamily. 98.4 8E-07 1.7E-11 71.9 6.8 82 25-128 5-86 (168)
474 cd01868 Rab11_like Rab11-like. 98.4 9.1E-07 2E-11 71.0 7.0 82 25-128 4-85 (165)
475 cd01130 VirB11-like_ATPase Typ 98.4 3.9E-07 8.5E-12 75.5 4.6 43 17-70 18-60 (186)
476 TIGR00231 small_GTP small GTP- 98.4 3.3E-07 7.2E-12 71.7 4.0 58 26-98 3-60 (161)
477 cd00154 Rab Rab family. Rab G 98.4 1.1E-06 2.5E-11 69.0 6.9 81 26-128 2-82 (159)
478 cd01876 YihA_EngB The YihA (En 98.4 4.4E-07 9.5E-12 72.3 4.5 55 27-101 2-58 (170)
479 cd04142 RRP22 RRP22 subfamily. 98.4 1.4E-06 3.1E-11 72.9 7.6 89 26-129 2-91 (198)
480 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 1.4E-06 3.1E-11 69.8 7.0 83 26-129 2-84 (168)
481 smart00175 RAB Rab subfamily o 98.3 1.5E-06 3.2E-11 69.5 6.9 81 26-128 2-82 (164)
482 COG2401 ABC-type ATPase fused 98.3 5.7E-07 1.2E-11 81.9 4.8 153 9-173 394-554 (593)
483 PRK09563 rbgA GTPase YlqF; Rev 98.3 1E-06 2.3E-11 78.0 6.2 62 22-103 119-181 (287)
484 smart00178 SAR Sar1p-like memb 98.3 2.5E-06 5.4E-11 70.4 7.9 80 22-128 15-94 (184)
485 TIGR00437 feoB ferrous iron tr 98.3 9.4E-07 2E-11 85.7 5.7 82 31-130 1-84 (591)
486 cd01862 Rab7 Rab7 subfamily. 98.3 2E-06 4.4E-11 69.2 6.8 81 26-128 2-82 (172)
487 cd00881 GTP_translation_factor 98.3 2.1E-06 4.5E-11 70.1 6.8 91 26-129 1-96 (189)
488 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 2.4E-06 5.2E-11 68.7 7.1 82 25-128 3-84 (166)
489 cd04114 Rab30 Rab30 subfamily. 98.3 2E-06 4.4E-11 69.2 6.6 82 25-128 8-89 (169)
490 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.3E-06 2.8E-11 69.0 5.2 55 26-100 85-140 (141)
491 cd01882 BMS1 Bms1. Bms1 is an 98.3 2.4E-06 5.3E-11 73.0 7.3 90 9-129 25-114 (225)
492 TIGR03596 GTPase_YlqF ribosome 98.3 1.4E-06 3.1E-11 76.7 5.7 60 23-102 117-177 (276)
493 KOG0064 Peroxisomal long-chain 98.3 1.2E-06 2.7E-11 81.7 5.3 35 14-48 498-532 (728)
494 cd03282 ABC_MSH4_euk MutS4 hom 98.3 1.4E-06 3E-11 73.4 5.2 38 10-47 15-52 (204)
495 PRK00349 uvrA excinuclease ABC 98.2 7.6E-07 1.6E-11 90.0 4.1 59 146-206 853-922 (943)
496 PLN03108 Rab family protein; P 98.2 2.7E-06 5.8E-11 71.8 6.8 82 25-128 7-88 (210)
497 cd04119 RJL RJL (RabJ-Like) su 98.2 3.3E-06 7.2E-11 67.5 7.0 81 26-128 2-82 (168)
498 PRK00635 excinuclease ABC subu 98.2 3.5E-07 7.7E-12 96.8 1.6 62 141-206 829-901 (1809)
499 cd01889 SelB_euk SelB subfamil 98.2 2.1E-06 4.5E-11 71.2 5.5 95 26-130 2-103 (192)
500 cd01867 Rab8_Rab10_Rab13_like 98.2 3.4E-06 7.4E-11 68.1 6.6 82 25-128 4-85 (167)
No 1
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=8e-41 Score=290.57 Aligned_cols=244 Identities=62% Similarity=1.013 Sum_probs=221.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
..+.-+..++|......+||||.|++||||+||+|+......++|||+|++|+.++|.+++.|+++++..|+|+...++.
T Consensus 6 ~~~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~ 85 (391)
T KOG1491|consen 6 DIEEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAF 85 (391)
T ss_pred ccccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeee
Confidence 57788899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHH
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV 169 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~ 169 (263)
++++|++|+.++++.+.+++++|+.++|.+|.++||+|+|++.++.|+.+..||.+||.++.+++.+.|.+++++.++++
T Consensus 86 l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~ 165 (391)
T KOG1491|consen 86 LTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKL 165 (391)
T ss_pred EEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhccc----hhHHHHHHHHHHHHHHhhcCC-cc-ccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCcc
Q 024748 170 EKSMKRSND----KQLKIEHELCQRVKAWLQDGK-DV-RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKF 243 (263)
Q Consensus 170 ~~~~~~~~~----h~~~~i~~l~d~i~~~L~~G~-~~-~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~ 243 (263)
.+.....+. ........+++++..+|-+|+ ++ ..+.|+|++++++...+++|.||++|.+|+.+.++.++.+.+
T Consensus 166 ~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~ 245 (391)
T KOG1491|consen 166 EKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKK 245 (391)
T ss_pred hhhhhcccCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHH
Confidence 877644332 344444668888888786554 43 448999999999999999999999999999999997777889
Q ss_pred HHHHHHHHHh
Q 024748 244 LPKIHAWCVL 253 (263)
Q Consensus 244 ~~~~~~~~~~ 253 (263)
+..+++|..+
T Consensus 246 l~~i~~w~~~ 255 (391)
T KOG1491|consen 246 LPKIKEWVDE 255 (391)
T ss_pred Hhhhhhhhhc
Confidence 9999988653
No 2
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-39 Score=284.59 Aligned_cols=229 Identities=49% Similarity=0.806 Sum_probs=206.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcC-CCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~-~~~~~~~~l~~~d~~g~~~~~ 102 (263)
+..+||||.||+|||||||+||...+.++||||||++|+.|.+.+++.++..++.++. |++..+..++++|++|+.+++
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 5689999999999999999999998778999999999999999999999999999999 688889999999999999999
Q ss_pred ccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc--chh
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--DKQ 180 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~--~h~ 180 (263)
+++++++++|+.++|++|+++||||+|++.++.|..+.+||.+||.+++.++.++|++.+++.++++.+....++ ...
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~ 161 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKE 161 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775443 355
Q ss_pred HHHHHHHHHHHHHHhhcCCcccc---CCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHHHHh
Q 024748 181 LKIEHELCQRVKAWLQDGKDVRL---GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWCVL 253 (263)
Q Consensus 181 ~~~i~~l~d~i~~~L~~G~~~~~---g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~~~~ 253 (263)
......++..+...|.+|...+. ..|++++...++...+++.||++|++|+.+..+.+. +.++++++.+...
T Consensus 162 ~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~ 236 (372)
T COG0012 162 LKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANL-NEYVKRLKELAAK 236 (372)
T ss_pred HHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccch-hHHHHHHHHHhhh
Confidence 66667788888888999987653 468888888899889999999999999998877542 5678888888654
No 3
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=1.5e-36 Score=264.79 Aligned_cols=222 Identities=55% Similarity=0.876 Sum_probs=197.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccccc
Q 024748 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (263)
Q Consensus 27 vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 106 (263)
+||||.||||||||||+|+|....+++|||||+.|..|.+.+++.++++++..|.|.+..+++++++|++|+..+.+.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999998889999999999999999999999999999999999999999999999999888888
Q ss_pred chHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 024748 107 GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 186 (263)
Q Consensus 107 ~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~h~~~~i~~ 186 (263)
+++++|+.+++.+|++++|+|+|+++++.|..+..||.+|+.+++.++.+.|++.+++.++++.+....+. .......+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~-~~~~~e~~ 159 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD-KEAKAELE 159 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 89999999999999999999999999988988889999999999999999999999999999887653321 33455678
Q ss_pred HHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHH
Q 024748 187 LCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAW 250 (263)
Q Consensus 187 l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~ 250 (263)
+++++..+|++|++++...|++++.+.++.+.++|.||++|++|+.++++.. .+....++..+
T Consensus 160 ~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~-~~~~~~~~~~~ 222 (274)
T cd01900 160 LLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLAN-GNNKVLKVREI 222 (274)
T ss_pred HHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhcc-ccHHHHHHHHH
Confidence 8999999999999988888999999999999999999999999999877642 23334444444
No 4
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=6.3e-36 Score=268.77 Aligned_cols=228 Identities=50% Similarity=0.815 Sum_probs=203.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
+..+||||.||||||||||+|+|....+++|||||+.|+.|.+.+++.++..++.++.|++..+.++.++|+||+..+.+
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 57899999999999999999999997779999999999999999999888899999999998899999999999999888
Q ss_pred cccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccchhHHH
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~h~~~~ 183 (263)
.+.+++++|+..++.+|++++|+|+|.++++.+..+..||.+|+.++++++.+.|++.+++.++++.+....+. .....
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~-~~~~~ 160 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD-KEAKA 160 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-hhHHH
Confidence 88889999999999999999999999999888888889999999999999999999999999999987653321 23345
Q ss_pred HHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHHHHh
Q 024748 184 EHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWCVL 253 (263)
Q Consensus 184 i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~~~~ 253 (263)
...++++|...|++|.+++...|++++++.++.+.++|.||++|++|+.+.++. ..+.+++++.+|+.+
T Consensus 161 e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~ 229 (364)
T PRK09601 161 ELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLA-DGNPYVKKVREIAAK 229 (364)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccc-cccHHHHHHHHHHHH
Confidence 667889999999999888877899898899999999999999999999987663 246678888888765
No 5
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=269.26 Aligned_cols=240 Identities=63% Similarity=1.103 Sum_probs=211.0
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehh
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~ 93 (263)
-.....+...+..+||||.||+|||||||+|++....+++|||||++|+.|.+.+++.++..++.++.|.+..+.++.++
T Consensus 11 ~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lv 90 (390)
T PTZ00258 11 KKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDIT 90 (390)
T ss_pred cchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEE
Confidence 34556677888999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHh
Q 024748 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (263)
Q Consensus 94 d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~ 173 (263)
|+||+....+.+.+++++|+..++.+|++++|+|+|+++++.|..+..||.+++.++++++.+.|+..+++.++++.+..
T Consensus 91 DtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~ 170 (390)
T PTZ00258 91 DIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKR 170 (390)
T ss_pred ECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999998888888999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred hhcc-chhHHHHHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHHHH
Q 024748 174 KRSN-DKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWCV 252 (263)
Q Consensus 174 ~~~~-~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~~~ 252 (263)
.... .........+++++..+|++|.+++...|++++.+.++.+.+++.||++|++|+.+.++....+.+++++..++.
T Consensus 171 ~~~~~~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~ 250 (390)
T PTZ00258 171 KKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVG 250 (390)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHH
Confidence 2111 122344567889999999999999888999999999999999999999999999987762223557778877765
Q ss_pred h
Q 024748 253 L 253 (263)
Q Consensus 253 ~ 253 (263)
+
T Consensus 251 ~ 251 (390)
T PTZ00258 251 E 251 (390)
T ss_pred h
Confidence 4
No 6
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=3.4e-35 Score=264.12 Aligned_cols=227 Identities=42% Similarity=0.605 Sum_probs=202.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
++.+||||.||+|||||||+|++... .+++|||||+.|+.|.+.+++.++++++.+|+|.+..++.++++|.+|+..++
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccchhHH
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~h~~~ 182 (263)
+++.+++++|+.+++.+|+++||+|+|+++.+.|..+..||.+++.++++++.+.|...++++++++.+....+ ....
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~--k~~~ 159 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG--KDKK 159 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc--hhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888764321 3345
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHHHHh
Q 024748 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWCVL 253 (263)
Q Consensus 183 ~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~~~~ 253 (263)
....+++++..+|++|++++...+++++..+++.++++|.||++|++|++++.+..+.+.+...++ |+..
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~ 229 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAA 229 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhh
Confidence 567899999999999999887677888888999999999999999999999877432244555555 7655
No 7
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=204.80 Aligned_cols=209 Identities=31% Similarity=0.460 Sum_probs=163.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC----CcchHHHhhhcC---CCCCCCcceehhhhhc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP----DERFEWLCQLFK---PKSAVPAFLEIHDIAG 97 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~----g~~~~~l~~~~~---~~~~~~~~l~~~d~~g 97 (263)
..+||||.||+|||||||+|++....+++|||+|+.|+.|.+.+. +.++.++..... +....+..++++|++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999998888999999999999998874 345544332221 2224456799999999
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeeccCCC----ceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHh
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP----DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~----~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~ 173 (263)
+..+.+++.+++++++++++.+|++++|+|+|++. .+.+ .+..||.+++.++++++...|++.+++.+.++.+..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99888888889999999999999999999999543 2344 677899999999999999999999999988886554
Q ss_pred hhccc-hhHHHHHH--HH----HHHHHHhh-cCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchh
Q 024748 174 KRSND-KQLKIEHE--LC----QRVKAWLQ-DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (263)
Q Consensus 174 ~~~~~-h~~~~i~~--l~----d~i~~~L~-~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~ 234 (263)
..+.. .......+ .+ ++|..+|+ .|...+...|++++...++.+.+.+.+|++|++|..+.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~ 229 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADL 229 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhc
Confidence 32211 11111112 22 66778887 57776666788888888888888999999999998763
No 8
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.93 E-value=1.5e-24 Score=193.56 Aligned_cols=207 Identities=30% Similarity=0.454 Sum_probs=162.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee----CCcchHHHhhhc---CCCCCCCcceehhhhhccc
Q 024748 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQLF---KPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 27 vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~----~g~~~~~l~~~~---~~~~~~~~~l~~~d~~g~~ 99 (263)
+||||.+|+|||||||+|++....+++|||+|+.|+.|.+.+ ++.++..++... .........++++|++|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999887899999999999998887 445666554321 0011112359999999999
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeeccCCCc---eeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS 176 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~---~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~ 176 (263)
.+.+.+.+++++|++.++.+|++++|+|+|+..+ +.+..+..||..++.++.+++..+|...+++.+.++.+....+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888899999999999999999999996544 4678888999999999999999999999999999888655332
Q ss_pred cc---hhHHHHHHHH----HHHHHHhhcCC-ccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcch
Q 024748 177 ND---KQLKIEHELC----QRVKAWLQDGK-DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNE 233 (263)
Q Consensus 177 ~~---h~~~~i~~l~----d~i~~~L~~G~-~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~ 233 (263)
.. ........++ +++..+|++|. ....-.|++.+.+.+..+++++.+|++|++|..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~D 225 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKAD 225 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHH
Confidence 11 1122223334 77778887765 3333567888888888888889999999999865
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=9.2e-25 Score=188.72 Aligned_cols=189 Identities=23% Similarity=0.269 Sum_probs=141.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|||||+||+|||||+|.|.|..+++ |++|+||+....|.++.++ .++.++||||++.+.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk~~ 70 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPKHA 70 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcchH
Confidence 78999999999999999999999998 9999999999999887653 58999999999998665
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccCCCc-----ee-eecccCCCc----hhHHHHHHHhhhccHHHHHHHHHHHHHH-
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEKS- 172 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~-~l~~~~~P~----~~i~ilde~~~~~d~~~~~k~~~~~~~~- 172 (263)
++.|.+.+...+..+|++++++++.+... ++ .+.....|. ++++.+..... +....+.+...
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~------l~~~~~~~~~~~ 144 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV------LLKLIAFLKKLL 144 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH------HHHHHHHHHhhC
Confidence 56677888999999999999999975321 11 111111121 13333222221 11222222222
Q ss_pred -----hhhccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHHH-----HHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 173 -----MKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 173 -----~~~~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~~-----e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
.+.+ +..+.++..|.+.+..+|++|..+|+ +.+||+++ |+|||. ...+++++||++.|.++.+++
T Consensus 145 ~f~~ivpiS-A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~ 221 (298)
T COG1159 145 PFKEIVPIS-ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE 221 (298)
T ss_pred CcceEEEee-ccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence 2122 26777899999999999999999998 56688774 899999 888899999999999988866
No 10
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=5e-25 Score=185.65 Aligned_cols=181 Identities=20% Similarity=0.293 Sum_probs=133.2
Q ss_pred CCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH--HHhhhcCCCC
Q 024748 7 KSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--WLCQLFKPKS 84 (263)
Q Consensus 7 ~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~--~l~~~~~~~~ 84 (263)
+.++..+++.++..+..|+.+||||+||||||||+|+|+|.+ +|++|.|.+.|+-.. .++.-|+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-----------~Pt~G~v~v~G~v~~li~lg~Gf~--- 101 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-----------KPTSGKVKVTGKVAPLIELGAGFD--- 101 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-----------CCCCceEEEcceEehhhhcccCCC---
Confidence 677889999999999999999999999999999999999994 999999999985322 2233344
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHH-------------HHHHhhhcceeEEeeccCCCceeeecccCCCchhHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSF-------------LSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEV 149 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~-------------~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~i 149 (263)
.+++..||+-+...... .......+ ...++.+...|.+.-+|. ++-..+| ||++
T Consensus 102 ---pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs------ia~~~~p--dILl 170 (249)
T COG1134 102 ---PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS------VATHVEP--DILL 170 (249)
T ss_pred ---cccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh------hhhhcCC--CEEE
Confidence 46777777765443221 11111111 122222222222222221 2235778 9999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhh
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTF 217 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~ 217 (263)
+||.+...|..|.+|+.+++.+++.++.+ |++..+.++|+++ .||++|.+...|++. +.+..|
T Consensus 171 lDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~-i~l~~G~i~~~G~~~----~vi~~Y 238 (249)
T COG1134 171 LDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA-IWLEHGQIRMEGSPE----EVIPAY 238 (249)
T ss_pred EehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee-EEEeCCEEEEcCCHH----HHHHHH
Confidence 99999999999999999999998766554 9999999999999 999999999998765 556655
No 11
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=6.2e-24 Score=178.50 Aligned_cols=185 Identities=15% Similarity=0.220 Sum_probs=136.9
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh---hcCCCC-
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---LFKPKS- 84 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~---~~~~~~- 84 (263)
.+.-+.+.++..+++|++.|++|+|||||||+|++|+|+ ++|++|.|.|+|..+.+... .|.|..
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 356788999999999999999999999999999999999 59999999999988876433 388876
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEee---cc--CCCc-eeeecc-cCCCchhHHHHHHHhh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLR---AF--EDPD-IIHVDD-SVDPVRDLEVISAELR 155 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~---~~--~~~~-~~~l~~-~~~P~~~i~ilde~~~ 155 (263)
.+|..+++.|.+-+....+.. .....++...++..+..-..-+ .. ++.. +-+++. .+.| ++.++|||++
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP--eLlILDEPFS 159 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP--ELLILDEPFS 159 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC--CEEEecCCcc
Confidence 788899999998877654431 1111222223333322111100 00 1111 111111 4778 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++||-..+-..+.+.+.+..+.| |.|+.+++|||++ .+|..|+.+.+|++.
T Consensus 160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l-lmL~kG~~V~~G~v~ 215 (300)
T COG4152 160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL-LMLKKGQTVLYGTVE 215 (300)
T ss_pred CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh-heecCCceEEeccHH
Confidence 99999888877888888777665 9999999999999 999999999998764
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=2.5e-23 Score=178.87 Aligned_cols=178 Identities=19% Similarity=0.214 Sum_probs=135.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+-...++.++++|++++|+||||||||||+|+|+|+ ++|..|.|.++|+.+..+. . .|.||
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ 83 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQ 83 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence 5667889999999999999999999999999999999 5899999999999886533 2 28888
Q ss_pred C-CCCcceehhhhhccccCcccccch--H----HHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEGQGL--G----NSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~~~~--~----~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. ..+..+++.|.+.+++..|.+... . ..+.+.++..+.. .+.+..+..+++ +-+|
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-----~la~r~~~~LSGGerQrv~iArALaQ~~- 157 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-----HLADRPVDELSGGERQRVLIARALAQET- 157 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-----HHhcCcccccChhHHHHHHHHHHHhcCC-
Confidence 8 667899999999999887642111 1 1122223322211 111111222333 4566
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+...-+.++.++++... +.| |+...+.+.||++ ..|++|+++..|...
T Consensus 158 -~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~-i~lk~G~i~a~G~p~ 224 (258)
T COG1120 158 -PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL-ILLKDGKIVAQGTPE 224 (258)
T ss_pred -CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCeEEeecCcc
Confidence 899999999999999988888888888743 443 9999999999999 999999999998753
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=3.4e-23 Score=183.50 Aligned_cols=184 Identities=17% Similarity=0.156 Sum_probs=135.0
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPK 83 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~ 83 (263)
...+.+.++..+++|+++||+||||||||||+|+|+|+ +.|++|.|.+.|.+... .. -.|.|+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 36789999999999999999999999999999999999 58999999999976532 11 136666
Q ss_pred C-CCCcceehhhhhccccCcccccc--hHHHHHHHHhhhccee---EEeeccCC--Ccee--eecccCCCchhHHHHHHH
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEGQG--LGNSFLSHIRAVDGIF---HVLRAFED--PDII--HVDDSVDPVRDLEVISAE 153 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~d~~l---~vv~~~~~--~~~~--~l~~~~~P~~~i~ilde~ 153 (263)
. .++..+|+.|+..+....+.... ....+.+.++..+.-- ..++.+.. ...+ ...-..+| +++++|||
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P--~lliLDEP 163 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP--ELLILDEP 163 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC--CEEEECCC
Confidence 6 56889999999999876664321 1112222223222211 01111110 0000 01115788 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhhhc-cc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+.+.|+..+...++.++++...+ .+ |.+++++.+||++ .+|++|++++.++..
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v-~il~~G~~~~~g~~~ 222 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV-IILNDGKIIAEGTPE 222 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE-EEEeCCEEEEeCCHH
Confidence 99999999999999999888765 33 9999999999999 999999999998543
No 14
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=3.5e-23 Score=174.34 Aligned_cols=182 Identities=17% Similarity=0.171 Sum_probs=131.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----------hhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----------~~~~ 80 (263)
.-|.+.++..+.+|+++|||||||||||||||+|+|.+ +|+.|+|.+.|+++..+ ...|
T Consensus 17 l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-----------~P~~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-----------KPSSGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-----------cCCCceEEECCcccCCCCHHHHHhccceeec
Confidence 34778999999999999999999999999999999995 99999999999877532 2236
Q ss_pred CCCCCCCcceehhhhhccccCcccc------c-chHHHHHHHHhhhcceeEEeeccCCCc------------eeeecc--
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEG------Q-GLGNSFLSHIRAVDGIFHVLRAFEDPD------------IIHVDD-- 139 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~------~-~~~~~~~~~~~~~d~~l~vv~~~~~~~------------~~~l~~-- 139 (263)
|.-+. +..+++.|++.+....+.+ . ...+...+....+-.++..++..+..+ .+.+..
T Consensus 86 Q~~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL 164 (250)
T COG0411 86 QITRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL 164 (250)
T ss_pred ccccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH
Confidence 65544 4589999998876432210 0 000111222233333334443322111 111111
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc-cc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+.+| +++++|||..+..+....+..+.+.++.... .+ |+|+.+..+|||| .+|..|+++.+|+..
T Consensus 165 a~~P--~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri-~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 165 ATQP--KLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRI-VVLNYGEVIAEGTPE 235 (250)
T ss_pred hcCC--CEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEE-EeccCCcCcccCCHH
Confidence 5778 8999999999999999888888888887543 34 9999999999999 999999999998764
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.2e-22 Score=171.37 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=133.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh----hhcCCCC---
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKS--- 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~----~~~~~~~--- 84 (263)
++...++.++++|++++||||||||||||+++|+|+ ++|.+|+|.+.|+...... --|.||.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV 86 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCccccc
Confidence 688999999999999999999999999999999998 5999999999987654332 3488885
Q ss_pred CCCcceehhhhhccccCccccc--c----hHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQ--G----LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~--~----~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
.....+++.|++.++...+.+- . -.+.+.++++.++. ..+.+..+-.+++ +.+| +
T Consensus 87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm-----~~~~~r~i~~LSGGQ~QRV~lARAL~~~p--~ 159 (254)
T COG1121 87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQNP--D 159 (254)
T ss_pred CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCc-----hhhhCCcccccCcHHHHHHHHHHHhccCC--C
Confidence 2234589999999986554321 0 01333444444432 1233444555555 5778 9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++++|||+.+.|+.....+.+.+.++...+.+ |++..+.+.||++ ..|+ +.+.+.|+..
T Consensus 160 lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~v-i~Ln-~~~~~~G~~~ 223 (254)
T COG1121 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLN-RHLIASGPPE 223 (254)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEE-EEEc-CeeEeccChh
Confidence 99999999999999999999999988876655 9999999999999 8887 5566666543
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-22 Score=165.73 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=128.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------HhhhcCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFKPK 83 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~~~~~~~ 83 (263)
-|.+.+++.+..|+++||+|+|||||||++++|+++ +.|++|.|+++|-+..+ ++-.+ .+
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~-~e 83 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLF-GE 83 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceec-CC
Confidence 478999999999999999999999999999999999 59999999999866533 22223 45
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEee-------ccCC--Cceeeec--ccCCCchhHHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLR-------AFED--PDIIHVD--DSVDPVRDLEVISA 152 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~-------~~~~--~~~~~l~--~~~~P~~~i~ilde 152 (263)
..+|+.+++.++..+....+.-. .......+...+..+.+.+ .|.. ...+.+. -.++| +++++||
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~--~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P--~i~vlDE 159 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLS--RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP--SILVLDE 159 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC--CeEEEcC
Confidence 57888999999998876544310 0111111122211122221 1211 1111111 14788 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
|+.+.|+-...+..+.+.+....+. +|.+.+++++||++ .+|++|.+++.|+..
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv-ivlh~Gevv~~gs~~ 218 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV-IVLHKGEVVLEGSIE 218 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE-EEEecCcEEEcCCHH
Confidence 9999999998888887777765343 39999999999999 999999999998764
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=1.5e-21 Score=174.76 Aligned_cols=178 Identities=13% Similarity=0.232 Sum_probs=132.3
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------HhhhcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~~~~~ 82 (263)
+..+...++..|.+|++++|+||+||||||||++|+|++ .|++|.|.++|+++.. ++.+||.
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-----------~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-----------QPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCCCChhhcccceeecC
Confidence 367788999999999999999999999999999999996 8999999999998754 4445666
Q ss_pred CCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
...+| +|++.||++|+....+. .....++.+.++.+. + ..|.+.....+++ +.+| ++
T Consensus 86 YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~----L-~~~~~R~p~qLSGGQqQRVALARAL~~~P--~v 157 (352)
T COG3842 86 YALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG----L-EGFADRKPHQLSGGQQQRVALARALVPEP--KV 157 (352)
T ss_pred cccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcC----c-hhhhhhChhhhChHHHHHHHHHHHhhcCc--ch
Confidence 66655 99999999998763221 112222333332222 1 1122222223343 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++|||+..+|...+++....++++... +. ||+.++...++||| .+|++|++...|+..
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI-~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRI-AVMNDGRIEQVGTPE 222 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccce-EEccCCceeecCCHH
Confidence 9999999999999888877777766543 32 39999999999999 999999988777643
No 18
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.83 E-value=6.9e-22 Score=176.35 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----h--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~--~~~~~~~ 84 (263)
..+...++++|++|+++||+||||||||||+++|+|+ .+|++|.|.++|.++... . ..|.|+.
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~ 88 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQF 88 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEecc
Confidence 4688999999999999999999999999999999999 489999999999875321 1 1256665
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....+.. ......+.+.++.++. ....+..+..+++ ..+| ++++
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~la~aL~~~P--~lll 161 (306)
T PRK13537 89 DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-----ENKADAKVGELSGGMKRRLTLARALVNDP--DVLV 161 (306)
T ss_pred CcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chHhcCchhhCCHHHHHHHHHHHHHhCCC--CEEE
Confidence 456678999998765433211 1111112222222221 0011111222222 5678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+.+.|+......++.+.+....+.+ |+++.++++||++ .+|++|++++.|+.+
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i-~il~~G~i~~~g~~~ 223 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVIEEGRKIAEGAPH 223 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 99999999999999999988887644443 9999999999999 999999998887643
No 19
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=3.5e-21 Score=159.52 Aligned_cols=176 Identities=16% Similarity=0.235 Sum_probs=128.9
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----------HHhhh
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----------WLCQL 79 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~----------~l~~~ 79 (263)
+...+..++.+|.+|++++|+||+|||||||+++|.+++ .|++|.|.++|..+. +++.+
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-----------~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-----------EPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-----------CCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 355678899999999999999999999999999999996 899999999996442 13334
Q ss_pred cCCCCCCCcceehhhhhccccCccccc---chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQ---GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
||....+ .++++.|++.+..-.-++. .-.....+.+..+... .-.++| -..++| +.+|
T Consensus 83 FQ~fnLF-PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~y----P~qLSGGQqQRVAIARALaM~P- 155 (240)
T COG1126 83 FQQFNLF-PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAY----PAQLSGGQQQRVAIARALAMDP- 155 (240)
T ss_pred ccccccc-ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhC----ccccCcHHHHHHHHHHHHcCCC-
Confidence 6655554 5899999998765322211 1111222222222210 012222 112333 5778
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++.++|||++.+||+.+.+.++.+.++...+.| |.+..+.+++||+ .++++|+++..|+
T Consensus 156 -~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrv-iFmd~G~iie~g~ 219 (240)
T COG1126 156 -KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRV-IFMDQGKIIEEGP 219 (240)
T ss_pred -CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheE-EEeeCCEEEEecC
Confidence 899999999999999999999999999877654 9999999999999 9999998887764
No 20
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.7e-21 Score=165.29 Aligned_cols=176 Identities=15% Similarity=0.209 Sum_probs=130.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------------Hh
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------LC 77 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------------l~ 77 (263)
.-.+...++..|+.|+++||||++|||||||+|++.+++ +|++|.|.++|.++.. ++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-----------~PtsG~v~v~G~di~~l~~~~Lr~~R~~IG 86 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-----------RPTSGSVFVDGQDLTALSEAELRQLRQKIG 86 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-----------CCCCceEEEcCEecccCChHHHHHHHhhcc
Confidence 356889999999999999999999999999999999996 8999999999976542 33
Q ss_pred hhcCCCCCCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCc--eeeecc------------cC
Q 024748 78 QLFKPKSAVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDD------------SV 141 (263)
Q Consensus 78 ~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~--~~~l~~------------~~ 141 (263)
.+||.... ....|+.+++.|....... .....++.+. +.++...+..+ ...+++ +.
T Consensus 87 MIFQhFnL-LssrTV~~NvA~PLeiag~~k~ei~~RV~el-------LelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 87 MIFQHFNL-LSSRTVFENVAFPLELAGVPKAEIKQRVAEL-------LELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred EEeccccc-cccchHHhhhhhhHhhcCCCHHHHHHHHHHH-------HHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 34554443 3468999999887654431 1122222222 23333332221 123443 67
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+| ++++.||+++.+||+.-+..++.++++... +- ||.|+-+.++|+|+ ++|++|+++-.|++.
T Consensus 159 ~P--~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV-avm~~G~lvE~G~v~ 227 (339)
T COG1135 159 NP--KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV-AVLDQGRLVEEGTVS 227 (339)
T ss_pred CC--CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh-eEeeCCEEEEeccHH
Confidence 88 899999999999999988888888776543 33 39999999999999 999999998877654
No 21
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=2.6e-21 Score=174.74 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=126.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
..+...++++|.+|+++||+||||||||||+++|+|+ ..|++|.|.++|.++.. .. ..|.|+.
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~ 122 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQF 122 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCC
Confidence 4578899999999999999999999999999999999 48999999999976532 11 1255655
Q ss_pred -CCCcceehhhhhccccCccccc--chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQ--GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|++.+....+... .....+.+.+..++. ....+..+..+++ ..+| ++++
T Consensus 123 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-----~~~~~~~~~~LS~G~kqrv~lA~aL~~~P--~lLi 195 (340)
T PRK13536 123 DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-----ESKADARVSDLSGGMKRRLTLARALINDP--QLLI 195 (340)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhCCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 4556789999887543322110 011111111222211 0011111222232 5678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+.+.|+......++.+.+....+.+ |+++.++++||++ .+|.+|++++.|+.+
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i-~il~~G~i~~~g~~~ 257 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVLEAGRKIAEGRPH 257 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcCHH
Confidence 99999999999999999998887654443 9999999999999 999999999887654
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.2e-20 Score=163.44 Aligned_cols=177 Identities=17% Similarity=0.209 Sum_probs=130.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc---chHH-------Hhhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---RFEW-------LCQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~---~~~~-------l~~~~ 80 (263)
.++...++..|+.|+.++++||||||||||+++|+|++ .|+.|.|.++|+ +..+ ++.+|
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-----------~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-----------TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-----------CCCCceEEECCEeccchhccchhhcceeEEE
Confidence 56777899999999999999999999999999999995 899999999998 4333 44456
Q ss_pred CCCCCCCcceehhhhhccccCcccc----cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEG----QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~----~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|... .+..|++.|++.|+....+. .....++.+.++.+. +..+.+.....+++ +..|
T Consensus 84 Q~YA-LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq-----L~~la~ryP~QLSGGQrQRVALARALA~eP- 156 (345)
T COG1118 84 QHYA-LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ-----LEGLADRYPAQLSGGQRQRVALARALAVEP- 156 (345)
T ss_pred echh-hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc-----ccchhhcCchhcChHHHHHHHHHHHhhcCC-
Confidence 6555 45589999999998755421 112222322233222 11122222223443 5778
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|...++.....+.+.... +. ||+.+++.++|||+ .+|++|++...|+..
T Consensus 157 -~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrv-vvl~~G~Ieqvg~p~ 223 (345)
T COG1118 157 -KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRV-VVLNQGRIEQVGPPD 223 (345)
T ss_pred -CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceE-EEecCCeeeeeCCHH
Confidence 899999999999999988877777777654 32 39999999999999 999999988777654
No 23
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=1.1e-20 Score=159.88 Aligned_cols=177 Identities=14% Similarity=0.192 Sum_probs=130.9
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hhhhc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQLF 80 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~~~~ 80 (263)
.+.+...++.+|+.|+.+++|||+||||||+++||.++ ++|++|.|.++|+++.. ++++.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 46778899999999999999999999999999999999 59999999999987643 33333
Q ss_pred CCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeec----cCCCceeeecc------------cCCCc
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA----FEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~----~~~~~~~~l~~------------~~~P~ 144 (263)
|.- .++.++++.++..+.....+... .+.. +.++.++.+++. |.+.--..++| +.+|
T Consensus 82 Qqi-gLFPh~Tv~eNIa~VP~L~~w~k--~~i~---~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP- 154 (309)
T COG1125 82 QQI-GLFPHLTVAENIATVPKLLGWDK--ERIK---KRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP- 154 (309)
T ss_pred hhc-ccCCCccHHHHHHhhhhhcCCCH--HHHH---HHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC-
Confidence 332 45569999999999876654211 1111 223333343332 11111112333 6788
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++.++|||+...|+..+.+..+.+.++... ++| |+++++.+|.||| ++|++|+++..++.
T Consensus 155 -~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri-~vm~~G~i~Q~~~P 220 (309)
T COG1125 155 -PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI-AVMDAGEIVQYDTP 220 (309)
T ss_pred -CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE-EEecCCeEEEeCCH
Confidence 899999999999999998888777776543 333 9999999999999 99999999877653
No 24
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=7.6e-21 Score=169.38 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=125.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
.++...+++++++|+++||+|+||||||||+++|+|+ +.|++|.|.++|..+.. .. ..|.|+.
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 74 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQY 74 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCC
Confidence 4578889999999999999999999999999999999 48999999999976532 11 1255555
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....+.. ......+.+.++..+.- ...+..+..+++ ..+| ++++
T Consensus 75 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgG~~qrv~la~al~~~p--~lll 147 (302)
T TIGR01188 75 ASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-----EAADRPVGTYSGGMRRRLDIAASLIHQP--DVLF 147 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----hHhCCchhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 455678999888664322211 01111222223332210 001111122232 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+.+.|+......++.+.+....+.+ |++..++.+||++ .+|++|+++..++.+
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v-~~l~~G~i~~~g~~~ 209 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI-AIIDHGRIIAEGTPE 209 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 99999999999999988888877644433 9999999999999 999999998877543
No 25
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1e-21 Score=160.77 Aligned_cols=176 Identities=16% Similarity=0.235 Sum_probs=131.0
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------HhhhcC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFK 81 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~~~~~ 81 (263)
...-.++++.++++|++|||+|||||||||.|.+++|+ +.|++|.|.++|.++.. ++-.|.
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccc
Confidence 34567889999999999999999999999999999999 59999999999988754 333488
Q ss_pred CCC-CCCcceehhhhhccccCccc-ccc-h-----HHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE-GQG-L-----GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~-~~~-~-----~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
||. .++..+++.|+......... ... . .+..++.++.. ++.+. .-..+++ +.
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~----hlr~~----~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT----HLRDS----KAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH----HHhcC----cccccccchHHHHHHHHHHhc
Confidence 987 66779999999887654433 111 0 11222222111 11111 0111222 57
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+| ++.++|||+.+.||..+......+..++..+. .|+..+...+|||+ -++.+|+++..|+.+
T Consensus 157 ~P--~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRa-YIi~~G~vla~G~p~ 224 (243)
T COG1137 157 NP--KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRA-YIISDGKVLAEGSPE 224 (243)
T ss_pred CC--CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheE-EEEecCeEEecCCHH
Confidence 88 89999999999999999887777777766543 29999999999999 888999999998754
No 26
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.6e-20 Score=159.28 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=123.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----HHhhhcCCCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----WLCQLFKPKSAV 86 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~----~l~~~~~~~~~~ 86 (263)
..+...++..|.+|++++||||+|||||||||+|+|+. .|+.|.|.++|+.+. ..+.+||....+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-----------~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~Ll 84 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-----------KPTSGEVLLDGRPVTGPGPDIGYVFQEDALL 84 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCcccCCCCCCEEEEeccCccc
Confidence 56788899999999999999999999999999999995 899999999998763 234456655544
Q ss_pred CcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
.+.++.||+.+...... .......+.+.+..+. +..|.+..-..++| +.+| +++++||
T Consensus 85 -PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~Vg-----L~~~~~~~P~qLSGGMrQRVaiARAL~~~P--~lLLlDE 156 (248)
T COG1116 85 -PWLTVLDNVALGLELRGKSKAEARERAKELLELVG-----LAGFEDKYPHQLSGGMRQRVAIARALATRP--KLLLLDE 156 (248)
T ss_pred -chhhHHhhheehhhccccchHhHHHHHHHHHHHcC-----CcchhhcCccccChHHHHHHHHHHHHhcCC--CEEEEcC
Confidence 58999999999765432 1111223333343332 12233322233444 5778 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G 198 (263)
|+...|.....+..+.+.++... +. ||+.+++-.|.||| .+|..+
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi-vvl~~~ 207 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV-VVLSNR 207 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE-EEecCC
Confidence 99999999888877777666543 22 39999999999999 888765
No 27
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.3e-20 Score=167.85 Aligned_cols=177 Identities=12% Similarity=0.166 Sum_probs=128.9
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------HhhhcCCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKPKSA 85 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~~~~~~~~ 85 (263)
+...++..|..|++++|+||||||||||||+|+|++ .|++|.|.++|+++.. ++.+||....
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-----------~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yAL 86 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-----------EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYAL 86 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCCCChhHCCEEEEeCCccc
Confidence 778899999999999999999999999999999995 8999999999998754 4445665554
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
|.+|++.|+.+|.....+.. .......++++-.++.+-...+. ....+++ ..+| ++.++|||
T Consensus 87 -yPhmtV~~Niaf~Lk~~~~~--k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P--~v~L~DEP 160 (338)
T COG3839 87 -YPHMTVYENIAFGLKLRGVP--KAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKP--KVFLLDEP 160 (338)
T ss_pred -cCCCcHHHHhhhhhhhCCCc--hHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCC--CEEEecCc
Confidence 55999999999987654311 11122222232222221111111 1112332 4678 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++-.|...+......++++... +. ||+..++..+.||| .+|.+|++...|+..
T Consensus 161 lSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri-~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 161 LSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI-VVMNDGRIQQVGTPL 219 (338)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE-EEEeCCeeeecCChH
Confidence 9999999888877777776543 22 39999999999999 999999988777543
No 28
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.9e-20 Score=151.33 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=130.4
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCCC-
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS- 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~~- 84 (263)
-..+++..+.+|+..+|+||||||||||++.|+|. ..|+.|.+.++|..+.. ++. -+.||.
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s 84 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS 84 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence 35678899999999999999999999999999999 58999999999987753 222 266776
Q ss_pred CCCcceehhhhhccccCcccc--c--chHHHHHHHHhhhcceeEEeeccCCCceeeecc----------------cCCCc
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--Q--GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------------SVDPV 144 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------------~~~P~ 144 (263)
.+-+.+++.|++.++.-.+.. + .-.+-..+.+..+|+ ..|...+...+++ ..-|.
T Consensus 85 ~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~-----~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 85 SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-----SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred ccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh-----hhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 455679999999998876631 1 111113344455553 2222222222222 12233
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..++++|||+...|+......+...+++...+.. |++......|||| .+|.+|+++..|..
T Consensus 160 ~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDri-vll~~Grv~a~g~p 225 (259)
T COG4559 160 GRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI-VLLHQGRVIASGSP 225 (259)
T ss_pred CceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhhee-eeeeCCeEeecCCH
Confidence 3699999999999999888877777777765543 9999999999999 99999999998764
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=3.9e-20 Score=155.49 Aligned_cols=185 Identities=19% Similarity=0.175 Sum_probs=129.2
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh------------hcC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------LFK 81 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~------------~~~ 81 (263)
...+..+|++|++.||+|++|+|||||+|+|.|+ ++|++|.|.+.|+++..+.. .||
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-----------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ 92 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-----------LRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQ 92 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-----------CCCCCCeEEEcCcchhccCHHHHHHHHhheeEEee
Confidence 4568889999999999999999999999999999 59999999999988754322 344
Q ss_pred CCCCCCcceehhhhhccccCcccc--cchH-HHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG--QGLG-NSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~--~~~~-~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
.. .++..++++||+++.-..|.. +.+. .-++..++.+.+--...+.| | -.+++ +.|| +
T Consensus 93 ~g-ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~--P--sELSGGM~KRvaLARAialdP--e 165 (263)
T COG1127 93 QG-ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY--P--SELSGGMRKRVALARAIALDP--E 165 (263)
T ss_pred cc-ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC--c--hhhcchHHHHHHHHHHHhcCC--C
Confidence 33 445689999999996554432 1111 11222333332100001111 1 11222 6789 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCCHHH---HHHHhhh
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWKAAD---IEILNTF 217 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~d~~---~e~ir~~ 217 (263)
+.++|||+.+.||......-+.+.++... +. ||++..+..+||++ .+|.+|+++..|+.++-. .-.+|+|
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv-~~L~~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV-AVLADGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE-EEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence 99999999999998877766666665532 22 39999999999999 999999999998764322 1356666
No 30
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.6e-19 Score=151.47 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=133.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------------Hhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------LCQ 78 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------------l~~ 78 (263)
..+.-.++..|++|++|+|||++||||||||++|.|+ .+|+.|.|.++|..+.. ++.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm 85 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNGVQITKLKGKELRKLRRDIGM 85 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecccchhccchHHHHHHHHhcee
Confidence 5678889999999999999999999999999999998 59999999999865532 333
Q ss_pred hcCCCCCCCcceehhhhhccccCccccc----------chHHHHHHHHhhhcce---eEEeeccCCC--ceeeecc--cC
Q 024748 79 LFKPKSAVPAFLEIHDIAGLVRGAHEGQ----------GLGNSFLSHIRAVDGI---FHVLRAFEDP--DIIHVDD--SV 141 (263)
Q Consensus 79 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~----------~~~~~~~~~~~~~d~~---l~vv~~~~~~--~~~~l~~--~~ 141 (263)
+||....+ ..+++++++..++-.+... .-...+++.++.++.+ .+-.+....- .-+-+.. +-
T Consensus 86 IfQ~~nLv-~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 86 IFQQFNLV-PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred EeccCCcc-cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 46654444 4788999988776554321 1112233444444321 1111111000 0000111 34
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCCHHHHHHHh
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILN 215 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir 215 (263)
+| ++.+.|||...+|+..-++.++.+++.... +.| |+.+-+.+.|+|+ .-|.+|+++|+|+.++-..+.+.
T Consensus 165 ~p--kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Ri-igl~~G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 165 QP--KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRI-IGLKAGRIVFDGPASELTDEALD 241 (258)
T ss_pred CC--CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhh-eEecCCcEEEeCChhhhhHHHHH
Confidence 56 899999999999999999999988877643 344 9999999999999 99999999999987654444444
Q ss_pred h
Q 024748 216 T 216 (263)
Q Consensus 216 ~ 216 (263)
+
T Consensus 242 ~ 242 (258)
T COG3638 242 E 242 (258)
T ss_pred H
Confidence 3
No 31
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1e-19 Score=155.40 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH--------HHhhhcCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--------WLCQLFKPK 83 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~--------~l~~~~~~~ 83 (263)
+|--.++..|++|+++|++|+|||||||++++|+|+ +.|++|.|.++|..-. .++.++..+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk 106 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK 106 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhh
Confidence 477889999999999999999999999999999999 5999999999986321 222223222
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeE-------EeeccCCCc---e-eeecccCCCchhHHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFH-------VLRAFEDPD---I-IHVDDSVDPVRDLEVISA 152 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~-------vv~~~~~~~---~-~~l~~~~~P~~~i~ilde 152 (263)
....+.+-+.|...+.+..+.- -...|.+.+...-.++. -++....-. . +..+-.++| +++++||
T Consensus 107 ~ql~Wdlp~~ds~~v~~~Iy~I--pd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p--~VLfLDE 182 (325)
T COG4586 107 LQLWWDLPALDSLEVLKLIYEI--PDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP--KVLFLDE 182 (325)
T ss_pred heeeeechhhhhHHHHHHHHhC--CHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC--cEEEecC
Confidence 2333333344444433322210 01122222211111111 111111000 0 000013667 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
|+.+.|.....+..+-+++.... .. +|++..+.++|+|| .+++.|+++++|+++
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv-~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV-LLIDQGQLVFDGTLA 242 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe-EEeeCCcEeecccHH
Confidence 99999998877777666655432 22 39999999999999 999999999999886
No 32
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=2.9e-20 Score=165.58 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=125.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
..+...+++.+++|+++||+|+||||||||+++|+|+. .|+.|.|.++|.++.. +. ..|.|+.
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-----------~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~ 83 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-----------PPDSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEcccChHHHHhceEEecCC
Confidence 45788999999999999999999999999999999994 8999999999976532 11 1356665
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....+.. ......+.+.++..+.- ...+..+..+++ ..+| ++++
T Consensus 84 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LS~G~~qrv~la~al~~~p--~lli 156 (301)
T TIGR03522 84 NPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----PEQHKKIGQLSKGYRQRVGLAQALIHDP--KVLI 156 (301)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----hHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 556678999988764432211 11111222222222210 001111112222 5678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+.+.|+..++..++.+.+... +.+ |+++.++++||++ .+|++|++++.|+.+
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i-~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRV-IIINKGKIVADKKLD 217 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 9999999999999998888887753 333 9999999999999 999999999887654
No 33
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=6.7e-19 Score=159.16 Aligned_cols=209 Identities=12% Similarity=0.120 Sum_probs=143.3
Q ss_pred CCCCCcCCcccccCCCc-------EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhc
Q 024748 9 KEAPAERPILGRFSSHL-------KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~-------~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~ 80 (263)
+..+++..+...++.|+ +++|+|++|||||||+|.|+|...++ ++.+++|+....|.+.+++
T Consensus 30 ~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---------- 99 (339)
T PRK15494 30 ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---------- 99 (339)
T ss_pred CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC----------
Confidence 34677888888899999 99999999999999999999988765 7899999988888887765
Q ss_pred CCCCCCCcceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCc-----ee-eecccCCCchhHHHHHHH
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDSVDPVRDLEVISAE 153 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~-~l~~~~~P~~~i~ilde~ 153 (263)
.++.++||+|+....+. ...+.+.....++.+|+++.++++..... +. .+.....|. +.+++.
T Consensus 100 -------~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~--IlViNK- 169 (339)
T PRK15494 100 -------TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVP--IFLLNK- 169 (339)
T ss_pred -------eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE--EEEEEh-
Confidence 25899999998754332 22344445566889999999998753221 10 111111221 222222
Q ss_pred hhhccHHHHHHHHHHHHHHhh-----hccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHHH-----HHHhhh-hhhh
Q 024748 154 LRLKDIEFMERRIEDVEKSMK-----RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLT 221 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~-----~~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~~-----e~ir~~-~~~~ 221 (263)
.++.+. ......+.+.+... .-++.+..+++++.+.+...++.|+++|+ +.+||.+. |+|||+ +..+
T Consensus 170 iDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~ 248 (339)
T PRK15494 170 IDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNL 248 (339)
T ss_pred hcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhC
Confidence 111111 01111222221110 01126777899999999999999999998 55677653 899999 7778
Q ss_pred cCCeEEEEEcchhhhhc
Q 024748 222 AKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 222 ~k~i~~~~nv~~~~~~~ 238 (263)
.+++||++.|.++.|++
T Consensus 249 ~~EiP~~~~v~i~~~~~ 265 (339)
T PRK15494 249 QKELPYKLTVQTEKWED 265 (339)
T ss_pred CcccCceEEEEEEEEEE
Confidence 99999999999988875
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-19 Score=155.50 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=130.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----------HHhhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----------WLCQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~----------~l~~~~ 80 (263)
.++...++..+++|+.++|+|+||||||||+++|+|+ +.|..|.|.++|..+. +++.+|
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf 85 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence 5788899999999999999999999999999999999 5899999999987643 134456
Q ss_pred CCCCCCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
|........-++.|-+.|+..... .+.+..++.+.+..+..- .+.+.....+++ +..| +
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-----~~~~r~p~~LSGGqkqRvaIA~vLa~~P--~ 158 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-----ELLDRPPFNLSGGQKQRVAIAGVLAMGP--E 158 (235)
T ss_pred ECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-----hhccCCccccCCcceeeHHhhHHHHcCC--C
Confidence 655544446677777777765443 112233333333333210 111222223333 5678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhc-cc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+.+.|+...+..++.+.++...+ .+ |+++.+..+||++ .+|++|++++.|+.
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v-~vl~~G~i~~~g~p 223 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRV-VVLDDGKILADGDP 223 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEE-EEEECCEEeecCCH
Confidence 999999999999999999999998887653 33 9999999999999 99999999998864
No 35
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.77 E-value=6.4e-20 Score=168.71 Aligned_cols=177 Identities=15% Similarity=0.233 Sum_probs=127.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....++..+++|+++||+||||||||||+++|+|+ .+|.+|.|.++|+.+... .. .|.++
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 4577889999999999999999999999999999999 489999999999765421 11 25565
Q ss_pred C-CCCcceehhhhhccccCcccc------cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~------~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. .++..+++.|++.+....+.. ......+.+.++.++.. ... +..+..+++ ..+|
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~----~~~~~~LSgGerQRv~IArAL~~~P- 158 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFA----DRPVTSLSGGERQRVLLARALAQAT- 158 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhh----cCChhhCCHHHHHHHHHHHHHHcCC-
Confidence 5 455679999998776533211 01111223333333321 111 111222232 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+..+|+......++.++++...+.+ |+++.+.++||++ .+|++|+++..|+.
T Consensus 159 -~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adri-i~l~~G~iv~~G~~ 223 (402)
T PRK09536 159 -PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDEL-VLLADGRVRAAGPP 223 (402)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 899999999999999988888888877644433 9999999999999 99999999888764
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=8.2e-20 Score=156.92 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=122.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++... . ..|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-----------RPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 45778899999999999999999999999999999994 89999999998765321 1 125
Q ss_pred CCCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
.++. .++..+++.|+..+...... .......+.+.++.++. ..+.+..+..+++ ..+|
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~ia~al~~~p- 155 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-----RGAEDLYPAELSGGMKKRVALARALALDP- 155 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 5554 34456788888866432111 01111122222333321 0011111112222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 156 -~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 221 (235)
T cd03261 156 -ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRI-AVLYDGKIVAEGTP 221 (235)
T ss_pred -CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEE-EEEECCeEEEecCH
Confidence 899999999999999999988888877543 433 9999999999999 99999998877653
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.77 E-value=7.6e-20 Score=163.04 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=122.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----H--hhhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l--~~~~~~~~ 84 (263)
.+....+++++++|+++||+|+||||||||+++|+|+ ..|++|.|.++|.++.. . ...|.||.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 85 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQF 85 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEecc
Confidence 4578899999999999999999999999999999999 48999999999876421 1 11255555
Q ss_pred -CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....+. . ......+.+.++..+. ....+..+..+++ ..+| ++++
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-----~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lll 158 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-----ESKADVRVALLSGGMKRRLTLARALINDP--QLLI 158 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----hhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 34456888888765322111 0 0011111111222111 0001111112222 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+...|+......++.+.+....+.+ |+.+.++++||++ .+|.+|+++..++.
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVLESGRKIAEGRP 219 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 99999999999999988888877544443 9999999999999 99999998877654
No 38
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.77 E-value=5.2e-20 Score=166.32 Aligned_cols=177 Identities=13% Similarity=0.136 Sum_probs=125.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.++...+++++++|+++||+|+||||||||+++|+|+. +|++|.|.++|+++..+ . ..|
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-----------~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~ 86 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-----------RPTSGSVIVDGQDLTTLSNSELTKARRQIGM 86 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence 46889999999999999999999999999999999994 89999999999866321 1 123
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.+|. .++...++.|++.+...... ......++.+.++.++.- ...+ .....+++ +.+|
T Consensus 87 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~----~~~~~LSgGqkQRV~IARAL~~~P-- 159 (343)
T TIGR02314 87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHD----SYPSNLSGGQKQRVAIARALASNP-- 159 (343)
T ss_pred EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhh----CChhhCCHHHHHHHHHHHHHHhCC--
Confidence 4444 34456889998876532211 111112223333333210 1111 11122332 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.+.... +.+ |+++.+.++||++ .+|++|+++..|+.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v-~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV-AVISNGELIEQGTV 225 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 899999999999999999988888887643 433 9999999999999 99999999877654
No 39
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=8.1e-20 Score=166.03 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=125.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
......++.++++|++++|+||||||||||+++|+|+. +|++|.|.++|+.+..+. ..|.+|.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 85 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-----------RITSGEIWIGGRVVNELEPADRDIAMVFQNY 85 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 45778899999999999999999999999999999994 899999999998663211 1244444
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+.....+. ......+.+.++.++. ..+.+.....+++ ..+| +++++
T Consensus 86 ~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LSgGq~QRvalARAL~~~P--~llLL 158 (356)
T PRK11650 86 ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL-----EPLLDRKPRELSGGQRQRVAMGRAIVREP--AVFLF 158 (356)
T ss_pred cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-----hhHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 445579999999876432211 1111222233333221 1111111112332 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|....+...+.+.++... +. ||+..++..+||++ .+|++|+++..|+.
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i-~vl~~G~i~~~g~~ 219 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV-VVMNGGVAEQIGTP 219 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEECCH
Confidence 9999999999999888888876543 33 39999999999999 99999999877764
No 40
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=8.2e-19 Score=141.83 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=121.4
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------HhhhcCCCCCCCcc
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKPKSAVPAF 89 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~~~~~~~~~~~~ 89 (263)
...+++.|++++|+||+|||||||+|+++|+. .|.+|.|.++|++... ++.+||.. .+++.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-----------~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEn-NLFaH 85 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-----------TPASGEILINGVDHTASPPAERPVSMLFQEN-NLFAH 85 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhcc-----------CCCCceEEEcCeecCcCCcccCChhhhhhcc-ccchh
Confidence 34678999999999999999999999999995 8999999999987643 34445533 45678
Q ss_pred eehhhhhccccCccccc-c-hHHHHHHHHhhhcceeEEeeccCCCceeeecc-------------cCCCchhHHHHHHHh
Q 024748 90 LEIHDIAGLVRGAHEGQ-G-LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD-------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~-~-~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~-------------~~~P~~~i~ilde~~ 154 (263)
+++..+++++....... . -..++...+..+.. ..|.+.--..+++ ...| |+++|||+
T Consensus 86 LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-----~~~~~RLP~~LSGGqRQRvALARclvR~~P---ilLLDEPF 157 (231)
T COG3840 86 LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-----AGFLKRLPGELSGGQRQRVALARCLVREQP---ILLLDEPF 157 (231)
T ss_pred hhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-----hhHhhhCccccCchHHHHHHHHHHHhccCC---eEEecCch
Confidence 99999999987654311 1 11122222222221 1111110111222 2345 89999999
Q ss_pred hhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 155 RLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
...|+..+.+.+..+.++... +. ||+.+++..+.+++ .++++|++.+.|+.+
T Consensus 158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~-~fl~~Gri~~~g~~~ 215 (231)
T COG3840 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRV-VFLDNGRIAAQGSTQ 215 (231)
T ss_pred hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhce-EEEeCCEEEeeccHH
Confidence 999999999988888877643 22 39999999999999 999999999987654
No 41
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=6e-19 Score=148.71 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----------HhhhcC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LCQLFK 81 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----------l~~~~~ 81 (263)
++.+.++..+.+|+++||+|++|||||||.++|+|+. +|+.|.|.++|+.+.. +..+||
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-----------~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQ 89 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-----------KPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQ 89 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-----------CCCCceEEECCcccCccccchhhccceeEEec
Confidence 6889999999999999999999999999999999995 8999999999965433 122344
Q ss_pred C-CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----------cCCCchhHHHH
Q 024748 82 P-KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------SVDPVRDLEVI 150 (263)
Q Consensus 82 ~-~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------~~~P~~~i~il 150 (263)
. ...+.+..++.+.+.-....+......++..+.++.+..--.+++-+ + ..++| +..+..+++++
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~--P--~eLSGGQ~QRiaIARAL~~~PklLIl 165 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR--P--HELSGGQRQRIAIARALIPEPKLLIL 165 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC--c--hhcChhHHHHHHHHHHhccCCCEEEe
Confidence 2 23444456665555433222221111222333333333211111111 1 12333 23333399999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhhc-c-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKRS-N-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~~-~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||++..+|.......++.+.+..+.. - +|++..++.+|||| .+|++|.++..++.
T Consensus 166 DEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi-~Vm~~G~ivE~~~~ 226 (252)
T COG1124 166 DEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI-AVMDNGQIVEIGPT 226 (252)
T ss_pred cCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe-eeeeCCeEEEeech
Confidence 99999999999999999888876543 2 39999999999999 99999998876543
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=1.7e-19 Score=151.88 Aligned_cols=169 Identities=13% Similarity=0.088 Sum_probs=116.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--Hh--hhcCCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKSA- 85 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~--~~~~~~~~- 85 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|..+.. .. ..|.++..
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-----------KESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 45778899999999999999999999999999999994 8999999999977532 11 12444442
Q ss_pred -CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 86 -VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 86 -~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
.....++.|+..+........ ...+.+.++.++.- ...+ ..+..+++ ..+| +++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~laral~~~p--~llllDE 152 (205)
T cd03226 82 YQLFTDSVREELLLGLKELDAG--NEQAETVLKDLDLY-ALKE----RHPLSLSGGQKQRLAIAAALLSGK--DLLIFDE 152 (205)
T ss_pred hhhhhccHHHHHhhhhhhcCcc--HHHHHHHHHHcCCc-hhcC----CCchhCCHHHHHHHHHHHHHHhCC--CEEEEeC
Confidence 223568888876643221111 12233333333221 1111 11111222 4567 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCc
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 200 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~ 200 (263)
|+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|.+|++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i 204 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV-LLLANGAI 204 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEE
Confidence 99999999999988888877544433 9999999999999 88888865
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.7e-19 Score=152.72 Aligned_cols=174 Identities=13% Similarity=0.147 Sum_probs=118.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~- 84 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|+.+... ...|.++.
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 4577889999999999999999999999999999999 489999999998765321 11244554
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
..+..+++.|+..+...... .......+.+.++..+. ..+.+.....+++ ..+| +++++
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrl~la~al~~~p--~~lll 154 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-----EGLLNRYPHELSGGQQQRVALARALAREP--SLLLL 154 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----hhhhhcChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 34446788888765432211 00111122222222221 0000111112222 4567 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|||+...|+.......+.+.+.... +.+ |+...+.++||++ .+|++|+++..
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G~i~~~ 212 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI-AVMNEGRIVQV 212 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE-EEEECCEEEec
Confidence 9999999999999888888876543 433 9999999999999 88998987543
No 44
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.3e-19 Score=151.69 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=129.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~~~~~~ 82 (263)
..+.++++..++.|++++|+|+||||||||+++|+|+ .++.+|+|.+.|+++..+ +-.|.|
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 5678899999999999999999999999999999999 488899999999987643 224888
Q ss_pred CC-CCCcceehhhhhccccCcccc-cch---HHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEG-QGL---GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~-~~~---~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
+. .++..+|+.|+.-++...... ... ...+.+.+ -.+-...+ ..--.+++ +.+|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lF---P~Lker~~----~~aG~LSGGEQQMLAiaRALm~~P-- 155 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF---PRLKERRN----QRAGTLSGGEQQMLAIARALMSRP-- 155 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHC---hhHHHHhc----CcccCCChHHHHHHHHHHHHhcCC--
Confidence 86 667799999999876543321 000 01111100 00000000 00012222 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||..+.-|..+++..+.++++.+. +.| ++.....++.||. .+|+.|++++.|+.+
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~-yvle~Griv~~G~~~ 222 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRG-YVLENGRIVLSGTAA 222 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEE-EEEeCCEEEEecCHH
Confidence 899999999999999999999999888754 323 7788889999999 999999999998643
No 45
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=7.6e-19 Score=151.55 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=122.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|.++... . ..|
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-----------EPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 46788999999999999999999999999999999994 89999999998765321 1 125
Q ss_pred CCCC-CCCcceehhhhhccccCccc----------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE----------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~----------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
.++. .++..+++.|+..+...... ......++.+.++..+. ..+.+.....+++
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----ADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----HhhhcCCcccCCHHHHHHHHHHH
Confidence 5555 34456888888765321110 00001122222222221 0111111222332
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+.......+.+.+.... +. +|+...+.++||++ .+|++|+++..++.
T Consensus 159 al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 159 ALAQQP--DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRI-VGLKAGEIVFDGAP 230 (243)
T ss_pred HHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEecCCH
Confidence 4678 899999999999999998888888876543 33 39999999999999 99999998876654
No 46
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.76 E-value=1.2e-19 Score=164.88 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=126.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H------hhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L------CQL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l------~~~ 79 (263)
..+...++.+|++|++++|+|+||||||||+++|+|+ .+|+.|.|.++|+++.. + ...
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~ 74 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIG 74 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEE
Confidence 4578899999999999999999999999999999999 48999999999976532 1 112
Q ss_pred cCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.+|. .++.++++.+++.+.....+ .......+.+.++.++. ..+.+.....+++ +.+|
T Consensus 75 ~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL-----~~~~~~~p~~LSGGq~QRV~lARAL~~~p- 148 (363)
T TIGR01186 75 MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL-----EEYEHRYPDELSGGMQQRVGLARALAAEP- 148 (363)
T ss_pred EEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-----chhhhCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 44444 45567899999877643221 11112223333333332 1111111122332 5678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.++... +.| |+++.+.++||+| .+|.+|+++..|+.
T Consensus 149 -~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI-~vl~~G~iv~~g~~ 214 (363)
T TIGR01186 149 -DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI-VIMKAGEIVQVGTP 214 (363)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEeeCCH
Confidence 899999999999999999988888776532 443 9999999999999 99999998877653
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.9e-19 Score=153.17 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=120.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|..+.. .. ..|.++.
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence 4577889999999999999999999999999999999 48999999998865421 11 1244554
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....... ......+.+.++..+. ..+.+..+..+++ ..+| ++++
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qr~~la~al~~~p--~lll 154 (220)
T cd03265 82 LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRP--EVLF 154 (220)
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----HHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 344467888877654221110 0111122222332221 0010111112222 4567 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+|||+...|+...+...+.+.+.... +.+ |+...+..+|+++ .+|++|+++..++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV-AIIDHGRIIAEGT 215 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99999999999999988888877543 433 9999999999999 8999999877654
No 48
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-19 Score=164.10 Aligned_cols=177 Identities=14% Similarity=0.170 Sum_probs=125.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
..+...++..+.+|++++|+||||||||||+++|+|+. +|++|.|.++|+.+.... ..|.+|.
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-----------~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 87 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-----------KPTEGQIFIDGEDVTHRSIQQRDICMVFQSY 87 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 45678899999999999999999999999999999995 899999999997653211 1133343
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++.++++.|++.+....+. .......+.+.++..+. ..+.+.....+++ +.+| +++++
T Consensus 88 ~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl-----~~~~~r~~~~LSgGq~QRVaLARaL~~~P--~lLLL 160 (351)
T PRK11432 88 ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----AGFEDRYVDQISGGQQQRVALARALILKP--KVLLF 160 (351)
T ss_pred ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 44557999999987643221 11112223333333321 1111111122332 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+...++....+.++... +.+ |+..++..+||++ .+|++|++...|+.
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i-~vm~~G~i~~~g~~ 221 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV-IVMNKGKIMQIGSP 221 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999988888877543 333 9999999999999 99999999877754
No 49
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.76 E-value=1.3e-19 Score=164.52 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=124.7
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-C
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-A 85 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~-~ 85 (263)
.....++..++.|++++|+||||||||||+++|+|+. .|+.|.|.++|+.+.... ..|.+|. .
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-----------RQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA 86 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 4567889999999999999999999999999999994 899999999998763211 1133444 4
Q ss_pred CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
++.++++.+++.+...... .......+.+.++..+. ..+.+.....+++ +.+| +++++|
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-----~~~~~~~~~~LSgGq~QRvaLARaL~~~P--~llLLD 159 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-----PGSERKYPGQLSGGQQQRVALARALATSP--GLLLLD 159 (353)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----CchhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEc
Confidence 4558999999987643221 11112223333333321 1111111122332 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|....+.....+++.... +. ||+..++..+||++ .+|++|+++..|+.
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i-~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI-VVMNHGVIEQVGTP 219 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 999999999998888888776543 33 39999999999999 99999999887754
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.76 E-value=3.1e-19 Score=151.35 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=116.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+++... . ..|
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 84 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-----------KPTRGKIRFNGQDLTRLRGREIPFLRRHIGM 84 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEehhhcChhHHHHHHHhceE
Confidence 35778899999999999999999999999999999994 89999999999765321 1 124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|++.+...... .......+.+.++..+. ..+.+.....+++ ..+|
T Consensus 85 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~laral~~~p-- 157 (216)
T TIGR00960 85 VFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGL-----EGKAHALPMQLSGGEQQRVAIARAIVHKP-- 157 (216)
T ss_pred EecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 4554 34446788888765422111 00111222223333321 0011111112222 4667
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 200 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~ 200 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i-~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRT-LTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcC
Confidence 899999999999999999888888876544433 9999999999999 88888763
No 51
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-19 Score=160.05 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=124.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hhh--hcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~--~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|.++.. +.. .|.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v 88 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-----------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLV 88 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEECCEECCCcCccHHHHhhceEEE
Confidence 4688999999999999999999999999999999999 48999999999976532 111 244
Q ss_pred CCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
+|.. .....++.|++.+...... .......+.+.++.++.-. ..+.+.....+++ +.+|
T Consensus 89 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---~~~~~~~~~~LSgGq~qrv~iAraL~~~P-- 163 (287)
T PRK13637 89 FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---EDYKDKSPFELSGGQKRRVAIAGVVAMEP-- 163 (287)
T ss_pred ecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---hhhccCCcccCCHHHHHHHHHHHHHHcCC--
Confidence 4442 2235688888876432211 1111122333333333210 0011111222332 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.+.... +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv-~~l~~G~i~~~g~~ 229 (287)
T PRK13637 164 KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRI-IVMNKGKCELQGTP 229 (287)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 899999999999999999988888877643 433 9999999999999 99999999887754
No 52
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=1.4e-18 Score=152.47 Aligned_cols=192 Identities=19% Similarity=0.088 Sum_probs=126.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|+|++|||||||+|+|+|...++ +++|+||+.+..|.....+ .++.++||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 68999999999999999999998765 8999999998877654432 25889999999865332
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccCCCce----e-eecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHH------
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI----I-HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS------ 172 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~----~-~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~------ 172 (263)
...+...+...++.+|.++.++|+...... . .+.....|. +.+++. .+..+.....+....+.+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~--ilV~NK-~Dl~~~~~~~~~~~~~~~~~~~~~v 141 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPV--VLTRNK-LDNKFKDKLLPLIDKYAILEDFKDI 141 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCE--EEEEEC-eeCCCHHHHHHHHHHHHhhcCCCce
Confidence 222344566778899999999998643211 0 011111121 111111 1111111111112112111
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHH-----HHHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 173 MKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 173 ~~~~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~-----~e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
...+ +..+.+++++.+.+...++.|+.+|+ +..+|.+ .|+||++ +..+.+++||++.+..+.|++
T Consensus 142 ~~iS-A~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 142 VPIS-ALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred EEEe-cCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 1112 25667888999999999999998887 4456654 3899999 668899999999999988865
No 53
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.5e-19 Score=163.68 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....+++++++|+++||+|+||||||||+++|+|+. +|++|.|.++|.++... . ..|
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~ 86 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-----------RPTSGRVLVDGQDLTALSEKELRKARRQIGM 86 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence 56788999999999999999999999999999999994 89999999998765321 1 124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... .......+.+.++..+. ..+.+.....+++ ..+|
T Consensus 87 v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LSgGq~qRv~lAraL~~~p-- 159 (343)
T PRK11153 87 IFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-----SDKADRYPAQLSGGQKQRVAIARALASNP-- 159 (343)
T ss_pred EeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhhCChhhCCHHHHHHHHHHHHHHcCC--
Confidence 4444 34556889998876532211 01111122222222221 0111111112232 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.+.... +.+ |+++.+.++||++ .+|++|+++..|+.
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v-~~l~~G~i~~~g~~ 225 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRV-AVIDAGRLVEQGTV 225 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 899999999999999999988888877543 333 9999999999999 99999998876653
No 54
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=1.1e-18 Score=151.74 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=130.4
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------------Hhhhc
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LCQLF 80 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------------l~~~~ 80 (263)
.+.++..++.|+++.|+|.+|||||||+++|.++ ++|+.|.|.++|.++.. ++.+|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 4678899999999999999999999999999999 59999999999986632 34456
Q ss_pred CCCCCCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
|....+| +.++.|+++|+..... .....+...+.++.+. +..|.+.....+++ +.+| +
T Consensus 113 Q~FaLlP-hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~Vg-----L~~~~~~yp~eLSGGMqQRVGLARAla~~~--~ 184 (386)
T COG4175 113 QSFALLP-HRTVLENVAFGLEVQGVPKAEREERALEALELVG-----LEGYADKYPNELSGGMQQRVGLARALANDP--D 184 (386)
T ss_pred hhhcccc-chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcC-----chhhhhcCcccccchHHHHHHHHHHHccCC--C
Confidence 6555555 8999999999876543 1223344455555553 22333322233443 6788 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|+++||+++.+||-.+.+..+.+.++... .+| |++++..++-+|| ++|++|+++..|+.
T Consensus 185 IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI-aimkdG~ivQ~Gtp 249 (386)
T COG4175 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI-AIMKDGEIVQVGTP 249 (386)
T ss_pred EEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE-EEecCCeEEEeCCH
Confidence 99999999999998887777766555432 233 9999999999999 99999999988864
No 55
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.75 E-value=3.5e-19 Score=152.64 Aligned_cols=177 Identities=10% Similarity=0.113 Sum_probs=120.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh---hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC---QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~---~~~~~ 82 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. .. ..|.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-----------KPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 35778899999999999999999999999999999994 8999999999875421 11 12455
Q ss_pred CC-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
+. .++..+++.|+..+....+.. ......+.+.++..+. ....+.....+++ ..+| ++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~la~al~~~p--~l 154 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----THLRKSKASSLSGGERRRVEIARALATNP--KF 154 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCC--CE
Confidence 54 445567888887654322111 0111112222222211 0000111111222 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|....+...+.+.+....+.+ |+.+.+.++|+++ .+|++|++...++.
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 217 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRA-YIIYEGKVLAEGTP 217 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEEeCH
Confidence 9999999999999998888888776544433 9999999999999 99999998876653
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.4e-19 Score=151.76 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=121.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+++... . ..|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-----------EPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence 45778899999999999999999999999999999994 78999999998765321 1 125
Q ss_pred CCCC-CCCcceehhhhhccccCcc--------c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAH--------E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~--------~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
.++. .++..+++.|+..+..... . .......+.+.++..+. ..+.+.....+++
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----LDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----hhhhCCCcccCCHHHHHHHHHHH
Confidence 5655 3445678888876532110 0 00011112222222221 0011111122232
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|.+|+++..++.
T Consensus 158 al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 229 (241)
T cd03256 158 ALMQQP--KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRI-VGLKDGRIVFDGPP 229 (241)
T ss_pred HHhcCC--CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeecCH
Confidence 4678 899999999999999999888888876543 433 9999999999999 99999998877653
No 57
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.75 E-value=2.1e-19 Score=163.54 Aligned_cols=177 Identities=12% Similarity=0.171 Sum_probs=124.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc--ceeeeCCcchHHHh-----hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE--ARVNIPDERFEWLC-----QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~--G~i~~~g~~~~~l~-----~~~~~~ 83 (263)
..+...++..+..|++++|+||||||||||+++|+|+. .|+. |.|.++|+.+.... ..|.+|
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-----------KAAGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 35778899999999999999999999999999999995 8899 99999987653211 113333
Q ss_pred C-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
. .++..+++.+++.+.....+. ......+.+.++..+. ..+.+.....+++ +.+| +++
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL-----~~~~~~~~~~LSgGq~QRvaLARAL~~~P--~ll 159 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEP--DVL 159 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-----CchhhCChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 3 345688999999876432211 1111222222222221 1111111222332 5678 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhh--ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKR--SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~--~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++|||+...|+...+..++.+.++... +.+ |+.+++..+||++ .+|++|+++..|+.
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri-~vl~~G~i~~~g~~ 223 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKA-GIMKDGRLAAHGEP 223 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 999999999999999988888877654 333 9999999999999 99999999887754
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.75 E-value=3.1e-19 Score=153.34 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=121.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H---hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L---CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l---~~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|..+.. . ...|.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-----------LRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 3567889999999999999999999999999999999 48999999999876432 1 112555
Q ss_pred CC-CCCcceehhhhhccccCccccc------------chHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQ------------GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~------------~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
+. .++..+++.|+..+........ .....+.+.++..+. ....+..+..+++
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----ADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----cchhhCChhhCCHHHHHHHHHHH
Confidence 55 4455678888876543221110 011112222222221 1111111112222
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
..+| ++.++|||+...|+.......+.+.+....+.+ |+.+.+..+||++ .+|++|+++..++
T Consensus 157 al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (236)
T cd03219 157 ALATDP--KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRV-TVLDQGRVIAEGT 226 (236)
T ss_pred HHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEeecC
Confidence 4567 899999999999999999988888876544433 9999999999999 9999999877664
No 59
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.75 E-value=4e-19 Score=151.21 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=120.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H-h--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-C--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l-~--~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. . . ..|.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-----------PPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 45788899999999999999999999999999999994 8999999999875421 1 1 12555
Q ss_pred CC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
+. .++..+++.|+..+.............+...++..+.+ ....+.....+++ ..+| ++++
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrv~laral~~~p--~lll 155 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL----KERRKQLAGTLSGGEQQMLAIARALMSRP--KLLL 155 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh----hhhhhCchhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 55 34456788888765432221111111111112221110 0000111111221 4567 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+|||+...|+......++.+.+....+.+ |+.+.+..+|+++ .+|++|++...++
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (222)
T cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRA-YVLERGRVVLEGT 215 (222)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEE-EEeeCCeEEEeCC
Confidence 99999999999999988888877544433 9999999999999 8999999876654
No 60
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2.2e-19 Score=158.96 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=122.3
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------------Hhh
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LCQ 78 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------------l~~ 78 (263)
++...++.+|.+|++++|+|+||||||||+++|+|+ .+|+.|.|.++|..+.. ++.
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~ 88 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-----------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccccHHHHHhhEEE
Confidence 588999999999999999999999999999999999 48999999999976521 122
Q ss_pred hcCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 79 ~~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
+++... .++ ..++.|++.+...... .......+.+.++.++.. ..+.+.....+++ +.+|
T Consensus 89 v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 89 VFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred EecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----hhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 233211 222 3588888876542221 111112222333332210 1111111222332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.++...+.+ |+++.+.++||++ .+|.+|++++.|+.+
T Consensus 164 --~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri-~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 164 --EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYV-YLLEKGHIISCGTPS 229 (288)
T ss_pred --CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 899999999999999988888888776544433 9999999999999 999999998887643
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.5e-19 Score=152.10 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=120.9
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhcC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFK 81 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~~ 81 (263)
+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++... . ..|.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-----------RPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence 6788899999999999999999999999999999994 89999999998765321 1 1255
Q ss_pred CCC-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++. .++..+++.|+..+....... ......+.+.++..+. ..+.+.....+++ ..+| +
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~la~al~~~p--~ 160 (233)
T cd03258 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----EDKADAYPAQLSGGQKQRVGIARALANNP--K 160 (233)
T ss_pred ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----hhhhhcChhhCCHHHHHHHHHHHHHhcCC--C
Confidence 555 344468888887654221110 0111122222222221 0000111112221 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++++|||+...|+.......+.+.+.... +.+ |+.+.+.++||++ .+|++|+++..++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV-AVMEKGEVVEEGT 224 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999999999999988888877543 433 9999999999999 8999999887664
No 62
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.74 E-value=3.2e-19 Score=161.96 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=124.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-C
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-A 85 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~-~ 85 (263)
.....++.++..|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++.... ..|.+|. .
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~ 84 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-----------HQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 4677899999999999999999999999999999994 899999999998653211 1244444 4
Q ss_pred CCcceehhhhhccccCcc----c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 86 VPAFLEIHDIAGLVRGAH----E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~----~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
++..+++.|++.+..... . ......++.+.++..+. ..+.+.....+++ ..+| ++
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~LSgGq~QRvalArAL~~~P--~l 157 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQL-----AHLADRYPAQLSGGQKQRVALARALAVEP--QI 157 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCC-----chhhhCChhhCCHHHHHHHHHHHHHhcCC--CE
Confidence 455789999998764321 0 01111222233333321 1111111122332 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+...+...+.+.++... +. ||+...+..+||++ .+|++|+++..|+.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri-~vl~~G~i~~~g~~ 221 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV-VVMSQGNIEQAGTP 221 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999998888888877643 33 39999999999999 99999999877654
No 63
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.74 E-value=6.3e-19 Score=151.11 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=117.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--hhhcCCCC-CCCccee
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQLFKPKS-AVPAFLE 91 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--~~~~~~~~-~~~~~l~ 91 (263)
..++.++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|+.+... ...|.++. .++..++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-----------QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLT 70 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCCCChhheEEecCcccCCCCC
Confidence 4578899999999999999999999999999994 89999999998765321 12355554 3445678
Q ss_pred hhhhhccccCcc-cc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 92 IHDIAGLVRGAH-EG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 92 ~~d~~g~~~~~~-~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
+.|+..+..... .. ......+.+.++..+. ....+..+..+++ ..+| +++++|||+.
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEPt~ 143 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGL-----TEAADKRPGQLSGGMKQRVAIARALSIRP--KVLLLDEPFG 143 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCC-----HHHHcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEcCCCc
Confidence 888876542110 00 0111112222222221 0000111112222 4678 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+.......+.+.+.... +.+ |+.+.+.++||++ .+|++|+++..++.
T Consensus 144 gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV-VMLTNGPAANIGQI 199 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEeCCcEecccCc
Confidence 99999999988888876543 333 9999999999999 99999998876643
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5.9e-19 Score=149.04 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=117.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH---hhhcCCCC-CC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AV 86 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l---~~~~~~~~-~~ 86 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++... ...|.++. .+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 81 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-----------LPDSGEVLFDGKPLDIAARNRIGYLPEERGL 81 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCCchhHHHHccEEEeccCCcC
Confidence 34677889999999999999999999999999999994 89999999999776421 11244544 44
Q ss_pred CcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
+..+++.|+..+....... ......+.+.++..+. ....+.....+++ ..+| ++.++||
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~la~al~~~p--~~lllDE 154 (210)
T cd03269 82 YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-----SEYANKRVEELSKGNQQKVQFIAAVIHDP--ELLILDE 154 (210)
T ss_pred CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-----hHHHhCcHhhCCHHHHHHHHHHHHHhcCC--CEEEEeC
Confidence 5567888887654221110 1111122222222221 0000011111221 4567 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|+...|+.......+.+.+....+.+ |+...+.++||++ .+|.+|+++..
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~~ 209 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRV-LLLNKGRAVLY 209 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEE-EEEeCCEEEec
Confidence 99999999998888888776544433 9999999999999 88888887543
No 65
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.9e-19 Score=163.29 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
......++.++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|+.+.... ..|.+|.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-----------DITSGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 34677899999999999999999999999999999994 899999999987653211 1244444
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+....... .....++.+.++..+. ..+.+.....+++ ..+| +++++
T Consensus 85 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL-----~~~~~~~~~~LSgGq~QRvaLAraL~~~P--~lLLL 157 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEP--SVFLL 157 (369)
T ss_pred ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-----hhhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 345578999998775432111 1111222222332221 1111111122332 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+...+..++.+.+.... +. +|+.+.+..+||++ .+|++|+++..++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i-~vl~~G~i~~~g~~ 218 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI-VVLDAGRVAQVGKP 218 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999998888888776543 33 39999999999999 99999998877654
No 66
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4e-19 Score=156.95 Aligned_cols=178 Identities=14% Similarity=0.118 Sum_probs=123.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------HHh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------~l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|..+. .+. ..|.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v 87 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGMV 87 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence 4588899999999999999999999999999999999 4899999999997652 111 1244
Q ss_pred CCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++.. .....++.|++.+...... .......+...++..+. ..+.+.....+++ ..+|
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LS~G~~qrl~laraL~~~p-- 160 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-----EHLKDKPTHCLSFGQKKRVAIAGVLVMEP-- 160 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCC--
Confidence 5542 2235688888765432111 11111222223333322 1111111222222 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.... +.+ |+++.+..+||++ .+|++|+++..|+.+
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri-~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNV-FVMKEGRVILQGNPK 227 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 899999999999999999888888877643 433 9999999999999 999999998887654
No 67
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=3.7e-17 Score=150.03 Aligned_cols=188 Identities=24% Similarity=0.395 Sum_probs=127.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.++++.+...++.=--|||||+||||||||||+|++....++++||||+.|..|.+.+.+. ..+
T Consensus 146 ~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i 209 (390)
T PRK12298 146 PGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE----------------RSF 209 (390)
T ss_pred CCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC----------------cEE
Confidence 4445555555555567999999999999999999999887799999999999999887541 248
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC--Cc-ee-------eecc-----cCCCchhHHHHHHHhh
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED--PD-II-------HVDD-----SVDPVRDLEVISAELR 155 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~--~~-~~-------~l~~-----~~~P~~~i~ilde~~~ 155 (263)
.++|+||++...+.+.+++.+++.+++.+|.+++++|+... .+ .. .+.. ...| .+.+++. ++
T Consensus 210 ~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP--~IlVlNK-iD 286 (390)
T PRK12298 210 VVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP--RWLVFNK-ID 286 (390)
T ss_pred EEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC--EEEEEeC-Cc
Confidence 99999999988777667888999999999999999997521 11 00 0000 0122 1222221 11
Q ss_pred hccHHHHHHHHHHHHHHhh------hccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHHH-----HHHhhh
Q 024748 156 LKDIEFMERRIEDVEKSMK------RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF 217 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~------~~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~~-----e~ir~~ 217 (263)
+.+...+.+.+..+.+... .-++|+..++.++++.|...|+.++.+|+ +..+|++. |+|||.
T Consensus 287 l~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~ 360 (390)
T PRK12298 287 LLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQ 360 (390)
T ss_pred cCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHH
Confidence 1121222222222222211 11238888999999999999999988877 45565543 677776
No 68
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.74 E-value=4.7e-19 Score=150.41 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=117.9
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC-
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS- 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~- 84 (263)
+....++.++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|+.+.. .. ..|.++.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 87 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-----------EPDAGFATVDGFDVVKEPAEARRRLGFVSDST 87 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-----------CCCCceEEECCEEcccCHHHHHhhEEEecCCc
Confidence 5788899999999999999999999999999999994 8999999999876532 11 1244554
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+....+. .......+.+.++..+. ..+.+.....+++ ..+| +++++
T Consensus 88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~illl 160 (218)
T cd03266 88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----EELLDRRVGGFSTGMRQKVAIARALVHDP--PVLLL 160 (218)
T ss_pred ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----HHHHhhhhhhcCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 44556788888765432111 00111122222232221 0000111111222 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
|||+...|+...+...+.+.+....+.+ |+...+..+||++ .+|++|++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i-~~l~~G~i~~ 216 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV-VVLHRGRVVY 216 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEE-EEEECCEEee
Confidence 9999999999999988888877544433 9999999999999 8889897754
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.74 E-value=5.4e-19 Score=150.92 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=116.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh----------hhcC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFK 81 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~----------~~~~ 81 (263)
+....+++++++|+++||+|+||||||||+++|+|+. .|+.|.|.++|+.+.... ..|.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-----------KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEccccchhhHHHhhccEEEE
Confidence 5788999999999999999999999999999999994 899999999987653211 1244
Q ss_pred CCCC---CCcceehhhhhccccCcccc---cchHHHH-HHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 82 PKSA---VPAFLEIHDIAGLVRGAHEG---QGLGNSF-LSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 82 ~~~~---~~~~l~~~d~~g~~~~~~~~---~~~~~~~-~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
++.. ++..+++.|+..+....... ....... .+.+...+.. ..+.+.....+++ ..+
T Consensus 88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (228)
T cd03257 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----EEVLNRYPHELSGGQRQRVAIARALALN 163 (228)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----hhHhhCCchhcCHHHHHHHHHHHHHhcC
Confidence 5442 34467888877543211110 0000110 1222222110 0000111112222 456
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
| +++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|++|+++.
T Consensus 164 p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~ 226 (228)
T cd03257 164 P--KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV-AVMYAGKIVE 226 (228)
T ss_pred C--CEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEeCCEEEe
Confidence 7 899999999999999999888888877643 333 9999999999999 8999998754
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.5e-19 Score=156.60 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=122.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|..+.. ... .|.++
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 86 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-----------LPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence 45788999999999999999999999999999999994 8999999999976531 111 24444
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .....++.+++.+...... .......+.+.++.++. ..+.+.....+++ +.+| ++
T Consensus 87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~LSgG~~qrv~laraL~~~p--~l 159 (274)
T PRK13647 87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----WDFRDKPPYHLSYGQKKRVAIAGVLAMDP--DV 159 (274)
T ss_pred ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----HHHhcCChhhCCHHHHHHHHHHHHHHcCC--CE
Confidence 32 2335688888876432111 00111122222222221 0111111112222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+.......+.+.+....+.+ |+++.+.++||++ .+|++|+++..++.
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 222 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQV-IVLKEGRVLAEGDK 222 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999999999999999988888877644443 9999999999999 99999999877764
No 71
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=5e-19 Score=152.45 Aligned_cols=177 Identities=13% Similarity=0.125 Sum_probs=120.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~- 84 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+... ...|.++.
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 83 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-----------RPDSGTILFGGEDATDVPVQERNVGFVFQHY 83 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECCcCCccccceEEEecCC
Confidence 35678899999999999999999999999999999994 89999999998765321 11244554
Q ss_pred CCCcceehhhhhccccCcccc------cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~------~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
.++..+++.|+..+....... ......+.+.++..+. ..+.+..+..+++ ..+| +
T Consensus 84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~la~al~~~p--~ 156 (239)
T cd03296 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----DWLADRYPAQLSGGQRQRVALARALAVEP--K 156 (239)
T ss_pred cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----hhhhhcChhhCCHHHHHHHHHHHHHhcCC--C
Confidence 344467888887664321110 0011112222232221 0010111111222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 221 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRV-VVMNKGRIEQVGTP 221 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEecCH
Confidence 99999999999999999888888877543 433 9999999999999 88999998776653
No 72
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=7.7e-19 Score=162.97 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=128.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----------Hhhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LCQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----------l~~~~ 80 (263)
-.|+..++..+.+|+++||+|.||||||||+|+|+|.+ .|+.|.|.++|+.+.. +..+|
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-----------~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-----------PPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-----------cCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 36889999999999999999999999999999999995 8999999999987642 11234
Q ss_pred CCCCCCCcceehhhhhccccCcccc------cchHHHHHHHHhhhcceeEEeeccCCCceeeec----------c--cCC
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD----------D--SVD 142 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~------~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~----------~--~~~ 142 (263)
|.-..+ .++++.+|..++...... ..+.....+.+...... .+ -+..+..++ . ..+
T Consensus 90 QEl~L~-p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~---~~--~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 90 QELSLV-PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD---ID--PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred echhcc-CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC---CC--hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 444444 489999999988765542 22333333333333211 00 001111111 1 234
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+ ++.++|||+..++....+...+.+++++.++.+ |.++++.++|||+ .+|.+|+.+...+
T Consensus 164 a--rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri-tVlRDG~~v~~~~ 228 (500)
T COG1129 164 A--RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI-TVLRDGRVVGTRP 228 (500)
T ss_pred C--CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE-EEEeCCEEeeecc
Confidence 4 799999999999999999999999998877654 9999999999999 9999999886644
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.9e-19 Score=151.21 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=118.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh--hcCCCC-CCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVP 87 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~--~~~~~~-~~~ 87 (263)
.+....+++++++|+++||+|+||||||||+++|+|+. +|+.|.|.++|+++..... .|.++. .++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 85 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-----------RPTSGEVLVDGEPVTGPGPDRGYVFQQDALL 85 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECccccCcEEEEecccccc
Confidence 45778899999999999999999999999999999994 8999999999976532211 244444 334
Q ss_pred cceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 88 AFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
..+++.|+..+....+.. ......+.+.++..+. ..+.+.....+++ ..+| +++++|||
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrl~la~al~~~p--~lllLDEP 158 (220)
T cd03293 86 PWLTVLDNVALGLELQGVPKAEARERAEELLELVGL-----SGFENAYPHQLSGGMRQRVALARALAVDP--DVLLLDEP 158 (220)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEECCC
Confidence 457888877654321110 0111122222222221 0000111112222 4578 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhh--cCCccccCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQ--DGKDVRLGD 205 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~--~G~~~~~g~ 205 (263)
+...|+.......+.+.+.... +.+ |+...+..+||++ .+|+ +|+++..++
T Consensus 159 t~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~~~G~i~~~~~ 217 (220)
T cd03293 159 FSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRV-VVLSARPGRIVAEVE 217 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE-EEEECCCCEEEEEEE
Confidence 9999999999988888876433 333 9999999999999 8888 688776544
No 74
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.74 E-value=6e-19 Score=149.24 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=118.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+.... ..|.++.
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-----------EPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 35778899999999999999999999999999999994 899999999987653211 1244444
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+...... .......+.+.++..+. ..+.+..+..+++ ..+| ++.++
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qr~~laral~~~p--~llll 154 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----EHLLDRKPKQLSGGQRQRVALGRAIVREP--KVFLM 154 (213)
T ss_pred hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----HHHHhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 33446788888765422111 01111122222222221 0000111111221 4567 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|||+...|+...+...+.+.+.... +.+ |+...+..+|+++ .+|++|+++..
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~g~~~~~ 212 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI-AVMNDGQIQQI 212 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEec
Confidence 9999999999999988888877543 433 9999999999999 88899987654
No 75
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.3e-19 Score=158.24 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch-----------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF----------------- 73 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~----------------- 73 (263)
.++...++++|.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 88 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-----------LPDTGTIEWIFKDEKNKKKTKEKEKVLEKLV 88 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEEeceecccccccccccccccccc
Confidence 35889999999999999999999999999999999994 88999999976432
Q ss_pred ------------HHHhh--hcCCCC--CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCcee
Q 024748 74 ------------EWLCQ--LFKPKS--AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDII 135 (263)
Q Consensus 74 ------------~~l~~--~~~~~~--~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~ 135 (263)
..... .|.+|. ......++.|++.+...... .......+.+.++.++.- ..+.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~ 164 (305)
T PRK13651 89 IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD----ESYLQRSPF 164 (305)
T ss_pred cccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC----hhhhhCChh
Confidence 11111 133332 12224688888876532211 111122233333333221 011111122
Q ss_pred eecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 136 HVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 136 ~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
.+++ +.+| +++++|||+...|+......++.+.++...+.+ |+++.+.++||++ .+|++|
T Consensus 165 ~LSgGqkqrvalA~aL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv-~vl~~G 241 (305)
T PRK13651 165 ELSGGQKRRVALAGILAMEP--DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT-IFFKDG 241 (305)
T ss_pred hCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE-EEEECC
Confidence 2332 4678 899999999999999999888888877644443 9999999999999 999999
Q ss_pred CccccCCC
Q 024748 199 KDVRLGDW 206 (263)
Q Consensus 199 ~~~~~g~~ 206 (263)
+++..++.
T Consensus 242 ~i~~~g~~ 249 (305)
T PRK13651 242 KIIKDGDT 249 (305)
T ss_pred EEEEECCH
Confidence 98887754
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=6.6e-19 Score=151.76 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|.++.. .. ..|.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 82 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-----------EITSGDLIVDGLKVNDPKVDERLIRQEAGMV 82 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECCcCChhHHHHhhceEEE
Confidence 45678899999999999999999999999999999994 8999999999876531 11 1245
Q ss_pred CCC-CCCcceehhhhhccccC-ccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRG-AHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~-~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++..+++.++..+... ... .......+.+.++..+. ...-+.....+++ ..+|
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~G~~qrv~la~al~~~p-- 155 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----AERAHHYPSELSGGQQQRVAIARALAVKP-- 155 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----hHHHhcChhhcCHHHHHHHHHHHHHhcCC--
Confidence 554 34446788888765421 111 00111122222222211 0000111111221 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++.++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|+++..++.+
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL-IFIDKGRIAEDGDPQ 221 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeeCCHH
Confidence 899999999999999999988888876544443 9999999999999 999999998776543
No 77
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.74 E-value=9.2e-19 Score=147.91 Aligned_cols=170 Identities=19% Similarity=0.161 Sum_probs=113.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+.. .. ..|.++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-----------GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence 35678899999999999999999999999999999994 8999999999875431 11 124555
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .+..+++.|+..+...... .......+.+.++..+. ..+-+.....+++ ..+| ++
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~laral~~~p--~l 155 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-----EGLRDRSPFTLSGGQKQRVAIAGVLAMDP--DI 155 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-----HhhhcCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 42 2345788887755322111 00111122222222221 0000111112222 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
+++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|.+|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRV-IVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCCC
Confidence 9999999999999999988888877644333 9999999999999 7777663
No 78
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.73 E-value=1.1e-18 Score=148.16 Aligned_cols=169 Identities=18% Similarity=0.110 Sum_probs=114.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH---------h--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l---------~--~~ 79 (263)
.+....++.++++|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-----------RPTSGEVRVDGTDISKLSEKELAAFRRRHIG 85 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-----------CCCceeEEECCEehhhcchhHHHHHHhhcEE
Confidence 46788899999999999999999999999999999994 89999999998765321 1 12
Q ss_pred cCCCC-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++. .++..+++.|+..+....... ......+.+.++..+. ..+.+..+..+++ ..+|
T Consensus 86 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~la~al~~~p- 159 (218)
T cd03255 86 FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----GDRLNHYPSELSGGQQQRVAIARALANDP- 159 (218)
T ss_pred EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----chhhhcChhhcCHHHHHHHHHHHHHccCC-
Confidence 44554 345567888887664322111 0011122222332221 0000111112222 4677
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
+++++|||+...|+...+...+.+.+... .+.+ |+.+.+. +||++ .+|++|+
T Consensus 160 -~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v-~~l~~G~ 217 (218)
T cd03255 160 -KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRI-IELRDGK 217 (218)
T ss_pred -CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEE-EEeeCCc
Confidence 89999999999999999998888887754 2433 9999887 99999 8888775
No 79
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.73 E-value=7.6e-19 Score=148.14 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=118.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~- 84 (263)
.+....+++.+.+|++++|+|+||||||||+++|+|+. +|++|.|.++|..+... ...|.++.
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-----------KPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-----------CCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 46788899999999999999999999999999999994 89999999998765321 11255554
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
.++..+++.|++.+........ ...+.+.++..+.- ...+ .....+++ ..+| +++++||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~la~al~~~p--~llllDE 152 (208)
T cd03268 82 GFYPNLTARENLRLLARLLGIR--KKRIDEVLDVVGLK-DSAK----KKVKGFSLGMKQRLGIALALLGNP--DLLILDE 152 (208)
T ss_pred ccCccCcHHHHHHHHHHhcCCc--HHHHHHHHHHcCCH-HHHh----hhHhhCCHHHHHHHHHHHHHhcCC--CEEEECC
Confidence 4455788888876643221100 11122222222110 0000 00111221 4567 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|+...|+...+...+.+.+....+. +|+...+..+|+++ .+|++|+++..
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v-~~l~~g~i~~~ 207 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI-GIINKGKLIEE 207 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE-EEEECCEEEec
Confidence 9999999999998888887654333 39999999999999 88998987543
No 80
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.5e-18 Score=146.71 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=114.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-CCCcc
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~~~~~ 89 (263)
.+++++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|..+... ...|.++. .++..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 84 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-----------TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAH 84 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEcCcCCHhHccEEEEecccccCCC
Confidence 789999999999999999999999999999994 89999999998765321 11244444 34456
Q ss_pred eehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 90 LEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
+++.|+..+....... ......+.+.++.++.- ...+ .....+++ ..+| +++++|||+.
T Consensus 85 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~ia~al~~~p--~llllDEP~~ 157 (211)
T cd03298 85 LTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEK----RLPGELSGGERQRVALARVLVRDK--PVLLLDEPFA 157 (211)
T ss_pred CcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHh----CCcccCCHHHHHHHHHHHHHhcCC--CEEEEcCCcc
Confidence 7888887654321110 01111222333333210 0011 11111221 4567 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
..|+...+...+.+.+.... +.+ |+.+.+.++||++ .+|++|+++.
T Consensus 158 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~ 209 (211)
T cd03298 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV-VFLDNGRIAA 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE-EEEECCEEee
Confidence 99999999988888876532 333 9999999999999 8999998654
No 81
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=5.4e-19 Score=155.64 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|+.+.. ... .|.++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-----------KPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 35788999999999999999999999999999999994 8999999999876531 111 23444
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .....++.|++.+...... .......+.+.++.++.- .+.+..+..+++ ..+| ++
T Consensus 86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS~Gq~qrl~laraL~~~p--~l 158 (277)
T PRK13652 86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-----ELRDRVPHHLSGGEKKRVAIAGVIAMEP--QV 158 (277)
T ss_pred CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-----hHhcCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 32 2235678887754322111 111111122222322210 000111112222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++|||+...|+.......+.+.+.... +.+ |+.+.+.++||++ .+|.+|+++..|+.+
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv-~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI-YVMDKGRIVAYGTVE 223 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCeEEEECCHH
Confidence 9999999999999999988888877543 433 9999999999999 999999998877643
No 82
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4e-19 Score=157.44 Aligned_cols=178 Identities=14% Similarity=0.057 Sum_probs=122.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~--~~ 79 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|+.+.. .. ..
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-----------QPTSGTVTIGERVITAGKKNKKLKPLRKKVG 88 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCCcEEEECCEECccccccchHHHHHhhEE
Confidence 45889999999999999999999999999999999994 8999999999976521 11 12
Q ss_pred cCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.+|.. .....++.|++.+...... .......+.+.++.++.- ....+..+..+++ +.+|
T Consensus 89 ~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 89 IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP----EELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCC----hhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 444431 1224688888766432111 111112223333333210 0011111222332 5678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.++... +.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 165 --~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv-~~l~~G~i~~~g~~ 230 (290)
T PRK13634 165 --EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI-VVMHKGTVFLQGTP 230 (290)
T ss_pred --CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 899999999999999999888888877543 433 9999999999999 99999999887754
No 83
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=5e-19 Score=156.61 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=121.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~--~~ 79 (263)
.+....++..+.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|+.+.. .. ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig 88 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGYHITPETGNKNLKKLRKKVS 88 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhceE
Confidence 4578999999999999999999999999999999999 48999999999976521 11 12
Q ss_pred cCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.++.. ....+++.|++.+....+. .......+.+.++.++.- ..+.+..+..+++ ..+|
T Consensus 89 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 89 LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLS----EDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----hhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 444442 1224688888765432111 111111222222222210 0011111122332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+....+.+ |+++.+.++||++ .+|++|+++..++.
T Consensus 165 --~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 229 (287)
T PRK13641 165 --EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDV-LVLEHGKLIKHASP 229 (287)
T ss_pred --CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 899999999999999999888888877544433 9999999999999 99999998877753
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.73 E-value=7.9e-19 Score=149.25 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=119.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..|.++.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 83 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-----------RPTSGTAYINGYSIRTDRKAARQSLGYCPQF 83 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEecccchHHHhhhEEEecCc
Confidence 45788999999999999999999999999999999994 8999999999876532 11 1244444
Q ss_pred -CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++...++.++..+....+. . ......+.+.++..+.- ...+ .....+++ ..+| ++++
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~la~al~~~p--~lll 156 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKAN----KRARTLSGGMKRKLSLAIALIGGP--SVLL 156 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHh----ChhhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 34446788888765432111 0 11111222222222210 0000 11111221 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+|||+...|+...+...+.+.+... +.+ |+.+.+.++||++ .+|++|+++..++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 215 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRI-AIMSDGKLRCIGS 215 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 9999999999999988888877653 232 9999999999999 8999999887664
No 85
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.73 E-value=5e-19 Score=151.53 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=120.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------H--hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l--~~~~~~ 82 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|+.|+|.++|..+.. . ...|.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-----------LPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 4678899999999999999999999999999999999 48999999999865421 1 112555
Q ss_pred CC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
+. .++..+++.++..+....+... ........++..+. +....+..+..+++ ..+| ++.+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~l~~~~~----l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~ill 154 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALPRR-SRKIPDEIYELFPV----LKEMLGRRGGDLSGGQQQQLAIARALVTRP--KLLL 154 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcCcc-hHHHHHHHHHHHHh----HHHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 55 3445678888876543222110 01111111121111 00011111111221 4567 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+...|+.......+.+.+.... +.+ |+.+.+..+|+++ .+|.+|+++..++.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~g~i~~~~~~ 216 (230)
T TIGR03410 155 LDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRY-YVMERGRVVASGAG 216 (230)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999999999888888876542 333 9999999999999 99999998877654
No 86
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=7.1e-19 Score=151.27 Aligned_cols=178 Identities=11% Similarity=0.064 Sum_probs=120.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..|.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-----------RATSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-----------CCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 45788899999999999999999999999999999994 8999999999876532 11 12555
Q ss_pred CC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
+. .++..+++.|+..+.............+.+.++....+-...+ .....+++ ..+| ++++
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~----~~~~~LS~G~~qrl~la~al~~~p--~ill 160 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI----QRAGTMSGGEQQMLAIGRALMSQP--RLLL 160 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHh----CchhhCCHHHHHHHHHHHHHHhCC--CEEE
Confidence 54 3444678888876542211111111111111111110000000 01111221 4567 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+...|+...+...+.+.+....+.+ |+.+.+.++||++ .+|++|+++..++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 221 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRG-YVLENGHVVLEDTG 221 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEE-EEEeCCEEEeeCCH
Confidence 99999999999998888888876544433 9999999999999 99999999877754
No 87
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.73 E-value=1.1e-18 Score=149.09 Aligned_cols=182 Identities=16% Similarity=0.114 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------h--hcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------Q--LFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~--~~~ 81 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+.... ...|++|.|.++|+++.... . .|.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 86 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLI------PGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCCeEEEECCEEhhhcchHHHHHHhhEEEE
Confidence 46788899999999999999999999999999999992000 00688999999998764321 1 255
Q ss_pred CCC-CCCcceehhhhhccccCcccc-c--chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEG-Q--GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~-~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++ .+++.|+..+....... . .....+.+.++..+.- ...+ .......+++ ..+|
T Consensus 87 ~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~--~~~~~~~LSgG~~qrv~la~al~~~p-- 160 (227)
T cd03260 87 FQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVK--DRLHALGLSGGQQQRLCLARALANEP-- 160 (227)
T ss_pred ecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHh--ccCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 555 334 67888887654322110 0 0112222333333210 0000 0000112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... . +|+.+.+.++||++ .+|.+|+++..++.
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRT-AFLLNGRLVEFGPT 224 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEE-EEEeCCEEEEecCc
Confidence 899999999999999999988888877543 3 39999999999999 99999998877654
No 88
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.1e-18 Score=150.53 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=120.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------H--hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l--~~~~~~ 82 (263)
.+....+++++++|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. . ...|.+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-----------PRDAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 45778899999999999999999999999999999994 8999999999865421 1 122555
Q ss_pred CC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
+. .++..+++.|+..+...... .......+.+.++..+. ....+.....+++ ..+| +
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~ 157 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----EHLRDSMGQSLSGGERRRVEIARALAANP--K 157 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----HHHhhcchhhCCHHHHHHHHHHHHHhcCC--C
Confidence 55 34556788888765432111 00111112222222211 0000111112222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+....+.+ |+...+.++||++ .+|++|+++..++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 221 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERA-YIVSQGHLIAHGTP 221 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEE-EEEeCCeEEeeCCH
Confidence 99999999999999988888877776544443 9999999999999 99999998877654
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.73 E-value=1.1e-18 Score=147.65 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------Hh--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LC--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~--~~~ 80 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|+|.++|.++.. .. ..|
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-----------TPSRGQVRIAGEDVNRLRGRQLPLLRRRIGV 83 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence 46788899999999999999999999999999999994 7999999999876531 11 124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... .......+.+.++..+.- ... +..+..+++ ..+|
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~----~~~~~~LS~G~~qrl~la~al~~~p-- 156 (214)
T TIGR02673 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKA----DAFPEQLSGGEQQRVAIARAIVNSP-- 156 (214)
T ss_pred EecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhh----hCChhhCCHHHHHHHHHHHHHhCCC--
Confidence 4554 34446788888765422111 001111222222222210 000 001111221 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
+++++|||+...|+.......+.+.+....+.+ |+...+..+||++ .+|++|+
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i-~~l~~G~ 214 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRV-IILDDGR 214 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEecCCC
Confidence 899999999999999999988888876544433 9999999999998 7777763
No 90
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4.4e-19 Score=163.10 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=123.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----------hhhcC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFK 81 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----------~~~~~ 81 (263)
+...+++++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++... ...|.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-----------~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv 111 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-----------EPTRGQVLIDGVDIAKISDAELREVRRKKIAMV 111 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-----------CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEE
Confidence 678899999999999999999999999999999994 89999999998765321 11245
Q ss_pred CCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
+|. .++..+++.|++.+...... ......++.+.++.++. ..+.+.....+++ ..+| +
T Consensus 112 ~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL-----~~~~~~~~~~LSgGq~QRv~LArAL~~~P--~ 184 (400)
T PRK10070 112 FQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGL-----ENYAHSYPDELSGGMRQRVGLARALAINP--D 184 (400)
T ss_pred ECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----ChhhhcCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 554 44557899998876532211 11111222223333321 1111111122332 5678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+.... +.+ |+.+.+.++||++ .+|++|+++..++.
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri-~vL~~G~i~~~g~~ 249 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI-AIMQNGEVVQVGTP 249 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE-EEEECCEEEecCCH
Confidence 99999999999999999988888876532 333 9999999999999 99999998876643
No 91
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=5.6e-19 Score=161.39 Aligned_cols=176 Identities=10% Similarity=0.161 Sum_probs=123.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-C
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-A 85 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~-~ 85 (263)
+....++.++..|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+..+. ..|.+|. .
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-----------~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 96 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-----------TPDSGRIMLDGQDITHVPAENRHVNTVFQSYA 96 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 4567889999999999999999999999999999994 899999999998763211 1133344 4
Q ss_pred CCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
++..+++.|++.+.....+. ......+.+.++.... ..+.+.....+++ +.+| +++++|
T Consensus 97 lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~p~~LSgGq~QRVaLARaL~~~P--~llLLD 169 (375)
T PRK09452 97 LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-----EEFAQRKPHQLSGGQQQRVAIARAVVNKP--KVLLLD 169 (375)
T ss_pred cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----chhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 55689999999875432211 1111222222222221 1111111112332 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|....+.....+.++... +. ||+..++..+||++ .+|++|++...|+.
T Consensus 170 EP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri-~vl~~G~i~~~g~~ 229 (375)
T PRK09452 170 ESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI-VVMRDGRIEQDGTP 229 (375)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 999999999999888888877643 33 39999999999999 99999998877653
No 92
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.73 E-value=1.1e-18 Score=158.79 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=119.3
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH---------h--hhcCCCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKS 84 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l---------~--~~~~~~~ 84 (263)
.+++++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+... . ..|.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-----------RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 689999999999999999999999999999994 89999999998765311 1 1144444
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++..+++.|++.+.............+.+.++..+. ..+.+.....+++ +.+| +++++|
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LSgGqkqRvalAraL~~~p--~lllLD 156 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI-----GHLLGRLPGRLSGGEKQRVAIGRALLSSP--RLLLMD 156 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEc
Confidence 4455789999887643221111111122222222221 1111111112232 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|+...+..++.+.+.... +.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 216 (354)
T TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV-VVLEDGRVAAAGPI 216 (354)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEEECCH
Confidence 999999999999988888877643 333 9999999999999 99999998877654
No 93
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-18 Score=150.26 Aligned_cols=177 Identities=13% Similarity=0.201 Sum_probs=121.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....+++.+++|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..|.++
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-----------TPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-----------CCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence 45678899999999999999999999999999999994 89999999999765421 1 124555
Q ss_pred C-CCCcceehhhhhccccCcc----c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAH----E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~----~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. .++..+++.|+..+..... . .......+.+.++..+. ..+.+.....+++ ..+|
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p- 157 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRI-----NHLADRRLTDLSGGQRQRAFLAMVLAQDT- 157 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCC-----HHHHcCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 4 3344678888876542110 0 00111122222222221 0001111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+....+.+ |+...+.++|+++ .+|++|++...++.
T Consensus 158 -~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 222 (255)
T PRK11231 158 -PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHL-VVLANGHVMAQGTP 222 (255)
T ss_pred -CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEE-EEEECCeEEEEcCH
Confidence 899999999999999999988888876544433 9999999999999 99999998876653
No 94
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.9e-18 Score=140.08 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=130.8
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-----------HHhh
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WLCQ 78 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-----------~l~~ 78 (263)
+..+...++..|+++.+.+||||+|||||||++++..+...+. . -...|.|.++|+++. +++.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~---~---~r~~G~v~~~g~ni~~~~~d~~~lRr~vGM 92 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP---G---ARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc---C---ceEEEEEEECCeeccCCCCCHHHHHHHhee
Confidence 4667889999999999999999999999999999998853221 1 124699999988653 2344
Q ss_pred hcCCCCCCCcceehhhhhccccCccccc--chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 79 LFKPKSAVPAFLEIHDIAGLVRGAHEGQ--GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 79 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
+||....+ .++++|++.++...++-. .+...+...++.+.+.=.|-|-.++.. ..++| +.+|
T Consensus 93 VFQkPnPF--p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa-~~LSGGQQQRLcIARalAv~P- 168 (253)
T COG1117 93 VFQKPNPF--PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKP- 168 (253)
T ss_pred eccCCCCC--CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCc-cCCChhHHHHHHHHHHHhcCC-
Confidence 46544444 499999999987766522 233334444555543323333222111 11333 6788
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRS----NDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~----~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||++.+||..-.+..+.+.+++..- .||+|..+.++.|+. +++..|+++..|+.
T Consensus 169 -eVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~t-aFf~~G~LvE~g~T 232 (253)
T COG1117 169 -EVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGPT 232 (253)
T ss_pred -cEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhh-hhhcccEEEEEcCH
Confidence 8999999999999998888777777776432 249999999999999 88889998877653
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=1.3e-18 Score=147.27 Aligned_cols=170 Identities=14% Similarity=0.051 Sum_probs=115.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------H--hhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------L--CQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l--~~~~ 80 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++.. . ...|
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 82 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-----------LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV 82 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence 35778899999999999999999999999999999994 8999999999875431 1 1124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... .......+.+.++..+. ....+.....+++ ..+|
T Consensus 83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p-- 155 (214)
T cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL-----SHKHRALPAELSGGEQQRVAIARAIVNSP-- 155 (214)
T ss_pred EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----HHHhhCChhhcCHHHHHHHHHHHHHHcCC--
Confidence 5554 34556788888765432111 11111222222333221 0000111111222 4677
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
++.++|||+...|+...+...+.+.+....+.+ |+...+..+||++ .+|++|+
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i-~~l~~G~ 213 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRV-IALERGK 213 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 899999999999999999888888876544433 9999999999999 8888775
No 96
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=7.7e-19 Score=160.68 Aligned_cols=175 Identities=14% Similarity=0.208 Sum_probs=123.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------HhhhcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~~~~~~~ 84 (263)
.+...++..+.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+.. ++.+||..
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~- 100 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-----------QPTAGQIMLDGVDLSHVPPYQRPINMMFQSY- 100 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEeCCC-
Confidence 4567889999999999999999999999999999995 8999999999986532 23334433
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++.++++.|++.+.....+. ....+++.+.++..+. ..+.+.....+++ +.+| +++++
T Consensus 101 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L-----~~~~~~~~~~LSgGq~QRVaLARAL~~~P--~lLLL 173 (377)
T PRK11607 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM-----QEFAKRKPHQLSGGQRQRVALARSLAKRP--KLLLL 173 (377)
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 445689999999876432211 1111222233333221 1111111122332 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|....+.....+.+.... +. ||+..++..+||++ .+|++|++...|+.
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri-~vl~~G~i~~~g~~ 234 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI-AIMNRGKFVQIGEP 234 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEeCCEEEEEcCH
Confidence 9999999999988877777666532 33 39999999999999 99999999877754
No 97
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.72 E-value=3.2e-18 Score=144.89 Aligned_cols=169 Identities=18% Similarity=0.183 Sum_probs=112.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--hhcCCCCC-CC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP 87 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~ 87 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+++.... ..|.++.. ++
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-----------KPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-----------CCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 34678899999999999999999999999999999994 899999999997664221 12444442 11
Q ss_pred --cceehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 88 --AFLEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 88 --~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
...++.|+..+...... .......+.+.++..+. ..+.+..+..+++ ..+| ++
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~al~~~p--~l 153 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL-----SELADRQIGELSGGQQQRVLLARALVQDP--DL 153 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC-----HHHHhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 23688888765432110 00011122222222221 0010111112222 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
+++|||+...|+.......+.+.+....+.+ |+.+.+.++||++ .+|++|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEcCc
Confidence 9999999999999999988888876544333 9999999999999 777765
No 98
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.1e-18 Score=153.09 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=120.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----------hhhc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLF 80 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----------~~~~ 80 (263)
+....++.++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... ...|
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-----------~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-----------EPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 4578899999999999999999999999999999994 89999999998765311 1124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... .......+.+.++..+. ..+.+..+..+++ ..+|
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~Gq~qrv~lAral~~~p-- 179 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL-----EGWEHKYPDELSGGMQQRVGLARALAVDP-- 179 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----HhHhhCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 5554 34456788888765432111 00111122222222221 0010111112222 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+.+.+.++||++ .+|++|++...++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 245 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRI-AIMKDGRLVQVGTP 245 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 899999999999999999988888776533 333 9999999999999 89999998776653
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=6.3e-19 Score=155.90 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hhh--h
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--L 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~~--~ 79 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+ ..|+.|.|.++|..+.. +.. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDITITHKTKDKYIRPVRKRIG 88 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhheE
Confidence 4689999999999999999999999999999999999 48999999999876521 111 2
Q ss_pred cCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.+|.. .....++.|++.+...... .......+.+.++.++.- ..+.+.....+++ +.+|
T Consensus 89 ~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~LSgGq~qrv~laraL~~~p 164 (286)
T PRK13646 89 MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFS----RDVMSQSPFQMSGGQMRKIAIVSILAMNP 164 (286)
T ss_pred EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC----hhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 344431 1223478888876432211 011111222222222210 0011111222332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.++... +.+ |+++.+.++||++ .+|++|+++..++.
T Consensus 165 --~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri-~~l~~G~i~~~g~~ 230 (286)
T PRK13646 165 --DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV-IVMKEGSIVSQTSP 230 (286)
T ss_pred --CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 899999999999999999988888877543 433 9999999999999 99999999887754
No 100
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.72 E-value=1.1e-18 Score=153.04 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=120.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------Hh--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LC--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~--~~~ 80 (263)
.+....+++++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++.. .. ..|
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 88 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-----------APDHGEILFDGENIPAMSRSRLYTVRKRMSM 88 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence 35678899999999999999999999999999999994 8999999999876531 11 124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccc-hHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~-~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
.++. .++..+++.|+..+...... ... ....+.+.+...+. ....+..+..+++ ..+|
T Consensus 89 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LSgGq~qrv~laral~~~p- 162 (269)
T PRK11831 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-----RGAAKLMPSELSGGMARRAALARAIALEP- 162 (269)
T ss_pred EecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 5554 34456788888765321111 000 01112222222221 0000111112222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+...+.++|+++ .+|++|+++..++.
T Consensus 163 -~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 228 (269)
T PRK11831 163 -DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHA-YIVADKKIVAHGSA 228 (269)
T ss_pred -CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEE-EEEECCEEEEeCCH
Confidence 899999999999999999888888876543 333 9999999999999 89999998877653
No 101
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.72 E-value=2.3e-18 Score=145.60 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=115.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. .. ..|.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-----------EPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 35677899999999999999999999999999999994 8999999999876521 11 1255
Q ss_pred CCC-CCCcceehhhhhccccCc-cc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGA-HE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~-~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++..+++.|+..+.... .. .......+.+.++..+. ...-+..+..+++ ..+|
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~la~al~~~p-- 154 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-----ADKADAYPAQLSGGQQQRVAIARALAMNP-- 154 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----HhHhhhCccccCHHHHHHHHHHHHHhcCC--
Confidence 555 344467888887664211 11 00111122222222211 0000111112222 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 200 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~ 200 (263)
+++++|||+...|+...+...+.+.+....+.+ |+...+.++||++ .+|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i-~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV-IFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCCcC
Confidence 899999999999999999888888877644433 9999999999999 88887753
No 102
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.72 E-value=2.4e-18 Score=149.10 Aligned_cols=176 Identities=13% Similarity=0.157 Sum_probs=119.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------------Hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LC 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------------l~ 77 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. ..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-----------QPEAGTIRVGDITIDTARSLSQQKGLIRQLR 84 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEccccccccchhhHHHHhh
Confidence 45788899999999999999999999999999999994 7899999998865421 11
Q ss_pred --hhcCCCC-CCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 78 --QLFKPKS-AVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 78 --~~~~~~~-~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
..|.++. .++..+++.|++.+....... ......+.+.++..+. ....+.....+++
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-----AGKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred hhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----cchhhCChhhCChHHHHHHHHHHHH
Confidence 1255554 344467888887653211000 0111122222222221 0011111112222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
..+| +++++|||+...|+...+...+.+.+....+.+ |+...+.++|+++ .+|++|+++..++
T Consensus 160 ~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 227 (250)
T PRK11264 160 AMRP--EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRA-IFMDQGRIVEQGP 227 (250)
T ss_pred hcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 4567 899999999999999998888888776544433 9999999999999 9999999887764
No 103
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=5.3e-17 Score=142.58 Aligned_cols=128 Identities=34% Similarity=0.535 Sum_probs=108.1
Q ss_pred CCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCC
Q 024748 8 SKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVP 87 (263)
Q Consensus 8 ~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~ 87 (263)
.-+.++++.+...++-=--|||||.||||||||+++++.....|++|||||+.|+-|.|.+.+.
T Consensus 143 ~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~---------------- 206 (369)
T COG0536 143 PGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG---------------- 206 (369)
T ss_pred CCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC----------------
Confidence 3456677777777777678999999999999999999999999999999999999999998542
Q ss_pred cceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhcc
Q 024748 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d 158 (263)
..+.+.|.||++.+++.+.+++.+|+.+++++..++|++|..... ..+|..++..+..++..-.
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~EL~~Y~ 270 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRNELEKYS 270 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCccc-------CCCHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999999999999999999986322 2567777777776665444
No 104
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.72 E-value=3.4e-18 Score=148.99 Aligned_cols=173 Identities=14% Similarity=0.083 Sum_probs=119.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh--hcCCCC-CCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVP 87 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~--~~~~~~-~~~ 87 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+..... .|.++. .++
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~ 93 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-----------TPSAGELLAGTAPLAEAREDTRLMFQDARLL 93 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEHHHhhCceEEEecCccCC
Confidence 45678899999999999999999999999999999994 8999999998876543221 244444 344
Q ss_pred cceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
..+++.|++.+.... .....+.+.++..+. ..+.+.....+++ ..+| +++++|||+.
T Consensus 94 ~~~tv~enl~~~~~~----~~~~~~~~~l~~~gl-----~~~~~~~~~~LSgGqkqrl~laraL~~~p--~lllLDEPt~ 162 (257)
T PRK11247 94 PWKKVIDNVGLGLKG----QWRDAALQALAAVGL-----ADRANEWPAALSGGQKQRVALARALIHRP--GLLLLDEPLG 162 (257)
T ss_pred CCCcHHHHHHhcccc----hHHHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCC
Confidence 457888887654211 011222222333221 0000111112222 4567 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+.......+.+.+.... +. +|+...+..+|+++ .+|.+|+++..++.
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i-~~l~~G~i~~~~~~ 218 (257)
T PRK11247 163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV-LLIEEGKIGLDLTV 218 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeeccc
Confidence 99999988888888776432 33 39999999999999 99999998776543
No 105
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.9e-18 Score=150.13 Aligned_cols=177 Identities=10% Similarity=0.092 Sum_probs=121.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------HhhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~~~~~~ 82 (263)
.+....++..+.+|++++|+|+||||||||+++|+|+ .+|++|.|.++|..+.. ....|.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-----------YKPTGGTILLRGQHIEGLPGHQIARMGVVRTF 86 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence 4577889999999999999999999999999999999 48999999999876421 1122445
Q ss_pred CC-CCCcceehhhhhccccCcc----------c-----cc--chHHHHHHHHhhhcceeEEeeccCCCceeeecc-----
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAH----------E-----GQ--GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----- 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~----------~-----~~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----- 139 (263)
+. .++..+++.|++.+..... . .. .....+.+.++..+. ..+.+.....+++
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~G~~qr 161 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----LEHANRQAGNLAYGQQRR 161 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----hhhhhCChhhCCHHHHHH
Confidence 55 4455688888876542110 0 00 000111111111110 0111111112222
Q ss_pred -------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+.......+.+.+.... +.+ |+...+.++||++ .+|++|++++.++.
T Consensus 162 v~la~al~~~p--~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~~~~~ 238 (255)
T PRK11300 162 LEIARCMVTQP--EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI-YVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHhcCC--CEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEecCCH
Confidence 4678 899999999999999999888888876543 333 9999999999999 99999999877653
No 106
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=2.2e-18 Score=157.63 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=125.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----------HhhhcC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LCQLFK 81 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----------l~~~~~ 81 (263)
-|...++..+.+|++.||+|.||||||||+++|.|.+ +|++|+|.++|+.+.. ++.++|
T Consensus 18 ~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-----------~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-----------QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-----------cCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 3667899999999999999999999999999999995 9999999999987632 222344
Q ss_pred CCCCCCcceehhhhhccccCcccc-----cchHHHHHHHHhhhccee----EEeecc-CCC-ceeeec-ccCCCchhHHH
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDGIF----HVLRAF-EDP-DIIHVD-DSVDPVRDLEV 149 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~-----~~~~~~~~~~~~~~d~~l----~vv~~~-~~~-~~~~l~-~~~~P~~~i~i 149 (263)
.... ..++|+.|++-++...... .....++.+..+.+..-+ .+-+.. +.. .+-.+. -..++ ++++
T Consensus 87 HF~L-v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a--~iLI 163 (501)
T COG3845 87 HFML-VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA--RLLI 163 (501)
T ss_pred cccc-ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC--CEEE
Confidence 3333 4489999999888754321 111122222223332211 111111 000 000000 02456 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
+|||+..+-+...++....++.+...+++ |.+.++.++|||+ .+|..|+.+..
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv-TVLR~Gkvvgt 221 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV-TVLRRGKVVGT 221 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee-EEEeCCeEEee
Confidence 99999999999999999999988877765 9999999999999 99999997644
No 107
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.8e-18 Score=151.85 Aligned_cols=177 Identities=17% Similarity=0.178 Sum_probs=117.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------HHh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------~l~--~~~~ 81 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+ .+|+.|.|.++|+++. ... ..|.
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 82 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKPLDYSKRGLLALRQQVATV 82 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCccEEEECCEEcccccCCHHHHHhheEEE
Confidence 4578899999999999999999999999999999999 4899999999987652 111 1244
Q ss_pred CCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++.. .....++.++..+...... .......+.+.++..+. ..+.+..+..+++ ..+|
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrl~laraL~~~p-- 155 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA-----QHFRHQPIQCLSHGQKKRVAIAGALVLQA-- 155 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----HhHhcCCchhCCHHHHHHHHHHHHHHcCC--
Confidence 5442 1223345555544211111 00111111222222211 0111111222232 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+....+.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 220 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAV-YVLRQGQILTHGAP 220 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 899999999999999999988888877544433 9999999999999 89999998877653
No 108
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.72 E-value=2.8e-18 Score=149.34 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=122.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++.. .. ..|.++
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-----------RPDAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-----------CCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 45788899999999999999999999999999999994 8999999999976532 11 125555
Q ss_pred C-CCCcceehhhhhccccCcc----c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAH----E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~----~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. .++..+++.|+..+..... . .......+.+.++.++.- .+. +..+..+++ ..+|
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~----~~~~~~LS~G~~qrl~la~al~~~p- 156 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLA----DRDMSTLSGGERQRVHVARALAQEP- 156 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhh----cCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 5 3445678888876542110 0 001111222233332210 111 111112222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+....+.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 157 -~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 157 -KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV-VVLDGGRVVAAGPP 221 (256)
T ss_pred -CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCCEEEecCH
Confidence 899999999999999999888888877544433 9999999999999 99999998877654
No 109
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=3.1e-18 Score=141.89 Aligned_cols=184 Identities=16% Similarity=0.132 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------
Q 024748 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------- 75 (263)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------- 75 (263)
|.++..-|+++.+.++..|..|+++.|||.||||||||+|+|+|. +.|++|.|.++|.++.+
T Consensus 11 f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 11 FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred ecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceecccCCHHHHh
Confidence 556777889999999999999999999999999999999999999 59999999999987753
Q ss_pred --HhhhcCCCC-CCCcceehhhhhccccCcccc--------cchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----
Q 024748 76 --LCQLFKPKS-AVPAFLEIHDIAGLVRGAHEG--------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----- 139 (263)
Q Consensus 76 --l~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----- 139 (263)
++.+||... .....+++.++..+.....+. ..+...|.+.+...+..+.-. .+ ..+-.+++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenr--L~-~~iglLSGGQRQa 156 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR--LS-DRIGLLSGGQRQA 156 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhh--hc-ChhhhccchHHHH
Confidence 555677543 566689999999886543221 223344555555554432210 00 11112222
Q ss_pred -------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 140 -------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS------NDKQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 140 -------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~------~~h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
..-| +++++||-+...||...+-..+.-.+++... .||+++....+-+|+ .+|++|+++.+
T Consensus 157 lsL~MAtl~~p--kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~Rl-ImLh~G~IvlD 230 (263)
T COG1101 157 LSLLMATLHPP--KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL-IMLHSGKIVLD 230 (263)
T ss_pred HHHHHHhcCCC--cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeE-EEEeCCeEEEE
Confidence 3456 8999999999999987777666655555432 249999999999999 99999999976
No 110
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1e-18 Score=153.69 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=121.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hhh--hcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~--~~~ 81 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. ... .|.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-----------KPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCccEEEECCEECccccchHHHHHhheEEE
Confidence 35788999999999999999999999999999999994 8999999999976521 111 244
Q ss_pred CCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++.. .....++.|+..+...... .......+.+.++.++. ..+.+.....+++ ..+|
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~LS~Gq~qrv~laral~~~p-- 156 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGM-----EGFENKPPHHLSGGQKKRVAIAGILAMKP-- 156 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----chhhcCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 4442 2234688888765421111 11111222333333321 1111111112222 4677
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.++...+.+ |+.+.+.++||++ .+|++|+++..++..
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i-~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV-YVMSDGKIIKEGTPK 222 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 899999999999999999988888877644433 9999999999999 999999988877543
No 111
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.72 E-value=1.5e-18 Score=149.31 Aligned_cols=174 Identities=14% Similarity=0.073 Sum_probs=115.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCC-C
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKP-K 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~-~ 83 (263)
.+....+++.+.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..|.+ +
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~ 102 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-----------QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCceEEEECCEEccccchhhcccEEEEcCC
Confidence 45788899999999999999999999999999999994 8999999998865421 11 11333 2
Q ss_pred -CCCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 84 -SAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 84 -~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
..++..+++.|+..+....+. .......+...++.... ....+..+..+++ ..+| +++
T Consensus 103 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~G~~qrl~la~al~~~p--~ll 175 (236)
T cd03267 103 KTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDL-----EELLDTPVRQLSLGQRMRAEIAAALLHEP--EIL 175 (236)
T ss_pred ccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 234456777777655332111 01111111112222110 0000111112222 4678 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
++|||+...|+...+...+.+.+.... +. +|+.+.+.++||++ .+|.+|+++..
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~ 235 (236)
T cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRV-LVIDKGRLLYD 235 (236)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEec
Confidence 999999999999999988888877543 33 39999999999999 88888887543
No 112
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.3e-18 Score=153.44 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=121.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.++...++..|.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. +. ..|.++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 88 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-----------EAESGQIIIDGDLLTEENVWDIRHKIGMVFQ 88 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEECCcCcHHHHHhhceEEEc
Confidence 34788999999999999999999999999999999994 8999999999976532 11 124444
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .....++.|++.+...... .......+.+.++.++. ..+.+.....+++ ..+| ++
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LSgGq~qrv~lAral~~~p--~l 161 (279)
T PRK13650 89 NPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGM-----QDFKEREPARLSGGQKQRVAIAGAVAMRP--KI 161 (279)
T ss_pred ChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCC-----HhHhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 32 3345788888876532211 11111222333333322 1111111222332 5678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+.......+.+.+.... +.+ |+...+ ..||++ .+|.+|+++..++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri-~~l~~G~i~~~g~~ 224 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRV-LVMKNGQVESTSTP 224 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 9999999999999999988888877643 443 999988 589999 99999998877654
No 113
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.2e-18 Score=149.75 Aligned_cols=177 Identities=15% Similarity=0.211 Sum_probs=121.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++... ...|.++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-----------PPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-----------CCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 35778899999999999999999999999999999994 89999999999765321 1124455
Q ss_pred C-CCCcceehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. ..+..+++.|++.+...... .......+...++.++. ..+-+.....+++ ..+|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~laral~~~p- 166 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----KPLAHRLVDSLSGGERQRAWIAMLVAQDS- 166 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----HHHhcCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 4 34456788888765421110 00011122223333321 0010111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 167 -~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i-~~l~~G~i~~~~~~ 232 (265)
T PRK10575 167 -RCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL-VALRGGEMIAQGTP 232 (265)
T ss_pred -CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEecCH
Confidence 899999999999999999888888876543 333 9999999999999 89999998876653
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=99.71 E-value=2.9e-18 Score=146.11 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=116.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|..+..+ . ..|
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 83 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-----------RPSAGKIWFSGHDITRLKNREVPFLRRQIGM 83 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence 45678899999999999999999999999999999994 89999999998765321 1 125
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... .......+.+.++..+.- ... +.....+++ ..+|
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~----~~~~~~LS~G~~qrv~laral~~~p-- 156 (222)
T PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKA----KNFPIQLSGGEQQRVGIARAVVNKP-- 156 (222)
T ss_pred EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhh----hCCchhCCHHHHHHHHHHHHHHcCC--
Confidence 5554 33456788888765421111 111111122222222210 000 111111221 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|+++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~ 217 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRM-LTLSDGHLHG 217 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEcc
Confidence 899999999999999988888888876543333 9999999999999 8899898654
No 115
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.71 E-value=3.2e-18 Score=147.59 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=120.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H---hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L---CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l---~~~~~~ 82 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. +|++|.|.++|..+.. . ...|.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-----------RPDEGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 35788899999999999999999999999999999994 8999999999876531 1 112455
Q ss_pred CC-CCCcceehhhhhccccCccc---------c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE---------G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~---------~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
+. .++..+++.|++.+...... . ......+.+.++..+. ....+..+..+++
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----ADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHH
Confidence 54 34556788888765422110 0 0011112222222221 0011111112222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+......++.+.+... +. +|+.+.+.++|+++ .+|++|+++..++.
T Consensus 159 ~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 159 MQDP--KLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKV-TVLHQGSVLAEGSL 226 (242)
T ss_pred hcCC--CEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEE-EEEECCeEEeeCCH
Confidence 4567 89999999999999999998888887653 33 39999999999999 99999998877653
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.3e-18 Score=148.66 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=121.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+... ...|.++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-----------EPTSGEIFIDGEDIREQDPVELRRKIGYVIQ 82 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence 35678899999999999999999999999999999994 89999999998764321 1125555
Q ss_pred C-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
. .++..+++.|+..+....... ......+.+.++..+.-- ..+.+.....+++ ..+| +++
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~LS~G~~qrv~laral~~~p--~ll 157 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---AEFADRYPHELSGGQQQRVGVARALAADP--PLL 157 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---HHHHhcChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 5 344467888888664322110 011112222233222110 0000111111222 4567 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++|||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|++|+++..++
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 219 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRI-AIMKNGEIVQVGT 219 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999999998888888877543 433 9999999999999 8999999887654
No 117
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.2e-18 Score=153.09 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=119.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....++.+|.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. +. ..|.+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-----------RPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF 83 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEECCccccHHHHHhheEEEE
Confidence 45889999999999999999999999999999999994 8999999999876532 11 12444
Q ss_pred CCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 83 KSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 83 ~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
+.. .+...++.|++.+...... .......+.+.++..+. ..+.+.....+++ +.+| +
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~ 156 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL-----EKYRHRSPKTLSGGQGQCVALAGILTMEP--E 156 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----HHHhcCCcccCCHHHHHHHHHHHHHHcCC--C
Confidence 441 2335688888765432211 00111122222222221 1111111122222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+......++.+.++...+.+ |+.+.+ ..||++ .+|++|+++..++.
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v-~~l~~G~i~~~g~~ 219 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRI-IVMDRGKIVLEGEP 219 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEE-EEEECCEEEEECCH
Confidence 99999999999999999988888877644443 999998 469999 99999998877754
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.71 E-value=3.6e-18 Score=148.91 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=120.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....+++++++|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..|.++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-----------SPDSGEVRLNGRPLADWSPAELARRRAVLPQ 83 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence 45778899999999999999999999999999999994 8999999999875432 11 124555
Q ss_pred C-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c------CC
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S------VD 142 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~------~~ 142 (263)
. .++..+++.|+..+....... ......+.+.++..+. ....+..+..+++ . .+
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCC-----HhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 4 333567888887654322110 0011112222222221 0011111112222 2 36
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHh-hhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~-~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
| +++++|||+...|+...+...+.+.+.. ..+.+ |+...+..+||++ .+|.+|+++..++.
T Consensus 159 p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 225 (258)
T PRK13548 159 P--RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRI-VLLHQGRLVADGTP 225 (258)
T ss_pred C--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE-EEEECCEEEeeCCH
Confidence 7 8999999999999999988888888765 33433 9999999999999 89999998876653
No 119
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.1e-18 Score=147.74 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=119.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-----------HH--h
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WL--C 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-----------~l--~ 77 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+. .. .
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-----------MPRSGTLNIAGNHFDFSKTPSDKAIRELRRN 83 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEecccccccchhhHHHHHhh
Confidence 35778899999999999999999999999999999994 899999999987541 11 1
Q ss_pred hhcCCCC-CCCcceehhhhhcccc-Cccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 QLFKPKS-AVPAFLEIHDIAGLVR-GAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 ~~~~~~~-~~~~~l~~~d~~g~~~-~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.++. .++..+++.++..+.. .... .......+.+.++..+.- ..++ .....+++ ..
T Consensus 84 i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~----~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 84 VGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYAD----RFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred eEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhh----CChhhCCHHHHHHHHHHHHHhc
Confidence 1255554 3444678888765321 1100 001111222222222210 1111 11111221 45
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+...+...+.+.+....+.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 159 ~p--~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i-~~l~~g~i~~~~~~ 225 (242)
T PRK11124 159 EP--QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRV-VYMENGHIVEQGDA 225 (242)
T ss_pred CC--CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 67 899999999999999999988888876544443 9999999999999 99999998877653
No 120
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.3e-18 Score=146.74 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=117.8
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-CCCcc
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVPAF 89 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~~~~~ 89 (263)
.++..+.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|+.+... ...|.++. .++..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 85 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-----------TPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSH 85 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCeecCcCChhhccEEEEecccccccC
Confidence 689999999999999999999999999999994 89999999998765321 11244544 44556
Q ss_pred eehhhhhccccCcc-c-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 90 LEIHDIAGLVRGAH-E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 90 l~~~d~~g~~~~~~-~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
+++.|++.+..... . .......+.+.++.++. ..+.+.....+++ ..+| +++++|||+.
T Consensus 86 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~lllLDEP~~ 158 (232)
T PRK10771 86 LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----EDLLARLPGQLSGGQRQRVALARCLVREQ--PILLLDEPFS 158 (232)
T ss_pred CcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----HHHHhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCCcc
Confidence 78888876542111 0 00111122222333221 0010111111222 4677 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+...++..+.+.+.... +.+ |+.+.+.++|+++ .+|.+|++...++.
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g~i~~~g~~ 214 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS-LVVADGRIAWDGPT 214 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 99999999888888876543 333 9999999999999 99999998877653
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.8e-18 Score=152.43 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=120.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~--~~ 79 (263)
.+....+++++++|++++|+|+||||||||+++|+|+. .|++|.|.++|+++.. .. ..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 88 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-----------VPTQGSVRVDDTLITSTSKNKDIKQIRKKVG 88 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccccccCHHHHHhheE
Confidence 35788999999999999999999999999999999994 8999999999876531 11 12
Q ss_pred cCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.++.. .....++.|+..+...... .......+.+.++..+.- ..+.+..+..+++ ..+|
T Consensus 89 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (280)
T PRK13649 89 LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS----ESLFEKNPFELSGGQMRRVAIAGILAMEP 164 (280)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC----hhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 455542 1223588887765422111 111111122222222210 0000111112222 4667
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+....+. +|+.+.+..+||++ .+|.+|+++..++.
T Consensus 165 --~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 229 (280)
T PRK13649 165 --KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFV-YVLEKGKLVLSGKP 229 (280)
T ss_pred --CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999998888887654333 39999999999999 99999998877653
No 122
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.4e-18 Score=148.86 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=120.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
......+++++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+... ...|.++
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 88 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-----------TPAHGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-----------CCCCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence 34678899999999999999999999999999999994 88999999998765321 1125555
Q ss_pred C-CCCcceehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
. .++..+++.|+..+...... .......+.+.++..+. ..+.+..+..+++ ..+|
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~Gq~qrv~laral~~~p- 162 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-----THLADQSVDTLSGGQRQRAWIAMVLAQET- 162 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----HHHhcCCcccCChHHHHHHHHHHHHhcCC-
Confidence 4 33445788887755321110 00011112222222221 0011111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|++|+++..++.
T Consensus 163 -~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 228 (265)
T PRK10253 163 -AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL-IALREGKIVAQGAP 228 (265)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 899999999999999999888888876542 333 9999999999999 99999998877654
No 123
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.71 E-value=1.4e-18 Score=158.75 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=122.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc----chH--------HH---
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE----RFE--------WL--- 76 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~----~~~--------~l--- 76 (263)
.+...++.++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+ .+. ..
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-----------~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-----------PVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 4567889999999999999999999999999999994 899999999985 221 11
Q ss_pred hhhcCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 77 CQLFKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 77 ~~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
...|.+|. .++..+++.|++.+...... .......+.+.++.+.+ ..+.+.....+++ +.
T Consensus 107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL-----~~~~~~~~~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGL-----AQWADKKPGELSGGMQQRVGLARAFAM 181 (382)
T ss_pred CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 11234444 34457899999877542211 11111223333333321 1111111122332 56
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.++... +.+ |+++.+.++||++ .+|++|+++..|+.
T Consensus 182 ~P--~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI-~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 182 DA--DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI-AIMEGGRIIQHGTP 249 (382)
T ss_pred CC--CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 78 899999999999999998888888776543 333 9999999999999 99999999877754
No 124
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.2e-18 Score=144.28 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=113.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hh--hhcCCCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QLFKPKS 84 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~--~~~~~~~ 84 (263)
.++.++.+ +++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..|.++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-----------KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 78899999 999999999999999999999994 8999999998876421 11 1245555
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++..+++.|+..+.............+.+.++..+. ....+.....+++ ..+| +++++|
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllD 156 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----DHLLNRYPAQLSGGEKQRVALARALAAQP--ELLLLD 156 (214)
T ss_pred CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----HhHhhcCcccCCHHHHHHHHHHHHHhcCC--CEEEEc
Confidence 3444678888876543211100011122222222221 0000111112222 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
||+...|+...+...+.+.+.... +.+ |+.+.+..+|+++ .+|++|+++..
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~ 213 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRI-VVMEDGRLQYI 213 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEE-EEEECCEEEec
Confidence 999999999999888888877543 433 9999999999999 99999987543
No 125
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=3.9e-18 Score=141.08 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=107.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--------hhcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--------~~~~~~~ 84 (263)
....++.++++|++++|+|+||||||||+++|+|.. +|+.|.|.++|..+.... ..|.++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-----------PPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence 467789999999999999999999999999999994 899999999987653211 1244443
Q ss_pred ----CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHH
Q 024748 85 ----AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 85 ----~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~ 160 (263)
.++..+++.|+..+....+. +++ +.+..+ ++. ..+| +++++|||+...|+.
T Consensus 84 ~~~~~~~~~~t~~e~l~~~~~LS~----G~~--qrl~la-------~al----------~~~p--~llllDEP~~~LD~~ 138 (182)
T cd03215 84 RKREGLVLDLSVAENIALSSLLSG----GNQ--QKVVLA-------RWL----------ARDP--RVLILDEPTRGVDVG 138 (182)
T ss_pred cccCcccCCCcHHHHHHHHhhcCH----HHH--HHHHHH-------HHH----------ccCC--CEEEECCCCcCCCHH
Confidence 24445777777655432111 111 111111 110 2357 788999999999999
Q ss_pred HHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCc
Q 024748 161 FMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 200 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~ 200 (263)
..+...+.+.+....+.+ |+...+.++|+++ .+|++|++
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v-~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSELDELLGLCDRI-LVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEecCCcC
Confidence 999888888876543433 9999999999999 88887753
No 126
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.7e-18 Score=145.13 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=115.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----h--hhcCCCC-
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS- 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~--~~~~~~~- 84 (263)
+....++.++.+| +++|+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..|.++.
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 81 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-----------PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF 81 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-----------CCCccEEEECCCccccchHHHHhheEEecCCC
Confidence 5678899999999 99999999999999999999994 89999999998765321 1 1244444
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|+..+...... .......+.+.++..+.- .+.+..+..+++ ..+| +++++
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS~G~~qrv~la~al~~~p--~llll 154 (211)
T cd03264 82 GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----DRAKKKIGSLSGGMRRRVGIAQALVGDP--SILIV 154 (211)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----HHHhCchhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 34456788888765321111 011111222222322210 000111111222 4677 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|||+...|+...+...+.+.+... +.+ |+.+.+.++||++ .+|++|+++..
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i-~~l~~g~i~~~ 210 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQV-AVLNKGKLVFE 210 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEE-EEEECCEEEec
Confidence 999999999999888888887653 233 9999999999999 88999987643
No 127
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.71 E-value=3.1e-18 Score=146.00 Aligned_cols=176 Identities=13% Similarity=0.053 Sum_probs=119.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH---hhhcCCCC-CC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKS-AV 86 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l---~~~~~~~~-~~ 86 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|..+... ...|.++. .+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~ 81 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-----------RPTSGEIIFDGHPWTRKDLHKIGSLIESPPL 81 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEeccccccccEEEEcCCCCc
Confidence 45678899999999999999999999999999999994 89999999998754321 11244444 33
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHh
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~ 154 (263)
+..+++.|+..+........ ...+.+.++..+.- ...+ .....+++ ..+| +++++|||+
T Consensus 82 ~~~~t~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~~rv~laral~~~p--~llllDEP~ 152 (223)
T TIGR03740 82 YENLTARENLKVHTTLLGLP--DSRIDEVLNIVDLT-NTGK----KKAKQFSLGMKQRLGIAIALLNHP--KLLILDEPT 152 (223)
T ss_pred cccCCHHHHHHHHHHHcCCC--HHHHHHHHHHcCCc-HHHh----hhHhhCCHHHHHHHHHHHHHhcCC--CEEEECCCc
Confidence 44577888775432211100 11222222222110 0011 11111221 4567 899999999
Q ss_pred hhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 155 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
...|+...+...+.+.+....+.+ |+...+.++|+++ .+|.+|++...++..
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHI-GIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE-EEEeCCEEEEecChh
Confidence 999999999988888877543433 9999999999999 999999988777653
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.70 E-value=5.7e-18 Score=143.44 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=117.0
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-CCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AVP 87 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~~~ 87 (263)
...+++++.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|+.+... ...|.++. .++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~ 82 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-----------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLF 82 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEcccCChhccceEEEeccCccC
Confidence 4578999999999999999999999999999999 489999999998765321 11244544 344
Q ss_pred cceehhhhhccccCc-cc-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 88 AFLEIHDIAGLVRGA-HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~-~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
..+++.|++.+.... .. .........+.++..+.- ...+. ....+++ ..+| ++.++|||
T Consensus 83 ~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~----~~~~LS~G~~qrl~laral~~~p--~llllDEP 155 (213)
T TIGR01277 83 AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDR----LPEQLSGGQRQRVALARCLVRPN--PILLLDEP 155 (213)
T ss_pred CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhC----CcccCCHHHHHHHHHHHHHhcCC--CEEEEcCC
Confidence 567888887653211 11 000111222223332210 00110 0111221 4567 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+...|....+...+.+.+.... +.+ |+...+.++||++ .+|.+|++...++
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v-~~l~~g~i~~~~~ 212 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQI-AVVSQGKIKVVSD 212 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE-EEEECCeEEEecC
Confidence 9999999999988888877543 333 9999999999999 8889998876653
No 129
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.70 E-value=4.6e-18 Score=148.73 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=121.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hh
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~ 79 (263)
+......++.++++|+++||+|+||||||||+++|+|+. +|++|.|.++|..+... . ..
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 91 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-----------KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEEccccCHHHHHHHhhceE
Confidence 356788999999999999999999999999999999994 89999999998765321 1 12
Q ss_pred cCCCC---CCCcceehhhhhccccCcc-c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 80 FKPKS---AVPAFLEIHDIAGLVRGAH-E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 80 ~~~~~---~~~~~l~~~d~~g~~~~~~-~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
|.++. .++..+++.|++.+..... . .......+.+.++..+.--...+ .....+++ ..
T Consensus 92 ~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~LSgGe~qrv~laral~~ 167 (265)
T TIGR02769 92 LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD----KLPRQLSGGQLQRINIARALAV 167 (265)
T ss_pred EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh----CChhhCCHHHHHHHHHHHHHhc
Confidence 44444 2444678888765432110 0 00111222233333321001111 11111222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.+.... +.+ |+...+..+||++ .+|++|+++..++.
T Consensus 168 ~p--~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 168 KP--KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV-AVMDKGQIVEECDV 235 (265)
T ss_pred CC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEE-EEEeCCEEEEECCH
Confidence 78 899999999999999988888888877543 433 9999999999999 99999998877654
No 130
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.9e-18 Score=151.19 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=121.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|..+... . ..|.++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 88 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQ 88 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEe
Confidence 4588899999999999999999999999999999999 489999999999765321 1 124444
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .+...++.|+..+...... .......+.+.+..++. ..+.+.....+++ ..+| ++
T Consensus 89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~l 161 (279)
T PRK13635 89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM-----EDFLNREPHRLSGGQKQRVAIAGVLALQP--DI 161 (279)
T ss_pred CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC-----hhhhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 42 3446788888865432211 11111222223333221 1111111112332 5678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+.+.|+.......+.+.+.... +.+ |+++.+. .|+++ .+|.+|+++..++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 224 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRV-IVMNKGEILEEGTP 224 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEE-EEEECCEEEEECCH
Confidence 9999999999999999988888877643 433 9999886 49999 99999998877653
No 131
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.70 E-value=3.5e-18 Score=146.91 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=118.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH------hhhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l------~~~~~~~~ 84 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|..+... ...|.++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~ 82 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-----------VAQEGQISVAGHDLRRAPRAALARLGVVFQQ 82 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCceEEEECCEEcccCChhhhhhEEEeCCC
Confidence 45678899999999999999999999999999999994 89999999998765321 11255554
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.++..+....+.. ......+.+.++..+. ....+..+..+++ ..+| ++++
T Consensus 83 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LS~G~~qrl~laral~~~p--~lll 155 (236)
T TIGR03864 83 PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----AERADDKVRELNGGHRRRVEIARALLHRP--ALLL 155 (236)
T ss_pred CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----hhhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 344567888887654322110 0111122222222211 0000111112222 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+...|+...+...+.+.+... .+.+ |+.+.+.. |+++ .+|++|+++..++.
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i-~~l~~G~i~~~~~~ 216 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRL-VVLHRGRVLADGAA 216 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEE-EEEeCCeEEEeCCH
Confidence 9999999999999998888887653 2333 99999875 9999 89999998776543
No 132
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.7e-17 Score=135.73 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=124.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----HhhhcCCCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQLFKPKSAV 86 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~~~~~~~~~~ 86 (263)
.++..+++..|.+|+.+.++||+|||||||+|+++|+ ..|..|+|.++|+++.- -+-+||....+
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-----------~~P~~G~i~l~~r~i~gPgaergvVFQ~~~Ll 86 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-----------VTPSRGSIQLNGRRIEGPGAERGVVFQNEALL 86 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-----------cCcccceEEECCEeccCCCccceeEeccCccc
Confidence 3488899999999999999999999999999999999 48999999999988754 23346666555
Q ss_pred CcceehhhhhccccCcccccch--HHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGL--GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~--~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
| +++++|++.|+.....-... .....+.+..+. +..+++..+.++++ +.+| +++++||
T Consensus 87 P-Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~Vg-----L~~~~~~~i~qLSGGmrQRvGiARALa~eP--~~LlLDE 158 (259)
T COG4525 87 P-WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG-----LEGAEHKYIWQLSGGMRQRVGIARALAVEP--QLLLLDE 158 (259)
T ss_pred h-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-----cccccccceEeecchHHHHHHHHHHhhcCc--ceEeecC
Confidence 5 89999999998655431111 111222222221 11233334555665 6788 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhc--CCcccc
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQD--GKDVRL 203 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~--G~~~~~ 203 (263)
|+...|.-.++...+.+-+.... ++ ||+.++..-+.+++ .+|.- |+++..
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrL-vvlsp~pgRvv~~ 216 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRL-VVLSPGPGRVVER 216 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhhee-EEecCCCceeeEe
Confidence 99999998888877666555432 22 49999999999998 77754 345543
No 133
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5e-18 Score=154.30 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=118.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH---------h--hhcCCCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKS 84 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l---------~--~~~~~~~ 84 (263)
.+++++++|++++|+|+||||||||+++|+|+. +|++|.|.++|+.+... . ..|.+|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-----------RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 689999999999999999999999999999994 89999999998765310 0 1144444
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++..+++.|++.+..... ....+.+.++..+. ..+.+.....+++ ..+| +++++|
T Consensus 85 ~~l~~~~tv~enl~~~~~~~----~~~~~~~~l~~~gl-----~~~~~~~~~~LSgGq~qRvalaraL~~~p--~llLLD 153 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMAKS----MVAQFDKIVALLGI-----EPLLDRYPGSLSGGEKQRVAIGRALLTAP--ELLLMD 153 (352)
T ss_pred cccCCCCcHHHHHHhhhhhh----hHHHHHHHHHHcCC-----chhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEc
Confidence 4455788888887643211 11222222222221 0011111112232 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|+...+..++.+.+.... +. +|+.+.+..+||++ .+|++|+++..++.
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 213 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRV-VVLEQGKVKAFGPL 213 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEE-EEEeCCEEEEecCH
Confidence 999999999998888888877543 33 39999999999999 99999998877653
No 134
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.70 E-value=3.1e-18 Score=149.16 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=120.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------------- 75 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------------- 75 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|..+..
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-----------KPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEEcccccccccccccccchH
Confidence 34677899999999999999999999999999999994 8899999999876531
Q ss_pred ---H--hhhcCCCC-CCCcceehhhhhccccC-ccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-------
Q 024748 76 ---L--CQLFKPKS-AVPAFLEIHDIAGLVRG-AHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------- 139 (263)
Q Consensus 76 ---l--~~~~~~~~-~~~~~l~~~d~~g~~~~-~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------- 139 (263)
. ...|.++. .++..+++.|+..+... ... .......+.+.++..+.- ....+.....+++
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGID----ERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCC----hhhhhCCcccCCHHHHHHHH
Confidence 1 11244554 33445788888764221 111 011111222223332210 0000111112222
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+....+.+ |+...+..+||++ .+|++|+++..++.
T Consensus 163 laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 236 (257)
T PRK10619 163 IARALAMEP--EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV-IFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 4578 899999999999999999988888877544443 9999999999999 99999999877653
No 135
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6.4e-18 Score=145.01 Aligned_cols=175 Identities=11% Similarity=0.150 Sum_probs=119.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-C
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-A 85 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~ 85 (263)
+....+++++.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|+.+... ...|.++. .
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-----------~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-----------TPTSGEILLDGKDITNLPPHKRPVNTVFQNYA 82 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEcCcCChhhcceEEEecccc
Confidence 5678889999999999999999999999999999994 89999999998765321 11244554 3
Q ss_pred CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
++..+++.|+..+....+. .......+...++..+. +.+-+.....+++ ..+| ++.++|
T Consensus 83 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~lS~G~~qrl~laral~~~p--~llllD 155 (232)
T cd03300 83 LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL-----EGYANRKPSQLSGGQQQRVAIARALVNEP--KVLLLD 155 (232)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEc
Confidence 3446788887765322111 00111122222222221 1111111111221 4567 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|++|++...++
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i-~~l~~G~~~~~~~ 214 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI-AVMNKGKIQQIGT 214 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 999999999999988888877643 433 9999999999999 9999999877654
No 136
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.2e-18 Score=153.54 Aligned_cols=178 Identities=12% Similarity=0.032 Sum_probs=120.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------------- 75 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------------- 75 (263)
.++...++.+|++|+++||+|+||||||||+++|+|+. +|++|.|.++|.++..
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-----------~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~ 107 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-----------KSKYGTIQVGDIYIGDKKNNHELITNPYSKK 107 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCeEEECCEEcccccccccccccccccc
Confidence 35889999999999999999999999999999999994 8999999999865421
Q ss_pred ------Hhh--hcCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----
Q 024748 76 ------LCQ--LFKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---- 139 (263)
Q Consensus 76 ------l~~--~~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---- 139 (263)
+.. .|.+|.. .....++.+++.+...... .......+.+.+...+.- ..+.+.....+++
T Consensus 108 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----~~~~~~~~~~LSgGqkq 183 (320)
T PRK13631 108 IKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----DSYLERSPFGLSGGQKR 183 (320)
T ss_pred cchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----hhHhcCCcccCCHHHHH
Confidence 111 1333331 1223478887766432111 111111222222222210 0111111222332
Q ss_pred --------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 --------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 --------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+.+| +++++|||+...|+.......+.+.+....+.| |+++.+.++||++ .+|.+|+++..|+.
T Consensus 184 RvaiAraL~~~p--~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri-~vl~~G~i~~~g~~ 260 (320)
T PRK13631 184 RVAIAGILAIQP--EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV-IVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 4678 899999999999999999988888776544433 9999999999999 99999999887754
No 137
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.70 E-value=5.5e-18 Score=161.16 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=124.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh---hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC---QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~---~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+ ..|+.|.|.++|..+.. .. ..|.+
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4577889999999999999999999999999999999 48999999999875421 11 12455
Q ss_pred CC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
+. .++..+++.|+..+..... .....++.+.+.....- .+.+..+..+++ ..+| ++++
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgG~~qrv~la~aL~~~p--~lll 163 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLPKR--QASMQKMKQLLAALGCQ-----LDLDSSAGSLEVADRQIVEILRGLMRDS--RILI 163 (510)
T ss_pred ccCccCCCCcHHHHhhcccccc--hHHHHHHHHHHHHcCCC-----ccccCChhhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 54 3455788999887653211 11112222233333210 011111122232 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|+++..|+..
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i-~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRI-SVMRDGTIALSGKTA 225 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecChH
Confidence 99999999999999988888877544433 9999999999999 999999988776543
No 138
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.70 E-value=8.4e-18 Score=144.63 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=117.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
.+....++.++++|+++||+|+||||||||+++|+|+. +|++|.|.++|..+... ...|.++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-----------DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-----------CCCCCEEEECCEehhhcCHHHHHhhEEEECC
Confidence 45788899999999999999999999999999999994 89999999999765321 1124555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhc--ceeE-EeeccC---CCceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--GIFH-VLRAFE---DPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d--~~l~-vv~~~~---~~~~~~l~~------------~~~P~~ 145 (263)
.......++.|++.+....... ......++... ..+. +-..++ +.....+++ ..+|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p-- 158 (238)
T cd03249 85 EPVLFDGTIAENIRYGKPDATD----EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP-- 158 (238)
T ss_pred chhhhhhhHHHHhhccCCCCCH----HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC--
Confidence 5222245888887664322111 11111111110 0000 000000 011112222 4577
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+.+.+. +||++ .+|.+|+++..++
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v-~~l~~G~i~~~~~ 220 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLI-AVLQNGQVVEQGT 220 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEE-EEEECCEEEEeCC
Confidence 8999999999999999999888887765 4433 9999886 89999 9999999887765
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.9e-18 Score=145.64 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=118.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++... ...|.++
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 84 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-----------DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ 84 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence 45678899999999999999999999999999999994 89999999999765321 1124455
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.......++.++..+...... . ...++.+.++..+.- ..+.+.....+++ ..+| +++++|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~l~~~~l~----~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllD 156 (241)
T PRK14250 85 QPHLFEGTVKDNIEYGPMLKG-E-KNVDVEYYLSIVGLN----KEYATRDVKNLSGGEAQRVSIARTLANNP--EVLLLD 156 (241)
T ss_pred CchhchhhHHHHHhcchhhcC-c-HHHHHHHHHHHcCCC----HHHhhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 522223577777665322111 1 011222222222210 0000111111222 4577 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
||+...|....+...+.+.+.... +.+ |+...+.++||++ .+|++|+++..++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (241)
T PRK14250 157 EPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYT-AFLNKGILVEYAK 215 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 999999999988888888876543 433 9999999999999 9999999877654
No 140
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.70 E-value=5.2e-18 Score=138.03 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=130.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH------------hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------CQ 78 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l------------~~ 78 (263)
.+|++.++.+|++|+.+-|+||+|||||||+|+|.+.. +|+.|.|.++|.++..+ +.
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-----------~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-----------RPTRGKILVNGHDLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-----------cCCCceEEECCeecccccccccchhhheeee
Confidence 67999999999999999999999999999999999995 89999999999877543 33
Q ss_pred hcCCCCCCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 79 LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 79 ~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
+||..+.++ ..+++|++.+...... .....+.+.+.++.+.+. +-.++| | ..+++ ...|
T Consensus 84 VFQD~rLL~-~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~l--P--~~LSGGEQQRvaIARAiV~~P- 156 (223)
T COG2884 84 VFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARAL--P--SQLSGGEQQRVAIARAIVNQP- 156 (223)
T ss_pred Eeeeccccc-cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcC--c--cccCchHHHHHHHHHHHccCC-
Confidence 466555444 7899999988654332 223334444444444321 111111 1 12232 4668
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
++++.|||+.-.|++...+.+..+.++...|.| |+..-+...-.|+ ..|++|+++++.
T Consensus 157 -~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv-l~l~~Grl~~d~ 219 (223)
T COG2884 157 -AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV-LALEDGRLVRDE 219 (223)
T ss_pred -CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE-EEEeCCEEEecc
Confidence 899999999999999999988888888766654 9999999998888 899999988763
No 141
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4.4e-18 Score=146.02 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=117.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----------hhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----------~~~ 79 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++... ...
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 90 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-----------TPTSGDVIFNGQPMSKLSSAAKAELRNQKLG 90 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEcCcCCHHHHHHHHhccEE
Confidence 46788999999999999999999999999999999994 89999999998765321 112
Q ss_pred cCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++. .++..+++.+++.+...... .......+.+.++..+. ..+.+.....+++ ..+|
T Consensus 91 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LSgG~~qrl~la~al~~~p- 164 (233)
T PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----EHRANHRPSELSGGERQRVAIARALVNNP- 164 (233)
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chhhhCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 44554 34446788888765321111 11111222223333221 0010111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+...+...+.+.+... .+.+ |+.+.+..+ +++ .+|.+|+++..+.
T Consensus 165 -~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~-~~l~~G~i~~~~~ 228 (233)
T PRK11629 165 -RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQ-LEMRDGRLTAELS 228 (233)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEE-EEEECCEEEEEec
Confidence 89999999999999999998888887653 2433 999998875 577 7889998876654
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.70 E-value=4.9e-18 Score=147.41 Aligned_cols=177 Identities=12% Similarity=0.132 Sum_probs=119.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------------- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------------- 76 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|+.+..+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-----------PIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccccccccccccchhH
Confidence 35678899999999999999999999999999999994 89999999998765311
Q ss_pred ----h--hhcCCCC-CCCcceehhhhhccccCc-cc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-------
Q 024748 77 ----C--QLFKPKS-AVPAFLEIHDIAGLVRGA-HE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------- 139 (263)
Q Consensus 77 ----~--~~~~~~~-~~~~~l~~~d~~g~~~~~-~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------- 139 (263)
. ..|.++. .++...++.|++.+.... .. .......+.+.++..+.- ..++ .....+++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~----~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKAD----HMPAQLSGGQQQRVA 156 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhh----cChhhcCHHHHHHHH
Confidence 1 1244444 344467888887653211 00 011111222223222210 0011 11111221
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+.......+.+.+.... +.+ |+...+..+|+++ .+|++|+++..++.
T Consensus 157 laral~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 157 IARALAMRP--KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV-CFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 4567 899999999999999988888888776543 333 9999999999999 99999998876653
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.69 E-value=4.9e-18 Score=148.76 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....++..+++|++++|+|+||||||||+++|+|+. +|++|.|.++|..+.. .. ..|.++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 94 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-----------EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQ 94 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEECCCCchhhHhccEEEEec
Confidence 46888999999999999999999999999999999994 8999999999876531 11 124444
Q ss_pred CC---CCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 84 SA---VPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~---~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.. ++..+++.++..+...... .......+.+.++.++.--... +..+..+++ ..+|
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LS~G~~qrv~laral~~~p-- 168 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----SYYPHMLAPGQKQRLGLARALILRP-- 168 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----hcCchhcCHHHHHHHHHHHHHHhCC--
Confidence 32 2334555555543211110 0011112222233332100000 111111222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+|+++ .+|.+|+++..++.
T Consensus 169 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 234 (267)
T PRK15112 169 KVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQV-LVMHQGEVVERGST 234 (267)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEecCCH
Confidence 899999999999999988888888876543 333 9999999999999 89999998876643
No 144
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=7.4e-18 Score=142.45 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=117.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------------HHh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------------WLC 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------------~l~ 77 (263)
..+++.++.+|++|++++|+||+|||||||||+|.|+. .|++|.+.++|.++. .++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-----------~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG 86 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-----------KPTSGEVLINGKDLTKLSEKELAKLRRKKIG 86 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCceEEECCEEcCcCCHHHHHHHHHHhEE
Confidence 57899999999999999999999999999999999995 899999999996553 234
Q ss_pred hhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC---Cceeeecc------------cCC
Q 024748 78 QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED---PDIIHVDD------------SVD 142 (263)
Q Consensus 78 ~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~---~~~~~l~~------------~~~ 142 (263)
.+||....++ .+++.|++.+......... . ...+.+..++..+...+. .....+++ ..+
T Consensus 87 fvFQ~~nLl~-~ltv~ENv~lpl~~~~~~~-~----~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 87 FVFQNFNLLP-DLTVLENVELPLLIAGKSA-G----RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred EECccCCCCC-CCCHHHHHHhHHHHcCCCh-h----HHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 4566555554 8999999986432221110 0 000111122222222211 11223343 577
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
| ++.+.|||+.-+|...-+..++.+.+.... +.+ |+..-. ..|||+ ..|.+|+
T Consensus 161 P--~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~-i~l~dG~ 219 (226)
T COG1136 161 P--KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRV-IELKDGK 219 (226)
T ss_pred C--CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEE-EEEeCCe
Confidence 8 899999999999999999988888887644 433 877665 599999 8888887
No 145
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.1e-17 Score=137.92 Aligned_cols=149 Identities=20% Similarity=0.207 Sum_probs=105.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh---------hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~---------~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|+|.++|..+.... ..|.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-----------EPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 45778889999999999999999999999999999994 889999999987653211 1134
Q ss_pred CCC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHH
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~ 160 (263)
++. .++...++.|+..+. .+ .+++- .+. +++++ ..+| ++.++|||+...|+.
T Consensus 82 ~q~~~~~~~~t~~~~l~~~--lS----~G~~q-----r~~----la~al----------~~~p--~llilDEP~~~LD~~ 134 (178)
T cd03229 82 FQDFALFPHLTVLENIALG--LS----GGQQQ-----RVA----LARAL----------AMDP--DVLLLDEPTSALDPI 134 (178)
T ss_pred ecCCccCCCCCHHHheeec--CC----HHHHH-----HHH----HHHHH----------HCCC--CEEEEeCCcccCCHH
Confidence 443 333356677766543 11 11111 110 01111 2356 789999999999999
Q ss_pred HHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 161 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
......+.+.+.... +.+ |+...+..+||++ .+|++|
T Consensus 135 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 135 TRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEeCC
Confidence 999888888877654 333 9999999999998 777766
No 146
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8e-18 Score=141.53 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=110.9
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CccceeeeCCcchHHHh------hhc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWLC------QLF 80 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~---p~~G~i~~~g~~~~~l~------~~~ 80 (263)
+.+....+++++.+|++++|+|+||||||||+++|+|+. + |+.|.|.++|.++.... ..|
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~ 87 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT-----------EGNVSVEGDIHYNGIPYKEFAEKYPGEIIY 87 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC-----------CCCCCcceEEEECCEECccchhhhcceEEE
Confidence 456788999999999999999999999999999999995 5 78999999987653211 114
Q ss_pred CCCC-CCCcceehhhhhccccCccc-----ccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHh
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 154 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~-----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~ 154 (263)
.++. .++..+++.|+..+...... ....+++ +.+ .+.++ -..+| +++++|||+
T Consensus 88 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~-----qrl----~lara----------l~~~p--~llllDEPt 146 (202)
T cd03233 88 VSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGER-----KRV----SIAEA----------LVSRA--SVLCWDNST 146 (202)
T ss_pred EecccccCCCCcHHHHHhhhhhhccccchhhCCHHHH-----HHH----HHHHH----------HhhCC--CEEEEcCCC
Confidence 4443 33445677777654321100 0000111 000 00011 03467 799999999
Q ss_pred hhccHHHHHHHHHHHHHHhhh-ccc------hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 155 RLKDIEFMERRIEDVEKSMKR-SND------KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~-~~~------h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
...|+...+..++.+.+.... +.+ |..+.+.++||++ .+|++|+++..
T Consensus 147 ~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G~i~~~ 201 (202)
T cd03233 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKV-LVLYEGRQIYY 201 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeE-EEEECCEEEec
Confidence 999999998888888877543 222 5568889999999 99999987643
No 147
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=7e-18 Score=146.22 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=121.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....+++++++|+++||+|+||||||||+++|+|+..+. | -.|+.|.|.++|.++... . ..|.++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~---~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 89 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELY---P---EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQ 89 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---C---CCCCceEEEECCEECCcCCHHHHhccEEEEec
Confidence 45778899999999999999999999999999999994100 0 014799999998765321 1 125555
Q ss_pred C-CCCcceehhhhhccccCccc---c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~---~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
. .++..+++.|+..+...... . ......+.+.++.++..- .+...-+.....+++ ..+| +
T Consensus 90 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~LSgG~~qrv~laral~~~p--~ 166 (250)
T PRK14247 90 IPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-EVKDRLDAPAGKLSGGQQQRLCIARALAFQP--E 166 (250)
T ss_pred cCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc-chhhhhcCCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 5 34557889998865432111 0 111122233333333200 000000111112222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+....+..+.+.+... +.+ |+...+.++||++ .+|++|++...++.
T Consensus 167 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 229 (250)
T PRK14247 167 VLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYV-AFLYKGQIVEWGPT 229 (250)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE-EEEECCeEEEECCH
Confidence 9999999999999999998888887643 333 9999999999999 99999998877653
No 148
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=5.8e-18 Score=147.35 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=117.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--hhcCCCC-CCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVP 87 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--~~~~~~~-~~~ 87 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++.... ..|.++. .++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~ 82 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-----------PYQHGSITLDGKPVEGPGAERGVVFQNEGLL 82 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCCcEEEEeCCCccC
Confidence 35678899999999999999999999999999999994 899999999987653211 1234444 334
Q ss_pred cceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 88 AFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
...++.+++.+...... .......+.+.++..+.- ... +.....+++ ..+| +++++|||
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~----~~~~~~LSgGq~qrl~laral~~~p--~lllLDEP 155 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAE----KRYIWQLSGGQRQRVGIARALAANP--QLLLLDEP 155 (255)
T ss_pred CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHh----hCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence 45788887765321111 000111222222222210 000 111112222 4567 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhh--cCCccccCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQ--DGKDVRLGD 205 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~--~G~~~~~g~ 205 (263)
+...|+.......+.+.+... .+.+ |+.+.+..+|+++ .+|+ .|+++..++
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i-~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATEL-VLLSPGPGRVVERLP 214 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCCcEEEEEec
Confidence 999999999998888887643 2333 9999999999999 8887 487766543
No 149
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.69 E-value=7.5e-18 Score=143.91 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=113.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++..+++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+..... ...+...+
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~----~~~~~~~~ 99 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-----------PPDSGTVTVRGRVSSLLGL----GGGFNPEL 99 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEchhhcc----cccCCCCC
Confidence 56788899999999999999999999999999999994 8999999999876532211 11223356
Q ss_pred ehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhh
Q 024748 91 EIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 156 (263)
Q Consensus 91 ~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~ 156 (263)
++.|+..+...... .........+.++..+. ....+..+..+++ ..+| ++.++|||+..
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~laral~~~p--~llllDEP~~g 172 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-----GDFIDLPVKTYSSGMKARLAFAIATALEP--DILLIDEVLAV 172 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----hhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCccc
Confidence 77777654322111 00111111111211110 0000111112222 4578 89999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 157 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
.|+.......+.+.+....+.+ |+...+..+|+++ .+|.+|+++..
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~ 223 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRA-LVLEKGKIRFD 223 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEec
Confidence 9999988888888776544333 9999999999999 88888887643
No 150
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.69 E-value=6.3e-18 Score=144.42 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=117.6
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CccceeeeCCcchHHH----hhhcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWL----CQLFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~---p~~G~i~~~g~~~~~l----~~~~~~ 82 (263)
+.+....+++++.+|++++|+|+||||||||+++|+|.. . |+.|.|.++|..+... ...|.+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 87 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-----------EGGGTTSGQILFNGQPRKPDQFQKCVAYVR 87 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc-----------CCCCCCceEEEECCEECChHHhcccEEEeC
Confidence 467888999999999999999999999999999999994 6 8999999998765321 112455
Q ss_pred CC-CCCcceehhhhhccccCccc----ccchH-HHHHH-HHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE----GQGLG-NSFLS-HIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~----~~~~~-~~~~~-~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
+. .++..+++.|+..+...... ..... ..... .++..+. ....+..+..+++ ..+|
T Consensus 88 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 88 QDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-----TRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred CCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-----hhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 54 44556788888765422110 00000 01111 1111111 0001111112222 4567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhH-HHHHHHHHHHHHHhhcCCcccc
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQL-KIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~-~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
+++++|||+...|+.......+.+.+....+.+ |+. ..+.++||++ .+|.+|+++..
T Consensus 163 --~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i-~~l~~G~i~~~ 225 (226)
T cd03234 163 --KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI-LLLSSGEIVYS 225 (226)
T ss_pred --CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE-EEEeCCEEEec
Confidence 899999999999999999888888876544433 887 6899999999 99999987654
No 151
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.69 E-value=1.4e-17 Score=139.16 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc--CCccceeeeCCcchHHH--h--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWL--C--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~--~p~~G~i~~~g~~~~~l--~--~~~~~~~ 84 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+ . +|..|.|.++|+.+... . ..|.++.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~ 90 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR-----------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQD 90 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCceEEEECCEeCchHhhhheEEEccCc
Confidence 5788999999999999999999999999999999999 5 78999999998875321 1 1244444
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~ 163 (263)
.++..+++.|+..+..... ...-+++ +.+. +.+++ ..+| +++++|||+...|....+
T Consensus 91 ~~~~~~~t~~~~i~~~~~~~-~LS~G~~-----qrv~----laral----------~~~p--~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 91 DILHPTLTVRETLMFAAKLR-GLSGGER-----KRVS----IALEL----------VSNP--SLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred ccCCCCCcHHHHHHHHHHhc-cCCHHHH-----HHHH----HHHHH----------HcCC--CEEEEeCCCcCCCHHHHH
Confidence 3344577777765432110 0011111 1110 11111 2457 788999999999999998
Q ss_pred HHHHHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhcCCcccc
Q 024748 164 RRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 164 k~~~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~G~~~~~ 203 (263)
...+.+.+....+.+ |+.. .+.++||++ .+|++|++.+.
T Consensus 149 ~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v-~~l~~G~i~~~ 193 (194)
T cd03213 149 QVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL-LLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEE-EEEeCCEEEec
Confidence 888888876544433 9886 688899999 99999987543
No 152
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=4.1e-18 Score=150.27 Aligned_cols=176 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH------hh--hcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l------~~--~~~~ 82 (263)
.+....++++|.+|++++|+|+||||||||+++|+|+. .|+.|.|.++|..+... .. .|.+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~ 91 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-----------IPSEGKVYVDGLDTSDEENLWDIRNKAGMVF 91 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEeccccccHHHHhhheEEEe
Confidence 56899999999999999999999999999999999994 89999999998765321 11 2444
Q ss_pred CCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 83 KSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 83 ~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
+.. .....++.++..+...... .......+.+.++.++. ..+.+..+..+++ ..+| +
T Consensus 92 q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LS~G~~qrv~laral~~~p--~ 164 (280)
T PRK13633 92 QNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM-----YEYRRHAPHLLSGGQKQRVAIAGILAMRP--E 164 (280)
T ss_pred cChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCC-----HhHhhCCcccCCHHHHHHHHHHHHHHcCC--C
Confidence 432 1223467777765432111 11111122222222221 0111111122222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+.... +.+ |+.+.+.. ||++ .+|.+|+++..++.
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v-~~l~~G~i~~~g~~ 228 (280)
T PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRI-IVMDSGKVVMEGTP 228 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEE-EEEECCEEEEecCH
Confidence 99999999999999999988888877543 433 99999876 9999 99999998877754
No 153
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.1e-17 Score=159.09 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=123.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h---hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~---~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..|.+
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 86 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-----------EPTKGTITINNINYNKLDHKLAAQLGIGIIY 86 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-----------CCCccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence 45778999999999999999999999999999999994 89999999998765321 1 12445
Q ss_pred CC-CCCcceehhhhhccccCccc---c------cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE---G------QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~---~------~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
+. .++..+++.|++.+...... + ......+.+.++..+. ....+..+..+++ +
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL-----KVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC-----CCCcccchhhCCHHHHHHHHHHHHHh
Confidence 44 34456788888765432110 0 0011122222222221 0011111122332 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+| +++++|||+...|+.......+.+.+....+.+ |+...+..+||++ .+|++|++++.++.+
T Consensus 162 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v-~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 162 LDA--KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRY-TVMKDGSSVCSGMVS 230 (510)
T ss_pred cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEeeecchh
Confidence 678 899999999999999999988888877644443 9999999999999 999999988776543
No 154
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.69 E-value=9.9e-18 Score=159.12 Aligned_cols=177 Identities=14% Similarity=0.071 Sum_probs=121.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|..+.. .. ..|.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 85 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-----------YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 4567889999999999999999999999999999999 48999999999875421 11 12444
Q ss_pred CC-CCCcceehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|. .++..+++.|++.+...... .......+.+.++..+. ....+..+..+++ ..+|
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL-----RFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC-----CCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 44 34557889998876432110 00011112222222221 0001111122332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+....+. +|+.+.+..+||++ .+|++|+++..++.
T Consensus 161 --~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i-~~l~~G~i~~~~~~ 225 (501)
T PRK10762 161 --KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDV-TVFRDGQFIAEREV 225 (501)
T ss_pred --CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEecCc
Confidence 89999999999999999888888877654443 39999999999999 99999998776554
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.69 E-value=7.6e-18 Score=145.78 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=119.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----cceeeeCCcchHH-------Hh--
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LC-- 77 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-----~G~i~~~g~~~~~-------l~-- 77 (263)
+....++.++++|+++||+|+||||||||+++|+|+. .|+ +|.|.++|+.+.. ..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-----------DLVPGVRIEGKVLFDGQDIYDKKIDVVELRRR 83 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCcCCCCceEEEECCEEccccccchHHHHhh
Confidence 5678899999999999999999999999999999994 676 9999999876531 11
Q ss_pred hhcCCCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 QLFKPKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 ~~~~~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.|+. .++. .++.|+..+...... .......+...++.++..- .++...+.....+++ ..
T Consensus 84 i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 84 VGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWD-EVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred eEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 1245554 3333 788888765432111 0111112222233332210 000000111112222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.+.... .+ |+...+..+||++ .+|++|+++..++.
T Consensus 162 ~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 162 EP--EVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRT-AFFYDGELVEYGPT 227 (247)
T ss_pred CC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 78 899999999999999988888888776532 32 9999999999999 99999998877653
No 156
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=8.9e-18 Score=143.90 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=114.7
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----ccceeeeCCcchHHH-----hhhcCCCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKS 84 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p----~~G~i~~~g~~~~~l-----~~~~~~~~ 84 (263)
...+++++++|++++|+|+||||||||+++|+|+. +| +.|.|.++|+++... ...|.++.
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-----------PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCccCccccEEEECCEechhhhhhhheeEEEecC
Confidence 35688999999999999999999999999999994 66 899999999765421 11244444
Q ss_pred C---CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 85 A---VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 85 ~---~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
. ++..+++.++..+...... .......+.+.++..+.-- .+...+..+..+++ ..+| ++
T Consensus 71 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p--~v 146 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD--PEEVLKKYPFQLSGGMLQRVMIALALLLEP--PF 146 (230)
T ss_pred chhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc--hHHHHhCChhhcCHHHHHHHHHHHHHhcCC--CE
Confidence 2 3334566655433211110 0001112222233222100 00000111112222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|........+.+.+.... +.+ |+.+.+..+||++ .+|.+|++...++.
T Consensus 147 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 147 LIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV-AVMDDGRIVERGTV 210 (230)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999988888888877543 333 9999999999999 99999998877653
No 157
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=9.5e-18 Score=146.71 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred CCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCC
Q 024748 7 KSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (263)
Q Consensus 7 ~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~ 86 (263)
+.+..+....+++.+.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.. ...++. ..+
T Consensus 33 ~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-----------~p~~G~I~~~g~~----~~~~~~-~~~ 96 (264)
T PRK13546 33 KNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-----------SPTVGKVDRNGEV----SVIAIS-AGL 96 (264)
T ss_pred cCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCceEEEECCEE----eEEecc-cCC
Confidence 345567788999999999999999999999999999999994 8999999998852 111111 123
Q ss_pred CcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
...+++.++..+...... .......+...++..+. -..++ ..+..+++ ..+| +++++||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~----~~~~~LS~Gq~qrv~Laral~~~p--~iLlLDE 169 (264)
T PRK13546 97 SGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL-GEFIY----QPVKKYSSGMRAKLGFSINITVNP--DILVIDE 169 (264)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-chhhc----CCcccCCHHHHHHHHHHHHHhhCC--CEEEEeC
Confidence 335677777644221111 11111111111111111 00011 11111221 4577 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|+...|+...+...+.+.+....+.+ |+...+..+|+++ .+|.+|++...++.
T Consensus 170 Pt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i-~~l~~G~i~~~g~~ 227 (264)
T PRK13546 170 ALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKI-AWIEGGKLKDYGEL 227 (264)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEE-EEEECCEEEEeCCH
Confidence 99999999888888888776544433 9999999999999 89999998877654
No 158
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.69 E-value=5.6e-18 Score=178.90 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
..+...++..|++|+++||+|+||||||||||+|+|. ..|+.|.|.++|..+.. .. -.|.||.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-----------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~ 2020 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-----------TTVTSGDATVAGKSILTNISDVHQNMGYCPQF 2020 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECcchHHHHhhhEEEEecc
Confidence 5688999999999999999999999999999999999 48999999999977631 11 1255665
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|++.+....+.. ......+.+.++..+. ..+.+..+..+++ ..+| ++++
T Consensus 2021 ~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL-----~~~~dk~~~~LSGGqKqRLslA~ALi~~P--~VLL 2093 (2272)
T TIGR01257 2021 DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGL-----SLYADRLAGTYSGGNKRKLSTAIALIGCP--PLVL 2093 (2272)
T ss_pred ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----HHHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 455678999988764332211 1111111222222221 0111111222332 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|||+.+.|+...+..++.+.+....+.+ |++++++.+|||+ .+|.+|++++.|+..
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV-~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL-AIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 99999999999999999988887654443 9999999999999 999999988877643
No 159
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.69 E-value=1.1e-17 Score=144.97 Aligned_cols=176 Identities=15% Similarity=0.192 Sum_probs=118.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCCC-
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKS- 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~~- 84 (263)
+...++.++.+|+++||+|+||||||||+++|+|+. |..|.|.++|+.+.. .. ..|.++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~------------~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL------------PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCeEEEECCEecCcCCHHHHhhheEEecccC
Confidence 678899999999999999999999999999999983 448999999876532 11 1255554
Q ss_pred CCCcceehhhhhccccCcccc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC-----CCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV-----DPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~-----~P~~~ 146 (263)
..+..+++.++..+....... ......+.+.++..+.- ...+ .....+++ .. +|..+
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ 153 (248)
T PRK03695 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLG----RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ 153 (248)
T ss_pred ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhc----CCcccCCHHHHHHHHHHHHHhccccccCCCCC
Confidence 344467888887765322111 11111222223222210 0011 11111221 22 23338
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+....+.+ |+...+.++||++ .+|++|+++..++.
T Consensus 154 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 217 (248)
T PRK03695 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRV-WLLKQGKLLASGRR 217 (248)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999999999988888888776544433 9999999999999 99999998877654
No 160
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.69 E-value=3e-18 Score=154.42 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=123.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
..+...++.+|.+|+++||+|+||||||||+++|+|+. .|++|.|.++|+++..+ . ..|
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-----------~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~ 102 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-----------KATDGEVAWLGKDLLGMKDDEWRAVRSDIQM 102 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-----------CCCCcEEEECCEECCcCCHHHHHHHhCceEE
Confidence 45788999999999999999999999999999999994 78999999999865321 1 113
Q ss_pred CCCC---CCCcceehhhhhccccCcc----cccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 81 KPKS---AVPAFLEIHDIAGLVRGAH----EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 81 ~~~~---~~~~~l~~~d~~g~~~~~~----~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
.+|. .+...+++.|++.+....+ ........+.+.++.++..-.+.+. ....+++ +.
T Consensus 103 v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~----~p~~LSgG~~QRv~iArAL~~ 178 (331)
T PRK15079 103 IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR----YPHEFSGGQCQRIGIARALIL 178 (331)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----CcccCCHHHHHHHHHHHHHhc
Confidence 4443 3444678888875432111 1111122223333333220011111 1122332 57
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+..+|+......++.+.++... +.+ |++..+..+||++ .+|..|+++..|+.
T Consensus 179 ~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri-~vl~~G~ive~g~~ 246 (331)
T PRK15079 179 EP--KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV-LVMYLGHAVELGTY 246 (331)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 78 899999999999999998888888877543 333 9999999999999 99999999877653
No 161
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.68 E-value=9.2e-18 Score=142.77 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=113.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----------h-hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------C-QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----------~-~~ 79 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++... . ..
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 86 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-----------NPTSGEVLFNGQSLSKLSSNERAKLRNKKLG 86 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEEhhhcCHhHHHHHHHhcEE
Confidence 35788899999999999999999999999999999994 89999999998765321 1 12
Q ss_pred cCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++. .++..+++.|+..+...... .......+.+.++..+. ....+.....+++ ..+|
T Consensus 87 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p- 160 (221)
T TIGR02211 87 FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-----EHRINHRPSELSGGERQRVAIARALVNQP- 160 (221)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----hhhhhCChhhCCHHHHHHHHHHHHHhCCC-
Confidence 55555 34446788888766321111 00011112222222211 0000111112222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcc
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 201 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~ 201 (263)
+++++|||+...|+.......+.+.+.... +.+ |+...+.. ||++ .+|++|+++
T Consensus 161 -~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v-~~l~~G~i~ 220 (221)
T TIGR02211 161 -SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRV-LEMKDGQLF 220 (221)
T ss_pred -CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEE-EEEeCCEec
Confidence 899999999999999999888888876542 333 99988755 7988 888888653
No 162
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.68 E-value=8.1e-18 Score=144.84 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=120.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~- 84 (263)
.+....+++.+.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|..+... ...|.|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-----------QPDSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 35778899999999999999999999999999999994 88999999998765321 11255554
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.++..+....... ......+.+.+...+.- ...+ .....+++ ..+| ++.++
T Consensus 82 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~lS~G~~qrl~laral~~~p--~llll 154 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGD----RYPNQLSGGQRQRVALARALAVEP--QVLLL 154 (237)
T ss_pred hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhh----CChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 344467778877654322111 01112222233332210 1111 11111221 4567 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
|||+...|....+..++.+.+.... +.+ |+...+.++||++ ..|.+|+++..++
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 214 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI-VVMSNGKIEQIGS 214 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE-EEEECCEEEEecC
Confidence 9999999999999988888876543 333 9999999999999 9999999887665
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=3.7e-18 Score=151.18 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=117.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----------HHh--hh
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----------WLC--QL 79 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~----------~l~--~~ 79 (263)
+....+++++.+|+++||+|+||||||||+++|+|+. .|++|.|.++|..+. .+. ..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~ 93 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-----------ISETGQTIVGDYAIPANLKKIKEVKRLRKEIG 93 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEEccccccccccHHHHhccEE
Confidence 4788899999999999999999999999999999994 899999999886542 111 12
Q ss_pred cCCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.++.. .....++.++..+...... .......+.+.++..+. -..+.+.....+++ ..+|
T Consensus 94 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L----~~~~~~~~~~~LS~Gq~qrv~laral~~~p 169 (289)
T PRK13645 94 LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL----PEDYVKRSPFELSGGQKRRVALAGIIAMDG 169 (289)
T ss_pred EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----ChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 444442 1123477777655322111 00011111122222211 00011111112222 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+..++.+.+.... +.+ |+.+.+.++||++ .+|++|+++..++.
T Consensus 170 --~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 235 (289)
T PRK13645 170 --NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV-IVMHEGKVISIGSP 235 (289)
T ss_pred --CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 899999999999999998888888776542 333 9999999999999 99999998877653
No 164
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.68 E-value=1.9e-17 Score=145.45 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=119.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc--------cceeeeCCcchHH-----Hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--------EARVNIPDERFEW-----LC 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~--------~G~i~~~g~~~~~-----l~ 77 (263)
.+....++.+|.+|++++|+|+||||||||+++|+|+. +|+ .|.|.++|..+.. ..
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-----------~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-----------TGGGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCcccccccCCceEEEECCEEcccCCHHHHH
Confidence 35678999999999999999999999999999999994 676 8999999876532 11
Q ss_pred --hhcCCCC-CCCcceehhhhhccccCccc---c---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc---------
Q 024748 78 --QLFKPKS-AVPAFLEIHDIAGLVRGAHE---G---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD--------- 139 (263)
Q Consensus 78 --~~~~~~~-~~~~~l~~~d~~g~~~~~~~---~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~--------- 139 (263)
..|.++. .....+++.|++.+...... . ......+.+.++..+. ..+.+..+..+++
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----TALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----HhhhcCCcccCCHHHHHHHHHH
Confidence 1255554 22345788888765422110 0 0011112222222221 0000111112222
Q ss_pred ---c---------CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcc
Q 024748 140 ---S---------VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 201 (263)
Q Consensus 140 ---~---------~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~ 201 (263)
+ .+| +++++|||+...|+...+...+.+.+.... +.+ |+.+.+.++||++ .+|.+|+++
T Consensus 158 ral~~~~~~~~~~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i-~~l~~G~i~ 234 (272)
T PRK13547 158 RVLAQLWPPHDAAQPP--RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI-AMLADGAIV 234 (272)
T ss_pred HHHhccccccccCCCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCeEE
Confidence 2 367 899999999999999999988888876543 333 9999999999999 899999988
Q ss_pred ccCCC
Q 024748 202 RLGDW 206 (263)
Q Consensus 202 ~~g~~ 206 (263)
..++.
T Consensus 235 ~~g~~ 239 (272)
T PRK13547 235 AHGAP 239 (272)
T ss_pred EecCH
Confidence 77653
No 165
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.68 E-value=9.1e-18 Score=144.74 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=118.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H-h--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-C--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l-~--~~~~~ 82 (263)
.+....+++++++|++++|+|+||||||||+++|+|+.. ..|++|.|.++|+++.. . . ..|.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---------YEVTSGTILFKGQDLLELEPDERARAGLFLAF 83 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCcceEEECCEecCCCCHHHhhccceEeee
Confidence 456788999999999999999999999999999999830 15889999999875421 1 1 12445
Q ss_pred CC-CCCcceehhhhhccccCccc---------ccchHHHHHHHHhhhcceeEEeeccCCCcee-eecc------------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE---------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDII-HVDD------------ 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~---------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~-~l~~------------ 139 (263)
+. ..+..+++.++..+...... .......+.+.++..+.- ....+..+. .+++
T Consensus 84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD----EEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCc----hhhcccccccCcCHHHHHHHHHHHHH
Confidence 54 33445677776644321100 000111122222222110 000001111 1222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHH-HHHHHHHhhcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l-~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+....+.+ |+.+.+..+ ||++ .+|++|++...++.
T Consensus 160 ~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i-~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 160 LLEP--KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYV-HVLLDGRIVKSGDV 229 (243)
T ss_pred hcCC--CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeE-EEEeCCEEEEecCH
Confidence 4567 899999999999999999988888877544433 999999998 8999 89999998877653
No 166
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.68 E-value=2.2e-17 Score=144.17 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---cceeeeCCcchHHH-----------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL----------- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~---~G~i~~~g~~~~~l----------- 76 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. .|+ .|.|.++|..+...
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 85 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-----------TGDKSAGSHIELLGRTVQREGRLARDIRKSR 85 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC-----------CCCCCCceEEEECCEecccccccchhHHHHH
Confidence 45778999999999999999999999999999999994 554 59999998765321
Q ss_pred -hhhcCCCC-CCCcceehhhhhccccCccc----------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----
Q 024748 77 -CQLFKPKS-AVPAFLEIHDIAGLVRGAHE----------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----- 139 (263)
Q Consensus 77 -~~~~~~~~-~~~~~l~~~d~~g~~~~~~~----------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----- 139 (263)
...|.++. .++..+++.+++.+...... .......+.+.++..+.- . +.+.....+++
T Consensus 86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~----~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-H----FAHQRVSTLSGGQQQR 160 (262)
T ss_pred hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-H----HHhCCccccCHHHHHH
Confidence 11255555 34456788888765421100 000111122222222210 0 11111112222
Q ss_pred -------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+.... +.+ |+...+..+|+++ .+|.+|++...++.
T Consensus 161 v~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i-~~l~~g~i~~~g~~ 237 (262)
T PRK09984 161 VAIARALMQQA--KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI-VALRQGHVFYDGSS 237 (262)
T ss_pred HHHHHHHhcCC--CEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 4578 899999999999999999988888877543 333 9999999999999 99999998877765
Q ss_pred C
Q 024748 207 K 207 (263)
Q Consensus 207 ~ 207 (263)
.
T Consensus 238 ~ 238 (262)
T PRK09984 238 Q 238 (262)
T ss_pred H
Confidence 4
No 167
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.68 E-value=2.9e-17 Score=140.19 Aligned_cols=167 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--hhcCCCCC-C--Ccceehhh
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-V--PAFLEIHD 94 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~--~~~l~~~d 94 (263)
++++|+++||+|+||||||||+++|+|.. +|++|.|.++|+.+.... ..|.++.. + ...+++.+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 70 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI-----------PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAH 70 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCccchHhhCcEEEecccccccCCCCccHHH
Confidence 57899999999999999999999999994 899999999997653221 12445442 2 12367777
Q ss_pred hhccccCcc-----cc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhh
Q 024748 95 IAGLVRGAH-----EG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 156 (263)
Q Consensus 95 ~~g~~~~~~-----~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~ 156 (263)
+..+..... .. ......+.+.++.++.- ...+ ..+..+++ ..+| ++.++|||+..
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrv~laral~~~p--~llilDEP~~~ 143 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELAD----RPVGELSGGQRQRVLVARALATRP--SVLLLDEPFTG 143 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCCc-hhhc----CChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCccc
Confidence 765432110 00 01111223333333221 1111 11111222 4667 89999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 157 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.|+...+...+.+.+....+.+ |+.+.+.++||++ .++ +|+++..++.
T Consensus 144 LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l-~G~i~~~~~~ 196 (223)
T TIGR03771 144 LDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV-VLL-NGRVIADGTP 196 (223)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEE-CCEEEeecCH
Confidence 9999999988888877544433 9999999999999 677 6998877654
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.5e-17 Score=158.14 Aligned_cols=178 Identities=10% Similarity=0.033 Sum_probs=122.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ccceeeeCCcchHH-----H-h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEW-----L-C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p--~~G~i~~~g~~~~~-----l-~--~~~ 80 (263)
.+....++.++.+|+++||+|+||||||||+|+|+|+. +| ++|.|.++|..+.. . . ..|
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-----------PHGTYEGEIIFEGEELQASNIRDTERAGIAI 86 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCCeEEEECCEECCCCCHHHHHHCCeEE
Confidence 45788999999999999999999999999999999994 54 79999999876521 1 1 124
Q ss_pred CCCC-CCCcceehhhhhccccCccc----c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE----G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~----~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
.+|. .++..+++.|++.+....+. . ......+.+.++..+. ....+..+..+++ ..+
T Consensus 87 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 87 IHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----DINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred EEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----CCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 4444 34557899998876542210 0 0111122222222221 0111111222332 467
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
| +++++|||+...|+.......+.+.+....+.+ |+...+..+||++ .+|++|+++..++..
T Consensus 162 p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 162 A--RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTI-CVIRDGRHIGTRPAA 228 (506)
T ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEE-EEEECCEEeeecccc
Confidence 8 899999999999999999988888877544433 9999999999999 899999988776543
No 169
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-17 Score=157.65 Aligned_cols=177 Identities=13% Similarity=0.135 Sum_probs=122.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|+.+.. .. ..|.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-----------QKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-----------CCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 35678899999999999999999999999999999994 8999999999876521 11 12444
Q ss_pred CC-CCCcceehhhhhccccCcccc-----cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~-----~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|. ..+..+++.|++.+......+ ......+.+.++..+. ....+..+..+++ ..+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~qrv~lA~al~~~p- 153 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----DIDPRAKVATLSVSQMQMIEIAKAFSYNA- 153 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----CCCccCchhhCCHHHHHHHHHHHHHHhCC-
Confidence 44 344568888887664321111 0011122222222221 0011111122332 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|.+|+++..++.
T Consensus 154 -~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 218 (491)
T PRK10982 154 -KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI-TILRDGQWIATQPL 218 (491)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEeecCh
Confidence 899999999999999999988888877544433 9999999999999 99999998877654
No 170
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.67 E-value=9.9e-18 Score=143.31 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=113.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----------hhhc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLF 80 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----------~~~~ 80 (263)
+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+... ...|
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 92 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-----------DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-----------CCCCeeEEECCEEcccCCHHHHHHHHhheEEE
Confidence 4678899999999999999999999999999999994 89999999998765321 1124
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++. .++..+++.|+..+...... ......++.+.++..+.- ...+ .....+++ ..+|
T Consensus 93 ~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~Ge~qrl~la~al~~~p-- 165 (228)
T PRK10584 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLD----HLPAQLSGGEQQRVALARAFNGRP-- 165 (228)
T ss_pred EEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhh----CChhhCCHHHHHHHHHHHHHhcCC--
Confidence 4444 34445788888765321111 011112222233333210 0011 01111221 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCcc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 201 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~ 201 (263)
+++++|||+...|+...+...+.+.+.... +.+ |+...++. ||++ .+|.+|+++
T Consensus 166 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i-~~l~~g~i~ 225 (228)
T PRK10584 166 DVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRR-LRLVNGQLQ 225 (228)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEE-EEEECCEEE
Confidence 899999999999999999988888877543 333 99988754 9998 888888764
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.7e-17 Score=142.36 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=115.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~~ 84 (263)
+....++.++++|+++||+|+||||||||+++|+|+. .|+.|.|.++|+.+... . ..|.++.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-----------DVDSGRILIDGHDVRDYTLASLRRQIGLVSQD 84 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cCCCCEEEECCEEhhhCCHHHHHhhEEEeCCC
Confidence 5678899999999999999999999999999999994 89999999999765321 1 1244554
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhh--hcceeEEe----eccCCCceeeecc------------cCCCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--VDGIFHVL----RAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~d~~l~vv----~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
......++.|+..+....... ..+....+. ++..+..+ ....+.....+++ +.+| +
T Consensus 85 ~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~ 158 (234)
T cd03251 85 VFLFNDTVAENIAYGRPGATR----EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP--P 158 (234)
T ss_pred CeeccccHHHHhhccCCCCCH----HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC--C
Confidence 222246888887665432111 111111111 00000000 0000111112222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++++|||+...|+...+...+.+.+.. .+.+ |+...+.. ||++ ..|.+|+++..++
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v-~~l~~G~i~~~~~ 219 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRI-VVLEDGKIVERGT 219 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEE-EEecCCeEeeeCC
Confidence 999999999999999998888887765 3433 99999876 9999 9999999876654
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=8.1e-17 Score=142.70 Aligned_cols=193 Identities=23% Similarity=0.274 Sum_probs=126.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|+|++|||||||+|.|+|...++ ++.|++|+....|.+..++ .++.++||||+......
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPKRA 69 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCchhH
Confidence 68999999999999999999998765 8899999887777655432 36899999999765432
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccCCCc-----ee-eecccCCCchhHHHHHHHhhhc-cHHHHHHHHHHHHHHhhh-
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDSVDPVRDLEVISAELRLK-DIEFMERRIEDVEKSMKR- 175 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~-~l~~~~~P~~~i~ilde~~~~~-d~~~~~k~~~~~~~~~~~- 175 (263)
...+.......+..+|.++.++++.+... +. .+.....| -+.+++. .++. +...+....+.+.+....
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p--vilVlNK-iDl~~~~~~l~~~~~~l~~~~~~~ 146 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP--VILVLNK-IDLVKDKEELLPLLEELSELMDFA 146 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC--EEEEEEC-CcCCCCHHHHHHHHHHHHhhCCCC
Confidence 22333445667788999999999865211 00 11111123 1222222 1112 222223333333332110
Q ss_pred ----ccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHH-----HHHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 176 ----SNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 176 ----~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~-----~e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
-++....++.++.+.+...++.|+.+|+ +..++.+ .|+||+. +....+++||++.|..+.|++
T Consensus 147 ~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~ 220 (292)
T PRK00089 147 EIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE 220 (292)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE
Confidence 1125566788899999899999998887 4455544 3789998 666799999999998888764
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=7.5e-18 Score=148.74 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=119.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc---ceeeeCCcchHH-----Hhh--hc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE---ARVNIPDERFEW-----LCQ--LF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~---G~i~~~g~~~~~-----l~~--~~ 80 (263)
.+....++..|.+|+++||+|+||||||||+++|+|+. .|+. |.|.++|+.+.. ... .|
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-----------~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~ 88 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-----------LPDDNPNSKITVDGITLTAKTVWDIREKVGI 88 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-----------CCCCCCCcEEEECCEECCcCCHHHHHhheEE
Confidence 35788999999999999999999999999999999994 6776 899999876531 111 24
Q ss_pred CCCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
.++.. .+...++.|++.+...... .......+.+.++.++.- .+.+.....+++ +.+|
T Consensus 89 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----~~~~~~~~~LS~G~~qrv~laral~~~P- 162 (282)
T PRK13640 89 VFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-----DYIDSEPANLSGGQKQRVAIAGILAVEP- 162 (282)
T ss_pred EEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-----hHhcCCcccCCHHHHHHHHHHHHHHcCC-
Confidence 44442 3446788888865432211 111112222333333210 011111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+.... +.+ |+...+ ..||++ .+|.+|+++..++.
T Consensus 163 -~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i-~~l~~G~i~~~g~~ 227 (282)
T PRK13640 163 -KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQV-LVLDDGKLLAQGSP 227 (282)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE-EEEECCEEEEeCCH
Confidence 899999999999999999888888876543 333 999988 479999 89999999887754
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=9.1e-18 Score=147.37 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=118.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. +. ..|.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q 90 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-----------KPQSGEIKIDGITISKENLKEIRKKIGIIFQ 90 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEecCcCCHHHHhcceEEEEe
Confidence 46788999999999999999999999999999999994 8999999999876532 11 124555
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .+..+++.|+..+...... .......+.+.++..+. ..+-+.....+++ ..+| ++
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrl~laral~~~p--~l 163 (271)
T PRK13632 91 NPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM-----EDYLDKEPQNLSGGQKQRVAIASVLALNP--EI 163 (271)
T ss_pred CHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----HHHhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 42 3445788888765422111 11111112222222221 0010111111221 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhc-cc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+...+...+.+.+....+ .+ |+...+. +|+++ .+|.+|++...++.
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v-~~l~~G~i~~~g~~ 226 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKV-IVFSEGKLIAQGKP 226 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEE-EEEECCEEEEecCH
Confidence 99999999999999999888888765432 32 9998885 79999 89999998876653
No 175
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.2e-17 Score=145.55 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=119.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+..+. .-.|+.|.|.++|+.+.. .. ..|.
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 98 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLI------KNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMV 98 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcc------cCCCcceEEEECCEEcccccchHHHHhhhEEEE
Confidence 45788999999999999999999999999999999995100 000379999998876521 11 1245
Q ss_pred CCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++. .++ ..++.++..+....+. .......+.+.++.++.. ..+...-+.....+++ ..+| +
T Consensus 99 ~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LSgG~~qrv~laral~~~p--~ 174 (258)
T PRK14268 99 FQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW-DETSDRLKSPALSLSGGQQQRLCIARTLAVKP--K 174 (258)
T ss_pred ecCCccC-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC-cchhhhhcCChhhCCHHHHHHHHHHHHHHcCC--C
Confidence 554 233 3788888765432111 001111222233333210 0000000111112222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+... +.+ |+...+.++||++ .+|++|+++..++.
T Consensus 175 llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 237 (258)
T PRK14268 175 IILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYT-GFFLMGELIEFGQT 237 (258)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999999888888887643 333 9999999999999 99999998877653
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.7e-17 Score=156.29 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CccceeeeCCcchHH------H--hhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEW------L--CQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~-p~~G~i~~~g~~~~~------l--~~~~~ 81 (263)
.+....++..+++|+++||+|+||||||||+|+|+|+. + |++|.|.++|+++.. . ...|.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-----------PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-----------CCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 35678899999999999999999999999999999994 6 589999998865421 1 11245
Q ss_pred CCC----CCCcceehhhhhccccC--ccc----cc-chHHHHHHHHhhhcceeEEeeccCCCceeeecc-----------
Q 024748 82 PKS----AVPAFLEIHDIAGLVRG--AHE----GQ-GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------- 139 (263)
Q Consensus 82 ~~~----~~~~~l~~~d~~g~~~~--~~~----~~-~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------- 139 (263)
+|. .++..+++.|+..+... ... .. .....+.+.++..+.- ....+..+..+++
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK----TASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc----CCCcccccccCCHHHHHHHHHHHH
Confidence 554 24556888888765321 100 00 0111222223332210 0000111122332
Q ss_pred -cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 -~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+.+| +++++|||+...|+...+...+.+.++...+.+ |+.+.+.++||++ .+|.+|+++..++..
T Consensus 420 l~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 420 LLLNP--KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV-LVMHEGKLKGDLINH 490 (506)
T ss_pred HhhCC--CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEeccc
Confidence 4578 899999999999999999988888877655543 9999999999999 899999988765543
No 177
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.3e-17 Score=135.02 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=121.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh---hcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ---LFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~---~~~~ 82 (263)
+....+++.++++|.+.+|||||||||||||.+++++ ++.++|.|.++|..+.. +++ +...
T Consensus 14 ~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 14 KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 4556788999999999999999999999999999999 58999999999987642 332 1222
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----------cCCCchhHHHHHH
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------SVDPVRDLEVISA 152 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------~~~P~~~i~ilde 152 (263)
...+...+++.|.++|++.++..-.+...-...+..+=.-+++-+.. +.-+-.++| ......|+.++||
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~-dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS-DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH-HHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 33445679999999999977642111111111111110001111100 000001111 0111227888899
Q ss_pred HhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
|+.-+|+...-...+.++++.. .++| |+...+....|.| ..|++|+++..|+.+
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~I-VAlK~G~vv~~G~~~ 221 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHI-VALKNGKVVKQGSPD 221 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhe-eeecCCEEEecCCHH
Confidence 9999998766665666665543 3444 9999999999999 889999999998754
No 178
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.2e-17 Score=145.03 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=119.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchH-------HHh-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFE-------WLC- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~-------~l~- 77 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +| +.|.|.++|+++. ...
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL-----------ELNEEARVEGEVRLFGRNIYSPDVDPIEVRR 85 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CcccCCCCceEEEECCEEccccccChHHHhh
Confidence 45788899999999999999999999999999999995 44 5999999987653 111
Q ss_pred -hhcCCCC-CCCcceehhhhhccccCccc----ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 78 -QLFKPKS-AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 78 -~~~~~~~-~~~~~l~~~d~~g~~~~~~~----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
..|.++. .++..+++.+++.+...... .......+.+.++..+..-. +....+.....+++
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-VKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-hhhhhccChhhCCHHHHHHHHHHHHH
Confidence 1244554 34446788888765432111 01111122222333221000 00000111111222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+... +.+ |+.+.+..+||++ .+|.+|++...++.
T Consensus 165 ~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 232 (253)
T PRK14267 165 AMKP--KILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYV-AFLYLGKLIEVGPT 232 (253)
T ss_pred hcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEE-EEEECCEEEEeCCH
Confidence 4577 89999999999999999888888887653 333 9999999999999 99999998877653
No 179
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.2e-17 Score=145.03 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=119.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchHH-------Hh-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~~-------l~- 77 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. +| +.|.|.++|+++.. ..
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN-----------DLVEGIKIEGNVIYEGKNIYSNNFDILELRR 88 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cCCcCCCCceEEEECCEecccccccHHHHhh
Confidence 45778899999999999999999999999999999995 44 58999999876421 11
Q ss_pred -hhcCCCCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 -QLFKPKSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 -~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.++......+++.|++.+....... ......+.+.++.++..-. +...-+.....+++ ..
T Consensus 89 ~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 89 KIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-VKDKLNTNALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred ceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 1255555222247888887654321110 0111122222333221000 00000111112222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.+.. .+.+ |+...+.++|+++ .+|.+|+++..++.
T Consensus 168 ~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 233 (254)
T PRK14273 168 EP--NVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRT-AFFLNGCIEEESST 233 (254)
T ss_pred CC--CEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 78 8999999999999999999888888774 3333 9999999999999 89999998877653
No 180
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.67 E-value=2e-16 Score=137.47 Aligned_cols=122 Identities=34% Similarity=0.571 Sum_probs=101.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.++++.+...++.=--+|+||-||||||||||+|+.....++.|+|||+.|.-|.+.+++ +.++
T Consensus 183 ~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~ 246 (366)
T KOG1489|consen 183 NGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQI 246 (366)
T ss_pred CCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc----------------ccee
Confidence 345555556666666899999999999999999999999999999999999999988876 2369
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhh
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELR 155 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~ 155 (263)
++.|.||++.+++...+++-+|+.+++.|+.+++|+|+..... .+|...+..+.+|+.
T Consensus 247 tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe 304 (366)
T KOG1489|consen 247 TVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELE 304 (366)
T ss_pred EeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864322 346555655555443
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.1e-17 Score=146.75 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=115.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~~ 84 (263)
+....+++++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+.. ... .|.++.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 91 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-----------KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN 91 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHHHHHhheeEEEeC
Confidence 4678899999999999999999999999999999994 8999999999976521 111 234443
Q ss_pred C--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 85 A--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 85 ~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
. .+...++.++..+...... .......+.+.++..+.. ...+ .....+++ ..+| +++
T Consensus 92 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrl~laral~~~p--~ll 164 (269)
T PRK13648 92 PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERAD----YEPNALSGGQKQRVAIAGVLALNP--SVI 164 (269)
T ss_pred hHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhh----CCcccCCHHHHHHHHHHHHHHcCC--CEE
Confidence 1 2334556666544322111 011111222222332210 1111 11112222 4677 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++|||+...|+.......+.+.+.... +.+ |+...+.. ||++ .+|.+|+++..++.
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i-~~l~~G~i~~~g~~ 226 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHV-IVMNKGTVYKEGTP 226 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEE-EEEECCEEEEecCH
Confidence 999999999999999888888776543 333 99988875 9999 99999999877654
No 182
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=9e-18 Score=147.88 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=119.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|.+|.|.++|+.+.. .. ..|.++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 88 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-----------EEFEGKVKIDGELLTAENVWNLRRKIGMVFQ 88 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCCCEEEECCEECCcCCHHHHhcceEEEEE
Confidence 35789999999999999999999999999999999994 8999999999876531 11 124444
Q ss_pred CC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 84 ~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.. .....++.|+..+...... .......+...++.++. ..+.+.....+++ +.+| ++
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~lAraL~~~p--~l 161 (277)
T PRK13642 89 NPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM-----LDFKTREPARLSGGQKQRVAVAGIIALRP--EI 161 (277)
T ss_pred CHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----HhHhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 32 3345688887765322111 11111122222233221 0111111122222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+.......+.+.+.... +.+ |+...+. .||++ .+|++|+++..++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 224 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRI-LVMKAGEIIKEAAP 224 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEeCCH
Confidence 9999999999999999988888877643 433 9999986 69999 99999998877654
No 183
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.4e-17 Score=144.64 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=118.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+.... ...|+.|.|.++|+++.. .. ..|.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 92 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI------PGARVEGEILLDGENIYDPHVDVVELRRRVGMV 92 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccC------CCCCCceEEEECCEEccccccCHHHHhhcEEEE
Confidence 45788999999999999999999999999999999984100 001579999999876531 11 1245
Q ss_pred CCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++. .++.|+..+...... . .....++.+.++.++..-.+.+.. +.....+++ ..+|
T Consensus 93 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p-- 168 (253)
T PRK14242 93 FQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEP-- 168 (253)
T ss_pred ecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 554 2332 478888765421111 0 011122222233332100000000 011111222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+...+.++||++ .+|++|++...++.
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 232 (253)
T PRK14242 169 EVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVT-AFFYMGKLIEVGPT 232 (253)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999888888887643 333 9999999999999 99999998876653
No 184
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.8e-17 Score=142.45 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=119.3
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-CC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AV 86 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~~ 86 (263)
....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++... ...|.++. .+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-----------~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~ 82 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-----------KPDSGKILLNGKDITNLPPEKRDISYVPQNYAL 82 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-----------CCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence 578899999999999999999999999999999994 89999999998765321 11244444 33
Q ss_pred CcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
+..+++.|+..+...... .......+.+.++....- ..++ ..+..+++ ..+| ++.++||
T Consensus 83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~qrl~laral~~~p--~llllDE 155 (235)
T cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLN----RKPETLSGGEQQRVAIARALVVNP--KILLLDE 155 (235)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHh----cCcccCCHHHHHHHHHHHHHHcCC--CEEEECC
Confidence 446788888765432211 011112222223322210 0011 11112222 4567 8999999
Q ss_pred HhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 153 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
|+...|+...+..++.+.+.... +.+ |+...+.++||++ .+|++|+++..++
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 213 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV-AIMLNGKLIQVGK 213 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999999988888876543 433 9999999999999 9999999887664
No 185
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.9e-17 Score=144.24 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=114.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh----hhcCCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSA- 85 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~----~~~~~~~~- 85 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|.++.... ..|.++..
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-----------RLASGKISILGQPTRQALQKNLVAYVPQSEE 88 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEhHHhhccceEEEeccccc
Confidence 45678899999999999999999999999999999994 899999999998764211 12444442
Q ss_pred C--CcceehhhhhccccCcc-----cc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 86 V--PAFLEIHDIAGLVRGAH-----EG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 86 ~--~~~l~~~d~~g~~~~~~-----~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
+ ....++.++..+..... .. ......+.+.++..+.- .+.+..+..+++ ..+|
T Consensus 89 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~LSgG~~qrv~laraL~~~p-- 161 (272)
T PRK15056 89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-----EFRHRQIGELSGGQKKRVFLARAIAQQG-- 161 (272)
T ss_pred cccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-----hHhcCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 1 11224455543221100 00 00011122222222210 011111222332 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+.++|+++ .++ +|+++..++.+
T Consensus 162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v-~~~-~G~i~~~g~~~ 226 (272)
T PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT-VMV-KGTVLASGPTE 226 (272)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEE-CCEEEeecCHH
Confidence 899999999999999999988888877544433 9999999999998 666 79887776543
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2e-17 Score=143.56 Aligned_cols=185 Identities=13% Similarity=0.043 Sum_probs=119.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+..+. ...|+.|.|.++|.++.. .. ..|.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~ 90 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI------SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMV 90 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc------cCCCCccEEEECCEecccccccHHHHHhheEEE
Confidence 45788899999999999999999999999999999984100 001378999999876531 11 1255
Q ss_pred CCCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.+++.+....... ......+.+.++.++..-.+-+ ..+.....+++ ..+| +
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p--~ 167 (251)
T PRK14270 91 FQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGGQQQRLCIARTIAVKP--D 167 (251)
T ss_pred ecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 555222237888887654322110 0111122223333321000000 00011111221 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+... +. +|+.+.+.++|+++ .+|++|+++..++.
T Consensus 168 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 230 (251)
T PRK14270 168 VILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYT-AFFLMGDLIEFNKT 230 (251)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEE-EEEECCeEEEeCCH
Confidence 9999999999999998888888877653 23 29999999999999 99999999877653
No 187
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.6e-17 Score=134.20 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=105.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----h--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~--~~~~~~~ 84 (263)
.+....+++++.+|++++|+|+||||||||+++|+|.. +|+.|.|.++|+.+... . ..|.++.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-----------KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 35788899999999999999999999999999999994 78999999998765321 1 1133443
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~ 163 (263)
.++..+++.|++.+ + -+++- .+. +.+++ +.+| +++++|||+...|+...+
T Consensus 82 ~~~~~~~tv~~~~~L----S----~G~~q-----rv~----laral----------~~~p--~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 82 PSLYENLTVRENLKL----S----GGMKQ-----RLA----LAQAL----------LHDP--ELLILDEPTSGLDPESRR 132 (173)
T ss_pred CccccCCcHHHHhhc----C----HHHHH-----HHH----HHHHH----------HcCC--CEEEEeCCccCCCHHHHH
Confidence 23334566666531 1 11110 110 01111 2357 799999999999999999
Q ss_pred HHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 164 RRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 164 k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
...+.+.+....+.+ |+...+..+|+++ ..|++|+
T Consensus 133 ~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i-~~l~~g~ 172 (173)
T cd03230 133 EFWELLRELKKEGKTILLSSHILEEAERLCDRV-AILNNGR 172 (173)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEE-EEEeCCC
Confidence 988888887654433 9999999999998 7777775
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.66 E-value=2.6e-17 Score=143.13 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=114.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----ccceeeeCCcchHHH-----hhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p----~~G~i~~~g~~~~~l-----~~~~~ 81 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +| +.|.|.++|+++... ...|.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v 84 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL-----------PAGVRQTAGRVLLDGKPVAPCALRGRKIATI 84 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCCcCCEEEECCeeccccccccceEEEE
Confidence 45678899999999999999999999999999999994 66 899999998765311 01133
Q ss_pred CCCC---CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSA---VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~---~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.. +....++.++................+.+.++.++.--. ...-+.....+++ ..+| +
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p--~ 160 (254)
T PRK10418 85 MQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--ARVLKLYPFEMSGGMLQRMMIALALLCEA--P 160 (254)
T ss_pred ecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--hhhhhcCCcccCHHHHHHHHHHHHHhcCC--C
Confidence 4431 222344444432211000000001222233333321000 0000111112222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|....+...+.+.+.... +.+ |+.+.+.++||++ .+|++|++...++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 225 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV-AVMSHGRIVEQGDV 225 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 99999999999999988888888776543 333 9999999999999 99999998776653
No 189
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2e-17 Score=144.89 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=117.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+.... ...|+.|.|.++|+.+.. .. ..|.
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 107 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLI------PSARSEGEILYEGLNILDSNINVVNLRREIGMV 107 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccccc------CCCCCceEEEECCEEcccccccHHHHhccEEEE
Confidence 45778899999999999999999999999999999973100 002689999999876531 11 1244
Q ss_pred CCCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.|+..+....... ......+.+.+..++.. ..+....+.....+++ ..+| +
T Consensus 108 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LSgGq~qrl~laral~~~p--~ 184 (268)
T PRK14248 108 FQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-DEVKDRLHSSALSLSGGQQQRLCIARTLAMKP--A 184 (268)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-cchHHHHhcCcccCCHHHHHHHHHHHHHhCCC--C
Confidence 554221124788877654211110 00111122222222210 0000000111112222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+... +. +|+...+.++|+++ .+|++|+++..++.
T Consensus 185 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 247 (268)
T PRK14248 185 VLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRT-AFFLNGDLVEYDQT 247 (268)
T ss_pred EEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999999988888887643 33 29999999999999 99999998877653
No 190
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-17 Score=154.54 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=119.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------H--hhhcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l--~~~~~~~~ 84 (263)
....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. . ...|.+|.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 336 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-----------RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPED 336 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-----------cCCCceEEECCEECCCCCHHHHHhCCCEEcCcC
Confidence 457788999999999999999999999999999994 8899999998865421 1 11244554
Q ss_pred ----CCCcceehhhhhccccCccc---c----cch-HHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 85 ----AVPAFLEIHDIAGLVRGAHE---G----QGL-GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 85 ----~~~~~l~~~d~~g~~~~~~~---~----~~~-~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
.++..+++.|+..+...... + ... ...+.+.+...+. -....+..+..+++ .
T Consensus 337 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 337 RKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNI----KTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred HhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCc----ccCCccCccccCCHHHHHHHHHHHHHc
Confidence 24556788888765321110 0 000 0111222222211 00011111223333 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.+| +++++|||+...|+...+...+.+.++...+.+ |+++.+.++|+++ .+|.+|+++..++.
T Consensus 413 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i-~~l~~g~i~~~~~~ 480 (501)
T PRK11288 413 EDM--KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRI-VVMREGRIAGELAR 480 (501)
T ss_pred cCC--CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEE-EEEECCEEEEEEcc
Confidence 578 899999999999999999988888877655443 9999999999999 89999998877654
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.66 E-value=3.8e-17 Score=140.46 Aligned_cols=174 Identities=15% Similarity=0.159 Sum_probs=117.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|++|.|.++|.++.... ..|.++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-----------VPENGRVLVDGHDLALADPAWLRRQVGVVLQ 83 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCEEEECCeehHhcCHHHHhhcEEEEcC
Confidence 45778899999999999999999999999999999994 899999999997654211 125555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----C---CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----E---DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~---~~~~~~l~~------------~~~P~ 144 (263)
.......++.|+..+....... ..+...++..+. ..++..+ + +.....+++ ..+|
T Consensus 84 ~~~~~~~tv~~nl~~~~~~~~~----~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p- 157 (237)
T cd03252 84 ENVLFNRSIRDNIALADPGMSM----ERVIEAAKLAGA-HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP- 157 (237)
T ss_pred CchhccchHHHHhhccCCCCCH----HHHHHHHHHcCc-HHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC-
Confidence 5322346888887664321110 111111111100 0001000 0 011112222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+.+.+. .|+++ .+|.+|+++..++
T Consensus 158 -~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v-~~l~~G~i~~~~~ 219 (237)
T cd03252 158 -RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRI-IVMEKGRIVEQGS 219 (237)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEEcC
Confidence 8999999999999999999888888765 3433 9999885 69999 9999999887765
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4e-17 Score=139.55 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=115.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....+++++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..|.++
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-----------DPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 35788899999999999999999999999999999994 89999999998766431 1 125555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeec----cC---CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA----FE---DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~----~~---~~~~~~l~~------------~~~P~ 144 (263)
.......++.|+..+....... ..+...++..... ..++. +. ......+++ ..+|
T Consensus 85 ~~~~~~~tv~~~~~~~~~~~~~----~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p- 158 (229)
T cd03254 85 DTFLFSGTIMENIRLGRPNATD----EEVIEAAKEAGAH-DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP- 158 (229)
T ss_pred CchhhhhHHHHHHhccCCCCCH----HHHHHHHHHhChH-HHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC-
Confidence 5222234778877665332211 1111111111100 00000 00 000111221 4677
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+...+. .|+++ .+|.+|++...++
T Consensus 159 -~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i-~~l~~g~~~~~~~ 220 (229)
T cd03254 159 -KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKI-LVLDDGKIIEEGT 220 (229)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEE-EEEeCCeEEEeCC
Confidence 8999999999999999998888887764 3333 9998885 59999 9999999877654
No 193
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.65 E-value=3.1e-17 Score=153.84 Aligned_cols=172 Identities=21% Similarity=0.274 Sum_probs=115.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|.... +. + ...+...+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~-i~--~--~~~l~~~l 100 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAAL-IA--I--SSGLNGQL 100 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeee-EE--e--ccccCCCC
Confidence 4578889999999999999999999999999999999 4899999999886410 10 0 11223456
Q ss_pred ehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhh
Q 024748 91 EIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 156 (263)
Q Consensus 91 ~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~ 156 (263)
++.|++.+...... .......+...++.++. ..+.+..+..+++ ..+| +++++|||+..
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL-----~~~ld~~~~~LSGGQrQRVaLArAL~~~P--~LLLLDEPTsg 173 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADI-----GKFIYQPVKTYSSGMKSRLGFAISVHINP--DILVIDEALSV 173 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCC-----hhHhhCCcccCCHHHHHHHHHHHHHHhCC--CEEEEECCccc
Confidence 77777655321111 11111111122222221 0011111112222 4567 89999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 157 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.|+.......+.+.+....+.+ |+...+..+||++ .+|.+|++...++.
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrI-ivL~~GkIv~~G~~ 227 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKA-LWLHYGQVKEYGDI 227 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999998888888876544433 9999999999999 89999998877654
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.8e-17 Score=154.17 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=118.9
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~~~ 84 (263)
....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. .. ..|.+|.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-----------KRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------cCCCCeEEECCEECCCCCHHHHHHCCcEEccCc
Confidence 577899999999999999999999999999999994 8999999999865421 11 1245553
Q ss_pred ----CCCcceehhhhhccccCcc----c---c---c-chHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 85 ----AVPAFLEIHDIAGLVRGAH----E---G---Q-GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 85 ----~~~~~l~~~d~~g~~~~~~----~---~---~-~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
.++..+++.++..+..... . + . .....+.+.+...+. -....+..+..+++
T Consensus 347 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL----KCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred cccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCC----CCCCccCccccCChHHHHHHHHHH
Confidence 3455788988876543210 0 0 0 000111222222211 00011111223333
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
..+| +++++|||+...|+...+...+.+.+....+.+ |+...+..+||++ .+|.+|+++..+
T Consensus 423 al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~ 491 (510)
T PRK09700 423 WLCCCP--EVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI-AVFCEGRLTQIL 491 (510)
T ss_pred HHhcCC--CEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEe
Confidence 4678 899999999999999999988888877544443 9999999999999 899999987653
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.6e-17 Score=142.22 Aligned_cols=175 Identities=9% Similarity=0.030 Sum_probs=112.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------HHh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------~l~--~~~~ 81 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+..+. ...|+.|.|.++|.++. ... ..|.
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~------~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v 99 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI------EGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMV 99 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc------CCCCCceEEEECCEEcccccCCHHHHhhceEEE
Confidence 45788999999999999999999999999999999994100 00168999999987642 111 1245
Q ss_pred CCC-CCCcceehhhhhccccCcccc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
++. .++. .++.|++.+....... ......+.+.++.++....+ ....+.....+++ ..+| ++
T Consensus 100 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-~~~~~~~~~~LS~G~~qrl~laral~~~p--~l 175 (269)
T PRK14259 100 FQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-KDKLNESGYSLSGGQQQRLCIARTIAIEP--EV 175 (269)
T ss_pred ccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-hhhhCCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 554 2333 4888887665422111 11111222223333221100 0000111111222 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhc
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQD 197 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~ 197 (263)
+++|||+...|+...+...+.+.+... +. +|+...+..+||++ .+|++
T Consensus 176 llLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i-~~l~~ 228 (269)
T PRK14259 176 ILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMT-AFFNA 228 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE-EEEec
Confidence 999999999999998888888877643 33 39999999999999 88886
No 196
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.1e-17 Score=141.93 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=119.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+... ..|+.|.|.++|+++.. .. ..|.++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 86 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQ 86 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHHHHhhhEEEEec
Confidence 4578889999999999999999999999999999998410 13689999999976532 11 124555
Q ss_pred C-CCCcceehhhhhccccCcccc----cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEG----QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~----~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
. .++ ..++.|+..+....+.. ......+.+.++.++..-.+.+.. +.....+++ ..+| +
T Consensus 87 ~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p--~ 162 (246)
T PRK14269 87 QPNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKP--K 162 (246)
T ss_pred CCccc-cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 5 233 36888887654321110 011112222233332200000000 001111221 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|.+|+++..++
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 224 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYT-AFFHLGELIEFGE 224 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEE-EEEECCEEEEECC
Confidence 9999999999999998888888877643 433 9999999999999 9999999987765
No 197
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.65 E-value=3.8e-17 Score=139.07 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=113.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----------hhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----------~~~~ 80 (263)
.+....+++++..|++++|+|+||||||||+++|+|.. +|+.|.|.++|..+... ...|
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 86 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-----------SVQEGSLKVLGQELYGASEKELVQLRRNIGY 86 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEEhHhcCHhHHHHHHhheEE
Confidence 45788999999999999999999999999999999994 89999999999876421 1124
Q ss_pred CCCC-CCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
.++. .++..+++.++..+....+.. ......+.+.++..+.- ...+ .....+++ ..+|
T Consensus 87 ~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~----~~~~~lS~G~~qrv~laral~~~p- 160 (220)
T TIGR02982 87 IFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLD----YYPHNLSGGQKQRVAIARALVHRP- 160 (220)
T ss_pred EcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhh----cChhhCCHHHHHHHHHHHHHhcCC-
Confidence 4554 334457888877654322211 11111222223322210 0011 11111221 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCc
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKD 200 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~ 200 (263)
+++++|||+.+.|....+...+.+.+.... +.+ |+++ ..++||++ .+|.+|++
T Consensus 161 -~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v-~~l~~g~~ 219 (220)
T TIGR02982 161 -KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRI-VHMEDGKL 219 (220)
T ss_pred -CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEE-EEEECCEE
Confidence 899999999999999998888888877542 333 9987 45799999 88888764
No 198
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.5e-17 Score=143.32 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=120.2
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (263)
+.+....++.++.+|+++||+|+||||||||+++|+|+..+.. ..|+.|.|.++|.++.. .. ..|
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 105 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID------IARVTGQILYRGIDINRKEINVYEMRKHIGM 105 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccC------CCCcceEEEECCEEcccccCChHHHhcceEE
Confidence 3567889999999999999999999999999999999951000 02589999999876531 11 124
Q ss_pred CCCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.++.......++.|++.+...... .......+.+.++.++.- ..++...+.....+++ ..+|
T Consensus 106 v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~i~~~~~~~~~~LS~G~~qrl~laral~~~p-- 182 (267)
T PRK14237 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALW-DQVKDDLHKSALTLSGGQQQRLCIARAIAVKP-- 182 (267)
T ss_pred EecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC-chhhhhhcCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 555422223588888765422111 001112222223333210 0000000111112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.. .+.+ |+...+.++||++ .+|++|+++..++.+
T Consensus 183 ~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 183 DILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYT-AFFYLGDLIEYDKTR 247 (267)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEE-EEEECCEEEEeCCHH
Confidence 8999999999999999888888887764 3332 9999999999999 999999998776543
No 199
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=5.6e-17 Score=139.30 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=116.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....++..+.+|++++|+|+||||||||+++|+|+. .|+.|.|.++|+.+... . ..|.++
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----------~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 82 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-----------DVSSGSILIDGQDIREVTLDSLRRAIGVVPQ 82 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence 35678889999999999999999999999999999994 89999999999766421 1 125555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc--eeEEee-ccC---CCceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG--IFHVLR-AFE---DPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~--~l~vv~-~~~---~~~~~~l~~------------~~~P~~ 145 (263)
.......++.|+..+....... ..+...+..+.. .+..+. .++ ......+++ ..+|
T Consensus 83 ~~~~~~~tv~~nl~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p-- 156 (236)
T cd03253 83 DTVLFNDTIGYNIRYGRPDATD----EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP-- 156 (236)
T ss_pred CChhhcchHHHHHhhcCCCCCH----HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC--
Confidence 5322346888887664322111 111111111100 000000 000 011112222 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+...+...+.+.+... +.+ |+...+.. |+++ .+|.+|+++..++
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~-~~l~~g~i~~~~~ 218 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKI-IVLKDGRIVERGT 218 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEE-EEEECCEEEeeCC
Confidence 89999999999999999988888877654 433 99988865 9999 9999999877654
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.4e-17 Score=143.79 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=118.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+.... ...|+.|.|.++|.++.. +. ..|.
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 110 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELV------PSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV 110 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCC------CCCCCceeEEECCEEcccccccHHHHhhhEEEE
Confidence 45678899999999999999999999999999999994100 001689999999876521 11 1245
Q ss_pred CCCCCCcceehhhhhccccCccc--ccch-HHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~--~~~~-~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.+++.+...... .... ...+.+.++..+.... +...-+.....+++ ..+| +
T Consensus 111 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~~LSgGe~qrv~laraL~~~p--~ 187 (271)
T PRK14238 111 FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE-LKDRLHDNAYGLSGGQQQRLCIARCLAIEP--D 187 (271)
T ss_pred ecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-HHHHHhcCcccCCHHHHHHHHHHHHHHcCC--C
Confidence 55522222488888765422111 1001 1112222222211000 00000111112222 4578 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+... +.+ |+...+.++|+++ .+|.+|+++..++.
T Consensus 188 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i-~~l~~G~i~~~g~~ 250 (271)
T PRK14238 188 VILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKT-AFFLNGYVNEYDDT 250 (271)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999999888888877653 333 9999999999999 99999998877653
No 201
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=5.5e-17 Score=135.34 Aligned_cols=161 Identities=13% Similarity=0.128 Sum_probs=110.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-Hh--hhcCCCC-CC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKS-AV 86 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-l~--~~~~~~~-~~ 86 (263)
.+....+++++++|++++|+|+||||||||+++|+|... ..|+.|.|.++|+.+.. .. ..|.++. ..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 90 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT---------AGVITGEILINGRPLDKNFQRSTGYVEQQDVH 90 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCcceEEEECCEehHHHhhhceEEecccCcc
Confidence 457888999999999999999999999999999999731 14789999999987631 11 1244443 33
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHH
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~ 166 (263)
+..+++.|+..+..... ...-+++ +.+ .+.+++ ..+| +++++|||+...|+.......
T Consensus 91 ~~~~tv~~~l~~~~~~~-~LSgGe~-----qrv----~la~al----------~~~p--~vlllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 91 SPNLTVREALRFSALLR-GLSVEQR-----KRL----TIGVEL----------AAKP--SILFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred ccCCcHHHHHHHHHHHh-cCCHHHh-----HHH----HHHHHH----------hcCC--cEEEEeCCCcCCCHHHHHHHH
Confidence 44567777765432110 0001111 011 001111 2356 789999999999999999888
Q ss_pred HHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhc-CCcccc
Q 024748 167 EDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQD-GKDVRL 203 (263)
Q Consensus 167 ~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~-G~~~~~ 203 (263)
+.+.+....+.+ |+.+ .+..+||++ .+|++ |++++.
T Consensus 149 ~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i-~~l~~~g~i~~~ 191 (192)
T cd03232 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRL-LLLKRGGKTVYF 191 (192)
T ss_pred HHHHHHHHcCCEEEEEEcCChHHHHhhCCEE-EEEcCCCeEEeC
Confidence 888876543433 9887 478899999 88888 887654
No 202
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.4e-17 Score=148.39 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=120.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------hh--hc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~~--~~ 80 (263)
..+...++.+|.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|+++..+ .. .|
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-----------~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~ 96 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-----------TPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-----------CCCCcEEEECCEEcCcCCHHHHHHHhCCEEE
Confidence 46889999999999999999999999999999999994 78899999999765321 11 13
Q ss_pred CCCC---CCCcceehhhhhccccCcc---cccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 81 KPKS---AVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 81 ~~~~---~~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
.+|. .+...+++.+........+ ........+.+.++.++.--...+. ....+++ +.+
T Consensus 97 v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~----~p~~LSgGq~QRv~iArAL~~~ 172 (327)
T PRK11308 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR----YPHMFSGGQRQRIAIARALMLD 172 (327)
T ss_pred EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC----CCccCCHHHHHHHHHHHHHHcC
Confidence 3333 3444566665553211111 0111112233334433320001111 1112332 567
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
| +++++|||+...|.......++.+.++... +. +|++..+.++||++ .+|..|+++..|+.
T Consensus 173 P--~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv-~vm~~G~ive~g~~ 239 (327)
T PRK11308 173 P--DVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV-MVMYLGRCVEKGTK 239 (327)
T ss_pred C--CEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 8 899999999999999999988888877643 43 39999999999999 99999999877753
No 203
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=1.3e-16 Score=135.36 Aligned_cols=165 Identities=14% Similarity=0.092 Sum_probs=109.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--Hh--hhcCCCC-C
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS-A 85 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~--~~~~~~~-~ 85 (263)
.+....++.++.+|++++|+|+||||||||+++|+|.. +|+.|.|.++|+.+.. .. ..|.++. .
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-----------HVESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-----------CCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence 45788999999999999999999999999999999994 8999999999876531 11 1244443 3
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
++..+++.|+..+....+.. .....+.+.++..+.- ...+..+..+++ ..+| +++++|||
T Consensus 93 ~~~~~t~~e~l~~~~~~~~~-~~~~~~~~~l~~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p--~llllDEP 164 (214)
T PRK13543 93 LKADLSTLENLHFLCGLHGR-RAKQMPGSALAIVGLA-----GYEDTLVRQLSAGQKKRLALARLWLSPA--PLWLLDEP 164 (214)
T ss_pred cccCCcHHHHHHHHHHhcCC-cHHHHHHHHHHHcCCh-----hhccCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence 44456777776543221111 1111112222222210 000111111221 4578 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh
Q 024748 154 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL 195 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L 195 (263)
+...|+...+...+.+.+....+.+ |+...+.++|+++ .+|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i-~~l 210 (214)
T PRK13543 165 YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM-LTL 210 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceE-EEE
Confidence 9999999999888888776544433 9999999999987 443
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.7e-17 Score=159.81 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=121.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------Hh--hhcC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LC--QLFK 81 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~--~~~~ 81 (263)
.+...++..|.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. +. ..|.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v 406 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-----------ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-----------CCCCcEEEECCEECCcCCHHHHHHhcCCeEEE
Confidence 4678899999999999999999999999999999994 8999999999875421 11 1234
Q ss_pred CCC---CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 82 PKS---AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 82 ~~~---~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
+|. .++..+++.+++.+....+. .......+.+.++.++.- ..+.+..+..+++ +.+|
T Consensus 407 ~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~----~~~~~~~~~~LSgGqrQRv~iAraL~~~p 482 (623)
T PRK10261 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL----PEHAWRYPHEFSGGQRQRICIARALALNP 482 (623)
T ss_pred ecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC----HHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 443 34556788887764321111 011112222233332210 0011111122332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.++... +.+ |++..+..+||++ .+|.+|+++..|+.
T Consensus 483 --~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri-~vl~~G~iv~~g~~ 548 (623)
T PRK10261 483 --KVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV-AVMYLGQIVEIGPR 548 (623)
T ss_pred --CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 899999999999999999988888877543 433 9999999999999 99999999877653
No 205
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=6.8e-17 Score=153.72 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=117.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------HhhhcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQLFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l~~~~~~~~ 84 (263)
....++..+.+|+++||+|+||||||||+++|+|+ .+|+.|.|.++|..+.. ....|.|+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL-----------RPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 35678899999999999999999999999999999 48899999998875421 112355553
Q ss_pred ----CCCcceehhhhhcccc----Ccc-cccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 85 ----AVPAFLEIHDIAGLVR----GAH-EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 85 ----~~~~~l~~~d~~g~~~----~~~-~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
.++..+++.++..... ... ........+.+.++..+. -....+..+..+++ +.+|
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCC----CCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence 2444567766653210 000 000011112222222221 00011111223333 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.++...+.+ |+.+.+.++||++ .+|.+|+++..++.
T Consensus 423 --~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i-~~l~~G~i~~~~~~ 487 (510)
T PRK15439 423 --QLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRV-LVMHQGEISGALTG 487 (510)
T ss_pred --CEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEEcc
Confidence 899999999999999999988888877654443 9999999999999 89999998866543
No 206
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2.9e-17 Score=142.39 Aligned_cols=185 Identities=11% Similarity=0.100 Sum_probs=117.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------H--hhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l--~~~~~ 81 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+..+. ...|+.|.|.++|.++.. . ...|.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~------~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~ 89 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI------PGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMV 89 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCC------CCCCcceEEEECCEEcccchhhHHHhhhhEEEE
Confidence 46788899999999999999999999999999999984100 001378999999876521 1 11244
Q ss_pred CCCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.|+..+....+.. ......+.+.++.++.. ..+....+.....+++ ..+| +
T Consensus 90 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p--~ 166 (250)
T PRK14262 90 FQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW-DEVKSELNKPGTRLSGGQQQRLCIARALAVEP--E 166 (250)
T ss_pred ecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC-chhHHHHhCChhhcCHHHHHHHHHHHHHhCCC--C
Confidence 554222237888887654321110 01111122222222210 0000000111112222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|++|++...++.
T Consensus 167 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 229 (250)
T PRK14262 167 VILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYI-AFMYRGELIEYGPT 229 (250)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 9999999999999998888888877643 333 9999999999999 99999998877653
No 207
>PLN03211 ABC transporter G-25; Provisional
Probab=99.64 E-value=3.7e-17 Score=159.36 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=123.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ccceeeeCCcchHHH---hhhcCCCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL---CQLFKPKS 84 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p--~~G~i~~~g~~~~~l---~~~~~~~~ 84 (263)
+......+++.+++|+++||+||||||||||+++|+|.. +| .+|.|.++|+++... ...|.+|.
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~-----------~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI-----------QGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC-----------CCCceeEEEEECCEECchhhccceEEECcc
Confidence 456788999999999999999999999999999999994 55 489999999765321 11255655
Q ss_pred -CCCcceehhhhhccccCccccc-----chHHHHHHHHhhhcceeEEeecc-CCCceeeecc------------cCCCch
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~-----~~~~~~~~~~~~~d~~l~vv~~~-~~~~~~~l~~------------~~~P~~ 145 (263)
..+..+++.|+..+........ .....+.+.++..+. -+..+.. .+.....+++ ..+|
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P-- 225 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-TKCENTIIGNSFIRGISGGERKRVSIAHEMLINP-- 225 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC--
Confidence 4455789999987753221110 011111122222111 0000000 0000111222 4578
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+.+.|........+.++++...+.+ |+.. .+.++||++ .+|.+|++++.|+.+
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i-ilL~~G~iv~~G~~~ 292 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV-LVLSEGRCLFFGKGS 292 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE-EEecCCcEEEECCHH
Confidence 899999999999999999988888877654544 8887 588999999 999999999988754
No 208
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.64 E-value=7.6e-17 Score=137.74 Aligned_cols=167 Identities=14% Similarity=0.044 Sum_probs=108.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H--hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L--CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l--~~~~~~~ 83 (263)
.+....+++++++|++++|+|+||||||||+++|+|+. +|++|.|.++|..+.. . ...|.++
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-----------SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 56788999999999999999999999999999999994 8999999999875421 1 1124444
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.......++.|+..+.............+.+.++..+.. ....+..+..+++ ..+| +++++|
T Consensus 89 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllD 162 (225)
T PRK10247 89 TPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----DTILTKNIAELSGGEKQRISLIRNLQFMP--KVLLLD 162 (225)
T ss_pred ccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----hHHhcCCcccCCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 422223588888765322111110111222223332210 0000111112222 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhh
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQ 196 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~ 196 (263)
||+...|+...+...+.+.+.... +.+ |+.+.+. .||++ .+|.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i-~~l~ 211 (225)
T PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKV-ITLQ 211 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEE-EEEe
Confidence 999999999998888888776532 333 9988885 69998 6663
No 209
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4e-17 Score=142.31 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=117.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--C---ccceeeeCCcchHH-------Hh-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--P---NEARVNIPDERFEW-------LC- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~--p---~~G~i~~~g~~~~~-------l~- 77 (263)
.+....++.+|++|+++||+|+||||||||+++|+|+. . | +.|.|.++|+.+.. ..
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 93 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI-----------QMVPNVKLTGEMNYNGSNILKGKVDLVELRK 93 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------cCCCCCCCceEEEECCEEccccccCHHHHhh
Confidence 46788899999999999999999999999999999984 3 3 58999999876531 11
Q ss_pred -hhcCCCC-CCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 78 -QLFKPKS-AVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 78 -~~~~~~~-~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
..|.++. .++. .++.|+..+....... ......+.+.++..+..-.+.+.. +.....+++ .
T Consensus 94 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 94 NIGMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred ceEEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHh
Confidence 1245554 2232 3788877654322110 111111222222222100000000 011111221 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.+| +++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|++|+++..|+.
T Consensus 172 ~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 238 (259)
T PRK14274 172 TNP--DVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQT-AFFYMGELVECNDT 238 (259)
T ss_pred cCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 578 89999999999999999888888887653 333 9999999999999 99999998877653
No 210
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.1e-17 Score=143.67 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=117.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hhh--hcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~--~~~ 81 (263)
.+....++++|.+|++++|+|+||||||||+++|+|+..+. .-.|+.|.|.++|+.+.. ... .|.
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 105 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTI------DGCRVTGKITLDGEDIYDPRLDVVELRARVGMV 105 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEECcccccchHHHhhceEEE
Confidence 35678899999999999999999999999999999994100 001489999999876531 111 244
Q ss_pred CCC-CCCcceehhhhhccccCccc----ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
++. .++. .++.|++.+....+. .......+.+.++.++..-.+-+.. +.....+++ ..+|
T Consensus 106 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p- 182 (267)
T PRK14235 106 FQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSP- 182 (267)
T ss_pred ecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCC-
Confidence 544 2232 478888765432111 0111122223333332200000000 011112222 4577
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+.+.+..+|+++ .+|++|+++..++.
T Consensus 183 -~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 246 (267)
T PRK14235 183 -EVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRT-AFFHLGNLVEVGDT 246 (267)
T ss_pred -CEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999888888877643 333 9999999999999 99999998877653
No 211
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.64 E-value=5.2e-17 Score=142.39 Aligned_cols=179 Identities=20% Similarity=0.189 Sum_probs=117.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. .|++|.|.++|..+... . ..|
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~ 93 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-----------SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQM 93 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEeccccChhHHHHHHhcEEE
Confidence 56788999999999999999999999999999999994 89999999998765321 1 114
Q ss_pred CCCC---CCCcceehhhhhccccCcc-c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 81 KPKS---AVPAFLEIHDIAGLVRGAH-E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 81 ~~~~---~~~~~l~~~d~~g~~~~~~-~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
.++. .++...++.++..+..... . .......+.+.+...+.--.+.+ .....+++ ..+
T Consensus 94 v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~LS~Ge~qrl~laral~~~ 169 (268)
T PRK10419 94 VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD----KRPPQLSGGQLQRVCLARALAVE 169 (268)
T ss_pred EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhh----CCCccCChHHHHHHHHHHHHhcC
Confidence 4443 2334466666654321100 0 00001112222222211000111 11111222 467
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
| +++++|||+...|+...+...+.+.+.... +.+ |+...+..+||++ .+|.+|++...++..
T Consensus 170 p--~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i-~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 170 P--KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRV-MVMDNGQIVETQPVG 237 (268)
T ss_pred C--CEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEE-EEEECCEEeeeCChh
Confidence 8 899999999999999888888888776543 333 9999999999999 889999987776543
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.3e-17 Score=142.90 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=118.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++.|++|++++|+|+||||||||+++|+|+..+. ...|+.|.|.++|+.+.. +. ..|.
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 99 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY------PEQRAEGEILLDGENILTPKQDIALLRAKVGMV 99 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC------CCCCcceEEEECCEEccccccchHHHhcceEEE
Confidence 35788899999999999999999999999999999994100 001579999999876521 11 1244
Q ss_pred CCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.|+..+...... ......++.+.++.++..-. +....+.....+++ ..+| +
T Consensus 100 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~LS~Gq~qrv~laral~~~p--~ 176 (260)
T PRK10744 100 FQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-VKDKLHQSGYSLSGGQQQRLCIARGIAIRP--E 176 (260)
T ss_pred ecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-hHHHHhcCCCCCCHHHHHHHHHHHHHHCCC--C
Confidence 44422223688888765432111 01111122222333321000 00000011111222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+...+...+.+.+... +.+ |+...+..+|+++ .+|++|+++..++.
T Consensus 177 lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 239 (260)
T PRK10744 177 VLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYT-AFMYLGELIEFGNT 239 (260)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999998888888887643 333 9999999999999 99999998877653
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.2e-17 Score=146.85 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=123.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++..|++|+++||+|+||||||||+++|+|+..... -.|+.|.|.++|..+.. +. ..|.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~------~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v 168 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE------GTSHEGEIYFLGTNTRSKKISSLELRTRIGMV 168 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEccccccchHhhhccEEEE
Confidence 457889999999999999999999999999999999951100 02678999999987641 11 1256
Q ss_pred CCCCCCcceehhhhhccccCccc--ccch-HHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~--~~~~-~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
|+.......++.|++.+...... .... ...+...++.+... .-++..-+.....+++ ..+| +
T Consensus 169 ~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p--~ 245 (329)
T PRK14257 169 FQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-DEVKDDLDKAGNALSGGQQQRLCIARAIALEP--E 245 (329)
T ss_pred ecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-chhhhhhhCCcccCCHHHHHHHHHHHHHHhCC--C
Confidence 66644446788898876432211 1111 11123333333310 0001000011112222 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++++|||+...|+.......+.+.+... +.+ |++..+.++||++ .+|++|+++..|+..
T Consensus 246 IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Dri-ivl~~G~i~e~g~~~ 309 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDET-VFFYQGWIEEAGETK 309 (329)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 9999999999999988887777776653 333 9999999999999 999999998877643
No 214
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.8e-17 Score=142.37 Aligned_cols=185 Identities=14% Similarity=0.079 Sum_probs=117.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+..+. | ..|++|.|.++|+++.. .. ..|.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~---~---~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~ 90 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVI---P---GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMV 90 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcc---c---CCCcceEEEECCEeccccccChHHHhcceEEE
Confidence 35778899999999999999999999999999999994100 0 00379999999876521 11 1244
Q ss_pred CCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++..+++.|+..+...... .......+.+.++.++..-. +....+..+..+++ ..+|
T Consensus 91 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~LS~G~~qrv~laral~~~p-- 167 (258)
T PRK14241 91 FQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-VKDRLDKPGGGLSGGQQQRLCIARAIAVEP-- 167 (258)
T ss_pred ccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-hhhHhhCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 444 34446788888765432111 01111122222222221000 00000111112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhh------cCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ------DGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~------~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+.. .+.+ |+...+.++||++ .+|. +|+++..++.
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i-~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 168 DVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQT-AFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE-EEEecccCCCCceEEecCCH
Confidence 8999999999999999888888887764 2333 9999999999999 7775 6888777653
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.5e-17 Score=141.37 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=119.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++++|++|+++||+|+||||||||+++|+|+.... ...|+.|.|.++|+.+.. +. ..|.
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~ 90 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLV------PSARVTGKILLDDTDIYDRGVDPVSIRRRVGMV 90 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCC------CCCCCceEEEECCEEcccccCChHHhhccEEEE
Confidence 45788899999999999999999999999999999994100 001368999999876531 11 1244
Q ss_pred CCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++..+++.|++.+...... .......+.+.++..+..-.+-... +.....+++ ..+|
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p-- 167 (252)
T PRK14256 91 FQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKP-- 167 (252)
T ss_pred ecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCC--
Confidence 554 34446788887765322111 0111122222233332110000000 001111221 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|.+|++...++.
T Consensus 168 ~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 231 (252)
T PRK14256 168 EVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYT-AFFYMGDLVECGET 231 (252)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999998888888877753 333 9999999999999 89999998877653
No 216
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.4e-17 Score=141.28 Aligned_cols=183 Identities=11% Similarity=0.084 Sum_probs=117.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ccceeeeCCcchHH-------Hh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEW-------LC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p--~~G~i~~~g~~~~~-------l~--~~ 79 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+... ..| +.|.|.++|.++.. .. ..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~--------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 87 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL--------IPATRLEGEIRIDGRNIYDKGVQVDELRKNVG 87 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc--------cCCCCCceEEEECCEecccccccHHHHhhheE
Confidence 3567788999999999999999999999999999996200 133 58999999876532 11 12
Q ss_pred cCCCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++.......++.|++.+...... .......+.+.++.++.- ..+....+.....+++ ..+|
T Consensus 88 ~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LS~G~~qrv~laral~~~p- 165 (250)
T PRK14245 88 MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW-DEVKDKLKESAFALSGGQQQRLCIARAMAVSP- 165 (250)
T ss_pred EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC-cchhhhhhCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 4555422123477787765321111 011112222233322210 0000000011111222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+...+.++||++ .+|++|+++..++.
T Consensus 166 -~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v-~~l~~G~~~~~~~~ 229 (250)
T PRK14245 166 -SVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKT-AFFYMGEMVEYDDT 229 (250)
T ss_pred -CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEE-EEEECCEEEEECCH
Confidence 8999999999999999999888888764 3333 9999999999999 99999998877654
No 217
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.64 E-value=4.7e-17 Score=155.46 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=120.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (263)
.+....++..+..|+++||+|+||||||||+++|+|+. |++|.|.++|+.+... . ..|
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------------NSQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCcEEEECCEEccccchhhHHHhhhceEE
Confidence 45788899999999999999999999999999999993 5789999998755311 1 124
Q ss_pred CCCC---CCCcceehhhhhccccCccc----ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 81 KPKS---AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 81 ~~~~---~~~~~l~~~d~~g~~~~~~~----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
.+|. .++..+++.|++.+....+. .......+.+.++..+. -....+..+..+++ ..
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~la~al~~ 442 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL----DPETRHRYPAEFSGGQRQRIAIARALIL 442 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCC----CHHHHhcCCccCCHHHHHHHHHHHHHhC
Confidence 4444 24556788888765321110 00011122222332221 00000111122332 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+...+...+.+.+.... +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 443 ~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~~~ 510 (529)
T PRK15134 443 KP--SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV-IVLRQGEVVEQGDC 510 (529)
T ss_pred CC--CEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEEEcCH
Confidence 78 899999999999999999988888877543 333 9999999999999 99999998776653
No 218
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.64 E-value=5.9e-17 Score=137.40 Aligned_cols=169 Identities=18% Similarity=0.158 Sum_probs=109.1
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceee-eCCcchHHHhhhcCCCCCCCcceeh
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEI 92 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~-~~g~~~~~l~~~~~~~~~~~~~l~~ 92 (263)
...++.++++|+++||+|+||||||||+++|+|+. +|++|.|. +++..+. ++ ....++..+++
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----------~~~sG~i~~~~~~~~~-~~----~~~~l~~~ltv 66 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-----------APDEGDFIGLRGDALP-LG----ANSFILPGLTG 66 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------cCCCCCEEEecCceec-cc----cccccCCcCcH
Confidence 45788999999999999999999999999999994 89999987 6664321 11 11234456788
Q ss_pred hhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHH
Q 024748 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~ 160 (263)
.++..+....+... ...+...+.... . +....+..+..+++ ..+| +++++|||+...|..
T Consensus 67 ~enl~~~~~~~~~~--~~~~~~~~~~~~---~-l~~~~~~~~~~lS~G~~qrv~la~al~~~p--~llllDEP~~~lD~~ 138 (213)
T PRK15177 67 EENARMMASLYGLD--GDEFSHFCYQLT---Q-LEQCYTDRVSEYSVTMKTHLAFAINLLLPC--RLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHh---C-hhHHhhchHhhcCHHHHHHHHHHHHHhcCC--CEEEECCCCccCCHH
Confidence 88876643322110 111111111100 0 00000111111111 4567 899999999989998
Q ss_pred HHHHHHHHHHHHhhh-c---cchhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 161 FMERRIEDVEKSMKR-S---NDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~-~---~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
......+.+.+.... + .+|++..+..+||++ .+|.+|++++.+++.
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAF-GVLLHGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCee-EEEECCeEEEeCCHH
Confidence 877777666443322 1 139999999999999 899999999887654
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=6e-17 Score=153.75 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=120.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|++|.|.++|+++.. .. ..|.+
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 85 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-----------QPDAGSILIDGQEMRFASTTAALAAGVAIIY 85 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 35678899999999999999999999999999999994 7999999999876521 11 12444
Q ss_pred CC-CCCcceehhhhhccccCcc--c---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAH--E---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~--~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|. .++..+++.|++.+..... . .......+.+.++..+.- ...+..+..+++ ..+|
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~qrv~laral~~~p- 159 (501)
T PRK11288 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----IDPDTPLKYLSIGQRQMVEIAKALARNA- 159 (501)
T ss_pred echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----CCcCCchhhCCHHHHHHHHHHHHHHhCC-
Confidence 44 3445678888887643211 0 001111222223332210 001111222332 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|+++..
T Consensus 160 -~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i-~~l~~G~i~~~ 221 (501)
T PRK11288 160 -RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAI-TVFKDGRYVAT 221 (501)
T ss_pred -CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEee
Confidence 899999999999999999988888877544433 9999999999999 99999988754
No 220
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.7e-17 Score=141.13 Aligned_cols=180 Identities=10% Similarity=0.061 Sum_probs=118.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchHH-------H--
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------L-- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~~-------l-- 76 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. .| ++|.|.++|.++.. .
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH-----------DLTPGARVTGRILLDGQDIYGPRVDPVAMRR 85 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCcCCCCceeEEECCEEcccCccCHHHhhc
Confidence 46788999999999999999999999999999999994 44 37999999876531 1
Q ss_pred hhhcCCCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 77 CQLFKPKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 77 ~~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
...|.++. .++..+++.|+..+...... . ......+.+.++..+..-.+-... +..+..+++ .
T Consensus 86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCcccCCHHHHHHHHHHHHHh
Confidence 11244554 34455788888765322111 1 111111212222221100000000 111112222 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.+| +++++|||+...|+...+...+.+.+... +.+ |+...+..+||++ .+|++|++...++.
T Consensus 165 ~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 231 (252)
T PRK14272 165 VEP--EILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTT-SFFLVGDLVEHGPT 231 (252)
T ss_pred cCC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 678 89999999999999998888888877653 333 9999999999999 99999998877653
No 221
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.64 E-value=7.5e-17 Score=135.67 Aligned_cols=162 Identities=12% Similarity=0.036 Sum_probs=105.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~--~~ 79 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. .. ..
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-----------KFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 45678899999999999999999999999999999994 8999999999876421 11 12
Q ss_pred cCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++. .++..+++.|+..+...... .......+.+.++..+. ..+.+..+..+++ ..+|
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~lS~G~~qr~~laral~~~p- 153 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-----NLKLKQKIYELSGGEQQRVALARAILKDP- 153 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCc-----hhhhcCChhhCCHHHHHHHHHHHHHHcCC-
Confidence 34444 34446788887765322111 01111222222332221 0111111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
+++++|||+...|+...+...+.+.+....+.+ |+...+ .+|+++
T Consensus 154 -~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i 203 (206)
T TIGR03608 154 -PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRV 203 (206)
T ss_pred -CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEE
Confidence 899999999999999999988888876543332 888754 577765
No 222
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.64 E-value=4.3e-17 Score=141.99 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=115.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc-----hHH-----H----
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEW-----L---- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~-----~~~-----l---- 76 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|++ +.. .
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~ 87 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-----------APDAGEVHYRMRDGQLRDLYALSEAERRRLL 87 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCccccccccccCCHHHHHHHh
Confidence 45778899999999999999999999999999999994 8999999999876 321 0
Q ss_pred --hhhcCCCCC---CCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc---------
Q 024748 77 --CQLFKPKSA---VPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD--------- 139 (263)
Q Consensus 77 --~~~~~~~~~---~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~--------- 139 (263)
...|.++.. ++..+++.+++.+...... . ......+.+.++..+.- ...-+.....+++
T Consensus 88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID----AARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred hcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCC----hhHHhCCCccCCHHHHHHHHHH
Confidence 012444432 2334455555432110000 0 01111222222222110 0000111112222
Q ss_pred ---cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ---~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 164 ral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i-~~l~~g~i~~~~~~ 236 (258)
T PRK11701 164 RNLVTHP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL-LVMKQGRVVESGLT 236 (258)
T ss_pred HHHhcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 4577 899999999999999998888888776543 333 9999999999999 99999998877653
No 223
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.64 E-value=7e-17 Score=153.25 Aligned_cols=178 Identities=12% Similarity=0.053 Sum_probs=121.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--ccceeeeCCcchHHH--------hhhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p--~~G~i~~~g~~~~~l--------~~~~ 80 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +| ++|.|.++|+.+... ...|
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-----------PHGTWDGEIYWSGSPLKASNIRDTERAGIVI 82 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence 35678899999999999999999999999999999994 54 799999998754211 1124
Q ss_pred CCCC-CCCcceehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
.+|. .++..+++.|++.+...... .......+.+.++..+.- ....+..+..+++ ..
T Consensus 83 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 83 IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD----ADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred EeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCC----CCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 4554 34556888888766432110 001111222222332210 0000111222332 45
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.++...+.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 159 ~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i-~~l~~G~i~~~~~~ 225 (500)
T TIGR02633 159 QA--RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI-CVIRDGQHVATKDM 225 (500)
T ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEE-EEEeCCeEeeecCc
Confidence 78 899999999999999999988888877544433 9999999999999 99999998776543
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.4e-17 Score=141.75 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=120.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++.+++|+++||+|+||||||||+++|+|+..+..+ .|+.|.|.++|+.+.. .. ..|.
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~------~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 94 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG------FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC------CCCceEEEECCEeccccccchHhhhhceEEE
Confidence 4567889999999999999999999999999999999511000 0378999999876521 11 1255
Q ss_pred CCCCCCcceehhhhhccccCcccc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
++......+++.|+..+....... ......+.+.++.++..-.+.+.. +.....+++ ..+| +++
T Consensus 95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p--~ll 171 (261)
T PRK14263 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEP--EVL 171 (261)
T ss_pred ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCC--CEE
Confidence 555322258888888654322111 111122333334333210000000 011111221 4577 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhh--------cCCccccCCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ--------DGKDVRLGDW 206 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~--------~G~~~~~g~~ 206 (263)
++|||+...|+......++.+.+.. .+.+ |+.+.+.++||++ .+|+ +|+++..++.
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v-~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTT-AFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEE-EEEecccccccCCceEEEeCCH
Confidence 9999999999999999888888774 3333 9999999999999 8885 7888877653
No 225
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.5e-17 Score=141.14 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=118.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+.... | ..|+.|+|.++|+.+.. .. ..|.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 89 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLI---P---SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMV 89 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---C---CCCCceEEEECCEEccccccchHHHhccEEEE
Confidence 46788899999999999999999999999999999984100 0 00268999999876531 11 1255
Q ss_pred CCCCCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.++..+....... ......+.+.++.++..-.+.. ..+.....+++ ..+| +
T Consensus 90 ~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p--~ 166 (250)
T PRK14240 90 FQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-RLKKSALGLSGGQQQRLCIARALAVEP--E 166 (250)
T ss_pred ecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-HHhcCCCCCCHHHHHHHHHHHHHhcCC--C
Confidence 554222237888877654321110 0111222222333321000000 00011111221 4577 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+.......+.+.+.. .+.+ |+.+.+.++|+++ .+|++|+++..++.
T Consensus 167 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 229 (250)
T PRK14240 167 VLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKT-AFFLNGEIVEFGDT 229 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEE-EEEECCEEEEeCCH
Confidence 999999999999999888888887764 2333 9999999999999 99999998877653
No 226
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.64 E-value=1.1e-16 Score=131.30 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=100.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....++..+.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... .. .|.++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-----------RPTSGRVRLDGADISQWDPNELGDHVGYLPQ 83 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-----------CCCCCeEEECCEEcccCCHHHHHhheEEECC
Confidence 35778899999999999999999999999999999994 89999999998765321 11 13333
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~ 163 (263)
.......++.|+. .+ -+++-. +.. .+++ ..+| +++++|||+...|+....
T Consensus 84 ~~~~~~~tv~~~l-----LS----~G~~qr--v~l-------a~al----------~~~p--~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 84 DDELFSGSIAENI-----LS----GGQRQR--LGL-------ARAL----------YGNP--RILVLDEPNSHLDVEGER 133 (173)
T ss_pred CCccccCcHHHHC-----cC----HHHHHH--HHH-------HHHH----------hcCC--CEEEEECCccccCHHHHH
Confidence 3211123666654 11 111110 011 1111 2346 788899999999999988
Q ss_pred HHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 164 RRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 164 k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
...+.+.+....+.+ |+...+ ..|+++ .+|.+|+
T Consensus 134 ~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v-~~l~~G~ 172 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRPETL-ASADRI-LVLEDGR 172 (173)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEE-EEEECCC
Confidence 888888776543433 998877 579998 7777775
No 227
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.64 E-value=1.1e-16 Score=132.27 Aligned_cols=151 Identities=21% Similarity=0.325 Sum_probs=101.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... .. .|.++
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-----------~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-----------KPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 45788899999999999999999999999999999994 89999999998654210 00 01111
Q ss_pred CCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~ 160 (263)
+.+..++...... ...-+++ ..+. +.+++ ..+| +++++|||+...|+.
T Consensus 81 --------~l~~~gl~~~~~~~~~~LS~G~~--qrl~-------laral----------~~~p--~llllDEP~~~LD~~ 131 (180)
T cd03214 81 --------ALELLGLAHLADRPFNELSGGER--QRVL-------LARAL----------AQEP--PILLLDEPTSHLDIA 131 (180)
T ss_pred --------HHHHcCCHhHhcCCcccCCHHHH--HHHH-------HHHHH----------hcCC--CEEEEeCCccCCCHH
Confidence 2222222111000 0011111 0000 11111 2457 899999999999999
Q ss_pred HHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 161 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
..+...+.+.+.... +.+ |+.+.+.++||++ .+|.+|++..
T Consensus 132 ~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~-~~l~~g~i~~ 178 (180)
T cd03214 132 HQIELLELLRRLARERGKTVVMVLHDLNLAARYADRV-ILLKDGRIVA 178 (180)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 988888888776543 333 9999999999999 8888887654
No 228
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.8e-17 Score=140.57 Aligned_cols=182 Identities=12% Similarity=0.109 Sum_probs=117.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---ccceeeeCCcchHH-------H--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------L--CQ 78 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p---~~G~i~~~g~~~~~-------l--~~ 78 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+.. ..| +.|.|.++|+.+.. + ..
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND---------LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEI 88 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCccceEEECCEECcCcccchHhhhhcE
Confidence 457788999999999999999999999999999999831 124 58999999876521 1 11
Q ss_pred hcCCCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 79 LFKPKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 79 ~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
.|.++.......++.|++.+...... .......+.+.++.++..-.+.+.. +.....+++ ..+|
T Consensus 89 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14239 89 GMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSP 167 (252)
T ss_pred EEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCC
Confidence 25555522223688888765421111 1111122222222222100000000 011111221 4577
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|++|++...++.
T Consensus 168 --~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 231 (252)
T PRK14239 168 --KIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRT-GFFLDGDLIEYNDT 231 (252)
T ss_pred --CEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999888888877643 333 9999999999999 99999998877654
No 229
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7e-17 Score=140.05 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=116.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+..+. | ..|+.|.|.++|+++.. .. ..|.
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~ 90 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI---E---NIKITGEIKFEGQNIYGSKMDLVELRKEVGMV 90 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccc---c---CCCcceEEEECCEEcccccchHHHhhccEEEE
Confidence 35677899999999999999999999999999999994100 0 01479999999876521 11 1244
Q ss_pred CCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
++.......++.|+..+...... .......+.+.++.++..-.+.. ..+.....+++ ..+| +
T Consensus 91 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~laral~~~p--~ 167 (251)
T PRK14251 91 FQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGGQQQRICIARALAVRP--K 167 (251)
T ss_pred ecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHHHHHHHHHHHHHhcCC--C
Confidence 44422223688887765422111 00011122222333322000000 00011111221 4567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++++|||+...|+...+...+.+.+... +.+ |+...+.++||++ .+|++|++...++
T Consensus 168 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14251 168 VVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQT-AFLMNGDLIEAGP 229 (251)
T ss_pred EEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 9999999999999998888888887643 333 9999999999999 8999999887664
No 230
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.63 E-value=2.2e-16 Score=132.59 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=106.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
.+....++.+|.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+.. +. ..|.++.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-----------PPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 35678899999999999999999999999999999994 8899999998876532 11 1244443
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++...++.|+..+..... ....+.+.++..+.- .+.+..+..+++ ..+| ++.++|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~----~~~~~~~~l~~~~l~-----~~~~~~~~~LS~G~~qrl~laral~~~p--~llllD 150 (201)
T cd03231 82 PGIKTTLSVLENLRFWHADH----SDEQVEEALARVGLN-----GFEDRPVAQLSAGQQRRVALARLLLSGR--PLWILD 150 (201)
T ss_pred cccCCCcCHHHHHHhhcccc----cHHHHHHHHHHcCCh-----hhhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 3344578888876643211 112222333333221 111111112222 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
||+...|+...+...+.+.+....+.+ |+.......|+++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcccee
Confidence 999999999999888888776544433 8888887888876
No 231
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.8e-17 Score=140.17 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=117.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----cceeeeCCcchHH-------Hh-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LC- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-----~G~i~~~g~~~~~-------l~- 77 (263)
.+....++.+|.+|+++||+|+||||||||+++|+|+. +|+ .|.|.++|..+.. ..
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN-----------DIVSGARLEGAVLLDNENIYSPNLDVVNLRK 85 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------CccccCCcccEEEECCEEccccccChHHhhc
Confidence 45778899999999999999999999999999999995 554 6999998876531 11
Q ss_pred -hhcCCCCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 -QLFKPKSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 -~~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.++.......++.|+..+...... .......+...++.++.. ..+....+.....+++ ..
T Consensus 86 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 86 RVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-DEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred eEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-hhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 125555522112478887765432111 001111222222222210 0000000111112222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| +++++|||+...|+.......+.+.+.. .+.+ |+...+.++||++ .+|++|++...++.
T Consensus 165 ~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i-~~l~~G~i~~~~~~ 230 (251)
T PRK14249 165 EP--EVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWT-GFLLTGDLVEYGRT 230 (251)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEE-EEEeCCeEEEeCCH
Confidence 78 8999999999999999888888777664 3333 9999999999999 99999998877653
No 232
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.63 E-value=1.2e-16 Score=131.65 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=104.4
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----hh--hcCCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKSA 85 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~~--~~~~~~~ 85 (263)
+....++.++++|++++|+|+||||||||+++|+|+. +|..|.|.++|..+... .. .|.++..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 84 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-----------KPQQGEITLDGVPVSDLEKALSSLISVLNQRP 84 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCCEEEECCEEHHHHHHHHHhhEEEEccCC
Confidence 5778899999999999999999999999999999994 88999999999866432 11 2444442
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~ 165 (263)
.....++.|+. ....+ .+++- .+. +.+++ ..+| +++++|||+...|+...+..
T Consensus 85 ~~~~~tv~~~i--~~~LS----~G~~q-----rv~----laral----------~~~p--~~lllDEP~~~LD~~~~~~l 137 (178)
T cd03247 85 YLFDTTLRNNL--GRRFS----GGERQ-----RLA----LARIL----------LQDA--PIVLLDEPTVGLDPITERQL 137 (178)
T ss_pred eeecccHHHhh--cccCC----HHHHH-----HHH----HHHHH----------hcCC--CEEEEECCcccCCHHHHHHH
Confidence 22234666654 11111 11111 110 11111 2457 78899999999999998888
Q ss_pred HHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 166 IEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 166 ~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
.+.+.+.. .+.+ |+...+. .|+++ .+|++|+++.
T Consensus 138 ~~~l~~~~-~~~tii~~sh~~~~~~-~~d~~-~~l~~g~i~~ 176 (178)
T cd03247 138 LSLIFEVL-KDKTLIWITHHLTGIE-HMDKI-LFLENGKIIM 176 (178)
T ss_pred HHHHHHHc-CCCEEEEEecCHHHHH-hCCEE-EEEECCEEEe
Confidence 88887764 3333 9998885 69999 8888887654
No 233
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.63 E-value=1.3e-16 Score=151.51 Aligned_cols=177 Identities=10% Similarity=0.078 Sum_probs=120.1
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------H--hhhcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l--~~~~~~~~ 84 (263)
....++..+.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+.. . ...|.+|.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-----------PRTSGYVTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence 357888999999999999999999999999999994 8999999999865421 1 11255554
Q ss_pred ----CCCcceehhhhhccccCc--cc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 85 ----AVPAFLEIHDIAGLVRGA--HE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 85 ----~~~~~l~~~d~~g~~~~~--~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
.++..+++.++..+.... .. ......++.+.+..++. -....+..+..+++ .
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI----KTPSMEQAIGLLSGGNQQKVAIARGLM 411 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC----CCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 244567888877653210 00 00001112222222221 00011111223333 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+| +++++|||+...|+...+...+.+.+....+.+ |+.+.+..+||++ .+|++|+++..++..
T Consensus 412 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 412 TRP--KVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRI-LVMHEGRISGEFTRE 480 (501)
T ss_pred hCC--CEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEeccc
Confidence 567 899999999999999999988888887644433 9999999999999 899999988765443
No 234
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.63 E-value=1.5e-16 Score=135.24 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+... . ..|.++
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-----------KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence 45778899999999999999999999999999999994 78999999999765321 1 125555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC---CCceeeecc------------cCCCchhHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE---DPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~---~~~~~~l~~------------~~~P~~~i~ 148 (263)
.......++.|+..+...... .......++.+...+.+-.....++ ......+++ ..+| +++
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p--~ll 162 (220)
T cd03245 86 DVTLFYGTLRDNITLGAPLAD-DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP--PIL 162 (220)
T ss_pred CCccccchHHHHhhcCCCCCC-HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 522223588887765432211 1011111111111110000000000 000111222 4567 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHHHHhhcCCccc
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKRS----NDKQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~~----~~h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
++|||+...|+.......+.+.+..... .+|+.+.+ ++||++ .+|++|+++.
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v-~~l~~g~i~~ 218 (220)
T cd03245 163 LLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRI-IVMDSGRIVA 218 (220)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEE-EEEeCCeEee
Confidence 9999999999999998888888765321 13998876 799999 8888887654
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.2e-17 Score=147.76 Aligned_cols=182 Identities=10% Similarity=0.034 Sum_probs=118.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh------hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC------QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~------~~ 79 (263)
..+...++.+|.+|+++||+|+||||||||+++|+|+.... ..|+.|.|.++|+.+.. .. ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 92 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEE
Confidence 45788999999999999999999999999999999995100 12678999999876521 11 11
Q ss_pred cCCCC---CCCcceehhhhhccccCcc--cc------cchHHHHHHHHhhhccee--EEeeccCCCceeeecc-------
Q 024748 80 FKPKS---AVPAFLEIHDIAGLVRGAH--EG------QGLGNSFLSHIRAVDGIF--HVLRAFEDPDIIHVDD------- 139 (263)
Q Consensus 80 ~~~~~---~~~~~l~~~d~~g~~~~~~--~~------~~~~~~~~~~~~~~d~~l--~vv~~~~~~~~~~l~~------- 139 (263)
|.+|. .+...+++.+++......+ .+ ......+.+.++.++.-- ...+ .....+++
T Consensus 93 ~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~----~~p~~LSgG~~QRv~ 168 (330)
T PRK15093 93 MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR----SFPYELTEGECQKVM 168 (330)
T ss_pred EEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh----CCchhCCHHHHHHHH
Confidence 34443 2334556666553211000 00 011122233333332200 0001 11112332
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+..+|+......++.+.++... +.+ |++..+.++||++ .+|..|+++..|+.
T Consensus 169 iArAL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri-~vm~~G~ive~g~~ 243 (330)
T PRK15093 169 IAIALANQP--RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI-NVLYCGQTVETAPS 243 (330)
T ss_pred HHHHHHCCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 5678 899999999999999999988888887643 333 9999999999999 99999999877653
No 236
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.63 E-value=1.8e-16 Score=150.03 Aligned_cols=170 Identities=12% Similarity=-0.007 Sum_probs=111.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....++.++.+|+++||+|+||||||||+|+|+|+ ..|++|.|.++|..+.. ... .|.++
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 84 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE-----------LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQ 84 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCceEEECCcccccCCHHHHHHHhceecc
Confidence 3477889999999999999999999999999999999 48999999987754321 111 13333
Q ss_pred CCC----C-----cceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 84 SAV----P-----AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 84 ~~~----~-----~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
... . ..+++.++..+.. ....++.+.+...+. ....+..+..+++ ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 85 RNNTDMLSPGEDDTGRTTAEIIQDEV------KDPARCEQLAQQFGI-----TALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred CcchhhcccchhhccccHHHhcccch------hHHHHHHHHHHHcCC-----HhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 210 0 0233333322110 001112222222211 0000111122232 467
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
| +++++|||+...|+...+...+.+.+....+.+ |+...+..+||++ .+|++|+++..++
T Consensus 154 p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 218 (490)
T PRK10938 154 P--DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFA-GVLADCTLAETGE 218 (490)
T ss_pred C--CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 8 899999999999999999988888887544433 9999999999999 8999999887664
No 237
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=2.3e-16 Score=132.91 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=112.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------hhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~~~~~~~ 83 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|..+... ...|.++
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 89 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-----------EAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ 89 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCCeEEECCEEhHHCCHHHHHhhEEEEec
Confidence 36788999999999999999999999999999999994 89999999999765321 1124455
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.......++.++..+.... . ...+.+.++ ++. ....+++ ..+| +++++|
T Consensus 90 ~~~~~~~tv~~~l~~~~~~--~---~~~~~~~l~--------~~~----~~~~LS~G~~qrv~laral~~~p--~llllD 150 (207)
T cd03369 90 DPTLFSGTIRSNLDPFDEY--S---DEEIYGALR--------VSE----GGLNLSQGQRQLLCLARALLKRP--RVLVLD 150 (207)
T ss_pred CCcccCccHHHHhcccCCC--C---HHHHHHHhh--------ccC----CCCcCCHHHHHHHHHHHHHhhCC--CEEEEe
Confidence 4222234777777543211 0 112222222 111 1111111 4567 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
||+...|+...+...+.+.+.. .+.+ |+...+.. ||++ ..|.+|++...+
T Consensus 151 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~v-~~l~~g~i~~~g 205 (207)
T cd03369 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDKI-LVMDAGEVKEYD 205 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEE-EEEECCEEEecC
Confidence 9999999999888888888764 3333 99988866 9999 888989876554
No 238
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=2.6e-17 Score=134.51 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=124.4
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC-cchHH-----Hh-----hhcC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEW-----LC-----QLFK 81 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g-~~~~~-----l~-----~~~~ 81 (263)
|.+.++..+..|+.-+|||||||||||++.+|+|. ..|+.|++.+.| .++.. ++ .-||
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-----------trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ 88 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-----------TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ 88 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-----------CCCCcceEEEcCchhhccCCHHHHHHhccCcccc
Confidence 67889999999999999999999999999999999 489999999988 55432 22 2355
Q ss_pred CCCCCCcceehhhhhccccCccccc--chHHHH-HHHHhhhcceeEEeeccCCCc---------------eeeecccCCC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQ--GLGNSF-LSHIRAVDGIFHVLRAFEDPD---------------IIHVDDSVDP 143 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~--~~~~~~-~~~~~~~d~~l~vv~~~~~~~---------------~~~l~~~~~P 143 (263)
... ++..+++.|+..+....++.- .+..+. .+.-+..|.++..++..+..+ +-.+ -+-+|
T Consensus 89 ~Pt-Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl-l~Q~P 166 (249)
T COG4674 89 KPT-VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML-LAQDP 166 (249)
T ss_pred CCe-ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee-eccCC
Confidence 433 455899999998876554421 111111 111123444444444332211 1111 14578
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||..+.--+.-++..+.++.++..-+ .|+|..+.++++++ -+|++|.+++.|+++
T Consensus 167 --~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~V-TVlh~G~VL~EGsld 231 (249)
T COG4674 167 --KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKV-TVLHEGSVLAEGSLD 231 (249)
T ss_pred --cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhhee-EEEeccceeecccHH
Confidence 89999999998866655666666666653321 19999999999999 999999999999875
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.2e-16 Score=141.27 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=117.4
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CccceeeeCCcchHH-------Hh--hhc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEW-------LC--QLF 80 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~--p~~G~i~~~g~~~~~-------l~--~~~ 80 (263)
+....++++|.+|++++|+|+||||||||+++|+|+... .+ |+.|.|.++|..+.. .. ..|
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~--------~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 124 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL--------IPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGM 124 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------CCCCCCceEEEECCEEhhhcccchHHhhhcEEE
Confidence 466788999999999999999999999999999997300 01 489999999876531 11 125
Q ss_pred CCCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
.++. .++. .++.|++.+...... . ......+.+.++.++..-.+-+.. +.....+++ ..+|
T Consensus 125 v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p- 201 (286)
T PRK14275 125 VFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL-DKNALGLSGGQQQRLCVARTLAVEP- 201 (286)
T ss_pred ECCCCCCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHh-hCChhhCCHHHHHHHHHHHHHhcCC-
Confidence 5555 2332 488888876432111 0 011112222233322110000000 111112222 4577
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+... +. +|+...+.++||++ .+|.+|+++..++.
T Consensus 202 -~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i-~~L~~G~i~~~g~~ 265 (286)
T PRK14275 202 -EILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYT-MFFYEGVLVEHAPT 265 (286)
T ss_pred -CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999888888877653 22 39999999999999 99999998877653
No 240
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.62 E-value=1.8e-16 Score=134.81 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|.. .|+.|.|.++|..+... . ..|.++
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-----------ELSSGSILIDGVDISKIGLHDLRSRISIIPQ 85 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-----------CCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence 35788999999999999999999999999999999994 89999999999765421 1 124555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhc---ceeEEeeccC---CCceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD---GIFHVLRAFE---DPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d---~~l~vv~~~~---~~~~~~l~~------------~~~P~~ 145 (263)
.......++.|+..+..... ...+.+.++..+ .+......++ ......+++ ..+|
T Consensus 86 ~~~l~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p-- 158 (221)
T cd03244 86 DPVLFSGTIRSNLDPFGEYS-----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS-- 158 (221)
T ss_pred CCccccchHHHHhCcCCCCC-----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC--
Confidence 42223457788775443211 112222222211 1000000000 001111221 4677
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
++.++|||+...|+...+...+.+.+... +. +|+...+.. |+++ .+|++|+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i-~~l~~g~~~~~~ 219 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRI-LVLDKGRVVEFD 219 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEE-EEEECCeEEecC
Confidence 89999999999999999888888877643 33 299988865 9999 888999877654
No 241
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=9.2e-17 Score=140.48 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=116.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++++|+++||+|+||||||||+++|+|+.... ...|+.|.|.++|+.+.. .. ..|.
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 96 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI------PGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMV 96 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc------CCCCCceEEEECCEEccccccChHHHhhhEEEE
Confidence 35678899999999999999999999999999999984100 001478999999876521 11 1244
Q ss_pred CCC-CCCcceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
++. .++. .++.+++.+...... .......+...++.++.... +....+.....+++ ..+| ++
T Consensus 97 ~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~~~~~LSgGq~qrv~laral~~~p--~l 172 (264)
T PRK14243 97 FQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDE-VKDKLKQSGLSLSGGQQQRLCIARAIAVQP--EV 172 (264)
T ss_pred ccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhh-HHHHhcCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 444 2222 477787765432111 00111122222222221000 00000111111222 4578 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhh---------cCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQ---------DGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~---------~G~~~~~g~~ 206 (263)
+++|||+...|+...+...+.+.+...... +|+.+.+..+||++ .+|+ +|+++..++.
T Consensus 173 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v-~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMT-AFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEecccccccccCceEEEeCCH
Confidence 999999999999999888888887653211 29999999999999 8887 6888777653
No 242
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.62 E-value=8.1e-17 Score=130.97 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+++...... .
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~v~~~g~~~~~~~~~----~------ 71 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-----------KPDSGEILVDGKEVSFASPR----D------ 71 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEECCcCCHH----H------
Confidence 35778889999999999999999999999999999994 89999999998654321000 0
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE 170 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~ 170 (263)
......++....+. +++- .+.. .+++ ..+| +++++|||+...|....+...+.+.
T Consensus 72 ~~~~~i~~~~qLS~----G~~q--rl~l-------aral----------~~~p--~illlDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 72 ARRAGIAMVYQLSV----GERQ--MVEI-------ARAL----------ARNA--RLLILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred HHhcCeEEEEecCH----HHHH--HHHH-------HHHH----------hcCC--CEEEEECCCcCCCHHHHHHHHHHHH
Confidence 00000111111111 1111 0111 1111 2456 7888899999999999999888888
Q ss_pred HHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 171 KSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 171 ~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
+....+.+ |+...+.++|+++ .+|++|++++
T Consensus 127 ~~~~~~~tiii~sh~~~~~~~~~d~~-~~l~~g~i~~ 162 (163)
T cd03216 127 RLRAQGVAVIFISHRLDEVFEIADRV-TVLRDGRVVG 162 (163)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 77544433 9999999999999 8888887653
No 243
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.62 E-value=2e-16 Score=132.80 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=108.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--------hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--------~~~~~ 82 (263)
.+....+++++.+|++++|+|+||||||||+++|+|... ..|+.|.|.++|+++.... ..|.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK---------YEVTEGEILFKGEDITDLPPEERARLGIFLAF 83 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCCccEEEECCEECCcCCHHHHhhCcEEEee
Confidence 357788999999999999999999999999999999820 1689999999987653211 12444
Q ss_pred CC-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~ 161 (263)
+. ..+..+++.++..-. .....-+++ +.+. +++++ ..+| ++.++|||+...|...
T Consensus 84 q~~~~~~~~~~~~~l~~~---~~~LS~G~~-----qrv~----laral----------~~~p--~illlDEPt~~LD~~~ 139 (200)
T cd03217 84 QYPPEIPGVKNADFLRYV---NEGFSGGEK-----KRNE----ILQLL----------LLEP--DLAILDEPDSGLDIDA 139 (200)
T ss_pred cChhhccCccHHHHHhhc---cccCCHHHH-----HHHH----HHHHH----------hcCC--CEEEEeCCCccCCHHH
Confidence 44 223334444443110 000011111 0110 01110 2457 7999999999999999
Q ss_pred HHHHHHHHHHHhhhccc-----hhHHHHHH-HHHHHHHHhhcCCccccC
Q 024748 162 MERRIEDVEKSMKRSND-----KQLKIEHE-LCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 162 ~~k~~~~~~~~~~~~~~-----h~~~~i~~-l~d~i~~~L~~G~~~~~g 204 (263)
....++.+.+....+.+ |+...+++ +|+++ .+|++|++...+
T Consensus 140 ~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i-~~l~~G~i~~~~ 187 (200)
T cd03217 140 LRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRV-HVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEE-EEEECCEEEEEc
Confidence 88888888876543433 99998888 79999 999999887766
No 244
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.1e-16 Score=139.93 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=116.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH---------HHh--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------WLC--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~---------~l~--~~ 79 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+..+. | ..+++|.|.++|..+. .+. ..
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~ 102 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY---P---GNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC---C---CCCcccEEEEcCccccccccccCHHHHhccEE
Confidence 36788999999999999999999999999999999994110 0 0027899999875432 111 12
Q ss_pred cCCCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
|.++. .++. .++.|++.+...... .......+.+.++.++..-.+-+ ..+.....+++ ..+|
T Consensus 103 ~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p 180 (265)
T PRK14252 103 MVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQRLCIARALATDP 180 (265)
T ss_pred EEccCCcCCc-chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 45554 2232 377777765421111 00111222233333321100000 00011111221 4567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+... +. +|+.+.+.++|+++ .+|++|+++..++.
T Consensus 181 --~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i-~~l~~G~i~~~g~~ 244 (265)
T PRK14252 181 --EILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYT-AYMYMGELIEFGAT 244 (265)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 89999999999999999888888877653 33 39999999999999 99999998877654
No 245
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.62 E-value=1.6e-16 Score=154.20 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=125.5
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---ccceeeeCCcchHH--Hh--hhcC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW--LC--QLFK 81 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p---~~G~i~~~g~~~~~--l~--~~~~ 81 (263)
.+++..+.+++.+++|+.++|+|+||||||||+++|+|.. .+ ..|.|.++|..+.. .. ..|.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-----------PKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcceeEEEECCEECCHHHHhhhceee
Confidence 3577899999999999999999999999999999999984 44 37999999986532 11 1366
Q ss_pred CCC-CCCcceehhhhhccccCcccccc-----hHHHHHHHHhhhcceeEEeecc-CCCc-eeeecc------------cC
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEGQG-----LGNSFLSHIRAVDGIFHVLRAF-EDPD-IIHVDD------------SV 141 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~~~-----~~~~~~~~~~~~d~~l~vv~~~-~~~~-~~~l~~------------~~ 141 (263)
+|. .....+++.|+..+......... ....+.+.++..+.- +..+.. ++.. ...+++ ..
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~ 183 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLT 183 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHc
Confidence 665 45567899999987543322111 111111222211100 000000 0000 011222 45
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhcCCccccCCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+| +++++|||+.+.|........+.+++....+.+ |+.. .+.++||++ .+|.+|++++.|+.+
T Consensus 184 ~p--~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 184 DP--PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI-ILMAEGRVAYLGSPD 252 (617)
T ss_pred CC--CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceE-EEeeCCeEEEECCHH
Confidence 67 899999999999999999988888887654443 8874 788999999 999999999998764
No 246
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.62 E-value=8.2e-17 Score=145.06 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=118.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---cceeeeCCcchHHH-----h-----
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL-----C----- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~---~G~i~~~g~~~~~l-----~----- 77 (263)
..+...++.+|.+|+++||+|+||||||||+++|+|+. .|. +|.|.++|+++..+ .
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~-----------~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~ 97 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-----------AANGRIGGSATFNGREILNLPEKELNKLRAE 97 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-----------CCCCCCCeEEEECCEECCcCCHHHHHHHhcC
Confidence 45788999999999999999999999999999999995 554 89999999865321 0
Q ss_pred -hhcCCCC---CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcce--eEEeeccCCCceeeecc---------
Q 024748 78 -QLFKPKS---AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGI--FHVLRAFEDPDIIHVDD--------- 139 (263)
Q Consensus 78 -~~~~~~~---~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~--l~vv~~~~~~~~~~l~~--------- 139 (263)
..|.+|. .+...+++.+++......+. .......+.+.++.+..- ...++.+ ...+++
T Consensus 98 ~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~----p~~LSgG~~QRv~IA 173 (330)
T PRK09473 98 QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY----PHEFSGGMRQRVMIA 173 (330)
T ss_pred CEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC----cccCCHHHHHHHHHH
Confidence 1133333 33445666554432111111 011112223333333210 0001111 112332
Q ss_pred ---cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ---~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+.+| +++++|||+..+|+......++.+.++... +.+ |++..+.++||++ .+|..|+++..|+.
T Consensus 174 rAL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri-~vm~~G~ive~g~~ 246 (330)
T PRK09473 174 MALLCRP--KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV-LVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 5678 899999999999999999888888877643 333 9999999999999 99999999887753
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.62 E-value=1.2e-16 Score=138.59 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=115.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--------hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--------~~~~~ 82 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+.. .+|+.|.|.++|..+.... ..|.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 90 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESILDLEPEERAHLGIFLAF 90 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEcccCChhhhheeeEEEEe
Confidence 357888999999999999999999999999999999720 2688999999987653211 11333
Q ss_pred CC-CCCcceehhhhhccccCccc-----c--c--chHHHHHHHHhhhcceeEEeeccCCCcee-eecc------------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE-----G--Q--GLGNSFLSHIRAVDGIFHVLRAFEDPDII-HVDD------------ 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~-----~--~--~~~~~~~~~~~~~d~~l~vv~~~~~~~~~-~l~~------------ 139 (263)
+. ..+..+++.++..+...... . . .....+.+.++.++.- ..+.+.... .+++
T Consensus 91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD----PSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc----hhhhccccccCCCHHHHHHHHHHHHH
Confidence 33 22334455555433211100 0 0 0111122222222210 000011111 1332
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHH-HHHHHHHhhcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l-~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|....+...+.+.+....+.+ |+...+..+ ||++ .+|++|+++..++.
T Consensus 167 ~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i-~~l~~G~i~~~~~~ 236 (252)
T CHL00131 167 LLDS--ELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYV-HVMQNGKIIKTGDA 236 (252)
T ss_pred HcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEE-EEEeCCEEEEecCh
Confidence 4678 899999999999999999988888877544433 999998887 8999 88999999887654
No 248
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.62 E-value=2.2e-16 Score=149.82 Aligned_cols=176 Identities=14% Similarity=0.048 Sum_probs=118.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ccceeeeCCcchHH------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-~~G~i~~~g~~~~~------l~--~~~~ 81 (263)
......++.++.+|+++||+|+||||||||+++|+|+. +| ++|.|.++|+.+.. +. ..|.
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-----------~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-----------PGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-----------CCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 35678899999999999999999999999999999994 64 79999998865421 11 1244
Q ss_pred CCC----CCCcceehhhhhccccC--ccc----c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----------
Q 024748 82 PKS----AVPAFLEIHDIAGLVRG--AHE----G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------- 139 (263)
Q Consensus 82 ~~~----~~~~~l~~~d~~g~~~~--~~~----~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------- 139 (263)
+|. .++..+++.++..+... ... . ......+.+.++..+. -....+..+..+++
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV----KTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc----cCCCccCccccCCHHHHHHHHHHHH
Confidence 544 24556788887765321 100 0 0001122223333321 00011111223333
Q ss_pred -cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 140 -~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
..+| +++++|||+...|+...+...+.+.++...+.+ |+...+.++||++ .+|.+|+++...
T Consensus 418 l~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v-~~l~~G~i~~~~ 485 (500)
T TIGR02633 418 LLTNP--RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRV-LVIGEGKLKGDF 485 (500)
T ss_pred HhhCC--CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEE
Confidence 4578 899999999999999998888888777654433 9999999999999 899999987654
No 249
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.62 E-value=7.1e-17 Score=156.89 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=119.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch-----------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF----------------- 73 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~----------------- 73 (263)
.++...++.++.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 97 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-----------EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQ 97 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-----------CCCCeEEEECCEEeccccccccccccCCHHH
Confidence 46788999999999999999999999999999999994 78899998876422
Q ss_pred -HHHh---hhcCCCC---CCCcceehhhhhccccCcccc---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc----
Q 024748 74 -EWLC---QLFKPKS---AVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---- 139 (263)
Q Consensus 74 -~~l~---~~~~~~~---~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---- 139 (263)
..+. ..|.+|. .+...+++.+++.+....+.+ .....++.+.++.++.- . ....-+..+..+++
T Consensus 98 ~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~-~~~~~~~~~~~LSgGq~Q 175 (623)
T PRK10261 98 MRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-E-AQTILSRYPHQLSGGMRQ 175 (623)
T ss_pred HHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-C-hhhHHhCCCccCCHHHHH
Confidence 0110 1133333 234457888887654221100 01112222233333210 0 00000111122332
Q ss_pred --------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 140 --------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 140 --------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
..+| +++++|||+...|+......++.+.++... +.+ |++..+..+||++ .+|++|+++..|+
T Consensus 176 Rv~iA~AL~~~P--~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri-~vl~~G~i~~~g~ 252 (623)
T PRK10261 176 RVMIAMALSCRP--AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV-LVMYQGEAVETGS 252 (623)
T ss_pred HHHHHHHHhCCC--CEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEeeCCeecccCC
Confidence 5678 899999999999999999988888877543 433 9999999999999 9999999887665
Q ss_pred C
Q 024748 206 W 206 (263)
Q Consensus 206 ~ 206 (263)
.
T Consensus 253 ~ 253 (623)
T PRK10261 253 V 253 (623)
T ss_pred H
Confidence 3
No 250
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.62 E-value=1.6e-16 Score=151.48 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=115.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC---------------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--------------------- 69 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~--------------------- 69 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+.. ..|+.|.|.++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---------~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~ 83 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ---------YEPTSGRIIYHVALCEKCGYVERPSKVGEPCP 83 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc---------CCCCceEEEEeccccccccccccccccccccc
Confidence 357788999999999999999999999999999999830 04788988875
Q ss_pred --Ccch---------------HHHh--hhcCCCC--CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEe
Q 024748 70 --DERF---------------EWLC--QLFKPKS--AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVL 126 (263)
Q Consensus 70 --g~~~---------------~~l~--~~~~~~~--~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv 126 (263)
|..+ .... ..|.+|. ..+..+++.+++.+...... ......++.+.+..++.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl----- 158 (520)
T TIGR03269 84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL----- 158 (520)
T ss_pred cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----
Confidence 2111 0000 1133332 23345677777765321111 01111122222333221
Q ss_pred eccCCCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHH
Q 024748 127 RAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELC 188 (263)
Q Consensus 127 ~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~ 188 (263)
..+.+..+..+++ +.+| +++++|||+...|+...+...+.+.+.... +.+ |+...+..+|
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 236 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEP--FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCC--CEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 0011111222332 4678 899999999999999999988888877533 333 9999999999
Q ss_pred HHHHHHhhcCCccccCCC
Q 024748 189 QRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 189 d~i~~~L~~G~~~~~g~~ 206 (263)
|++ .+|++|+++..|+.
T Consensus 237 d~i-~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 237 DKA-IWLENGEIKEEGTP 253 (520)
T ss_pred CEE-EEEeCCEEeeecCH
Confidence 999 89999998776654
No 251
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.62 E-value=1.1e-16 Score=169.26 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=125.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hhh--hcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~~--~~~~~~ 84 (263)
.++...++.++.+|+++||+|+||||||||+++|+|+. .|++|.|.++|.++.. ... .|.||.
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-----------~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~ 1011 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-----------PPTSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-----------CCCceEEEECCEECcchHHHHhhcEEEEecC
Confidence 45778899999999999999999999999999999994 8999999999976532 111 255555
Q ss_pred -CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|+..+....+.. .....++.+.++..+. ....+..+..+++ ..+| ++++
T Consensus 1012 ~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL-----~~~~~~~~~~LSGGqKQRLsLArALi~~P--kVLL 1084 (2272)
T TIGR01257 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGL-----HHKRNEEAQDLSGGMQRKLSVAIAFVGDA--KVVV 1084 (2272)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 455678999998775432211 1111222223333321 0011111122232 4567 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+.+.|+...+..++.+.+.. .+.+ |+++.++.+|||+ .+|.+|+++..|+.
T Consensus 1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI-~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRI-AIISQGRLYCSGTP 1144 (2272)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 999999999999999999888874 3433 9999999999999 99999999887754
No 252
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.5e-17 Score=145.11 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=118.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h------hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C------QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~------~~ 79 (263)
..+...++.+|.+|+++||+|+||||||||+++|+|+..+. ..++.|.|.++|+++..+ . ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~ 92 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVA 92 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEE
Confidence 35788999999999999999999999999999999995100 125789999999765321 1 12
Q ss_pred cCCCC---CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcce--eEEeeccCCCceeeecc------------
Q 024748 80 FKPKS---AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGI--FHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 80 ~~~~~---~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~--l~vv~~~~~~~~~~l~~------------ 139 (263)
|.+|. .+...+++.+++......+. .......+.+.++.++.- ..+++.+ ...+++
T Consensus 93 ~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~----p~~LSgGq~QRv~iArAL 168 (326)
T PRK11022 93 MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY----PHQLSGGMSQRVMIAMAI 168 (326)
T ss_pred EEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC----chhCCHHHHHHHHHHHHH
Confidence 33443 23444555443322111110 111112233333333220 0011111 112232
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+.+| +++++|||+...|+......++.+.++... +. +|++..+.++||++ .+|..|+++..|+.
T Consensus 169 ~~~P--~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri-~vm~~G~ive~g~~ 238 (326)
T PRK11022 169 ACRP--KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI-IVMYAGQVVETGKA 238 (326)
T ss_pred HhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 5678 899999999999999999988888887643 33 39999999999999 99999999877653
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.7e-16 Score=128.77 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=98.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (263)
.....++.++++|++++|+|+||||||||+++|+|+. +|..|.|.++|+.+.... ..|.++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~ 84 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-----------DPTSGEILIDGVDLRDLDLESLRKNIAYVPQD 84 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-----------CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC
Confidence 5678899999999999999999999999999999994 889999999997654311 1133333
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k 164 (263)
......++.|+. .+ .+++ +.+. +.+++ ..+| +++++|||+...|+....+
T Consensus 85 ~~~~~~t~~e~l-----LS----~G~~-----~rl~----la~al----------~~~p--~llllDEP~~gLD~~~~~~ 134 (171)
T cd03228 85 PFLFSGTIRENI-----LS----GGQR-----QRIA----IARAL----------LRDP--PILILDEATSALDPETEAL 134 (171)
T ss_pred chhccchHHHHh-----hC----HHHH-----HHHH----HHHHH----------hcCC--CEEEEECCCcCCCHHHHHH
Confidence 111123555554 11 1111 1110 01110 2357 7889999999999999888
Q ss_pred HHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcC
Q 024748 165 RIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 165 ~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G 198 (263)
..+.+.+... +. +|+.+.+.. ||++ ..|.+|
T Consensus 135 l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~~-~~l~~g 170 (171)
T cd03228 135 ILEALRALAK-GKTVIVIAHRLSTIRD-ADRI-IVLDDG 170 (171)
T ss_pred HHHHHHHhcC-CCEEEEEecCHHHHHh-CCEE-EEEcCC
Confidence 8888877643 33 299999877 9988 777665
No 254
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.61 E-value=3.3e-16 Score=130.29 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=95.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------HHh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------~l~--~~~~ 81 (263)
......+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+++. ... ..|.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 73 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-----------RPQSGAVLIDGEPLDYSRKGLLERRQRVGLV 73 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceeEEECCEEccccccchHHHHhhEEEE
Confidence 45788999999999999999999999999999999994 899999999987652 111 1244
Q ss_pred CCCC--CCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~--~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++.. .....++.|+..+...... .......+.+.++..+. ..+.+.....+++ ..+|
T Consensus 74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LS~G~~qrv~laral~~~p-- 146 (190)
T TIGR01166 74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA-----SGLRERPTHCLSGGEKKRVAIAGAVAMRP-- 146 (190)
T ss_pred ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-----hhhhhCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 5442 2224688887765422111 01111122222222221 0011111112222 4677
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRS 176 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~ 176 (263)
++.++|||+...|+...+...+.+.+....+
T Consensus 147 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 177 (190)
T TIGR01166 147 DVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177 (190)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999888888887765433
No 255
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.7e-16 Score=138.59 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=116.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchHH-------Hh--
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC-- 77 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~~-------l~-- 77 (263)
.....++.++++|+++||+|+||||||||+++|+|+. +| ..|.|.++|+++.. +.
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-----------~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-----------ELESEVRVEGRVEFFNQNIYERRVNLNRLRRQ 89 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-----------CCCCCccccceEEECCEEhhccccchHHhhcc
Confidence 4678899999999999999999999999999999995 44 47899998876521 11
Q ss_pred hhcCCCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 QLFKPKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 ~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.++. .++ ..++.|+..+...... . ......+.+.++.++.. ..+....+.....+++ ..
T Consensus 90 i~~~~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 90 VSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLW-DEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred EEEEecCCccC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-chhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1244444 233 3688887765321111 0 00011122222233210 0000000111112222 45
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhc-----CCccccCCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQD-----GKDVRLGDWK 207 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~-----G~~~~~g~~~ 207 (263)
+| +++++|||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|++ |+++..++..
T Consensus 168 ~p--~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 168 KP--KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFT-AFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEE-EEEccCCCcCceEEEeCCHH
Confidence 67 899999999999999999888888876432 333 9999999999999 99998 9888776543
No 256
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-16 Score=138.03 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=117.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH------HHh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------WLC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~------~l~--~~~~~ 82 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+..+.. -.|+.|.|.++|.++. ... ..|.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 89 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIE------GVKITGKLTMDGEDIYGNIDVADLRIKVGMVF 89 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEEcccccchHHHHhheeEEe
Confidence 467889999999999999999999999999999999941000 0146899999886552 111 12555
Q ss_pred CCCCCcceehhhhhccccCccc-c--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHE-G--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~-~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
+.......++.|+..+...... . ......+.+.++.++.. .-+...-+.....+++ ..+| ++
T Consensus 90 q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~LS~G~~qrv~laral~~~p--~l 166 (249)
T PRK14253 90 QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEP--DV 166 (249)
T ss_pred cCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-hhhhHHhhcCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 5522223688887765422111 0 01111222222222210 0000000011111221 4567 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++|||+...|+.......+.+.+... +.+ |+...+..+||++ .+|.+|+++..++
T Consensus 167 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (249)
T PRK14253 167 ILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRT-AFFLMGELVEHDD 227 (249)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999999998888888887653 333 9999999999999 9999999887765
No 257
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.6e-16 Score=139.71 Aligned_cols=186 Identities=14% Similarity=0.064 Sum_probs=116.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++.+.+|++++|+|+||||||||+++|+|+..... ..|..|.|.++|+.+.. .. ..|.
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v 106 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIP------GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccccccc------CCCcCceEEECCEecccccchhHHHhhcEEEE
Confidence 356788999999999999999999999999999999841000 00368999999876521 11 1245
Q ss_pred CCCCCCcceehhhhhccccCcccc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
++.......++.|+..+....... ......+...++.+.....+-+.. +.....+++ ..+| +++
T Consensus 107 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p--~ll 183 (274)
T PRK14265 107 FQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKP--DVL 183 (274)
T ss_pred ccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCC--CEE
Confidence 554222224778877654221110 001111122222222100000000 111111221 4678 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhh---------cCCccccCCCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ---------DGKDVRLGDWK 207 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~---------~G~~~~~g~~~ 207 (263)
++|||+...|+...+...+.+.+... +.+ |+...+.++||++ .+|+ +|+++..++..
T Consensus 184 lLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 184 LMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWT-AFFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEecccccccccCceEEEeCCHH
Confidence 99999999999999998888887753 332 9999999999999 8886 78888776643
No 258
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-16 Score=138.44 Aligned_cols=184 Identities=11% Similarity=0.040 Sum_probs=118.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------h--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~--~~~~ 81 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+.... ...++.|.|.++|+++... . ..|.
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 92 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLI------PGCRITGDILYNGENIMDSGADVVALRRKIGMV 92 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCC------CCCCcceEEEECCEEccccccchhhhhceEEEE
Confidence 46788899999999999999999999999999999984100 0012489999998765321 1 1244
Q ss_pred CCCC-CCcceehhhhhccccCcccc--c-chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKSA-VPAFLEIHDIAGLVRGAHEG--Q-GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~~-~~~~l~~~d~~g~~~~~~~~--~-~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++.. ++. .++.|++.+....... . .....+.+.++.++..-.+.... +.....+++ ..+|
T Consensus 93 ~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p-- 168 (253)
T PRK14261 93 FQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNP-- 168 (253)
T ss_pred ecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCC--
Confidence 5542 232 4888887765322111 0 11112222223222100000000 011111221 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+... +.+ |+...+.++||++ .+|++|+++..++.
T Consensus 169 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v-~~l~~G~i~~~g~~ 232 (253)
T PRK14261 169 EVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYT-GFMYLGKLIEFDKT 232 (253)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEE-EEEECCEEEEcCCH
Confidence 89999999999999999888888877653 233 9999999999999 89999998877654
No 259
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.61 E-value=2.1e-16 Score=134.86 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=109.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. +|+.|.|.++|+.+... . ..|.++
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 95 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-----------QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQ 95 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCcEEEECCCchHHcCHHHHHhhEEEEec
Confidence 35789999999999999999999999999999999994 89999999999765421 1 124444
Q ss_pred CCCCcceehhhhhccccCcccccchHHH-----HHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNS-----FLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~-----~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
.......++.|+..+............. +.+.+......+ ...-+.....+++ ..+| +
T Consensus 96 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl---~~~~~~~~~~LSgG~~qrv~laral~~~p--~ 170 (226)
T cd03248 96 EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGY---DTEVGEKGSQLSGGQKQRVAIARALIRNP--Q 170 (226)
T ss_pred ccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccc---cchhhcCCCcCCHHHHHHHHHHHHHhcCC--C
Confidence 4222235777777654321110000000 001111110000 0000111112222 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~ 199 (263)
++++|||+...|+...+...+.+.+... +. +|+...+.. ||++ .+|.+|+
T Consensus 171 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i-~~l~~g~ 225 (226)
T cd03248 171 VLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQI-LVLDGGR 225 (226)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEE-EEecCCc
Confidence 9999999999999999988888877653 23 299998864 9998 7787775
No 260
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.1e-16 Score=139.11 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=117.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------hhhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~~~~~~ 82 (263)
.+....+++++++|+++||+|+||||||||+++|+|+..+.+ -.|+.|.|.++|..+... ...|.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 107 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVS------GYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLF 107 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCC------CCCCceEEEECCEEccccchhHHHhhheEEec
Confidence 456778899999999999999999999999999999951000 014799999998765211 112555
Q ss_pred CCCCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
+.......++.++..+...... .......+.+.++..+.. ..+...-+.....+++ ..+| ++
T Consensus 108 q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p--~l 184 (276)
T PRK14271 108 QRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-DAVKDRLSDSPFRLSGGQQQLLCLARTLAVNP--EV 184 (276)
T ss_pred cCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-chhhhHhhCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 5522223688887765422111 111111122222333210 0000000011111222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|....+...+.+.+... ..+ |+...+.++|+++ .+|.+|+++..++.
T Consensus 185 llLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri-~~l~~G~i~~~g~~ 246 (276)
T PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRA-ALFFDGRLVEEGPT 246 (276)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 999999999999998888888877653 232 9999999999999 99999998877653
No 261
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=5.7e-16 Score=130.36 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=103.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh------hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~------~~~~~~~ 84 (263)
.+....+++++++|+++||+|+||||||||+++|+|.. +|+.|.|.++|..+.... ..|.++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~ 82 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-----------RPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQ 82 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEEcccchHHhhhheEEeCCc
Confidence 35678899999999999999999999999999999994 899999999987653211 1234443
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++..+++.|+..+....+.. .....+.+.++..+.- .+.+.....+++ ..+| +++++|
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~-----~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllD 154 (204)
T PRK13538 83 PGIKTELTALENLRFYQRLHGP-GDDEALWEALAQVGLA-----GFEDVPVRQLSAGQQRRVALARLWLTRA--PLWILD 154 (204)
T ss_pred cccCcCCcHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCH-----HHhhCChhhcCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 344567888887665322211 1111222223332210 111111112222 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHH
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHE 186 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~ 186 (263)
||+...|+...+...+.+.+....+.+ |+...+..
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 999999999998888877776543333 88777655
No 262
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.61 E-value=4e-16 Score=152.14 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=128.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+-...++.+|++|+++||+|+||||||||+|+|+|++ .|..|.|.++|.++..+.. .|.+|
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-----------~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-----------KPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 35788899999999999999999999999999999996 8999999999998865332 27888
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCCc---eeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDPD---IIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~~---~~~l~~------------~~~P~~ 145 (263)
..+.+.=++.|+..+..+.... +++.++.+.+.+ +..+=..++..- -..+++ ..+|
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P-- 628 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP-- 628 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC--
Confidence 8766678999999888765432 233333333322 111111111000 001222 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.++++||+++..|...-+...+.+.+.. .+.| |....+ +.||+| .+|++|+++..|+-+
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti-~~adrI-iVl~~Gkiv~~gs~~ 692 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTI-RSADRI-IVLDQGKIVEQGSHE 692 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHh-hhccEE-EEccCCceeccCCHH
Confidence 8999999999999998777777777765 3333 777665 889999 999999999998643
No 263
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=2.3e-16 Score=136.60 Aligned_cols=158 Identities=15% Similarity=0.214 Sum_probs=102.3
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcceehh
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIH 93 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~l~~~ 93 (263)
....+.+.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|.++ .|.++. ......++.
T Consensus 16 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-----------~p~~G~i~~~g~~i-----~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 16 EVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-----------KPDEGDIEIELDTV-----SYKPQYIKADYEGTVR 79 (246)
T ss_pred EEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-----------cCCCCeEEECCceE-----EEecccccCCCCCCHH
Confidence 3345566789999999999999999999999994 89999999988532 234444 223456777
Q ss_pred hhhccccCcccc-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHH
Q 024748 94 DIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 94 d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~ 160 (263)
|++.+....... ......+++ ..+. ....+..+..+++ +.+| +++++|||+...|+.
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~---~l~l-----~~~~~~~~~~LSgGe~qrv~iaraL~~~p--~llllDEPt~~LD~~ 149 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAK---PLQI-----EQILDREVPELSGGELQRVAIAACLSKDA--DIYLLDEPSAYLDVE 149 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHH---HcCC-----HHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHH
Confidence 776432211100 011111222 1111 0000111111222 4667 899999999999999
Q ss_pred HHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCC
Q 024748 161 FMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~ 199 (263)
......+.+.+.... +. +|+...+..+||++ .+|+.+.
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i-~~l~~~~ 193 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRL-IVFEGEP 193 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEcCCC
Confidence 998888888877542 33 39999999999999 7776443
No 264
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.8e-16 Score=137.46 Aligned_cols=184 Identities=13% Similarity=0.046 Sum_probs=117.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------h--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------~--~~~~ 81 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+.... ...|+.|.|.++|+.+... . ..|.
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 91 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFV------PNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccC------CCCCcceEEEECCEehHhcccchHHHhhhEEEE
Confidence 45778899999999999999999999999999999994100 0015799999998765321 1 1245
Q ss_pred CCC-CCCcceehhhhhccccCcccc----cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHEG----QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~~----~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
++. .++. .++.++..+....... ......+.+.++..+.. ..+...-+.....+++ ..+|
T Consensus 92 ~q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p- 168 (251)
T PRK14244 92 FQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLW-EELGDRLKDSAFELSGGQQQRLCIARAIAVKP- 168 (251)
T ss_pred ecCccccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCC-chhhhHhhcChhhCCHHHHHHHHHHHHHhcCC-
Confidence 554 2222 3777776554211110 01111222233333210 0000000001111221 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+...+.++||++ .+|++|+++..++.
T Consensus 169 -~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 232 (251)
T PRK14244 169 -TMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRV-AFFQSGRIVEYNTT 232 (251)
T ss_pred -CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEE-EEEECCEEEEeCCH
Confidence 8999999999999999888888887764 3433 9999999999999 99999998876653
No 265
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.60 E-value=5.9e-16 Score=155.44 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=129.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hhh--hcCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS 84 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~~--~~~~~~ 84 (263)
|.+.++..|++|++.|++|+|||||||+|++|+|.. .|+.|.+.+.|..+.. ... .|-||.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-----------~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-----------KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-----------cCCcceEEEecCccccccchhhhhhhcccCCch
Confidence 889999999999999999999999999999999994 8999999998876643 111 266776
Q ss_pred -CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcce---eEEeeccC--CCcee--eecccCCCchhHHHHHHHh
Q 024748 85 -AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGI---FHVLRAFE--DPDII--HVDDSVDPVRDLEVISAEL 154 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~---l~vv~~~~--~~~~~--~l~~~~~P~~~i~ilde~~ 154 (263)
.+...+|..|+..+....++ .......+...++..+.. -.-+..+. +.+.+ .++-..+| .+.++|||+
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p--~vi~LDEPs 726 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP--SVILLDEPS 726 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC--CEEEecCCC
Confidence 55567899998887765443 112222222222222211 11112121 11111 12224568 799999999
Q ss_pred hhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 155 RLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+.||..+...|+.+.+.++.++ +|+|++.|.+|+|+ ++|-.|+..+-|+..
T Consensus 727 tGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~-aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT-AIMVIGQLRCIGSPQ 783 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhh-heeecCeeEEecChH
Confidence 99999999999999988876442 39999999999999 999999998888654
No 266
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.60 E-value=1.5e-16 Score=138.08 Aligned_cols=177 Identities=18% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc-----hHHH---------h
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL---------C 77 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~-----~~~l---------~ 77 (263)
.....++.++++|++++|+|+||||||||+++|+|+. +|+.|.|.++|+. +... .
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-----------APDHGTATYIMRSGAELELYQLSEAERRRLMR 85 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEEecccccccccccCCHHHHHHhhh
Confidence 4578899999999999999999999999999999994 8999999998765 3210 0
Q ss_pred --hhcCCCCC---CCcceehhhhhcccc---CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 78 --QLFKPKSA---VPAFLEIHDIAGLVR---GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 78 --~~~~~~~~---~~~~l~~~d~~g~~~---~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
..|.++.. +...+++.++..... ...........+.+.++..+.- ....+..+..+++
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID----PTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC----hhhhhcCchhcCHHHHHHHHHHH
Confidence 12333331 222344444443210 0000000111112222222110 0000111112222
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+...+.+.+.... +.+ |+...+..+|+++ .+|.+|+++..++.
T Consensus 162 al~~~p--~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~-~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 162 NLVTRP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL-LVMQQGRVVESGLT 233 (253)
T ss_pred HHhcCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEECCH
Confidence 4677 899999999999999999988888776543 333 9999999999999 88999998876643
No 267
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.60 E-value=2.6e-16 Score=150.08 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=118.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC-Ccc---hH--------HHh-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DER---FE--------WLC- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~-g~~---~~--------~l~- 77 (263)
.+....++..+.+|+++||+|+||||||||+++|+|+. +|+.|.|.++ |.. +. ...
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 365 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-----------EPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR 365 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEEecCCccccccccchhhHHHHhh
Confidence 35678899999999999999999999999999999994 7899999995 421 11 111
Q ss_pred -hhcCCCC-CCCcceehhhhhccccCcccccc-hHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 78 -QLFKPKS-AVPAFLEIHDIAGLVRGAHEGQG-LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 78 -~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
..|.+|. .++..+++.|+..+......... ....+.+.++.++.--.....+.+..+..+++ ..+
T Consensus 366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 366 YIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred hEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1244554 34456788888764321110000 11122222333221000000000111112222 457
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
| +++++|||+...|+...+...+.+.+.... +.+ |+...+.++||++ .+|.+|+++..++.
T Consensus 446 p--~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 446 P--RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRA-ALMRDGKIVKIGDP 512 (520)
T ss_pred C--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 8 899999999999999999988888776543 333 9999999999999 89999998776643
No 268
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.7e-16 Score=137.54 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=119.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+.... ...|++|.|.++|.++.. .. ..|.
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~ 89 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLI------PGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMV 89 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccC------CCCCCccEEEECCEEcccccccHHHHhhheEEE
Confidence 45788899999999999999999999999999999983100 001478999999976531 11 1255
Q ss_pred CCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++ ..++.|+..+....+. . ......+.+.++.++..-. +...-+.....+++ ..+|
T Consensus 90 ~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~~~~~LS~Gq~qrv~laral~~~p-- 165 (250)
T PRK14266 90 FQKPNPF-PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDE-VKDKLDKSALGLSGGQQQRLCIARTIAVSP-- 165 (250)
T ss_pred ecCCccC-cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchh-HHHHHhCCcccCCHHHHHHHHHHHHHHcCC--
Confidence 555 233 3477777755322111 1 1111223333333332100 00000111112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.. .+.+ |+...+..+|+++ .+|.+|+++..++.+
T Consensus 166 ~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i-~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 166 EVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYT-SFFLNGEIIESGLTD 230 (250)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEE-EEEECCeEEEeCCHH
Confidence 8999999999999999888888887764 3333 9999999999998 888999998776543
No 269
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.9e-16 Score=136.27 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=116.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---ccceeeeCCcchHH-------Hh--h
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------LC--Q 78 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p---~~G~i~~~g~~~~~-------l~--~ 78 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+... .| +.|.|.++|+.+.. .. .
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 88 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL---------IPGVTITGNVSLRGQNIYAPNEDVVQLRKQV 88 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---------CCCCCcccEEEEcCEEcccccccHHHhcCeE
Confidence 4578889999999999999999999999999999998410 13 58999999876521 11 1
Q ss_pred hcCCCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCC
Q 024748 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVD 142 (263)
Q Consensus 79 ~~~~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~ 142 (263)
.|.++. .++. .++.+++.+...... .......+.+.++.++.... +....+.....+++ ..+
T Consensus 89 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-i~~~~~~~~~~LS~Gq~qrv~laral~~~ 166 (252)
T PRK14255 89 GMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-VKDHLHESALSLSGGQQQRVCIARVLAVK 166 (252)
T ss_pred EEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-hhhHHhcCcccCCHHHHHHHHHHHHHhcC
Confidence 244554 2232 577777765321111 00111122222333322100 11000111112222 467
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
| +++++|||+...|+...+...+.+.+...... +|+.+.+.++||++ .+|++|+++..++
T Consensus 167 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14255 167 P--DVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKT-AFFLTGNLIEFAD 230 (252)
T ss_pred C--CEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 8 89999999999999998888888877653211 29999999999999 9999999877654
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=1.4e-16 Score=152.19 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=116.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchHHH--------h
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEWL--------C 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~~l--------~ 77 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +| ++|.|.++|+++... .
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 90 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----------PSPPVVYPSGDIRFHGESLLHASEQTLRGVR 90 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCcCCccceEEEECCEecccCCHHHHHHHh
Confidence 46889999999999999999999999999999999995 43 789999998765221 1
Q ss_pred ---hhcCCCCC---CCcceehhhhhccccCcc---cccchHHHHHHHHhhhcceeEEeeccCCCceeeecc---------
Q 024748 78 ---QLFKPKSA---VPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD--------- 139 (263)
Q Consensus 78 ---~~~~~~~~---~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~--------- 139 (263)
..|.+|.. +...+++.+++.+..... .......++.+.++.++.- .... ..+..+..+++
T Consensus 91 ~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~-~~~~~~~~LSgGe~qrv~iA 168 (529)
T PRK15134 91 GNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIR-QAAK-RLTDYPHQLSGGERQRVMIA 168 (529)
T ss_pred cCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-ChHH-HHhhCCcccCHHHHHHHHHH
Confidence 12444432 233355555543221100 0111112222333333210 0000 00111122332
Q ss_pred ---cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 140 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 140 ---~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
..+| +++++|||+...|+.......+.+.++... +.+ |+.+.+..+||++ .+|++|+++..+.
T Consensus 169 raL~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri-~~l~~G~i~~~g~ 240 (529)
T PRK15134 169 MALLTRP--ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV-AVMQNGRCVEQNR 240 (529)
T ss_pred HHHhcCC--CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 5678 899999999999999999988888876543 333 9999999999999 9999999877654
No 271
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=3.5e-16 Score=150.99 Aligned_cols=178 Identities=17% Similarity=0.194 Sum_probs=123.6
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (263)
+.+....++.++++|++++|+|+||||||||+++|+|++ +|+.|.|.++|.++..+.. .|.|
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-----------~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-----------DIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-----------CCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 356788999999999999999999999999999999995 8999999999988754321 3778
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc--e----eeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD--I----IHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~--~----~~l~~------------~~~P 143 (263)
|+.....-++.|+..+....... ...+.+.++.+.+- ..+..+.+ .+ + ..+++ ..+|
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~---~~~i~~al~~~~l~-~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYS---REQIEEAARMAYAM-DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCC---HHHHHHHHHHhCcH-HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 88655578999999886532111 12222233322210 00111100 00 0 11222 3567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|.+...+..+.+.+... +. +|....+ +.||+| .+|++|+++..|+.+
T Consensus 500 --~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~~~-~~~D~I-i~l~~g~i~e~g~~~ 563 (582)
T PRK11176 500 --PILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTI-EKADEI-LVVEDGEIVERGTHA 563 (582)
T ss_pred --CEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHH-HhCCEE-EEEECCEEEEeCCHH
Confidence 89999999999999988887777776532 22 3988765 569999 999999998877643
No 272
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.60 E-value=3.7e-16 Score=137.36 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=115.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+....+++.|++|+++||+|+||||||||+++|+|+. + ..|.|.++|..+..+. ..|.|+
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-----------~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q 84 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-----------N-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ 84 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-----------C-CCcEEEECCEEhhhCCHHHHhhhEEEECC
Confidence 45789999999999999999999999999999999994 4 6899999998764321 125566
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc-CCCc------eeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPD------IIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~-~~~~------~~~l~~------------~~~P~ 144 (263)
.......++.++........ ...+.+.++.++.- ..++.+ ...+ ...+++ ..+|
T Consensus 85 ~~~lf~~tv~~nl~~~~~~~-----~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p- 157 (275)
T cd03289 85 KVFIFSGTFRKNLDPYGKWS-----DEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA- 157 (275)
T ss_pred CcccchhhHHHHhhhccCCC-----HHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC-
Confidence 53322357778774321111 12222333332211 011111 0000 001111 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.. .+.+ |+.+.+. .||++ .+|++|+++..|+..
T Consensus 158 -~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~-~~dri-~vl~~G~i~~~g~~~ 221 (275)
T cd03289 158 -KILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAML-ECQRF-LVIEENKVRQYDSIQ 221 (275)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHH-hCCEE-EEecCCeEeecCCHH
Confidence 8999999999999998888777777654 3333 9998876 49999 999999998887643
No 273
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.60 E-value=3.8e-16 Score=135.08 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h---hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~---~~~~~ 82 (263)
.+....+++++++|++++|+|+||||||||+++|+|+.. .+|++|.|.++|..+... . ..|.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---------CCCCceEEEECCCccccCCHHHHhhcceEEEe
Confidence 457888999999999999999999999999999999830 158999999998765321 1 11333
Q ss_pred CC-CCCcceehhhhhccccC----ccccc-----chHHHHHHHHhhhcceeEEeeccCCCcee-eecc------------
Q 024748 83 KS-AVPAFLEIHDIAGLVRG----AHEGQ-----GLGNSFLSHIRAVDGIFHVLRAFEDPDII-HVDD------------ 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~----~~~~~-----~~~~~~~~~~~~~d~~l~vv~~~~~~~~~-~l~~------------ 139 (263)
+. ..+..++......+... ..... .....+.+.++..+. -..+.+.... .+++
T Consensus 85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM----PEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC----ChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 33 11222222222211100 00000 011111111221111 0000000010 1222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHH-HHHHHHHhhcCCccccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l-~d~i~~~L~~G~~~~~g~~~ 207 (263)
..+| +++++|||+...|+...+...+.+.++...+.+ |+...+..+ |+++ .+|.+|+++..++.+
T Consensus 161 ~~~p--~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i-~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 161 VLEP--ELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 231 (248)
T ss_pred HcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEE-EEEECCeEEEeCCHH
Confidence 4678 899999999999999988888877776544433 999998887 7988 889999988777543
No 274
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.60 E-value=7.7e-16 Score=131.26 Aligned_cols=164 Identities=10% Similarity=0.064 Sum_probs=106.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC--Cc--chHH--------H--
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--DE--RFEW--------L-- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~--g~--~~~~--------l-- 76 (263)
.+....+++++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++ |. .+.. .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~ 89 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-----------LPDSGRILVRHEGAWVDLAQASPREVLEVRR 89 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCeEEEecCCCccchhhcCHHHHHHHHh
Confidence 46788999999999999999999999999999999994 8999999997 42 3211 1
Q ss_pred -hhhcCCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 77 -CQLFKPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 77 -~~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
...|.++. .++..+++.|++.+...... .......+.+.++..+.--... +..+..+++ .
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LS~G~~qrl~laral~ 165 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----HLPPATFSGGEQQRVNIARGFI 165 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----hCCcccCCHHHHHHHHHHHHHh
Confidence 11244444 34456777777654211111 0111122222233322100000 111111221 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
.+| +++++|||+...|+...+...+.+.+....+.+ |+...+..+||++
T Consensus 166 ~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 166 ADY--PILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred cCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhccee
Confidence 567 899999999999999999988888877544443 9999999999987
No 275
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.60 E-value=2.6e-16 Score=154.66 Aligned_cols=177 Identities=14% Similarity=0.041 Sum_probs=123.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~ 82 (263)
+.+....++.++++|+++||+|+||||||||+|+|+|++ +|++|.|.++|.++..+. . .|.|
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-----------TPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 356888999999999999999999999999999999995 899999999998775422 1 2777
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCc
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPV 144 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~ 144 (263)
|......-++.|++.+... .. ..++.+.++.+.. +..+-+.++.. .-..+++ ..+|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p- 607 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAP-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP- 607 (686)
T ss_pred cCCccCcccHHHHHhcCCC-CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC-
Confidence 7755556789999988755 21 1233333443321 11111111100 0011222 3567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKR--SNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~--~~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|...-++..+.+.+.... -.+|..+.+. .||+| .+|++|+++..|+.
T Consensus 608 -~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~I-ivl~~G~iv~~G~~ 668 (686)
T TIGR03797 608 -RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRI-YVLDAGRVVQQGTY 668 (686)
T ss_pred -CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEE-EEEECCEEEEECCH
Confidence 899999999999999877777777654210 1139988774 59999 99999999988864
No 276
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.4e-16 Score=139.39 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=115.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....+++.|.+|++++|+|+||||||||+++|+|+.... ...|+.|.|.++|..+.. .. ..|.
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v 125 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI------DAARVEGELTFRGKNVYDADVDPVALRRRIGMV 125 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcc------cCCCCceEEEECCEEccccccchHhhhccEEEE
Confidence 35677889999999999999999999999999999995100 001689999999876531 11 1244
Q ss_pred CCC-CCCcceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
++. .++. .++.|+..+...... ......++.+.++..+.--. +...-+.....+++ ..+| ++
T Consensus 126 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-i~~~~~~~~~~LSgGe~qrv~LAraL~~~p--~l 201 (285)
T PRK14254 126 FQKPNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-VKDQLDSSGLDLSGGQQQRLCIARAIAPDP--EV 201 (285)
T ss_pred ecCCccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-hHHHHhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 444 2232 377777654322111 00111222223333221000 00000111112222 4678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++|||+...|+...+...+.+.+...... +|+...+..+|+++..+|++|+++..++
T Consensus 202 LLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 999999999999999888888887753211 3999999999999734678999887665
No 277
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.59 E-value=3.7e-16 Score=135.75 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=107.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~ 89 (263)
.+....+++.+.+|+++||+|+||||||||+++|+|+. +|++|.|.+++.. .++ |.++. .++..
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-----------~p~~G~i~~~~~~--~i~--~v~q~~~~~~~ 81 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-----------APDEGVIKRNGKL--RIG--YVPQKLYLDTT 81 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCcc--CEE--Eeccccccccc
Confidence 35677889999999999999999999999999999994 8999999988632 122 33333 12222
Q ss_pred --eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 90 --LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 90 --l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
.++.++..+.... . ...+.+.++.++.- ...+ .....+++ ..+| +++++|||+.
T Consensus 82 l~~~~~~~~~~~~~~--~---~~~~~~~l~~~gl~-~~~~----~~~~~LSgGq~qrv~laral~~~p--~lllLDEPt~ 149 (251)
T PRK09544 82 LPLTVNRFLRLRPGT--K---KEDILPALKRVQAG-HLID----APMQKLSGGETQRVLLARALLNRP--QLLVLDEPTQ 149 (251)
T ss_pred cChhHHHHHhccccc--c---HHHHHHHHHHcCCh-HHHh----CChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCc
Confidence 2444443221110 0 11222222222210 0011 11111221 4567 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+.......+.+.+.... +. +|+.+.+.++|+++ .+|. ++++..++.
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i-~~l~-~~i~~~g~~ 204 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV-LCLN-HHICCSGTP 204 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEC-CceEeeCCH
Confidence 99999998888888776543 33 39999999999999 7786 466666543
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.59 E-value=3.3e-16 Score=154.55 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=123.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+....++.++++|+++||+|++|||||||+++|+|++ +|++|.|.++|.++..+.. .|.||
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-----------QPWSGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 56788999999999999999999999999999999995 8999999999988765322 37788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc--e----eeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD--I----IHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~--~----~~l~~------------~~~P~ 144 (263)
......-++.|+..+...... .+.+.+.++.+.+ ...++.+.+ .+ + ..+++ ..+|
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~----~~~i~~al~~~~l-~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p- 634 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIP----DADLVRACKDAAI-HDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP- 634 (710)
T ss_pred CChhhhccHHHHhhCCCCCCC----HHHHHHHHHHhCC-HHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC-
Confidence 865567899999987643221 1223333333321 011111100 00 0 11222 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++||++...|...-++..+.+.+ .+. +|..+.+. .||+| .+|++|+++..|+.+
T Consensus 635 -~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~-~~D~I-ivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 635 -SILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIR-DCDEI-IVLERGKVVQRGTHE 696 (710)
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHH-hCCEE-EEEeCCEEEEecCHH
Confidence 89999999999999887777777665 233 39988774 59999 999999998887643
No 279
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.59 E-value=4.4e-16 Score=149.94 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=127.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (263)
+.+....++..+++|+++||||++|||||||+++|+|++ +|+.|.|.++|.++..+.. .+.|
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-----------~~~~G~I~idg~dI~~i~~~~lr~~I~~V~ 409 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-----------DPTSGEILIDGIDIRDISLDSLRKRIGIVS 409 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCCeEEECCEehhhcCHHHHHHhccEEc
Confidence 467788899999999999999999999999999999995 8999999999988764322 2777
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhh---cceeEEeeccCCC---ceeeecc------------cCCCc
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DGIFHVLRAFEDP---DIIHVDD------------SVDPV 144 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---d~~l~vv~~~~~~---~~~~l~~------------~~~P~ 144 (263)
|+..-..-++.|++.++...... +++.++++.+ |.+..+-+.++.. .-..+++ ..+|
T Consensus 410 Qd~~LF~~TI~~NI~~g~~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~- 484 (567)
T COG1132 410 QDPLLFSGTIRENIALGRPDATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP- 484 (567)
T ss_pred ccceeecccHHHHHhcCCCCCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC-
Confidence 77655568999999998764222 2333333333 2222221111100 0012222 3567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++||++...|...-....+.+.+.. +++ +|..+.+.. ||+| .+|++|+++..|+.+
T Consensus 485 -~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~I-iVl~~G~i~e~G~h~ 548 (567)
T COG1132 485 -PILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRI-IVLDNGRIVERGTHE 548 (567)
T ss_pred -CEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEE-EEEECCEEEEecCHH
Confidence 8999999999999998777777666554 333 299988877 9999 999999988888654
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.3e-16 Score=148.34 Aligned_cols=175 Identities=12% Similarity=0.133 Sum_probs=113.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH------h--hhcCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPK 83 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l------~--~~~~~~ 83 (263)
+....++.++..|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+... . ..|.++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-----------EKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-----------cCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 4577889999999999999999999999999999994 89999999998665321 1 124444
Q ss_pred C----CCCcceehhhhh-----ccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 84 S----AVPAFLEIHDIA-----GLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 84 ~----~~~~~l~~~d~~-----g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
. .++..+++.++. ........ . ......+...+.... +-....+..+..+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR----VKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcC----ccCCCcccccccCCcHHHHHHHHHHHH
Confidence 3 123345444331 11110000 0 000111112222211 100001111222333
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
+.+| +++++|||+...|+...+...+.+.++...+.+ |+.+.+.++||++ .+|.+|+++..+
T Consensus 407 ~~~p--~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v-~~l~~g~i~~~~ 473 (491)
T PRK10982 407 LTQP--EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRI-LVMSNGLVAGIV 473 (491)
T ss_pred hcCC--CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEE-EEEECCEEEEEE
Confidence 4678 899999999999999999988888777655443 9999999999999 899999988543
No 281
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.9e-16 Score=136.02 Aligned_cols=180 Identities=16% Similarity=0.156 Sum_probs=116.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC------cchHH-----Hh--
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD------ERFEW-----LC-- 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g------~~~~~-----l~-- 77 (263)
.+....++.++.+|++++|+|+||||||||+++|+|.. .|+.|.|.+.| .++.. ..
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-----------~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~ 91 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-----------EIYDSKIKVDGKVLYFGKDIFQIDAIKLRKE 91 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCcCceeEcCEEEECCcccccCCHHHHhcc
Confidence 46788999999999999999999999999999999994 77776665554 33211 11
Q ss_pred hhcCCCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 78 QLFKPKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 78 ~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
..|.++. .++..+++.|++.+...... . ......+.+.++..+..-.+-+. .+.....+++ ..
T Consensus 92 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred eEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcccCCHHHHHHHHHHHHHHc
Confidence 1245554 34456788888765432111 1 11112222233333211000000 0011112222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+| ++.++|||+...|+.......+.+.+... +.+ |+...+..+|+++ .+|.+|++...++.
T Consensus 171 ~P--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v-~~l~~g~i~~~g~~ 236 (257)
T PRK14246 171 KP--KVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYV-AFLYNGELVEWGSS 236 (257)
T ss_pred CC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 78 89999999999999998888888877643 333 9999999999999 99999998877654
No 282
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.6e-16 Score=138.21 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=116.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------Hh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+..+. ...|+.|.|.++|.++.. .. ..|.
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~------~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v 111 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV------DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMV 111 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCc------cCCCCceEEEECCEECcccccCHHHHhccEEEE
Confidence 35677889999999999999999999999999999995100 001479999999876531 11 1255
Q ss_pred CCC-CCCcceehhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
++. .++. .++.|+..+...... .......+.+.++.++..-.+.. ..+.....+++ ..+|
T Consensus 112 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qrv~laral~~~p-- 187 (272)
T PRK14236 112 FQRPNPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-RLHENAFGLSGGQQQRLVIARAIAIEP-- 187 (272)
T ss_pred ecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-HhhCCcccCCHHHHHHHHHHHHHHCCC--
Confidence 554 2333 378887765422111 00011112222222221000000 00011111221 4577
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+.+.+.++|+++ .+|++|+++..++.
T Consensus 188 ~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 251 (272)
T PRK14236 188 EVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYT-AFMYMGKLVEYGDT 251 (272)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEE-EEEECCEEEecCCH
Confidence 89999999999999998888888877653 333 9999999999999 99999998877654
No 283
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.5e-16 Score=135.68 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=116.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcchHH-------H--
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------L-- 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~~~~-------l-- 76 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +| +.|.|.++|+++.. +
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS-----------ELEGPVKVEGVVDFFGQNIYDPRININRLRR 88 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------CcccCCccceEEEECCEeccccccchHhhhh
Confidence 45678899999999999999999999999999999984 42 48999999876521 1
Q ss_pred hhhcCCCC-CCCcceehhhhhccccCccc--c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 77 CQLFKPKS-AVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 77 ~~~~~~~~-~~~~~l~~~d~~g~~~~~~~--~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
...|.++. .++ ..++.|+..+...... . ........+.++.++..-. +....+.....+++ .
T Consensus 89 ~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 89 QIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-VKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred heEEEecccccC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-hhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11244555 233 3788887754321111 0 0011112222232221000 00000111112222 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhh-----cCCccccCCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ-----DGKDVRLGDWK 207 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~-----~G~~~~~g~~~ 207 (263)
.+| +++++|||+...|+.......+.+.+... +.+ |+.+.+.++||++ .+|+ +|+++..++..
T Consensus 167 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 167 IKP--KVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFT-AFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeE-EEEeccCCCCceEEEeCCHH
Confidence 577 89999999999999998888888877643 333 9999999999999 8887 48888776543
No 284
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.6e-16 Score=138.84 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=116.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------H--hhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------L--CQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l--~~~~~ 81 (263)
.+....++++|.+|+++||+|+||||||||+++|+|+..+.- -.|+.|.|.++|.++.. + ...|.
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~------~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v 131 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIK------AARIDGSVELDGQDIYQDGVNLVELRKRVGMV 131 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccccHHHHhhceEEE
Confidence 457788999999999999999999999999999999941000 01689999999876531 1 11255
Q ss_pred CCCCCCcceehhhhhccccCccc------------c---cchHHHHHHHHhhhcceeEEeeccCCCceeeecc-------
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHE------------G---QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------- 139 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~------------~---~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------- 139 (263)
++.......++.|+..+...... . ......+...++.++..-.+ ....+.....+++
T Consensus 132 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~LSgGq~qrv~ 210 (305)
T PRK14264 132 FQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-NDRLDDNALGLSGGQQQRLC 210 (305)
T ss_pred ccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-hHHhcCccccCCHHHHHHHH
Confidence 55522223588887765421110 0 00011122222222210000 0000011111222
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS----NDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~----~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+.......+.+.+..... .+|+...+.++|+++..+|++|+++..++.
T Consensus 211 LAraL~~~p--~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~ 284 (305)
T PRK14264 211 IARCLAVDP--EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDT 284 (305)
T ss_pred HHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCH
Confidence 4678 8999999999999999888888887765421 139999999999996356799999877653
No 285
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=4.5e-16 Score=130.91 Aligned_cols=160 Identities=17% Similarity=0.166 Sum_probs=103.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....++.++++|++++|+|+||||||||+++|+|+. +|++|.|.++| .++ |.++.......+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-----------~~~~G~i~~~g----~i~--~~~q~~~l~~~t 81 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-----------EKLSGSVSVPG----SIA--YVSQEPWIQNGT 81 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-----------CCCCCeEEEcC----EEE--EEecCchhccCc
Confidence 5788999999999999999999999999999999994 89999999988 122 334432222568
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-------CCceeeecc------------cCCCchhHHHHHH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-------DPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-------~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
+.|++.+...... ....+..+.++.. ..++.+. +.....+++ +.+| +++++||
T Consensus 82 ~~enl~~~~~~~~-----~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p--~llllDE 153 (204)
T cd03250 82 IRENILFGKPFDE-----ERYEKVIKACALE-PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA--DIYLLDD 153 (204)
T ss_pred HHHHhccCCCcCH-----HHHHHHHHHcCcH-HHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeC
Confidence 8888876532211 1111111111110 0011000 000111221 4678 8999999
Q ss_pred HhhhccHHHHHHHHHH-HHHHhhhccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 153 ELRLKDIEFMERRIED-VEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~-~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
|+...|+...+...+. +.+....+.+ |+...+.. |+++ .+|++|
T Consensus 154 P~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i-~~l~~G 203 (204)
T cd03250 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI-VVLDNG 203 (204)
T ss_pred ccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE-EEEeCC
Confidence 9999999988877663 4444333332 99888877 9988 777666
No 286
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=7.2e-16 Score=144.25 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=127.3
Q ss_pred CCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch-------HH----H
Q 024748 8 SKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-------EW----L 76 (263)
Q Consensus 8 ~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~-------~~----l 76 (263)
..+..|-+.++..+.+|+++||||.+|||||||.++|+|+. .|+.|.|.+.|.++ .. +
T Consensus 301 ~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-----------~P~~G~i~~~g~~~~~~~~~~~~~r~~~ 369 (539)
T COG1123 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-----------PPSSGSIIFDGQDLDLTGGELRRLRRRI 369 (539)
T ss_pred ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEEeCcccccccchhhhhhhhe
Confidence 34567889999999999999999999999999999999994 89999999988651 11 2
Q ss_pred hhhcCCC-CCCCcceehhhhhccccCccccc---chHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 77 CQLFKPK-SAVPAFLEIHDIAGLVRGAHEGQ---GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 77 ~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
..+||.+ ..+...+++.+.+.-....+... .....+.+.++.+++- ..+-+.....+++ +
T Consensus 370 QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~----~~~l~ryP~elSGGQrQRvaIARALa 445 (539)
T COG1123 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALA 445 (539)
T ss_pred EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC----HHHHhcCchhcCcchhHHHHHHHHHh
Confidence 2235543 46667888888776544333221 1111222223333221 1011111112333 5
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
.+| ++.+.||+...+|+......++.+.++... +.+ |++..++.+|||| .+|..|+++..|+
T Consensus 446 ~~P--~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv-~vm~~G~iVE~G~ 513 (539)
T COG1123 446 LEP--KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV-AVMYDGRIVEEGP 513 (539)
T ss_pred cCC--CEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceE-EEEECCeEEEeCC
Confidence 788 899999999999999988888888777643 333 9999999999999 9999999999884
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=5.2e-16 Score=152.72 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=125.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+..+.++.++++|++++|+|+||||||||+++|+|++ +|++|.|.++|.++..+.. .|.||
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-----------~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-----------QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 46788899999999999999999999999999999995 8999999999988764322 37788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~~ 145 (263)
......-++.|+..+....... +++.+.++.+.+ +..+-+.++.. .-..+++ ..+|
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p-- 620 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP-- 620 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 7555567999999887543221 233333333321 11111111100 0011222 3567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|...-++..+.+.+... +. +|..+.+ +.||+| .+|++|+++..|+.
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~~-~~~D~i-ivl~~G~i~e~G~~ 683 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSLL-DLVDRI-IVMDNGRIVADGPK 683 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHH-HhCCEE-EEEeCCEEEeeCCH
Confidence 89999999999999988887777776642 33 3998876 679999 99999999888754
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.58 E-value=6.3e-16 Score=127.27 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=93.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceeh
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~ 92 (263)
..... .++++|++++|+|+||||||||+|+|+|+. .|+.|.|.++|..+. |.++..
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~-----~~~q~~------- 70 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL-----------IPNGDNDEWDGITPV-----YKPQYI------- 70 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC-----------CCCCcEEEECCEEEE-----EEcccC-------
Confidence 34443 688999999999999999999999999994 899999999885421 111110
Q ss_pred hhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHH
Q 024748 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS 172 (263)
Q Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~ 172 (263)
. .+ .+++-. +.. .+++ ..+| ++.++|||+...|+...+...+.+.+.
T Consensus 71 ----~----LS----gGq~qr--v~l-------aral----------~~~p--~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 71 ----D----LS----GGELQR--VAI-------AAAL----------LRNA--TFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred ----C----CC----HHHHHH--HHH-------HHHH----------hcCC--CEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 0 11 122111 111 1111 1346 788889999999999988888888776
Q ss_pred hhhc-cc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 173 MKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 173 ~~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
...+ .+ |+...+..+|+++ .+|+++..++.
T Consensus 118 ~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~~~~~~~ 153 (177)
T cd03222 118 SEEGKKTALVVEHDLAVLDYLSDRI-HVFEGEPGVYG 153 (177)
T ss_pred HHcCCCEEEEEECCHHHHHHhCCEE-EEEcCCCccce
Confidence 5443 33 9999999999999 88887765544
No 289
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.7e-16 Score=134.15 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=109.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH------hhh--cCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQL--FKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l------~~~--~~~ 82 (263)
++-.-+++|+|++|++++|+|+||||||||+++++|.. .|..|.+.+.|+++... ... +..
T Consensus 44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-----------~pssg~~~~~G~~~G~~~~~~elrk~IG~vS 112 (257)
T COG1119 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-----------PPSSGDVTLLGRRFGKGETIFELRKRIGLVS 112 (257)
T ss_pred EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-----------CCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence 45567899999999999999999999999999999995 77888888888765321 110 110
Q ss_pred ---CCCCCcceehhhhh--------ccccCcccccchHHHHHHHHhhhcceeEEeec-cC-----CCceeeecc--cCCC
Q 024748 83 ---KSAVPAFLEIHDIA--------GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA-FE-----DPDIIHVDD--SVDP 143 (263)
Q Consensus 83 ---~~~~~~~l~~~d~~--------g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~-~~-----~~~~~~l~~--~~~P 143 (263)
...++.+.++.|.+ |++....... ...+....++...+ -+..+. |. ....+.+.. ..+|
T Consensus 113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~-~~~~a~~lle~~g~-~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE-DLAAAQWLLELLGA-KHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred HHHHhhcccccccceeeeecccccccccccCCCHH-HHHHHHHHHHHcch-hhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 01122234444443 3322111100 01111111111110 001110 10 001111111 5678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhh--cc-----chhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR--SN-----DKQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~--~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
.++++|||+.+.|...++++.+.+.+.... +. ||+.+++-...+++ ..|.+|++++.|
T Consensus 191 --~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~-lll~~g~v~~~g 255 (257)
T COG1119 191 --ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGEVVAQG 255 (257)
T ss_pred --CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE-EEeeCCceeecc
Confidence 899999999999999999999988887643 11 39999998889998 888899888765
No 290
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.57 E-value=7e-16 Score=149.13 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=123.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.++++|++++|+|++|||||||+++|+|+ . |.+|.|.++|.++..+. . .|.||
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-----------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-----------L-PYQGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------C-CCCcEEEECCEecccCCHHHHHhheEEecC
Confidence 5678889999999999999999999999999999999 5 88999999998765422 1 37888
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~~ 145 (263)
...-.+-++.|+..++.+.... +++.+.++.+.+ +..+=+.++.. .-..+++ ..+|
T Consensus 431 ~~~LF~~TI~eNI~~g~~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~-- 504 (588)
T PRK11174 431 NPQLPHGTLRDNVLLGNPDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC-- 504 (588)
T ss_pred CCcCCCcCHHHHhhcCCCCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 8665678999999887542221 233333333321 11111111100 0012332 3567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++||++...|.+.-++..+.+.+.. .+.| |..+.+ +.||+| .+|++|+++..|+.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i-~~aD~I-ivl~~G~i~e~G~~~ 568 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDL-AQWDQI-WVMQDGQIVQQGDYA 568 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHH-HhCCEE-EEEeCCeEeecCCHH
Confidence 8999999999999998888777777664 2333 998776 559999 999999998888643
No 291
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.57 E-value=6.6e-16 Score=152.35 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=123.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+....++.++++|+++||+|+||||||||+++|+|++ +|++|.|.++|.++..+.. .|.||
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 555 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-----------QARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCcEEEECCEEHHHcCHHHHHHheEEEec
Confidence 56788999999999999999999999999999999995 8999999999988765322 37788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~~ 145 (263)
......-++.|++.+....... .+++.+.++.+.. +..+-+.++.. .-..+++ ..+|
T Consensus 556 ~~~lf~gTI~eNi~l~~~~~~~---~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p-- 630 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAKENVS---QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS-- 630 (708)
T ss_pred CceehhHHHHHHHhccCCCCCC---HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC--
Confidence 8555577999999887321111 1223333333321 11111111100 0011222 3567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|...-++..+.+.+. .+.| |..+.+ +.||+| .+|++|+++..|+.
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~-~~~D~i-~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVA-KQSDKI-IVLDHGKIIEQGSH 692 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHH-HcCCEE-EEEECCEEEEECCH
Confidence 899999999999999877777777654 2333 998866 679999 99999999887764
No 292
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.57 E-value=8.2e-16 Score=148.29 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=123.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|.+ +|++|.|.++|.++..+. . .|.||
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-----------~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 421 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-----------DPQQGEILLNGQPIADYSEAALRQAISVVSQ 421 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEEhhhCCHHHHHhheeEEcc
Confidence 35788899999999999999999999999999999995 899999999998765422 1 26777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeec---cCCC---ceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA---FEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~---~~~~---~~~~l~~------------~~~P~~ 145 (263)
+.....-++.|+..+...... .+++.+.++.+..- ..++. ++.. .-..+++ ..+|
T Consensus 422 ~~~lf~~ti~~Ni~~~~~~~~----~~~i~~al~~~~l~-~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~-- 494 (574)
T PRK11160 422 RVHLFSATLRDNLLLAAPNAS----DEALIEVLQQVGLE-KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA-- 494 (574)
T ss_pred cchhhcccHHHHhhcCCCccC----HHHHHHHHHHcCCH-HHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 755556799999988754221 12333333433221 01111 1100 0112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|....+...+.+.+.. .+.+ |..+.+. .||+| ..|++|+++..|+.
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~-~~d~i-~~l~~G~i~~~g~~ 557 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLE-QFDRI-CVMDNGQIIEQGTH 557 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHH-hCCEE-EEEeCCeEEEeCCH
Confidence 8999999999999998888777777664 2333 9988875 59999 99999999887753
No 293
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.57 E-value=2.8e-15 Score=130.89 Aligned_cols=90 Identities=39% Similarity=0.669 Sum_probs=84.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-.+++||+|++|||||||.|||....+++|||||+.|..|.+.+.| ++++++|+||+..++..
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~gas~ 126 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGASS 126 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccCccc
Confidence 4899999999999999999999998899999999999999999987 57999999999999998
Q ss_pred ccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
+.+++++++..+|.||+++.++|++.+
T Consensus 127 g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred CCCCcceeeeeeccCCEEEEEEecCCC
Confidence 888899999999999999999998753
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.57 E-value=3.1e-16 Score=141.11 Aligned_cols=159 Identities=14% Similarity=0.226 Sum_probs=106.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-CCCcceehhhhhccccCc
Q 024748 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 29 ivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~-~~~~~l~~~d~~g~~~~~ 102 (263)
|+|+||||||||+++|+|+. +|++|.|.++|+.+.... ..|.+|. .++..+++.++..+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-----------QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh
Confidence 68999999999999999994 899999999997653211 1244444 345578999998765322
Q ss_pred ccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHH
Q 024748 103 HEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIED 168 (263)
Q Consensus 103 ~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~ 168 (263)
... ......+.+.++..+. ..+.+.....+++ ..+| +++++|||+...|+...+...+.
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~qRvalaraL~~~p--~lllLDEP~s~LD~~~~~~l~~~ 142 (325)
T TIGR01187 70 RKVPRAEIKPRVLEALRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKP--KILLLDEPLSALDKKLRDQMQLE 142 (325)
T ss_pred cCCCHHHHHHHHHHHHHHcCC-----cchhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCCccCCHHHHHHHHHH
Confidence 110 1111122222332221 1111111122232 4678 89999999999999999988888
Q ss_pred HHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 169 VEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 169 ~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+.+.... +.+ |+...+..+||++ .+|++|++...++.
T Consensus 143 l~~l~~~~g~tiiivTHd~~e~~~~~d~i-~vl~~G~i~~~g~~ 185 (325)
T TIGR01187 143 LKTIQEQLGITFVFVTHDQEEAMTMSDRI-AIMRKGKIAQIGTP 185 (325)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 8876543 333 9999999999999 99999998876654
No 295
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.57 E-value=8.2e-16 Score=133.96 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....+++.+.+|+++||+|+||||||||+++|+|+. .|+.|.|.++|.++... .. .|.++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q 102 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-----------DIFDGKIVIDGIDISKLPLHTLRSRLSIILQ 102 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-----------CCCCCeEEECCEEhhhCCHHHHhhhEEEECC
Confidence 45788999999999999999999999999999999994 89999999999776431 11 24444
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhh--cceeEEee-ccC---CCceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV--DGIFHVLR-AFE---DPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--d~~l~vv~-~~~---~~~~~~l~~------------~~~P~~ 145 (263)
.......++.++....... . .......++.. ...+..+. ..+ ......+++ ..+|
T Consensus 103 ~~~l~~~tv~~nl~~~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p-- 175 (257)
T cd03288 103 DPILFSGSIRFNLDPECKC--T---DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS-- 175 (257)
T ss_pred CCcccccHHHHhcCcCCCC--C---HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC--
Confidence 4222234666665432111 0 01111111110 00000000 000 000011221 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+.. .+.+ |+...+.. |+++ .+|.+|+++..++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~dri-~~l~~G~i~~~g~~ 238 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-ADLV-LVLSRGILVECDTP 238 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-CCEE-EEEECCEEEEeCCH
Confidence 8999999999999998888777776653 3332 99998875 9999 99999998877653
No 296
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=2.1e-15 Score=129.70 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=108.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
..|...++..|++|+++||||.+|||||||-++|+|+. +|+.|.|.+.|+++..+... .....-.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-----------~pt~G~i~f~g~~i~~~~~~----~~~~~v~ 90 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-----------EPTSGEILFEGKDITKLSKE----ERRERVL 90 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-----------CCCCceEEEcCcchhhcchh----HHHHHHH
Confidence 46788999999999999999999999999999999994 99999999999875443200 0000011
Q ss_pred ehhhhhcccc-----CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHH
Q 024748 91 EIHDIAGLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (263)
Q Consensus 91 ~~~d~~g~~~-----~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~ 165 (263)
.+.+.+|+.. ..|. +..-.++.+.- .++ -+.+| ++.+.||+....|.......
T Consensus 91 elL~~Vgl~~~~~~ryPhe---lSGGQrQRi~I-------ARA----------Lal~P--~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHE---LSGGQRQRIGI-------ARA----------LALNP--KLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred HHHHHhCCCHHHhhcCCcc---cCchhhhhHHH-------HHH----------HhhCC--cEEEecCchhhcchhHHHHH
Confidence 2233333221 1111 00000010000 111 04678 89999999999999888887
Q ss_pred HHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 166 IEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 166 ~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+..+.++... +. +|++..+..+|||+ ++|..|+++-.|+..
T Consensus 149 lnLL~dlq~~~~lt~lFIsHDL~vv~~isdri-~VMy~G~iVE~g~~~ 195 (268)
T COG4608 149 LNLLKDLQEELGLTYLFISHDLSVVRYISDRI-AVMYLGKIVEIGPTE 195 (268)
T ss_pred HHHHHHHHHHhCCeEEEEEEEHHhhhhhcccE-EEEecCceeEecCHH
Confidence 7777766543 22 39999999999999 999999998877543
No 297
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=1.7e-15 Score=127.12 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=100.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh-hcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ-LFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~-~~~~~~ 84 (263)
.+....+++.+.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|+.+... .. .|.++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-----------~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~ 82 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-----------NPEKGEILFERQSIKKDLCTYQKQLCFVGHR 82 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeeEEECCCccccCHHHHHhheEEeccc
Confidence 45788999999999999999999999999999999994 89999999998765321 11 244444
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
..+...++.|+..+....... ...+.+.++..+.- ...+ .....+++ ..+| +++++|
T Consensus 83 ~~~~~~~tv~~~~~~~~~~~~~---~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~~rv~laral~~~p--~~lilD 152 (200)
T PRK13540 83 SGINPYLTLRENCLYDIHFSPG---AVGITELCRLFSLE-HLID----YPCGLLSSGQKRQVALLRLWMSKA--KLWLLD 152 (200)
T ss_pred cccCcCCCHHHHHHHHHhcCcc---hHHHHHHHHHcCCc-hhhh----CChhhcCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 334467888887654211111 11222233322210 0111 11111221 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHH
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIE 184 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i 184 (263)
||+...|+...+...+.+.+....+.+ |+...+
T Consensus 153 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 999999999998888888776433332 765554
No 298
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.56 E-value=2.3e-15 Score=126.02 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=95.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh------hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~------~~~~~~~ 84 (263)
.+....+++++.+|+++||+|+||||||||+++|+|.. +|+.|.|.++|..+.... ..|.++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-----------RPDSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCccEEEECCEEcccchHHhhhheEEeccC
Confidence 35678899999999999999999999999999999994 899999999987653211 1244444
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
.++..+++.|++.+........ ...+.+.++..+.- .+.+..+..+++ ..+| ++.++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~--~~~~~~~l~~~~l~-----~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllD 152 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHGGA--QRTIEDALAAVGLT-----GFEDLPAAQLSAGQQRRLALARLWLSRA--PLWILD 152 (198)
T ss_pred cccccCCcHHHHHHHHHHHcCCc--HHHHHHHHHHcCCH-----HHhcCChhhcCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 3344578888876643222111 11222222222210 000111111221 4567 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhc
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRS 176 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~ 176 (263)
||+...|+...+...+.+.+....+
T Consensus 153 EPt~~LD~~~~~~l~~~l~~~~~~~ 177 (198)
T TIGR01189 153 EPTTALDKAGVALLAGLLRAHLARG 177 (198)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999998888777777654333
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.56 E-value=8.4e-16 Score=149.78 Aligned_cols=177 Identities=11% Similarity=0.084 Sum_probs=112.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....++++|.+|+++||+|+||||||||+++|+|. ..|+.|.|.+ |..+ .++.+++....++..++
T Consensus 333 ~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~-~~~~-~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-----------LQADSGRIHC-GTKL-EVAYFDQHRAELDPEKT 399 (635)
T ss_pred EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCCc-EEEEEeCcccccCCCCC
Confidence 456778899999999999999999999999999999 4899999988 4332 22322322223555678
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~ 159 (263)
+.+++.+.............+.+.+..... .....+..+..+++ ..+| +++++|||+...|+
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGekqRl~la~al~~~p--~lLlLDEPt~~LD~ 473 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLF----HPKRAMTPVKALSGGERNRLLLARLFLKPS--NLLILDEPTNDLDV 473 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCC----CHHHHhChhhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCH
Confidence 888876542211000111122222222111 00000111122332 3567 89999999999999
Q ss_pred HHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhh-cCCcc-ccCCCCH
Q 024748 160 EFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQ-DGKDV-RLGDWKA 208 (263)
Q Consensus 160 ~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~-~G~~~-~~g~~~d 208 (263)
...+...+.+.+... .-.+|+...+..+|+++ .+|. +|++. |.|++++
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i-~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTEC-WIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEE-EEEeCCCeEEEccCCHHH
Confidence 988877766665411 01139999999999999 7886 78876 4477764
No 300
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=9.8e-16 Score=150.81 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|++ +|++|.|.++|.++..+. . .|.||
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-----------~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q 538 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-----------TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEehhhCCHHHHHHhCeEEcc
Confidence 45678899999999999999999999999999999995 899999999998875432 1 27777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCC---Cceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~---~~~~~l~~------------~~~P~~ 145 (263)
......-++.|+..+....... ..+.+.++.+.. +..+-..++. ..-..+++ ..+|
T Consensus 539 ~~~lf~~ti~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~-- 612 (694)
T TIGR01846 539 ENVLFSRSIRDNIALCNPGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP-- 612 (694)
T ss_pred CCeehhhhHHHHHhcCCCCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC--
Confidence 7555577999999876532211 222233332221 1111001100 00011222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|....++..+.+.+.. .+.| |..+.+. .||++ .+|++|+++..|+.
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i-i~l~~G~i~~~g~~ 675 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVR-ACDRI-IVLEKGQIAESGRH 675 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHH-hCCEE-EEEeCCEEEEeCCH
Confidence 8999999999999998888888787764 3333 9998775 59999 99999999888764
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.5e-16 Score=146.51 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=113.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC---CCCc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS---AVPA 88 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~---~~~~ 88 (263)
+....++.+|.+|+++||+|+||||||||+++|+|+. .|+.|.|.+++.. .++ |.++. .++.
T Consensus 333 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-----------~p~~G~i~~~~~~--~i~--~~~q~~~~~~~~ 397 (530)
T PRK15064 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-----------EPDSGTVKWSENA--NIG--YYAQDHAYDFEN 397 (530)
T ss_pred eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCce--EEE--EEcccccccCCC
Confidence 4567789999999999999999999999999999994 8999999998742 222 33333 2344
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhh
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 156 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~ 156 (263)
.+++.++..+..... .....+.+.++..+.. ....+..+..+++ ..+| +++++|||+..
T Consensus 398 ~~t~~~~~~~~~~~~---~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGq~qrv~la~al~~~p--~lllLDEPt~~ 468 (530)
T PRK15064 398 DLTLFDWMSQWRQEG---DDEQAVRGTLGRLLFS----QDDIKKSVKVLSGGEKGRMLFGKLMMQKP--NVLVMDEPTNH 468 (530)
T ss_pred CCcHHHHHHHhccCC---ccHHHHHHHHHHcCCC----hhHhcCcccccCHHHHHHHHHHHHHhcCC--CEEEEcCCCCC
Confidence 577777765422111 1112222223332210 0000111122222 4567 89999999999
Q ss_pred ccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 157 KDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
.|+...+...+.+.+... .-.+|+.+.+..+|+++ .+|.+|+++ +.|+..
T Consensus 469 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i-~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 469 MDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRI-IEITPDGVVDFSGTYE 521 (530)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEcCCCHH
Confidence 999998888887776521 01139999999999999 899999887 556543
No 302
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.4e-15 Score=129.13 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=112.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch-------------HHHhhhcCCCCCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-------------EWLCQLFKPKSAV 86 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~-------------~~l~~~~~~~~~~ 86 (263)
.++.--+++|.|++|||||||+|+++|+ ++|+.|.|.++|+.+ .+++++||..+.
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL- 87 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL- 87 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhcc-----------CCccccEEEECCEEeecccCCcccChhhheeeeEeecccc-
Confidence 3344369999999999999999999999 599999999999754 234555654444
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHh
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~ 154 (263)
+.++++.-+..++..... ...|...+.... +-++++-+- ..+++ ..+| +++++|||+
T Consensus 88 FpH~tVrgNL~YG~~~~~----~~~fd~iv~lLG-I~hLL~R~P----~~LSGGEkQRVAIGRALLt~P--~LLLmDEPL 156 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSM----RAQFDQLVALLG-IEHLLDRYP----GTLSGGEKQRVAIGRALLTAP--ELLLMDEPL 156 (352)
T ss_pred ccceEEecchhhhhcccc----hHhHHHHHHHhC-cHHHHhhCC----CccCcchhhHHHHHHHHhcCC--CeeeecCch
Confidence 458999988887765431 222222211111 111121110 01221 3568 899999999
Q ss_pred hhccHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 155 RLKDIEFMERRIEDVEKSMKRS------NDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~~------~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
...|..-..+.+..++.+...- .+|+++++.+|+|++ .+|++|++...|...
T Consensus 157 aSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~e 214 (352)
T COG4148 157 ASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRV-VVLENGKVKASGPLE 214 (352)
T ss_pred hhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheE-EEecCCeEEecCcHH
Confidence 9999877667666666665322 249999999999999 999999998887654
No 303
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=1.2e-14 Score=136.24 Aligned_cols=105 Identities=34% Similarity=0.599 Sum_probs=92.2
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCc
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPA 88 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~ 88 (263)
-+.++++.+...++.--.|+|||.||||||||||.|++....+++|||||+.|+.|.+.+.+ .
T Consensus 144 G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~-----------------~ 206 (500)
T PRK12296 144 GEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD-----------------T 206 (500)
T ss_pred CCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC-----------------e
Confidence 35667777777777778999999999999999999999988889999999999999998765 2
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.++++|+||+....+...+++..++.+++.+|++++|+|+..
T Consensus 207 ~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 207 RFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred EEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 589999999998777777788899999999999999999863
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=2.3e-15 Score=125.75 Aligned_cols=150 Identities=9% Similarity=0.049 Sum_probs=94.1
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh---hhcCCCC-CCCccee
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPAFLE 91 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~---~~~~~~~-~~~~~l~ 91 (263)
.+++++++|+++||+|+||||||||+++|+|+. .|+.|.|.++|..+.... ..|.++. .++..++
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~t 86 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-----------QPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMT 86 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCcccChhhhhhEEeccCCcCCCccCC
Confidence 388999999999999999999999999999994 899999999997654321 1244443 3445678
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~ 159 (263)
+.|+..+....+.. .....+.++.++.- ...+ .....+++ ..+| +++++|||+...|+
T Consensus 87 v~~~l~~~~~~~~~---~~~~~~~l~~~~l~-~~~~----~~~~~LS~G~~~rl~la~al~~~p--~~lllDEP~~~LD~ 156 (195)
T PRK13541 87 VFENLKFWSEIYNS---AETLYAAIHYFKLH-DLLD----EKCYSLSSGMQKIVAIARLIACQS--DLWLLDEVETNLSK 156 (195)
T ss_pred HHHHHHHHHHhccc---HHHHHHHHHHcCCH-hhhc----cChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCH
Confidence 88877654322111 11111222222110 0000 01111111 4567 89999999999999
Q ss_pred HHHHHHHHHHHHHhhhccc-----hhHHHHHH
Q 024748 160 EFMERRIEDVEKSMKRSND-----KQLKIEHE 186 (263)
Q Consensus 160 ~~~~k~~~~~~~~~~~~~~-----h~~~~i~~ 186 (263)
...+...+.+.+....+.+ |+...+..
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 9888877777644333332 76655433
No 305
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.2e-15 Score=152.77 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=126.4
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhhh--cC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQL--FK 81 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~~--~~ 81 (263)
.|.+-.+.++.+|++|+.++|||++||||||++++|.+++ +|+.|.|.++|.++.. +... .+
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-----------dP~~G~V~idG~di~~~~~~~lr~~iglV 432 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-----------DPTSGEVLIDGEDIRNLNLKWLRSQIGLV 432 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-----------CCCCceEEEcCccchhcchHHHHhhcCee
Confidence 3667788899999999999999999999999999999996 9999999999987753 2221 33
Q ss_pred CCCCCCcceehhhhhccccCcccccchHHHHHHHHhhh---cceeEEeeccCCC---ceeeecc------------cCCC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DGIFHVLRAFEDP---DIIHVDD------------SVDP 143 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---d~~l~vv~~~~~~---~~~~l~~------------~~~P 143 (263)
.|..+.+..++.|++.+++.....+ ...++.+.+ |.+..+-+.++.. .-..++| ..+|
T Consensus 433 ~QePvlF~~tI~eNI~~G~~dat~~----~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 433 SQEPVLFATTIRENIRYGKPDATRE----EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred eechhhhcccHHHHHhcCCCcccHH----HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence 4454556889999999987553222 222222222 2222222222211 0112443 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|+++||++..+|.+.-+-..+.+.+.. .+.| |.++.+.. +|+| .++++|+++..|+-+
T Consensus 509 --~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrn-aD~I-~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 509 --KILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRN-ADKI-AVMEEGKIVEQGTHD 572 (1228)
T ss_pred --CEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhc-cCEE-EEEECCEEEEecCHH
Confidence 8999999999999987554445454443 4433 99999988 9999 999999999888643
No 306
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.55 E-value=2e-15 Score=144.71 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=120.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|.+ +|.+|.|.++|.++..+. -.|.||
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----------~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-----------PPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 46788999999999999999999999999999999995 899999999998765421 136777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc--eeEEe-eccCC---Cceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG--IFHVL-RAFED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~--~l~vv-~~~~~---~~~~~l~~------------~~~P~~ 145 (263)
......-++.|+..+....... +++.+.++.+.. .+.-+ +.++. .....+++ ..+|
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~-- 473 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADP----EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP-- 473 (544)
T ss_pred CcccccccHHHHHhccCCCCCH----HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC--
Confidence 7444456889998765432111 222222222211 00000 00000 00112222 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|....++..+.+.+....+.+ |..+.+ +.||++ ..|++|+++..|+.
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i-~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKI-LVLQDGRIARFGER 537 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEE-EEEECCEEEeeCCH
Confidence 899999999999999888877777765423333 888765 679999 99999999877754
No 307
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.55 E-value=4.2e-15 Score=125.37 Aligned_cols=158 Identities=9% Similarity=0.034 Sum_probs=102.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--H--hhhcCCCC-CC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--L--CQLFKPKS-AV 86 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l--~~~~~~~~-~~ 86 (263)
.....+++.|++|+++||+|+||||||||+++|+|+. +|+.|.|.++|..+.. . ...|.++. .+
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-----------PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM 84 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEeCcchhhHhhcEEecCCCcC
Confidence 4678899999999999999999999999999999994 7999999999865421 1 11244433 33
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHh
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~ 154 (263)
+..+++.|+..+....+... ...+.+.++..+.- . +.+.....+++ ..+| +++++|||+
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~--~~~~~~~l~~~~l~-~----~~~~~~~~LS~G~~qrl~la~al~~~p--~llllDEPt 155 (207)
T PRK13539 85 KPALTVAENLEFWAAFLGGE--ELDIAAALEAVGLA-P----LAHLPFGYLSAGQKRRVALARLLVSNR--PIWILDEPT 155 (207)
T ss_pred CCCCcHHHHHHHHHHhcCCc--HHHHHHHHHHcCCH-H----HHcCChhhcCHHHHHHHHHHHHHhcCC--CEEEEeCCc
Confidence 44678888775533221110 11222222332210 0 00111111221 4567 899999999
Q ss_pred hhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 155 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
...|+...+...+.+.+....+.+ |+...+.. +++
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 999999998888888776544433 88777665 544
No 308
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=1.5e-15 Score=146.25 Aligned_cols=176 Identities=13% Similarity=0.153 Sum_probs=120.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|++ +|++|.|.++|.++..+. . .|.+|
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-----------DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 45788899999999999999999999999999999995 899999999998765321 1 26666
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCC---Cceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~---~~~~~l~~------------~~~P~~ 145 (263)
......-++.|+..+....... ..+...++.+.. +..+-+.++. ..-..+++ ..+|
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~-- 470 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA-- 470 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC--
Confidence 6444456889998876432211 122222222211 1111011100 00011222 4667
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|....++..+.+.+.. .+.| |..+.+ +.||++ ..|++|+++..|+.
T Consensus 471 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~-~~~d~i-~~l~~G~i~~~g~~ 533 (569)
T PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSAL-TEASEI-LVMQHGHIAQRGNH 533 (569)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHH-HcCCEE-EEEeCCEEEEecCH
Confidence 8999999999999998888878777654 3333 888766 559999 89999999877754
No 309
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.55 E-value=1.7e-15 Score=149.48 Aligned_cols=174 Identities=15% Similarity=0.179 Sum_probs=120.0
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (263)
+.+....++.++++|++++|+|+||||||||+++|+|++ +|++|.|.++|.++..+.. .|.|
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 561 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-----------QPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-----------CCCCCEEEECCEEHHhcCHHHHHhhceEEe
Confidence 356788899999999999999999999999999999995 8999999999988764321 3778
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc--e----eeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD--I----IHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~--~----~~l~~------------~~~P 143 (263)
|+.....-++.|+..+...... .+++.+.++.+.+- ..++.+.+ .+ + ..+++ ..+|
T Consensus 562 Q~~~lF~gTIreNI~~g~~~~~----~e~i~~al~~a~l~-~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 562 QEPVLFSGSVRENIAYGLTDTP----DEEIMAAAKAANAH-DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred cCccccccCHHHHHhcCCCCCC----HHHHHHHHHHcCCH-HHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 8866567899999988754322 12333333433221 11111100 00 0 11222 3567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++||++...|.+.-++..+ ... . .+.| |..+.+ +.||+| .+|++|+++..|+.
T Consensus 637 --~ILILDEpTSaLD~~te~~i~~-~~~-~-~~~TvIiItHrl~~i-~~aD~I-ivL~~G~ive~Gt~ 697 (711)
T TIGR00958 637 --RVLILDEATSALDAECEQLLQE-SRS-R-ASRTVLLIAHRLSTV-ERADQI-LVLKKGSVVEMGTH 697 (711)
T ss_pred --CEEEEEccccccCHHHHHHHHH-hhc-c-CCCeEEEEeccHHHH-HhCCEE-EEEECCEEEEeeCH
Confidence 8999999999999976554443 221 1 2333 998876 569999 99999999888764
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.55 E-value=3.1e-15 Score=122.01 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=97.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++.+|++++|+|+||||||||+++|+|+. +|+.|.|.+++.+ .++ |.++.......
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~~~~--~i~--~~~q~~~~~~~ 78 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-----------PWGSGRIGMPEGE--DLL--FLPQRPYLPLG 78 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCCc--eEE--EECCCCccccc
Confidence 35778899999999999999999999999999999994 8999999998741 122 33443222356
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE 170 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~ 170 (263)
++.|+..+.... ...-+++ ..+.. .+++ ..+| +++++|||+...|+...+...+.+.
T Consensus 79 tv~~nl~~~~~~--~LS~G~~--~rv~l-------aral----------~~~p--~~lllDEPt~~LD~~~~~~l~~~l~ 135 (166)
T cd03223 79 TLREQLIYPWDD--VLSGGEQ--QRLAF-------ARLL----------LHKP--KFVFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred cHHHHhhccCCC--CCCHHHH--HHHHH-------HHHH----------HcCC--CEEEEECCccccCHHHHHHHHHHHH
Confidence 788877542111 1111111 11111 1111 2346 7888999999999998888777776
Q ss_pred HHhh--hccchhHHHHHHHHHHHHHHhhcC
Q 024748 171 KSMK--RSNDKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 171 ~~~~--~~~~h~~~~i~~l~d~i~~~L~~G 198 (263)
+... .-.+|+... ..+||++ .+|+++
T Consensus 136 ~~~~tiiivsh~~~~-~~~~d~i-~~l~~~ 163 (166)
T cd03223 136 ELGITVISVGHRPSL-WKFHDRV-LDLDGE 163 (166)
T ss_pred HhCCEEEEEeCChhH-HhhCCEE-EEEcCC
Confidence 6410 011388765 4688888 555543
No 311
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.54 E-value=1.7e-15 Score=146.34 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=120.9
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~~ 84 (263)
+..+.++.++++|++++|+|+||||||||+++|+|.+ +|++|.|.++|.++..+. . .|.||.
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-----------DPTVGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-----------CCCCCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 4678889999999999999999999999999999995 899999999998765422 1 266777
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhh---cceeEEeeccCC---Cceeeecc------------cCCCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DGIFHVLRAFED---PDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---d~~l~vv~~~~~---~~~~~l~~------------~~~P~~~ 146 (263)
.....-++.|+..+....... .+..+.++.+ +.+...-+.++. .....+++ ..+| +
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~~~----~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p--~ 491 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGATD----EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA--P 491 (585)
T ss_pred CccCcccHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC--C
Confidence 444467899999876432211 1222222222 111111111110 01112332 4677 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|....+...+.+.+.. .+.+ |+.+.+ ..||++ ..|++|+++..|+.
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~-~~~d~i-~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTV-RNADLV-LFLDQGRLIEKGSF 553 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHH-HcCCEE-EEEECCEEEEECCH
Confidence 999999999999998888777777654 2333 999887 459999 99999998877754
No 312
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.54 E-value=1.7e-15 Score=146.58 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=121.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.++++|+++||+|++|||||||+++|+|++ +|+.|.|.++|.++..+. . .|.||
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-----------~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-----------PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 46788899999999999999999999999999999995 899999999998876432 1 27777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----CCC---ceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----EDP---DIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~~~---~~~~l~~------------~~~P~ 144 (263)
...-..-++.|+..+.... .. .++.+.++.+..- ..++.+ +.. .-..+++ ..+|
T Consensus 423 ~~~lF~~Ti~~NI~~~~~~-~d----~~i~~a~~~~gl~-~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~- 495 (592)
T PRK10790 423 DPVVLADTFLANVTLGRDI-SE----EQVWQALETVQLA-ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP- 495 (592)
T ss_pred CCccccchHHHHHHhCCCC-CH----HHHHHHHHHcCcH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC-
Confidence 7554566899999887522 11 1222222222110 011111 000 0001222 3566
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|.+.-+...+.+.+...... +|....+. .||+| .+|++|+++..|+.+
T Consensus 496 -~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~i-i~l~~G~i~~~G~~~ 559 (592)
T PRK10790 496 -QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTI-LVLHRGQAVEQGTHQ 559 (592)
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEE-EEEECCEEEEEcCHH
Confidence 89999999999999987777777766543221 39887654 69999 899999998877644
No 313
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.54 E-value=3.9e-15 Score=143.52 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=123.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+..+.++.++++|++++|+|+||||||||+++|+|++ +|..|.|.++|.++..+. -.|.||
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-----------~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-----------DPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-----------CCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 45678899999999999999999999999999999995 899999999998775432 137788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC---C----ceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED---P----DIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~---~----~~~~l~~------------~~~P~ 144 (263)
.....+-++.|+..+..+... ..++.+.++.+.. ...++.+.+ . .-..+++ ..+|
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~----~~~~~~~l~~~~l-~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~- 495 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDAT----DEEVEAAARAAHA-HEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA- 495 (576)
T ss_pred CCccccccHHHHHhcCCCCCC----HHHHHHHHHHcCc-HHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC-
Confidence 866667899999988653321 1233333333321 111222210 0 0011222 3466
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|....+...+.+.+.. .+. +|+.+.+ ..||++ ..|++|+++..|+.
T Consensus 496 -~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~-~~~d~v-i~l~~g~~~~~g~~ 558 (576)
T TIGR02204 496 -PILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATV-LKADRI-VVMDQGRIVAQGTH 558 (576)
T ss_pred -CeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHH-HhCCEE-EEEECCEEEeeecH
Confidence 8999999999999998777777777664 233 3888665 569999 89999998877653
No 314
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.1e-15 Score=139.39 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=123.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.++....+.++.+|++++|+|++|||||||+++|+|.+ +|++|.|.++|.++..+.. .+.+|
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-----------~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-----------DPQQGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-----------CCCCCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 46788899999999999999999999999999999995 9999999999987755433 25666
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhc---ceeEEeecc----CCCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD---GIFHVLRAF----EDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d---~~l~vv~~~----~~~~~~~l~~------------~~~P~ 144 (263)
+.-.+.=++.||.-+..+...++ ...+.++.++ .+...=+.+ ++. =..++| -.|.
T Consensus 420 r~hlF~~Tlr~NL~lA~~~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LSGGE~rRLAlAR~LL~da- 493 (573)
T COG4987 420 RVHLFSGTLRDNLRLANPDASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLSGGERRRLALARALLHDA- 493 (573)
T ss_pred chHHHHHHHHHHHhhcCCCCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccC-CCcCCchHHHHHHHHHHHHcCC-
Confidence 64444678889888877654333 2333333332 211110000 000 001222 1222
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+.++|||+.+.|+..-++.++.+.+.. +++| |.+..+ +.||+| .+|++|+++..|...
T Consensus 494 -pl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~l-e~~drI-ivl~~Gkiie~G~~~ 557 (573)
T COG4987 494 -PLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL-ERMDRI-IVLDNGKIIEEGTHA 557 (573)
T ss_pred -CeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccH-hhcCEE-EEEECCeeeecCCHH
Confidence 4899999999999998888888777665 3443 988886 679999 999999999888654
No 315
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=2.5e-14 Score=115.32 Aligned_cols=180 Identities=14% Similarity=0.189 Sum_probs=117.7
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCCC-C
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS-A 85 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~~-~ 85 (263)
.-+.++.+..|+++-+|||||||||||+-.|+|+ .|-+|.|.+.|.++.. +++ .|..|. .
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~ 82 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQT 82 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCC------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhccC
Confidence 4467889999999999999999999999999999 6889999999988753 222 132222 3
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc---CCCc------eeeecccCCCchhHHHHHHHhhh
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF---EDPD------IIHVDDSVDPVRDLEVISAELRL 156 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~---~~~~------~~~l~~~~~P~~~i~ilde~~~~ 156 (263)
.++.|-++....++.+........+.+-..++.-|.+-..+... +... ++.+.-..+|...++++|||...
T Consensus 83 p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~ 162 (248)
T COG4138 83 PPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNS 162 (248)
T ss_pred CcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcc
Confidence 34467777777766655332222222222232223221111111 0001 11222246898899999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 157 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.|.......-..+.++...+.+ |++....+-++++ -.|..|+++..|..
T Consensus 163 LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~-wLL~rG~l~~~G~~ 216 (248)
T COG4138 163 LDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA-WLLKRGKLLASGRR 216 (248)
T ss_pred hhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHH-HHHhcCeEEeecch
Confidence 9988644433334455444432 9999999999999 88899999988764
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.54 E-value=1.7e-15 Score=133.63 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=107.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++.+|+++||+|+||||||||+++|+|+. +|+.|.|.++|. ++ |.++.......
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-----------~p~~G~I~i~g~----i~--yv~q~~~l~~~ 112 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-----------EPSEGKIKHSGR----IS--FSSQFSWIMPG 112 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCE----EE--EEeCccccccc
Confidence 45778899999999999999999999999999999994 899999999873 22 33444222234
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC---CCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE---DPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~---~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
++.|+..+...... .. ....+...+..+.+-.+-.... ......+++ ..+| +++++|||+.
T Consensus 113 tv~enl~~~~~~~~-~~-~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~iLiLDEPt~ 188 (282)
T cd03291 113 TIKENIIFGVSYDE-YR-YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA--DLYLLDSPFG 188 (282)
T ss_pred CHHHHhhcccccCH-HH-HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEECCCc
Confidence 77777765322110 00 0111111110000000000000 000011221 4567 8999999999
Q ss_pred hccHHHHHHHHHHH-HHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDV-EKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~-~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+.......+.+ .... .+. +|+...+ ..|+++ .+|.+|+++..|+.
T Consensus 189 gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~-~~~d~i-~~l~~G~i~~~g~~ 242 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHL-KKADKI-LILHEGSSYFYGTF 242 (282)
T ss_pred cCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99999877766644 3332 233 2998887 579999 89999998877654
No 317
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=4.3e-14 Score=127.40 Aligned_cols=104 Identities=37% Similarity=0.590 Sum_probs=89.6
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
+.++++.+...++-=.-|||||.||||||||||+|++....+++|||||+.|+.|.+.+.+. ..
T Consensus 144 ~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~ 207 (335)
T PRK12299 144 EPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY----------------KS 207 (335)
T ss_pred CCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC----------------cE
Confidence 45566666666666678999999999999999999998888899999999999999987431 25
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
++++|+||+....+...+++..++.+++.++++++|+|+.
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s 247 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIE 247 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCC
Confidence 8999999999888877788899999999999999999974
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3e-15 Score=143.12 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=112.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~ 89 (263)
.+....++.+|.+|+++||+|+||||||||+++|+|+. +|+.|.|.+++.. .++ |.++. ..+..
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~--~i~--~~~q~~~~~~~ 78 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-----------EPSAGNVSLDPNE--RLG--KLRQDQFAFEE 78 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEecCCC--EEE--EEeccCCcCCC
Confidence 45778899999999999999999999999999999994 7899999987632 122 33333 33445
Q ss_pred eehhhhhccccCc-c----------c-c---cchHHHHH------------HHHhhhcceeEEeeccC---CCceeeecc
Q 024748 90 LEIHDIAGLVRGA-H----------E-G---QGLGNSFL------------SHIRAVDGIFHVLRAFE---DPDIIHVDD 139 (263)
Q Consensus 90 l~~~d~~g~~~~~-~----------~-~---~~~~~~~~------------~~~~~~d~~l~vv~~~~---~~~~~~l~~ 139 (263)
+++.|++.+.... . . . ......+. +.-..++.++..++... +..+..+++
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 6777766542100 0 0 0 00000000 00011111111111110 111122332
Q ss_pred ------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCcc-
Q 024748 140 ------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDV- 201 (263)
Q Consensus 140 ------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~- 201 (263)
..+| +++++|||+...|+.......+.+.+ .+. +|+...+..+|+++ .+|++|+++
T Consensus 159 Gq~qrv~lA~aL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i-~~l~~g~i~~ 232 (530)
T PRK15064 159 GWKLRVLLAQALFSNP--DILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHM-ADLDYGELRV 232 (530)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceE-EEEeCCEEEE
Confidence 4678 89999999999999998887777654 222 39999999999999 999999984
Q ss_pred ccCCCC
Q 024748 202 RLGDWK 207 (263)
Q Consensus 202 ~~g~~~ 207 (263)
+.|+++
T Consensus 233 ~~g~~~ 238 (530)
T PRK15064 233 YPGNYD 238 (530)
T ss_pred ecCCHH
Confidence 666543
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=2.5e-15 Score=130.83 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=102.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceee-----------eCCcchHHHhh--
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ-- 78 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~-----------~~g~~~~~l~~-- 78 (263)
++...++ .+.+|++++|+|+||||||||+++|+|+. +|+.|.|. ++|..+.....
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-----------~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-----------KPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-----------CCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 5677777 58999999999999999999999999995 89999995 55655432110
Q ss_pred -------hcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 79 -------LFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 79 -------~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
.+.++.......++.+++....... .....+.+.++..+.- ..++ .....+++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~l~~~gl~-~~~~----~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKK---DERGKLDELVDQLELR-HVLD----RNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchh---HHHHHHHHHHHHcCCc-hhhc----CChhhCCHHHHHHHHHHHHH
Confidence 1112221000112223322211000 1112222223332210 0011 11111221
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
..+| ++.++|||+...|+.......+.+.+....+.+ |+...+..+||++ ..|. |.+...
T Consensus 155 ~~~p--~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i-~~l~-~~~~~~ 219 (255)
T cd03236 155 ARDA--DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYI-HCLY-GEPGAY 219 (255)
T ss_pred HhCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEC-CCCCcc
Confidence 3567 899999999999999888888888776544433 9999999999999 7775 656554
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.53 E-value=2.4e-15 Score=144.98 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=110.4
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcceeh
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEI 92 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~l~~ 92 (263)
...+++++..|+++||+|+||||||||+++|+|+ .+|+.|.|.++ . ...|.||. .....+++
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~-~-----~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV-----------LKPDEGEVDPE-L-----KISYKPQYIKPDYDGTV 417 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEe-e-----eEEEecccccCCCCCcH
Confidence 3456677899999999999999999999999999 48999999875 1 12244444 23456788
Q ss_pred hhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHH
Q 024748 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~ 160 (263)
.|++.+........ ....+.++..+. ....+..+..+++ +.+| +++++|||+...|+.
T Consensus 418 ~e~l~~~~~~~~~~---~~~~~~L~~l~l-----~~~~~~~~~~LSGGe~QRvaiAraL~~~p--~llLLDEPt~~LD~~ 487 (590)
T PRK13409 418 EDLLRSITDDLGSS---YYKSEIIKPLQL-----ERLLDKNVKDLSGGELQRVAIAACLSRDA--DLYLLDEPSAHLDVE 487 (590)
T ss_pred HHHHHHHhhhcChH---HHHHHHHHHCCC-----HHHHhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCCccCCCHH
Confidence 88876542211111 111122222211 0011111222332 4567 899999999999999
Q ss_pred HHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 161 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
......+.++++... +.+ |+...+..+||++ .+|+ |++...|..+
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrv-ivl~-~~~~~~g~~~ 538 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRL-MVFE-GEPGKHGHAS 538 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEc-CcceeeeecC
Confidence 999988888887543 333 9999999999998 7786 5776665544
No 321
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.53 E-value=4.1e-15 Score=126.34 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=104.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----------hhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----------~~~ 79 (263)
.+....+++++.+|++++|+|+||||||||+++|+|+. .|+.|.|.++|..+... ...
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-----------QTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-----------CCCCCeEEECCcccccccccccchhhcceEE
Confidence 45788899999999999999999999999999999994 78999999988754211 112
Q ss_pred cCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----C---CCceeeecc------------c
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----E---DPDIIHVDD------------S 140 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~---~~~~~~l~~------------~ 140 (263)
|.++.......++.|+..+...... ......++..+. ...++.. + +..+..+++ .
T Consensus 83 ~~~q~~~~~~~t~~~nl~~~~~~~~-----~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 83 YAAQKPWLLNATVEENITFGSPFNK-----QRYKAVTDACSL-QPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred EEcCCCccccccHHHHHhhcCcCCH-----HHHHHHHHHhCc-HHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 4555522225678887766432111 111111111111 0001100 0 001112222 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHH--HHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIE--DVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~--~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
.+| +++++|||+...|+...+...+ .+......+.+ |+...+. .||++ .+|.+|
T Consensus 157 ~~p--~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i-~~l~~G 217 (218)
T cd03290 157 QNT--NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWI-IAMKDG 217 (218)
T ss_pred hCC--CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEE-EEecCC
Confidence 667 8999999999999998877665 33333323333 8888774 68888 666655
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.53 E-value=3e-15 Score=119.31 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=90.7
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....++..+++|++++|+|+||||||||+++|+|+. +|++|.|.++|.. .+ .|.++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~~~~~--~i--~~~~~-------- 70 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-----------EPDEGIVTWGSTV--KI--GYFEQ-------- 70 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-----------CCCceEEEECCeE--EE--EEEcc--------
Confidence 5778889999999999999999999999999999994 8999999998741 00 01111
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~ 171 (263)
.+ .+++- .+.. .+++ ..+| ++.++|||+...|........+.+++
T Consensus 71 ----------lS----~G~~~--rv~l-------aral----------~~~p--~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 ----------LS----GGEKM--RLAL-------AKLL----------LENP--NLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred ----------CC----HHHHH--HHHH-------HHHH----------hcCC--CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 11 11111 1111 1111 1346 78888999999999988887777766
Q ss_pred Hhhh--ccchhHHHHHHHHHHHHHHhhcCC
Q 024748 172 SMKR--SNDKQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 172 ~~~~--~~~h~~~~i~~l~d~i~~~L~~G~ 199 (263)
.... -.+|+.+.+..+|+++ .+|++|+
T Consensus 116 ~~~til~~th~~~~~~~~~d~v-~~l~~g~ 144 (144)
T cd03221 116 YPGTVILVSHDRYFLDQVATKI-IELEDGK 144 (144)
T ss_pred cCCEEEEEECCHHHHHHhCCEE-EEEeCCC
Confidence 4210 1139999999999998 7777664
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.53 E-value=4.3e-15 Score=142.70 Aligned_cols=176 Identities=10% Similarity=0.046 Sum_probs=112.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....++..|.+|+++||+|+||||||||+++|+|+ ..|++|.|.+.+ .+ .++.+++....++..++
T Consensus 336 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~~-~~-~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-----------EQPDSGTIKIGE-TV-KLAYVDQSRDALDPNKT 402 (552)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEECC-ce-EEEEEeCCccccCCCCc
Confidence 456778999999999999999999999999999999 489999998844 21 23333332112455678
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~ 159 (263)
+.+++.+...............+.+..... -....+..+..+++ ..+| +++++|||+...|+
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGe~qrv~la~al~~~p--~lllLDEPt~~LD~ 476 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNF----KGSDQQKKVGQLSGGERNRVHLAKTLKSGG--NVLLLDEPTNDLDV 476 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCC----ChhHhcCchhhCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCH
Confidence 888876643211100001111122222211 00000111122332 4667 89999999999999
Q ss_pred HHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhc-CCcc-ccCCCC
Q 024748 160 EFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDWK 207 (263)
Q Consensus 160 ~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~-G~~~-~~g~~~ 207 (263)
...+...+.+.+... .-.+|+...+..+|+++ .+|++ |++. +.|++.
T Consensus 477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i-~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 477 ETLRALEEALLEFAGCAVVISHDRWFLDRIATHI-LAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEE-EEEECCCeEEEeCCCHH
Confidence 999888887776531 01239999999999999 78876 5655 446553
No 324
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=2.8e-15 Score=156.54 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=122.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-Hhh--hcCCCC-C
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LCQ--LFKPKS-A 85 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-l~~--~~~~~~-~ 85 (263)
+.+....+++.+++|+++||+|+||||||||+|+|+|.... -.|++|.|.++|+++.. +.. .|.+|. .
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~--------g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~ 846 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--------GVITGGDRLVNGRPLDSSFQRSIGYVQQQDL 846 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC--------CCcceeEEEECCEECChhhhcceeeeccccc
Confidence 35678889999999999999999999999999999999410 02678999999987632 111 255554 4
Q ss_pred CCcceehhhhhccccCccccc-----chHHHHHHHHhhhcc---eeEEeeccCCCceeeecc------------cCCCch
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVDG---IFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~-----~~~~~~~~~~~~~d~---~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
....+++.|++.+....+... .....+.+.++..+. .-..+.. .. ..+++ ..+|
T Consensus 847 ~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~---~~-~~LSgGqrqRl~Ia~aL~~~P-- 920 (1394)
T TIGR00956 847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV---PG-EGLNVEQRKRLTIGVELVAKP-- 920 (1394)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC---CC-CCCCHHHhhHHHHHHHHHcCC--
Confidence 456789999988754322110 111112222222211 0011110 00 01221 4567
Q ss_pred h-HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHH-HHHHHHHHHHHhhcC-CccccCCCCH
Q 024748 146 D-LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKI-EHELCQRVKAWLQDG-KDVRLGDWKA 208 (263)
Q Consensus 146 ~-i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~-i~~l~d~i~~~L~~G-~~~~~g~~~d 208 (263)
+ ++++|||+.+.|........+.+++....+.+ |+... +.+.||++ .+|.+| ++++.|+..+
T Consensus 921 ~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~v-l~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL-LLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEE-EEEcCCCEEEEECCccc
Confidence 7 89999999999999988888888887655543 98876 45789999 899987 9999887654
No 325
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=5.1e-15 Score=119.79 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=122.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------------- 74 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~---------------- 74 (263)
.+-+..++.+-..|..+.|||-+||||||++++|.=++ .|+.|.|.++|+.+.
T Consensus 19 ~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE-----------~P~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-----------KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc-----------CCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 45567889999999999999999999999999999885 899999999987541
Q ss_pred ------HHhhhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCc--eeeecc-------
Q 024748 75 ------WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDD------- 139 (263)
Q Consensus 75 ------~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~--~~~l~~------- 139 (263)
+++.+||... +...|++.+++--..-.-.+.. -.+++..+...+.-+...+..+ ..++++
T Consensus 88 ~~r~Rs~L~mVFQ~FN-LWsHmtvLeNViEaPvhVLg~~----k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a 162 (256)
T COG4598 88 LQRLRTRLGMVFQHFN-LWSHMTVLENVIEAPVHVLGVS----KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA 162 (256)
T ss_pred HHHHHHHhhHhhhhcc-hhHHHHHHHHHHhcchHhhcCC----HHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH
Confidence 2344455333 3446888777643221000100 0111122222222222222111 124443
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+..| +..++|||++.+|++.+-+.+..+.++.+.+.| |.|.....+...+ .+|++|.+-..|+.
T Consensus 163 IARaLameP--~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v-~fLh~G~iEE~G~P 236 (256)
T COG4598 163 IARALAMEP--EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHV-IFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHhcCC--ceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhhe-EEeecceecccCCh
Confidence 5678 899999999999999999999999998877765 9999999999999 99999988766654
No 326
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.52 E-value=6.4e-15 Score=141.88 Aligned_cols=175 Identities=17% Similarity=0.197 Sum_probs=120.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+-.+.++.++++|++++|+|+||||||||+++|+|++ +|.+|.|.++|.++..+.. .|.||
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-----------~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-----------EPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-----------CCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 45677889999999999999999999999999999995 8999999999988764321 37788
Q ss_pred CCCCcceehhhhhccccC-cccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRG-AHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~ 144 (263)
......-++.|++.+... ... ..++.+.++.+.+ +-.+-+.++.. .-..+++ ..+|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~- 488 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA- 488 (571)
T ss_pred CcccccccHHHHHhcCCCCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC-
Confidence 865567899999988753 211 1223333333321 00000000000 0001222 3566
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|....++..+.+.+.. .++ ||+... .+.||++ ..|++|++...|+
T Consensus 489 -~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~-~~~~D~i-i~l~~g~i~~~g~ 550 (571)
T TIGR02203 489 -PILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLST-IEKADRI-VVMDDGRIVERGT 550 (571)
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHH-HHhCCEE-EEEeCCEEEeeCC
Confidence 8999999999999998888777777653 223 388755 4779999 8889998876664
No 327
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=2.4e-14 Score=116.29 Aligned_cols=181 Identities=17% Similarity=0.249 Sum_probs=117.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------HhhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~~~~~ 81 (263)
..|-.++++++..|+.+||||.||||||||.++|+|. +.|++|+|.++|+.+.. +..+||
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-----------i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQ 94 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-----------cCCCCceEEECCccccccchHhhhhheeeeec
Confidence 4567789999999999999999999999999999999 69999999999987642 223355
Q ss_pred CCC-CCCcceehh---hhhccccCcccccchHHHHHHHHhhhcceeEEee-------ccCCCceeeecc--cCCCchhHH
Q 024748 82 PKS-AVPAFLEIH---DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLR-------AFEDPDIIHVDD--SVDPVRDLE 148 (263)
Q Consensus 82 ~~~-~~~~~l~~~---d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~-------~~~~~~~~~l~~--~~~P~~~i~ 148 (263)
... .+...+.+- |-|.-...........+++.+.++.+...-.-.. ......+. +.. ..+| +|.
T Consensus 95 Dpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa-LARALIL~P--~iI 171 (267)
T COG4167 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA-LARALILRP--KII 171 (267)
T ss_pred CCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH-HHHHHhcCC--cEE
Confidence 333 222233222 2221111111123445566666666644211111 11111110 111 3567 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+.|+.+...|+..+...+..+-++.++ +. +.+..-+..+.|.| .++++|+++..|+.
T Consensus 172 IaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~v-iVM~EG~vvE~G~t 234 (267)
T COG4167 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQV-LVMHEGEVVERGST 234 (267)
T ss_pred EehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccE-EEEecCceeecCCh
Confidence 999999999999888877776666543 22 25666777889999 99999999888764
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=3.5e-15 Score=143.36 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=112.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC--CCCcc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS--AVPAF 89 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~--~~~~~ 89 (263)
+....++..|.+|+++||+|+||||||||+++|+|+ .+|+.|.|.+.+ .+ .++ |.|+. .++..
T Consensus 338 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~-~~-~i~--~v~q~~~~~~~~ 402 (556)
T PRK11819 338 LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-----------EQPDSGTIKIGE-TV-KLA--YVDQSRDALDPN 402 (556)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECC-ce-EEE--EEeCchhhcCCC
Confidence 466778999999999999999999999999999999 489999999853 21 222 44443 34556
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhc
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 157 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~ 157 (263)
+++.+++.+.................++..+. -....+..+..+++ ..+| +++++|||+...
T Consensus 403 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEPt~~L 476 (556)
T PRK11819 403 KTVWEEISGGLDIIKVGNREIPSRAYVGRFNF----KGGDQQKKVGVLSGGERNRLHLAKTLKQGG--NVLLLDEPTNDL 476 (556)
T ss_pred CCHHHHHHhhcccccccccHHHHHHHHHhCCC----ChhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCC
Confidence 88888876643211100001111122222221 00000111112222 4567 899999999999
Q ss_pred cHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhc-CCcc-ccCCCC
Q 024748 158 DIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDWK 207 (263)
Q Consensus 158 d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~-G~~~-~~g~~~ 207 (263)
|+...+...+.+.+... .-.+|+...+..+|+++ .+|++ |++. +.|+++
T Consensus 477 D~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i-~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 477 DVETLRALEEALLEFPGCAVVISHDRWFLDRIATHI-LAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEE-EEEECCCeEEEecCCHH
Confidence 99998888887776521 01239999999999999 88875 6655 446553
No 329
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=7.7e-15 Score=153.28 Aligned_cols=188 Identities=14% Similarity=0.089 Sum_probs=125.3
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh------hhcCC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKP 82 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~------~~~~~ 82 (263)
........+++.+++|+.++|+|+||||||||+|+|+|.... ...|.+|.|.++|..+.... ..|.+
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-------~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~ 144 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-------FHIGVEGVITYDGITPEEIKKHYRGDVVYNA 144 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-------CCCCceeEEEECCEehHHHHhhcCceeEEec
Confidence 345678899999999999999999999999999999998410 01468999999998765322 12555
Q ss_pred CC-CCCcceehhhhhccccCcccc----cch-HH----HHHH-HHhhhcceeEEeecc-CCCceeeecc-----------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEG----QGL-GN----SFLS-HIRAVDGIFHVLRAF-EDPDIIHVDD----------- 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~----~~~-~~----~~~~-~~~~~d~~l~vv~~~-~~~~~~~l~~----------- 139 (263)
|. .....+++.|++.+....... ... .. ...+ .++..+. -+..+.. .+..+..+++
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~~t~vg~~~~~~LSGGerkRvsIA~a 223 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-SHTRNTKVGNDFVRGVSGGERKRVSIAEA 223 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-ccccCceeCCCcCCCCCcccchHHHHHHH
Confidence 54 445679999998775322110 001 01 1111 1121111 0111100 0111112332
Q ss_pred -cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhH-HHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQL-KIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 -~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~-~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
..+| +++++|||+.+.|.....+..+.++++... +.+ |+. ..+.+++|++ .+|.+|++++.|+.+
T Consensus 224 L~~~p--~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v-~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 224 SLGGA--KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV-IVLYEGYQIYFGPAD 296 (1394)
T ss_pred HHhCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE-EEEeCCeEEEECCHH
Confidence 4567 899999999999999999988888887643 443 875 7899999999 999999999988754
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=5.8e-15 Score=141.86 Aligned_cols=179 Identities=14% Similarity=0.153 Sum_probs=114.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~ 89 (263)
.+....++.+|.+|+++||+|+||||||||+++|+|+. .|+.|.|.+++.. .++ |.+|. .++..
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-----------~p~~G~i~~~~~~--~i~--~v~Q~~~~~~~ 84 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-----------KEFEGEARPAPGI--KVG--YLPQEPQLDPE 84 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEecCCC--EEE--EEecCCCCCCC
Confidence 56788999999999999999999999999999999994 7999999886421 122 33443 33446
Q ss_pred eehhhhhccccCcc--------------c-c-cchH------HHHHHHH---------hhhcceeEEeecc-CCCceeee
Q 024748 90 LEIHDIAGLVRGAH--------------E-G-QGLG------NSFLSHI---------RAVDGIFHVLRAF-EDPDIIHV 137 (263)
Q Consensus 90 l~~~d~~g~~~~~~--------------~-~-~~~~------~~~~~~~---------~~~d~~l~vv~~~-~~~~~~~l 137 (263)
+++.|++.+..... . . .... ..+.+.+ +.++.++..+... .+..+..+
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~L 164 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKL 164 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhc
Confidence 78888876532100 0 0 0000 0000000 0111111111110 01112223
Q ss_pred cc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHhhcCCcc-c
Q 024748 138 DD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR--SNDKQLKIEHELCQRVKAWLQDGKDV-R 202 (263)
Q Consensus 138 ~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~--~~~h~~~~i~~l~d~i~~~L~~G~~~-~ 202 (263)
++ ..+| +++++|||+...|+.......+.+.+.... -.+|+.+.+..+|+++ .+|++|+++ +
T Consensus 165 SgGqkqrv~la~al~~~p--~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i-~~l~~g~i~~~ 241 (556)
T PRK11819 165 SGGERRRVALCRLLLEKP--DMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI-LELDRGRGIPW 241 (556)
T ss_pred CHHHHHHHHHHHHHhCCC--CEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE-EEEeCCEEEEe
Confidence 32 4678 899999999999999988877777765310 1139999999999999 999999976 5
Q ss_pred cCCCC
Q 024748 203 LGDWK 207 (263)
Q Consensus 203 ~g~~~ 207 (263)
.|+++
T Consensus 242 ~g~~~ 246 (556)
T PRK11819 242 EGNYS 246 (556)
T ss_pred cCCHH
Confidence 56654
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.9e-15 Score=145.99 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=107.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCC-CCCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPK-SAVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~-~~~~~~ 89 (263)
.+....++++|.+|+++||+|+||||||||+++|+|. ..|++|.|.+.+.. .++++++.. ..+...
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~--~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-----------LAPVSGEIGLAKGI--KLGYFAQHQLEFLRAD 391 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCCE--EEEEecCcchhhCCcc
Confidence 3456788999999999999999999999999999999 48999999986321 122222211 111222
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhc
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 157 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~ 157 (263)
.++.+....... . .....+...+..... -....+..+..+++ ..+| +++++|||+...
T Consensus 392 ~~~~~~~~~~~~---~-~~~~~~~~~L~~~~l----~~~~~~~~~~~LSgGekqRl~La~~l~~~p--~lLlLDEPt~~L 461 (638)
T PRK10636 392 ESPLQHLARLAP---Q-ELEQKLRDYLGGFGF----QGDKVTEETRRFSGGEKARLVLALIVWQRP--NLLLLDEPTNHL 461 (638)
T ss_pred chHHHHHHHhCc---h-hhHHHHHHHHHHcCC----ChhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCC
Confidence 334443211000 0 001111222222211 00000111122232 4567 899999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 158 DIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 158 d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
|+...+...+.+.+.. +. +|+...+..+|+++ .+|.+|++. +.|+++
T Consensus 462 D~~~~~~l~~~L~~~~--gtvi~vSHd~~~~~~~~d~i-~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 462 DLDMRQALTEALIDFE--GALVVVSHDRHLLRSTTDDL-YLVHDGKVEPFDGDLE 513 (638)
T ss_pred CHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHhCCEE-EEEECCEEEEcCCCHH
Confidence 9999988888777652 21 39999999999999 899999987 667665
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.8e-15 Score=137.17 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=124.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+-.+.++++|++|++|||+|+|||||||++|+|.++. + .+|.|.++|++++.+.. .|.||
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-----------d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-----------D-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-----------c-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 44678999999999999999999999999999999994 5 99999999999876432 38999
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhc---ceeEEeeccCCC---ceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD---GIFHVLRAFEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d---~~l~vv~~~~~~---~~~~l~~------------~~~P~~ 145 (263)
+...++=++..++.++...... ..+.+..+.++ .+...=+.+... .-.++++ ..||
T Consensus 433 d~~LFndTIl~NI~YGn~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda-- 506 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA-- 506 (591)
T ss_pred cccccchhHHHHhhcCCCCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC--
Confidence 9766678888888887654332 22333333332 222221221100 0123333 2456
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.|.++||++...|.+.-.+.++.+.+.. .++| |+...+ +-||+| .+|++|++.-.|+.+
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~ll-~~~DkI-~~l~nG~v~e~gth~ 570 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLDLL-KDFDKI-IVLDNGTVKEYGTHS 570 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecchhH-hcCCEE-EEEECCeeEEeccHH
Confidence 7999999999999887667677666633 3344 777765 678999 999999998887654
No 333
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=1.2e-13 Score=127.76 Aligned_cols=102 Identities=37% Similarity=0.586 Sum_probs=86.3
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceeh
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~ 92 (263)
+++.+...++-=--|||||.||||||||||+|++....++++||||+.|+.|.+.+++. ..+.+
T Consensus 147 e~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~l 210 (424)
T PRK12297 147 EERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVM 210 (424)
T ss_pred eEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC----------------ceEEE
Confidence 34444444555558999999999999999999999888899999999999999887631 25899
Q ss_pred hhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+|+||+....+...+++..++.+++.++++++|+|+.+
T Consensus 211 aD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 211 ADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred EECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 99999998777777889999999999999999999853
No 334
>PLN03140 ABC transporter G family member; Provisional
Probab=99.51 E-value=1.2e-14 Score=151.88 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=126.1
Q ss_pred CCCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---cceeeeCCcchHHHh----h
Q 024748 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----Q 78 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~---~G~i~~~g~~~~~l~----~ 78 (263)
+|.........+++.+++|+.++|+||||||||||+|+|+|.. +|+ .|.|.++|.++.... .
T Consensus 173 ~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-----------~~~~~~~G~I~~nG~~~~~~~~~~~i 241 (1470)
T PLN03140 173 AKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-----------DPSLKVSGEITYNGYRLNEFVPRKTS 241 (1470)
T ss_pred CCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----------CCCCcceeEEEECCEechhhccccee
Confidence 4555677899999999999999999999999999999999994 666 899999998764321 1
Q ss_pred hcCCCC-CCCcceehhhhhccccCccc-cc------ch--HHH------------HHHH--------HhhhcceeEEeec
Q 024748 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE-GQ------GL--GNS------------FLSH--------IRAVDGIFHVLRA 128 (263)
Q Consensus 79 ~~~~~~-~~~~~l~~~d~~g~~~~~~~-~~------~~--~~~------------~~~~--------~~~~d~~l~vv~~ 128 (263)
.|.+|. .....+++.|++.+...... +. .. ..+ +... -..++.++..+..
T Consensus 242 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred EEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 355555 44567999999987542211 00 00 000 0000 0001222221111
Q ss_pred cC-------CCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhH-H
Q 024748 129 FE-------DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQL-K 182 (263)
Q Consensus 129 ~~-------~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~-~ 182 (263)
.+ +..+..+++ ..+| +++++|||+.++|........+.+++.... +.+ |+. .
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p--~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~ 399 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPT--KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP 399 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCC--cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH
Confidence 10 111111221 3567 899999999999999998888888887543 333 774 6
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCC
Q 024748 183 IEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 183 ~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+.+++|++ .+|.+|++++.|+.+
T Consensus 400 ~i~~lfD~v-ilL~~G~ivy~G~~~ 423 (1470)
T PLN03140 400 ETFDLFDDI-ILLSEGQIVYQGPRD 423 (1470)
T ss_pred HHHHHhheE-EEeeCceEEEeCCHH
Confidence 889999999 999999999988653
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=3.5e-14 Score=113.75 Aligned_cols=170 Identities=15% Similarity=0.082 Sum_probs=110.8
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---------Hhhh
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQL 79 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---------l~~~ 79 (263)
.+.+-.+.++..+.+|+.++|.||+|||||||+++++.+ +.|+.|.+.+.|+.+.. +++.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 456778889999999999999999999999999999999 58999999999987642 2333
Q ss_pred cCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
.|.... +.=++.|+.-|....+....-...+++.+..++.--..++ .++..++| ..-| +|
T Consensus 83 ~Q~paL--fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P--~I 154 (223)
T COG4619 83 AQTPAL--FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMP--KI 154 (223)
T ss_pred HcCccc--cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCC--ce
Confidence 332222 2357788877765444332223344444444442111111 11222222 2446 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHh-hhcc-----chhHHHHHHHHHHHHHHhhcC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSM-KRSN-----DKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~-~~~~-----~h~~~~i~~l~d~i~~~L~~G 198 (263)
+++||++...|....++.-+.+-+.. ++.. ||+.+...+.++++ .-+..|
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~-itl~~G 210 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKV-ITLQPG 210 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheE-EEeccC
Confidence 99999999999887666555555554 2222 38887777777766 444434
No 336
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.51 E-value=1.8e-13 Score=123.13 Aligned_cols=105 Identities=36% Similarity=0.591 Sum_probs=88.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
+.++++.+...++.=.-|+|||.+|||||||||.|++....+++|||||+.|+.|.+.+.+. ..
T Consensus 143 ~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~----------------~~ 206 (329)
T TIGR02729 143 EPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG----------------RS 206 (329)
T ss_pred CCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc----------------eE
Confidence 34455555555666678999999999999999999998877899999999999999987641 25
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
++++|+||+....+...++...++.+++.++.+++|+|+.+
T Consensus 207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 89999999988877767788899999999999999999754
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=7.3e-15 Score=139.16 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=107.7
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ccceeeeCCcchH------HH--hhhcCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFE------WL--CQLFKP 82 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-~~G~i~~~g~~~~------~l--~~~~~~ 82 (263)
.....+++.+.+|+++||+|+||||||||+++|+|.. ++ +.|.|.++|+.+. .. ...|.+
T Consensus 274 ~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 342 (490)
T PRK10938 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-----------PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVS 342 (490)
T ss_pred eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-----------CcccCCeEEEecccCCCCCCHHHHHhhceEEC
Confidence 4567889999999999999999999999999999973 44 6899999886431 01 112334
Q ss_pred CCC-C-C-cceehhhhhccc--cC--ccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 83 KSA-V-P-AFLEIHDIAGLV--RG--AHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 83 ~~~-~-~-~~l~~~d~~g~~--~~--~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
+.. . + ...++.++.... .. ... .......+.+.++..+. -....+..+..+++ ..
T Consensus 343 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 343 SSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI----DKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred HHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC----chhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 331 1 1 123444443211 10 000 00001122222233221 00011111112222 46
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc------chhHHHHHH-HHHHHHHHhhcCCcccc
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHE-LCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~------~h~~~~i~~-l~d~i~~~L~~G~~~~~ 203 (263)
+| +++++|||+...|+...+...+.+.+....+. +|+.+.+.+ +|+++ .+|++|+++..
T Consensus 419 ~p--~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v-~~l~~G~i~~~ 484 (490)
T PRK10938 419 HP--TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL-EFVPDGDIYRY 484 (490)
T ss_pred CC--CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE-EEecCCceEEe
Confidence 78 89999999999999999998888887764432 299999987 58988 89999987765
No 338
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.50 E-value=7.3e-15 Score=142.08 Aligned_cols=175 Identities=16% Similarity=0.188 Sum_probs=120.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|++ +|+.|.|.++|.++..+.. .|.||
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-----------~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-----------DPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 35688889999999999999999999999999999995 8999999999987764321 37777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCC---Cceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~---~~~~~l~~------------~~~P~~ 145 (263)
...-..-++.|+..+....... ..+...++.+.. +-.+=+.++. ..-..+++ ..+|
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~-- 490 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP-- 490 (588)
T ss_pred CcccccccHHHHHhcCCCCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 7555567999999887532211 122222222211 1000000000 00011222 3567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|....++..+.+.+.. .++ ||+.+.+ +.||++ ..|++|++...|+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~-~~~D~i-i~l~~G~i~~~g~ 552 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTV-RNADRI-LVFDNGRVVESGS 552 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 8999999999999998888777777653 233 3888765 679999 9999999887665
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.50 E-value=1e-14 Score=153.57 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=122.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+....++.+|++|+++||||++|||||||+++|+|++ +|++|.|.++|.++..+.. .+.||
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-----------~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-----------ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------cCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 46788999999999999999999999999999999995 8999999999988765322 27788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-CCc--e----eeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-DPD--I----IHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~--~----~~l~~------------~~~P~ 144 (263)
+..-..-++.|+..+..... ..++.++++.+.+- ..+.... ..+ + ..+++ ..+|
T Consensus 1318 dp~LF~gTIr~NL~~~~~~s-----deei~~al~~a~l~-~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~- 1390 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHN-----DADLWEALERAHIK-DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS- 1390 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCC-----HHHHHHHHHHcCCH-HHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC-
Confidence 85545668999987654221 22334444444321 0111110 000 0 01222 2456
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++||++...|.+.-+...+.+++.. .+.| |..+.+.. ||+| .+|++|+++..|+..
T Consensus 1391 -~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrI-lVL~~G~ivE~Gt~~ 1454 (1495)
T PLN03232 1391 -KILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID-CDKI-LVLSSGQVLEYDSPQ 1454 (1495)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEE-EEEECCEEEEECCHH
Confidence 8999999999999987666666666543 3333 99988865 9999 999999999887644
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.50 E-value=5.4e-15 Score=141.99 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~ 89 (263)
.+....++..|.+|+++||+|+||||||||+++|+|+. +|+.|.|.+++. ..++ |.+|. .++..
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-----------~p~~G~i~~~~~--~~i~--~v~Q~~~~~~~ 82 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-----------KEFNGEARPAPG--IKVG--YLPQEPQLDPT 82 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEecCC--CEEE--EEeccCCCCCC
Confidence 45788999999999999999999999999999999994 899999988652 1122 33443 33446
Q ss_pred eehhhhhccccCcc---------------c-ccc------hHHHHHHHHhhhc---------ceeEEeecc-CCCceeee
Q 024748 90 LEIHDIAGLVRGAH---------------E-GQG------LGNSFLSHIRAVD---------GIFHVLRAF-EDPDIIHV 137 (263)
Q Consensus 90 l~~~d~~g~~~~~~---------------~-~~~------~~~~~~~~~~~~d---------~~l~vv~~~-~~~~~~~l 137 (263)
+++.|++.+..... . ... ....+.+.+..++ .++..+... .+..+..+
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L 162 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL 162 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence 78888876532100 0 000 0001111111111 111111110 01112233
Q ss_pred cc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHhhcCCcc-c
Q 024748 138 DD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR--SNDKQLKIEHELCQRVKAWLQDGKDV-R 202 (263)
Q Consensus 138 ~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~--~~~h~~~~i~~l~d~i~~~L~~G~~~-~ 202 (263)
++ ..+| +++++|||+...|+...+...+.+.+.... -.+|+.+.+..+||++ .+|++|+++ +
T Consensus 163 SgGqkqrv~la~al~~~p--~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v-~~l~~g~i~~~ 239 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKP--DMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI-LELDRGRGIPW 239 (552)
T ss_pred CHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE-EEEECCEEEEe
Confidence 33 4678 899999999999999988877777654210 1139999999999999 999999875 5
Q ss_pred cCCCC
Q 024748 203 LGDWK 207 (263)
Q Consensus 203 ~g~~~ 207 (263)
.|+++
T Consensus 240 ~g~~~ 244 (552)
T TIGR03719 240 EGNYS 244 (552)
T ss_pred cCCHH
Confidence 57654
No 341
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.50 E-value=4.4e-15 Score=138.98 Aligned_cols=180 Identities=18% Similarity=0.178 Sum_probs=118.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-------------h
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------------C 77 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-------------~ 77 (263)
..+.+.++.++.+|+++||||.+||||||+.++|.|+... . .....|+|.++|+++..+ +
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~------~-~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia 94 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE------G-GRITSGEVILDGRDLLGLSEREMRKLRGKRIA 94 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC------C-CcccceEEEECCcchhcCCHHHHHHhccccEE
Confidence 3578999999999999999999999999999999999521 0 022479999999765332 2
Q ss_pred hhcCCCC-CCCcceehhhh----hccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCCceeeecc----------
Q 024748 78 QLFKPKS-AVPAFLEIHDI----AGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 78 ~~~~~~~-~~~~~l~~~d~----~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~~~~~l~~---------- 139 (263)
.+||... .+..-+++-+- ...+.... ......++.+.++.+.. ..+ +.|- ..++|
T Consensus 95 ~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~-~~ea~~~a~elL~~Vgl~~~~~~--~~yP----heLSGG~rQRv~iAm 167 (539)
T COG1123 95 MIFQDPMTSLNPVMTIGDQIREALRLHGKGS-RAEARKRAVELLEQVGLPDPERR--DRYP----HQLSGGMRQRVMIAM 167 (539)
T ss_pred EEecCchhhcCchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHcCCCChhhh--ccCC----cccCchHHHHHHHHH
Confidence 2233221 22222333322 22222111 11122233333333321 111 1111 12333
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+.+| ++++.|||+..+|+......++.++++... +. ||++.-+.++|||+ .+|+.|+++..|+.+
T Consensus 168 ALa~~P--~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv-~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 168 ALALKP--KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRV-VVMYKGEIVETGPTE 240 (539)
T ss_pred HHhCCC--CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeE-EEEECCEEEEecCHH
Confidence 6789 899999999999999999999988888743 22 39999999999999 999999999888654
No 342
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.50 E-value=6.1e-15 Score=144.00 Aligned_cols=177 Identities=14% Similarity=0.059 Sum_probs=119.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H----h--hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L----C--QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l----~--~~ 79 (263)
.+....+++.+++|++++|+|+||||||||+++|+|+. +|+.|++.++|+++.. + . ..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-----------~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 89 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-----------KPTSGTYRVAGQDVATLDADALAQLRREHFG 89 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEcCcCCHHHHHHHHhccEE
Confidence 35788999999999999999999999999999999994 8999999999976532 1 0 12
Q ss_pred cCCCC-CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.++. .++..+++.|+..+...... . ......+.+.++..+.- +.+ +.....+++ ..+|
T Consensus 90 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~----~~~~~~LS~Gq~qrv~LAraL~~~P- 163 (648)
T PRK10535 90 FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRV----EYQPSQLSGGQQQRVSIARALMNGG- 163 (648)
T ss_pred EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhh----cCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 44444 33445777777654321111 0 01111222222222210 111 111112222 4678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++.++|||+...|....+...+.+++....+.+ |+.+.+. .||++ .+|++|++...++.+
T Consensus 164 -~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 164 -QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERV-IEIRDGEIVRNPPAQ 228 (648)
T ss_pred -CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEE-EEEECCEEEeecCcc
Confidence 899999999999999999988888876544433 9988775 69999 999999998877654
No 343
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-14 Score=133.98 Aligned_cols=177 Identities=16% Similarity=0.198 Sum_probs=124.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (263)
++..+++.++++|++++|||++|||||||+++|+|+. .|+.|+|.++|.++..+. -.+.+|+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-----------~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-----------APTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-----------CCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 7899999999999999999999999999999999994 889999999998776543 2377777
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCc--e----eeecc-----------cCCCchhH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--I----IHVDD-----------SVDPVRDL 147 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~--~----~~l~~-----------~~~P~~~i 147 (263)
..-..=++.||+.+....... +...+.++.+.. ...++.-+.-+ + ..+++ ..+| .++
T Consensus 404 p~lf~gTireNi~l~~~~~s~----e~i~~al~~a~l-~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~-~~l 477 (559)
T COG4988 404 PYLFAGTIRENILLARPDASD----EEIIAALDQAGL-LEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP-ASL 477 (559)
T ss_pred CccccccHHHHhhccCCcCCH----HHHHHHHHHhcH-HHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC-CCE
Confidence 555567899999988765322 223333333321 11122100000 0 01121 1233 389
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++|||+...|.+.-+...+.+.+..+... ||.+..+ .-+|+| .+|++|+++..|..+
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~-~~~D~I-~vld~G~l~~~g~~~ 539 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA-ADADRI-VVLDNGRLVEQGTHE 539 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHH-hcCCEE-EEecCCceeccCCHH
Confidence 999999999999987776777777664322 2887775 678999 999999999887654
No 344
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.9e-15 Score=122.55 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=114.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh----------hc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~----------~~ 80 (263)
++=++.++.+|+.|++.+|+||||||||||.++|+|... .+++.|.|.++|+++..+.- .|
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLaf 87 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDILELSPDERARAGIFLAF 87 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCcccccCCHhHHHhcCCEEee
Confidence 477899999999999999999999999999999999842 47889999999998754221 13
Q ss_pred CCCCCCCcceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCce-eeecc------------cCCCchh
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI-IHVDD------------SVDPVRD 146 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~-~~l~~------------~~~P~~~ 146 (263)
|-...++ .+++.+..-....... .......|...++.+-..+.+-..|-+..+ .-+++ ..+| +
T Consensus 88 Q~P~ei~-GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP--k 164 (251)
T COG0396 88 QYPVEIP-GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP--K 164 (251)
T ss_pred cCCccCC-CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC--C
Confidence 3222222 4555554433221111 111112333333222221221111111110 01121 4678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHH-HHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELC-QRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~-d~i~~~L~~G~~~~~g~~ 206 (263)
+.++||+-++.|+..++-..+-+..++..+. ||...-...+- |++ .+|-+|+++..|..
T Consensus 165 l~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v-hvl~~GrIv~sG~~ 229 (251)
T COG0396 165 LAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV-HVLYDGRIVKSGDP 229 (251)
T ss_pred EEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE-EEEECCEEEecCCH
Confidence 9999999999999988887777777765543 37655544333 555 77888999998764
No 345
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=2.3e-14 Score=138.61 Aligned_cols=185 Identities=13% Similarity=0.097 Sum_probs=128.7
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--Hhh--hcCCCC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQ--LFKPKS 84 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~~--~~~~~~ 84 (263)
+.+.-.+.++|.+++|+..||+|++|||||||+|+|+|.... --..+|.|.++|++... ... .|.+|.
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~--------~~~~~G~ilvNG~~~~~~~~~~~s~yV~Qd 112 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG--------GLKLSGEILLNGRPRDSRSFRKISGYVQQD 112 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC--------CCcceEEEEECCccCchhhhhheeEEEccc
Confidence 356678899999999999999999999999999999999521 02468999999954321 111 255555
Q ss_pred -CCCcceehhhhhccccCcccccc--------hHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCC
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQG--------LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDP 143 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~--------~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P 143 (263)
.+...+||.|+..+......+.. ..+.+...+...++.--++.. ....-+++ ..||
T Consensus 113 D~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~---~~~rgiSGGErkRvsia~Ell~~P 189 (613)
T KOG0061|consen 113 DVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN---PGIRGLSGGERKRVSIALELLTDP 189 (613)
T ss_pred ccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC---CCCCccccchhhHHHHHHHHHcCC
Confidence 66779999999988764443221 112222222211111111210 00001111 5788
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hh-HHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQ-LKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~-~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.++++|||+.++|.....+..+.+++++..+.+ |+ ...+-.+.|++ .+|.+|+.+|.|+..
T Consensus 190 --~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l-~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 190 --SILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKL-LLLSEGEVVYSGSPR 256 (613)
T ss_pred --CEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHh-hhhcCCcEEEecCHH
Confidence 799999999999999888888988888866655 66 45788999999 999999999999864
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.47 E-value=1.5e-14 Score=152.72 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=122.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+....++.+|++|+++||||++|||||||+++|+|++ +|++|.|.++|.++..+. . .+.||
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-----------~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-----------ELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-----------CCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 36788999999999999999999999999999999995 899999999998875432 1 27788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-CCc--e----eeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-DPD--I----IHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~--~----~~l~~------------~~~P~ 144 (263)
......-++.|+........ ..++.++++.+.+- ..+.... ..+ + ..+++ ..+|
T Consensus 1321 dp~LF~GTIreNLd~~~~~t-----deei~~Al~~a~l~-~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p- 1393 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHN-----DADLWESLERAHLK-DVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS- 1393 (1622)
T ss_pred CCccccccHHHHhCcCCCCC-----HHHHHHHHHHcCcH-HHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC-
Confidence 85555668999987654221 23344444444321 0111110 000 0 01221 3456
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|+++||++...|.+.-+...+.+++.. .+.| |..+.+.. ||+| .+|++|+++..|+..
T Consensus 1394 -~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~-~DrI-lVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1394 -KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI-LVLDAGRVVEFDTPE 1457 (1622)
T ss_pred -CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHh-CCEE-EEEECCEEEEeCCHH
Confidence 8999999999999988666666666553 3333 99998865 9999 999999998877543
No 347
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=1.7e-14 Score=116.32 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....+++.+.+|++++|+|+||||||||+++|+|.. +|+.|+++++|..+..... ..
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-----------~~~~G~i~~~~~~~~~~~~-----------~~ 70 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-----------KPTSGEILIDGKDIAKLPL-----------EE 70 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCccEEEECCEEcccCCH-----------HH
Confidence 5678889999999999999999999999999999994 8899999999865321100 00
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHH
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~ 171 (263)
+....++....+. +++-.-.+ .+++ +.+| ++.++|||+...|........+.+.+
T Consensus 71 ~~~~i~~~~qlS~----G~~~r~~l---------~~~l----------~~~~--~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 71 LRRRIGYVPQLSG----GQRQRVAL---------ARAL----------LLNP--DLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred HHhceEEEeeCCH----HHHHHHHH---------HHHH----------hcCC--CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 0000111111111 11110001 1110 1235 78888999999999988887787776
Q ss_pred Hhhhcc-----chhHHHHHHHHHHHHHHhhcC
Q 024748 172 SMKRSN-----DKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 172 ~~~~~~-----~h~~~~i~~l~d~i~~~L~~G 198 (263)
....+. +|+.+.+..+||++ .++.+|
T Consensus 126 ~~~~~~tii~~sh~~~~~~~~~d~i-~~l~~g 156 (157)
T cd00267 126 LAEEGRTVIIVTHDPELAELAADRV-IVLKDG 156 (157)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEE-EEEeCc
Confidence 654322 29999999999988 666554
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.47 E-value=2.5e-14 Score=135.54 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=108.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC-cchHHHhhhcCCCC-CCCc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKS-AVPA 88 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g-~~~~~l~~~~~~~~-~~~~ 88 (263)
.+=...++.++.+|+++||||+|||||||||++|+|.. .|+.|.|.... .++. |.+|. ..+.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-----------~~~~G~i~~~~~~~v~-----~l~Q~~~~~~ 79 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-----------EPDSGEVTRPKGLRVG-----YLSQEPPLDP 79 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-----------cCCCCeEeecCCceEE-----EeCCCCCcCC
Confidence 45567789999999999999999999999999999994 89999998864 2332 33333 2223
Q ss_pred ceehhhhhccccCcccc-----cch-----------HHHHHHHHhhh---------cceeEEeeccC-CCceeeecc---
Q 024748 89 FLEIHDIAGLVRGAHEG-----QGL-----------GNSFLSHIRAV---------DGIFHVLRAFE-DPDIIHVDD--- 139 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~-----~~~-----------~~~~~~~~~~~---------d~~l~vv~~~~-~~~~~~l~~--- 139 (263)
..++.|.+-........ ... ...+....... ..++.-+.... +..+..+++
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 44666655433211000 000 00000000111 11111111111 122333443
Q ss_pred ---------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 140 ---------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 140 ---------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
..+| |++++|||+.-+|++.++-..+.+.+... .-.+|+...+.++|++| ..|+.|++. |.|.++
T Consensus 160 ~Rv~LA~aL~~~p--DlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I-~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEP--DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHI-LELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhhe-EEecCCceeEecCCHH
Confidence 4567 99999999999999877665555544321 00139999999999999 999999876 447775
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=1.9e-14 Score=138.87 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=100.4
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceee-----------eCCcchHHHhh---
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ--- 78 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~-----------~~g~~~~~l~~--- 78 (263)
++.+++ .+++|+++||+|+||||||||+|+|+|+ ..|+.|.|. ++|.++.....
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 567777 8999999999999999999999999999 489999997 77766543211
Q ss_pred ------hcCCCCCC-Cc---ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc---------
Q 024748 79 ------LFKPKSAV-PA---FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD--------- 139 (263)
Q Consensus 79 ------~~~~~~~~-~~---~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~--------- 139 (263)
.+.++... .. ..++.|+.... .....+.+.++..+. ....+..+..+++
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-------~~~~~~~~~l~~l~l-----~~~~~~~~~~LSgGe~qrv~ia 224 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-------DERGKLDEVVERLGL-----ENILDRDISELSGGELQRVAIA 224 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh-------hHHHHHHHHHHHcCC-----chhhcCChhhCCHHHHHHHHHH
Confidence 11122100 00 01222322110 000111112222211 0001111222332
Q ss_pred ---cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcC
Q 024748 140 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 140 ---~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G 198 (263)
+.+| +++++|||+..+|+.......+.+.++.. +.+ |+++.+..+||++ .+|..+
T Consensus 225 ~al~~~p--~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v-~vl~~~ 287 (590)
T PRK13409 225 AALLRDA--DFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNV-HIAYGE 287 (590)
T ss_pred HHHhcCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE-EEEeCC
Confidence 4678 89999999999999999998888888765 543 9999999999999 888653
No 350
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.47 E-value=3.4e-14 Score=135.73 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=110.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
++....++.++++|++++|+|+||||||||+|+|+|++ +|+.|.|.++|.++..+. -.|.+|
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----------~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-----------DPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 46788899999999999999999999999999999995 899999999998775432 136777
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----CC---Cceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----ED---PDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~~---~~~~~l~~------------~~~P~ 144 (263)
......-++.|+..+....... +++.+.++.+..- ..++.+ +. ..-..+++ ..+|
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~----~~i~~a~~~~~l~-~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~- 477 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASD----AEIRRALERAGLD-EFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA- 477 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCH----HHHHHHHHHcCcH-HHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC-
Confidence 7554567999999876532211 2233333333210 111111 00 00112332 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
+++++||++...|....++..+.+.+.. .+.| |..+.+ +.||++
T Consensus 478 -~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i 526 (529)
T TIGR02857 478 -PLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALA-ERADRI 526 (529)
T ss_pred -CEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHH-HhCCEE
Confidence 8999999999999998888777777654 3333 888765 457765
No 351
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.47 E-value=4.8e-15 Score=130.09 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=117.6
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------------H
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------L 76 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------------l 76 (263)
...+.+.++..+.+|+++||||.+||||||+.++|+|+.... .-....|.|.++|+++.. +
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~------~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I 90 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP------NARIVGGEILFDGKDLLSLSEKELRKIRGKEI 90 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCC------CCeEeeeEEEECCcccccCCHHHHHhhcCceE
Confidence 356888999999999999999999999999999999995200 001256899999985432 2
Q ss_pred hhhcCCCC-CCCcceeh----hhhhccccCcccccchHHHHHHHHhhhccee--EEeeccCCCceeeecc----------
Q 024748 77 CQLFKPKS-AVPAFLEI----HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIF--HVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 77 ~~~~~~~~-~~~~~l~~----~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l--~vv~~~~~~~~~~l~~---------- 139 (263)
+.+||... .+...+++ .|+...+...........++.+.++.+..-- .+++.|- ..++|
T Consensus 91 ~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----helSGGMrQRV~IAm 166 (316)
T COG0444 91 AMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----HELSGGMRQRVMIAM 166 (316)
T ss_pred EEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----cccCCcHHHHHHHHH
Confidence 22344321 22222332 2222222111000011122233333332100 0111110 12333
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh-hcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+.+| ++++.|||+..+|.......++.++++.. .+. ||++..+.++|||| .+|..|+++..|+..
T Consensus 167 ala~~P--~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri-~VMYaG~iVE~g~~~ 239 (316)
T COG0444 167 ALALNP--KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV-AVMYAGRIVEEGPVE 239 (316)
T ss_pred HHhCCC--CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE-EEEECcEEEEeCCHH
Confidence 5778 89999999999999999999999888875 333 39999999999999 999999999887653
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.46 E-value=7.7e-15 Score=153.30 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=122.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--Hhh--hcCCCC-C
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQ--LFKPKS-A 85 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~~--~~~~~~-~ 85 (263)
......+++.+++|+.++|+|+||||||||+++|+|... .-+..|.|.++|..... ... .|.+|. .
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~ 963 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIRISGFPKKQETFARISGYCEQNDI 963 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC---------CCcccceEEECCccCChHHhhhheEEEccccc
Confidence 356788999999999999999999999999999999841 01468999999865432 111 255554 4
Q ss_pred CCcceehhhhhccccCcccc-----cchHHHHHHHHhhhcceeEEeecc-CCCceeeecc------------cCCCchhH
Q 024748 86 VPAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~-----~~~~~~~~~~~~~~d~~l~vv~~~-~~~~~~~l~~------------~~~P~~~i 147 (263)
....+++.|++.+....+.. ......+.+.++..+.- +..+.. +.+.+..+++ ..+| ++
T Consensus 964 ~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P--~l 1040 (1470)
T PLN03140 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP--SI 1040 (1470)
T ss_pred cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCC--CE
Confidence 45678999998775322111 01111122222222210 011110 0000111222 5678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhc-CCccccCCCCH
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQD-GKDVRLGDWKA 208 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~-G~~~~~g~~~d 208 (263)
+++|||+.++|........+.+++....+.+ |+.. .+.++||++ .+|.+ |++++.|+..+
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~v-llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEE-EEEcCCCEEEEECCccc
Confidence 9999999999999998888888887655544 8887 577899999 88886 89989888653
No 353
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.46 E-value=7.5e-14 Score=112.25 Aligned_cols=86 Identities=34% Similarity=0.476 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+|+++|.||+|||||||+|+|....++++|++|+++..|.+.+.+ ..+.++|+||++......
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCCCC
Confidence 689999999999999999999998889999999999999999876 368999999987644321
Q ss_pred --cchHHHHHHHHhhhcceeEEeecc
Q 024748 106 --QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 106 --~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
+.....++. .+..|.++.++|+.
T Consensus 65 ~ee~v~~~~l~-~~~~D~ii~VvDa~ 89 (156)
T PF02421_consen 65 EEERVARDYLL-SEKPDLIIVVVDAT 89 (156)
T ss_dssp HHHHHHHHHHH-HTSSSEEEEEEEGG
T ss_pred cHHHHHHHHHh-hcCCCEEEEECCCC
Confidence 222222222 36789999999984
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-14 Score=141.83 Aligned_cols=179 Identities=11% Similarity=0.095 Sum_probs=104.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
......++.+|.+|+++||+|+||||||||||+|+|.. .|++|.|.+++... ++ |.++.......
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-----------~pd~G~I~~~~~~~--i~--~~~q~~~~~~~ 78 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-----------SADGGSYTFPGNWQ--LA--WVNQETPALPQ 78 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEecCCCE--EE--EEecCCCCCCC
Confidence 45678999999999999999999999999999999984 89999999876420 11 11111000001
Q ss_pred ehhhhhcccc----Cc----------ccccchH---HHHH-----HHHhhhcceeEEeecc---CCCceeeecc------
Q 024748 91 EIHDIAGLVR----GA----------HEGQGLG---NSFL-----SHIRAVDGIFHVLRAF---EDPDIIHVDD------ 139 (263)
Q Consensus 91 ~~~d~~g~~~----~~----------~~~~~~~---~~~~-----~~~~~~d~~l~vv~~~---~~~~~~~l~~------ 139 (263)
+.++.+.-.. .. .....+. ..+. ..-..+..++..++.. .+..+..+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 1111110000 00 0000000 0000 0001111112222111 0111222333
Q ss_pred ------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 140 ------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 140 ------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
..+| +++++|||+...|+..+....+.+.+... .-.+|+...+..+|+++ .+|++|++. +.|.++
T Consensus 159 ~LA~aL~~~P--~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i-~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 159 NLAQALICRS--DLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKI-IHIEQQSLFEYTGNYS 232 (638)
T ss_pred HHHHHHccCC--CEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEE-EEEeCCEEEEecCCHH
Confidence 4678 89999999999999988876666655311 01139999999999999 899999986 456654
No 355
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.45 E-value=6.2e-13 Score=115.44 Aligned_cols=196 Identities=17% Similarity=0.101 Sum_probs=128.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-.+|+||.||+|||||.|-+.|..++. |.++.||+....|.++-+. .++.++||||+....+
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKKM 135 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccccch
Confidence 489999999999999999999999966 8999999999999888654 4799999999987554
Q ss_pred c-ccch----HHHHHHHHhhhcceeEEeeccCCCc-----eee-------------ecccCCCchhHHHHHHHhhhccHH
Q 024748 104 E-GQGL----GNSFLSHIRAVDGIFHVLRAFEDPD-----IIH-------------VDDSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 104 ~-~~~~----~~~~~~~~~~~d~~l~vv~~~~~~~-----~~~-------------l~~~~~P~~~i~ilde~~~~~d~~ 160 (263)
. +..+ ......+++.+|.++-++|+.+... +++ +.....+..+-++++.--.+ -..
T Consensus 136 ~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~L-t~g 214 (379)
T KOG1423|consen 136 HRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLL-TNG 214 (379)
T ss_pred hhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhc-ccc
Confidence 3 2222 2345667889999999999974221 111 11111111122222211000 000
Q ss_pred HHHH-HHHHHHHHhhhc--------------------cchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHH-----HHH
Q 024748 161 FMER-RIEDVEKSMKRS--------------------NDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEI 213 (263)
Q Consensus 161 ~~~k-~~~~~~~~~~~~--------------------~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~-----~e~ 213 (263)
.+.+ .++...+..... ++..+++++++-+.+....+.|++.|+ +..+++. .+.
T Consensus 215 ~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~ 294 (379)
T KOG1423|consen 215 ELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSES 294 (379)
T ss_pred ccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHH
Confidence 1111 111111111000 026778899999999888899999998 4456554 378
Q ss_pred Hhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 214 LNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 214 ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
+|+. .-...+++||.+.+....|++
T Consensus 295 VReklLd~~pqEVPY~lq~~i~~w~e 320 (379)
T KOG1423|consen 295 VREKLLDHLPQEVPYNLQVRILSWKE 320 (379)
T ss_pred HHHHHHhhCccccCcceEEEEEEeee
Confidence 8888 555689999999998888876
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=5.8e-14 Score=148.08 Aligned_cols=175 Identities=16% Similarity=0.105 Sum_probs=121.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (263)
.+..+.++.+|++|+++||+|++|||||||+++|+|++ +|+.|.|.++|.++..+.. .+.||
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-----------~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-----------ESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------cCCCCeEEECCEEccccCHHHHHhcCeEECC
Confidence 36788999999999999999999999999999999995 8999999999998765332 27788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc-CCCc--e----eeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPD--I----IHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~-~~~~--~----~~l~~------------~~~P~ 144 (263)
+.+...-++.+++...... . ..++.++++.+++- ..+... +..+ + ..+++ ..+|
T Consensus 1368 dp~LF~gTIr~NLdp~~~~-s----deei~~al~~a~l~-~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~- 1440 (1522)
T TIGR00957 1368 DPVLFSGSLRMNLDPFSQY-S----DEEVWWALELAHLK-TFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT- 1440 (1522)
T ss_pred CCcccCccHHHHcCcccCC-C----HHHHHHHHHHcCcH-HHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC-
Confidence 8554556899998633211 1 22344444444321 111111 0000 0 01221 3456
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+|+++||++...|.+.-....+.+++.. ++.| |..+.+. -||+| .+|++|+++..|+..
T Consensus 1441 -~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~-~~DrI-lVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1441 -KILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIM-DYTRV-IVLDKGEVAEFGAPS 1504 (1522)
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEE-EEEECCEEEEECCHH
Confidence 8999999999999987666666665543 3333 9998875 48999 999999999887654
No 357
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.43 E-value=2.9e-14 Score=117.28 Aligned_cols=152 Identities=12% Similarity=0.055 Sum_probs=93.1
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--HhhhcCCCCCC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKPKSAV 86 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~~~~~~~~~~ 86 (263)
.++++.+.++.++.+|++++|+||||||||||||++++ +.|.+.+.+..-.. ....|.+
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~~~~~~~~~~~~~---- 66 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFLPKFSRNKLIFID---- 66 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcccccccccEEEEh----
Confidence 35788999999999999999999999999999999863 25666665431000 0000111
Q ss_pred CcceehhhhhccccC-ccc-c--cchHHHHHHHHhhhcceeEEeeccCCCceeeecccCC--CchhHHHHHHHhhhccHH
Q 024748 87 PAFLEIHDIAGLVRG-AHE-G--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD--PVRDLEVISAELRLKDIE 160 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~-~~~-~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~--P~~~i~ilde~~~~~d~~ 160 (263)
+..+.+..++... ... . ...+.+ ..+.. .+++ ..+ | ++.++|||+...|+.
T Consensus 67 --q~~~l~~~~L~~~~~~~~~~~LSgGq~--qrl~l-------aral----------~~~~~p--~llLlDEPt~~LD~~ 123 (176)
T cd03238 67 --QLQFLIDVGLGYLTLGQKLSTLSGGEL--QRVKL-------ASEL----------FSEPPG--TLFILDEPSTGLHQQ 123 (176)
T ss_pred --HHHHHHHcCCCccccCCCcCcCCHHHH--HHHHH-------HHHH----------hhCCCC--CEEEEeCCcccCCHH
Confidence 1223333333210 000 0 011111 00000 1110 245 6 899999999999999
Q ss_pred HHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 161 FMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
..+...+.+.+....+.+ |+.+.+ ..||++ ..|.+|+....+
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i-~~l~~g~~~~~~ 170 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWI-IDFGPGSGKSGG 170 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEE-EEECCCCCCCCc
Confidence 988888888776543433 998876 579999 888887654444
No 358
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.9e-13 Score=109.06 Aligned_cols=170 Identities=18% Similarity=0.295 Sum_probs=116.2
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH---------------HHh
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------------WLC 77 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~---------------~l~ 77 (263)
++-++....+.|+.+.++||+|||||||++.|.=++ -|.+|...+-+..++ .++
T Consensus 17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle-----------~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-----------MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-----------CCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 344566677899999999999999999999998775 577888777654331 133
Q ss_pred hhcCCCCCCCcceehhhhhcccc----Ccccccch--HHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 78 QLFKPKSAVPAFLEIHDIAGLVR----GAHEGQGL--GNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 78 ~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~~~--~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
.+|+.... ...++++++.--.. +..+...+ ...++..++..+ |.+...+++++
T Consensus 86 mvfqqy~l-wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------~adr~plhlsggqqqrvaiaral 156 (242)
T COG4161 86 MVFQQYNL-WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------YADRYPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred hhhhhhcc-CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc--------ccccCceecccchhhhHHHHHHH
Confidence 34554443 34788777653221 12211111 122233333332 22222345554
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+..| +++++|||+...|++.-....+.++++...+.+ |..+...+.+.++ .+|++|+++..|+
T Consensus 157 mmkp--qvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v-vyme~g~ive~g~ 224 (242)
T COG4161 157 MMEP--QVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred hcCC--cEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe-EeeecCeeEeecc
Confidence 4567 899999999999999988888888888766654 9999999999999 9999999987765
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.9e-13 Score=111.29 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=89.9
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh------hcC-CCCCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFK-PKSAV 86 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~------~~~-~~~~~ 86 (263)
-.+++.++.+|+.+-|.||||||||||+++|+|+ .+|+.|.|.++|..+..... .|. -+..+
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-----------l~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~gi 86 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL-----------LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCeEEecCCCCccchhhHHHHHHHhhccccc
Confidence 3567889999999999999999999999999999 59999999999876654332 122 23355
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----------cCCCchhHHHHHHHhh
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD-----------SVDPVRDLEVISAELR 155 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~-----------~~~P~~~i~ilde~~~ 155 (263)
...+++.|+.-|....+.. .-...+.+++..++. ..+.+..+..++. -..| +.+-++|||+.
T Consensus 87 K~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL-----~g~~dlp~~~LSAGQqRRvAlArL~ls~-~pLWiLDEP~t 159 (209)
T COG4133 87 KTELTALENLHFWQRFHGS-GNAATIWEALAQVGL-----AGLEDLPVGQLSAGQQRRVALARLWLSP-APLWILDEPFT 159 (209)
T ss_pred cchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCc-----ccccccchhhcchhHHHHHHHHHHHcCC-CCceeecCccc
Confidence 5679999999988766543 112334444444432 1122222222221 0111 15888999999
Q ss_pred hccHHHHHHHHHHH
Q 024748 156 LKDIEFMERRIEDV 169 (263)
Q Consensus 156 ~~d~~~~~k~~~~~ 169 (263)
..|.+.....-..+
T Consensus 160 aLDk~g~a~l~~l~ 173 (209)
T COG4133 160 ALDKEGVALLTALM 173 (209)
T ss_pred ccCHHHHHHHHHHH
Confidence 98876655544333
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.43 E-value=3e-14 Score=140.07 Aligned_cols=171 Identities=12% Similarity=0.126 Sum_probs=104.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceeh
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~ 92 (263)
....++++|.+|+++||+|+||||||||+++|+|+ .+|+.|.|.+.+.. .++ |.+|... ..+++
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-----------l~p~~G~I~~~~~~--~ig--yv~Q~~~-~~l~~ 587 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-----------LQPSSGTVFRSAKV--RMA--VFSQHHV-DGLDL 587 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCceEEECCce--eEE--EEecccc-ccCCc
Confidence 56778899999999999999999999999999999 48999999886531 122 3333221 12222
Q ss_pred hhhhcccc-CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccH
Q 024748 93 HDIAGLVR-GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 93 ~d~~g~~~-~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~ 159 (263)
.++..+.. ...... ....+...+...+.- ....+..+..+++ ..+| +++++|||+...|+
T Consensus 588 ~~~~~~~~~~~~~~~-~~~~i~~~L~~~gl~----~~~~~~~~~~LSgGqkqRvaLAraL~~~p--~lLLLDEPT~~LD~ 660 (718)
T PLN03073 588 SSNPLLYMMRCFPGV-PEQKLRAHLGSFGVT----GNLALQPMYTLSGGQKSRVAFAKITFKKP--HILLLDEPSNHLDL 660 (718)
T ss_pred chhHHHHHHHhcCCC-CHHHHHHHHHHCCCC----hHHhcCCccccCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCH
Confidence 22211100 000000 011222222222210 0000111112222 4567 89999999999999
Q ss_pred HHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 160 EFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 160 ~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
...+...+.+.+... .-.+|+...+..+|+++ .+|.+|++. +.|+++
T Consensus 661 ~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv-~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 661 DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDEL-WVVSEGKVTPFHGTFH 710 (718)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCCHH
Confidence 988887766654310 01139999999999999 889999987 556543
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.43 E-value=1.3e-13 Score=131.82 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=99.6
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~~~ 84 (263)
+....++.++++|++++|+|++|||||||+|+|+|++ +|++|.|.++|.++..+ . .|.||+
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-----------~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-----------DPLQGEVTLDGVSVSSL-QDELRRRISVFAQD 416 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEEhhhH-HHHHHhheEEEccC
Confidence 4678889999999999999999999999999999995 89999999999887654 2 278888
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCC---ceeeecc------------cCCCchh
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDP---DIIHVDD------------SVDPVRD 146 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~---~~~~l~~------------~~~P~~~ 146 (263)
..-..-++.|+..++...... +++.+.++.+.+ +..+=+.++.. .-..+++ ..+| +
T Consensus 417 ~~lF~~TI~eNI~~g~~~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~--~ 490 (529)
T TIGR02868 417 AHLFDTTVRDNLRLGRPDATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA--P 490 (529)
T ss_pred cccccccHHHHHhccCCCCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC--C
Confidence 665677999999887543222 233333343321 11111111100 0011232 3567 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHH
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKS 172 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~ 172 (263)
++++||++...|.+.-++..+.+.+.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999998877766666654
No 362
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=1.3e-13 Score=110.78 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-----------
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------- 78 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~----------- 78 (263)
+..-+..+...|+.|+.++|||++|||||||+-+|+|+. .|++|.|.+.|+.+..+..
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-----------~~ssGeV~l~G~~L~~ldEd~rA~~R~~~v 90 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-----------DPSSGEVRLLGQPLHKLDEDARAALRARHV 90 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-----------CCCCceEEEcCcchhhcCHHHHHHhhccce
Confidence 344567889999999999999999999999999999996 8999999999988754322
Q ss_pred --hcCCCCCCCcceehhhhhccccCccc--ccch---HHHHHHHHhhhcceeEEeeccCC--CceeeecccCCCchhHHH
Q 024748 79 --LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVDGIFHVLRAFED--PDIIHVDDSVDPVRDLEV 149 (263)
Q Consensus 79 --~~~~~~~~~~~l~~~d~~g~~~~~~~--~~~~---~~~~~~~~~~~d~~l~vv~~~~~--~~~~~l~~~~~P~~~i~i 149 (263)
+||....+ .+++..+++.+...... .... ....++.+..-+-+-|.=..... ..-+.+..+..+..++++
T Consensus 91 GfVFQSF~Li-p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 91 GFVFQSFHLI-PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eEEEEeeecc-ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 34443344 47888888877654332 1111 12222222222111111100000 000011112223338999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHh-hhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSM-KRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~-~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
.|||+--.|...-++..+.+-.+. +.+.| |+... ..=|+|+ ..|..|+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L-A~Rc~R~-~r~~~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL-AARCDRQ-LRLRSGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH-HHhhhhe-eeeecceecc
Confidence 999999999887777777654443 34443 76654 3568888 7778887653
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.42 E-value=7.4e-14 Score=147.28 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=121.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (263)
.+..+.++.+|++|++|||||++|||||||+++|+|++ +|+.|.|.++|.++..+. . .+.||
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-----------~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQ 1391 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-----------EVCGGEIRVNGREIGAYGLRELRRQFSMIPQ 1391 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEEcccCCHHHHHhcceEECC
Confidence 34788899999999999999999999999999999995 899999999998875432 2 37788
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-CCc--e----eeecc------------cC-CC
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-DPD--I----IHVDD------------SV-DP 143 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~--~----~~l~~------------~~-~P 143 (263)
..+.+.-++.+++....... ...+.++++.+.+- ..+.... ..+ + ..+++ .. +|
T Consensus 1392 dp~LF~gTIreNIdp~~~~s-----deeI~~Al~~a~l~-~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1392 DPVLFDGTVRQNVDPFLEAS-----SAEVWAALELVGLR-ERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred CCccccccHHHHhCcccCCC-----HHHHHHHHHHCCCh-HHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 85555668999986532211 23444555554321 1111110 000 0 11222 22 25
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++||++...|.+.-+...+.+.+.. .+.| |..+.+ .-||+| .+|++|+++..|+..
T Consensus 1466 --~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti-~~~DrI-lVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1466 --GFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTV-AQYDKI-IVMDHGAVAEMGSPR 1529 (1560)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHH-HhCCEE-EEEECCEEEEECCHH
Confidence 7999999999999988777666666543 2333 999877 569999 999999999888654
No 364
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=8.1e-14 Score=135.91 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc-hHHHhhhcCCCCC-CCc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKSA-VPA 88 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~-~~~l~~~~~~~~~-~~~ 88 (263)
.+....++++|.+|+++||+|+|||||||||++|+|.. .|+.|.|.+++.. +..+ ++.. ...
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-----------~p~~G~I~~~~~~~~~~l-----~q~~~~~~ 79 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-----------LLDDGRIIYEQDLIVARL-----QQDPPRNV 79 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-----------CCCCeEEEeCCCCEEEEe-----ccCCCCCC
Confidence 45677899999999999999999999999999999994 8999999887631 1111 1110 000
Q ss_pred ceehhhhhcccc------------------CcccccchH--HHHHH---------HHhhhcceeEEeeccCCCceeeecc
Q 024748 89 FLEIHDIAGLVR------------------GAHEGQGLG--NSFLS---------HIRAVDGIFHVLRAFEDPDIIHVDD 139 (263)
Q Consensus 89 ~l~~~d~~g~~~------------------~~~~~~~~~--~~~~~---------~~~~~d~~l~vv~~~~~~~~~~l~~ 139 (263)
..++.+.+.... .......+. ..+.. .-..+..++..++...+..+..+++
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSg 159 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSG 159 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCH
Confidence 111222110000 000000000 00000 0011111122222111222223343
Q ss_pred ------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccC
Q 024748 140 ------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLG 204 (263)
Q Consensus 140 ------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g 204 (263)
..+| +++++|||+...|+..++...+.+.+... .-.+|+...+..+|+++ ..|++|+++ +.|
T Consensus 160 GekqRv~LAraL~~~P--~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i-~~L~~G~i~~~~g 236 (635)
T PRK11147 160 GWLRKAALGRALVSNP--DVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRI-VDLDRGKLVSYPG 236 (635)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEEecC
Confidence 4678 89999999999999998887777766521 01139999999999999 899999986 446
Q ss_pred CCC
Q 024748 205 DWK 207 (263)
Q Consensus 205 ~~~ 207 (263)
.++
T Consensus 237 ~~~ 239 (635)
T PRK11147 237 NYD 239 (635)
T ss_pred CHH
Confidence 654
No 365
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.41 E-value=6.3e-14 Score=134.73 Aligned_cols=168 Identities=15% Similarity=0.007 Sum_probs=105.3
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~~ 84 (263)
+....++.++++|++++|+|+||||||||+++|+|.+ +|++|.|.++|.++..+. . .+.+|.
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-----------~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 424 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-----------IPQEGEILLDGAAVSADSRDDYRDLFSAIFAD 424 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCHHHHHhhCcEEccC
Confidence 4677789999999999999999999999999999995 899999999998764321 1 144444
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc-eeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD-IIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~-~~~l~~------------~~~P~~~i~il 150 (263)
.....-++.++. . .........+.++.++.- ..++...+ .+ ...+++ ..+| +++++
T Consensus 425 ~~lf~~ti~~n~--~-----~~~~~~~~~~~~~~~~l~-~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~--~ilil 494 (555)
T TIGR01194 425 FHLFDDLIGPDE--G-----EHASLDNAQQYLQRLEIA-DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR--PILLF 494 (555)
T ss_pred hhhhhhhhhccc--c-----cchhHHHHHHHHHHcCCc-hhhcccccccCCcccCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 222222333331 0 001112233333433321 11111100 00 122333 4567 89999
Q ss_pred HHHhhhccHHHHHHHHHHHH-HHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 151 SAELRLKDIEFMERRIEDVE-KSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~-~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
||++...|....+...+.+. .....+.+ |+.+.+ +.||+| ..|++|+++.
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i-~~l~~G~i~~ 550 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQI-IKLAAGCIVK 550 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEE-EEEECCEEEE
Confidence 99999999998777665543 23223333 988754 689999 8899998653
No 366
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=3.5e-13 Score=122.99 Aligned_cols=89 Identities=31% Similarity=0.323 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc-
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA- 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~- 102 (263)
.+|+|||+||+|||||||.|+|...++ +++|++|+++..|...+.|. .+.++||.|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~-----------------~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR-----------------EFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc-----------------eEEEEECCCCCcCCc
Confidence 479999999999999999999999998 99999999999999999873 48999999998654
Q ss_pred -ccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 103 -HEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 103 -~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.-...+..+.+.++.++|++++|+|+-.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~ 95 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGRE 95 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 2245667888999999999999999853
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=1.1e-13 Score=145.00 Aligned_cols=190 Identities=10% Similarity=0.048 Sum_probs=129.5
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------------------------------------
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-------------------------------------- 51 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-------------------------------------- 51 (263)
+.+....++.++++|+++||||++|||||||+++|+|++.+.
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 356888999999999999999999999999999999998751
Q ss_pred -----CCCCccccCCccceeeeCCcchHHHh-----h--hcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhh
Q 024748 52 -----ENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV 119 (263)
Q Consensus 52 -----~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 119 (263)
..-+..|..|++|.|.++|.++..+. . .|.||....+..++.|++.++..... ..++.++++.+
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at----~eeI~~A~k~A 1335 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT----REDVKRACKFA 1335 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC----HHHHHHHHHHc
Confidence 01133455678999999999876432 2 27888866678999999999854321 22344444444
Q ss_pred cc---eeEEeeccCCC---ceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh-hccc--
Q 024748 120 DG---IFHVLRAFEDP---DIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSND-- 178 (263)
Q Consensus 120 d~---~l~vv~~~~~~---~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~~-- 178 (263)
.+ +..+=+.++.. .-..+++ ..+| +++++||++...|.+.-+...+.+.+... .+.|
T Consensus 1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p--~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvI 1413 (1466)
T PTZ00265 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP--KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413 (1466)
T ss_pred CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEE
Confidence 32 11111111100 0012333 4678 89999999999999886666666666531 2333
Q ss_pred ---hhHHHHHHHHHHHHHHhhc----CCcc-ccCCCC
Q 024748 179 ---KQLKIEHELCQRVKAWLQD----GKDV-RLGDWK 207 (263)
Q Consensus 179 ---h~~~~i~~l~d~i~~~L~~----G~~~-~~g~~~ 207 (263)
|..+.+ +.||+| .+|++ |+++ ..|+.+
T Consensus 1414 iIaHRlsti-~~aD~I-vvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1414 TIAHRIASI-KRSDKI-VVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred EEechHHHH-HhCCEE-EEEeCCCCCCCEEEEecCHH
Confidence 999776 569999 99998 8865 457543
No 368
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.39 E-value=1.4e-13 Score=132.21 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=106.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|++ +|++|.|.++|.++.. +.. .|.+|
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-----------~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 404 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-----------QPQSGEILLDGKPVTAEQPEDYRKLFSAVFT 404 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEECCCCCHHHHhhheEEEec
Confidence 35788899999999999999999999999999999995 8999999999987642 111 14555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC-ceeeecc------------cCCCchhHHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP-DIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~-~~~~l~~------------~~~P~~~i~il 150 (263)
......-++.++ + . . .....+.+.++.++.-.. +...+.. .-..+++ ..+| +++++
T Consensus 405 ~~~lf~~ti~~n-~--~-~----~~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~LSgGq~qRl~lARal~~~~--~ilil 473 (547)
T PRK10522 405 DFHLFDQLLGPE-G--K-P----ANPALVEKWLERLKMAHK-LELEDGRISNLKLSKGQKKRLALLLALAEER--DILLL 473 (547)
T ss_pred ChhHHHHhhccc-c--C-c----hHHHHHHHHHHHcCCchh-hhccccCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 532223334443 1 0 0 001122222222221100 1000000 0011222 4567 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
||++...|....++..+.+.+... .+.+ |..+. .+.||++ ..|++|++...
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEE-EEEECCEEEEe
Confidence 999999999887776666654332 2333 88765 4689999 99999988755
No 369
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.37 E-value=2.5e-13 Score=142.46 Aligned_cols=174 Identities=10% Similarity=0.069 Sum_probs=114.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC-CcchHH-----Hhh--hcC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEW-----LCQ--LFK 81 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~-g~~~~~-----l~~--~~~ 81 (263)
+.+....++.++++|+++||+|+||||||||+++|+|++ +|+.|.|.++ |.++.. +.. .|.
T Consensus 397 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-----------~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V 465 (1466)
T PTZ00265 397 DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-----------DPTEGDIIINDSHNLKDINLKWWRSKIGVV 465 (1466)
T ss_pred CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-----------cCCCCeEEEeCCcchhhCCHHHHHHhccEe
Confidence 356888999999999999999999999999999999995 8999999994 555532 222 266
Q ss_pred CCCCCCcceehhhhhccccCcccc-----------------------------------------------------cch
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEG-----------------------------------------------------QGL 108 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~-----------------------------------------------------~~~ 108 (263)
+|.......++.|++.++...... ...
T Consensus 466 ~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 545 (1466)
T PTZ00265 466 SQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIK 545 (1466)
T ss_pred cccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCC
Confidence 666333346899998775321000 000
Q ss_pred HHHHHHHHhhhcceeEEeecc----C---CCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHHHHH
Q 024748 109 GNSFLSHIRAVDGIFHVLRAF----E---DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDV 169 (263)
Q Consensus 109 ~~~~~~~~~~~d~~l~vv~~~----~---~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~ 169 (263)
...+.+.++.+++- ..+..+ + ......+++ ..+| +++++||++...|........+.+
T Consensus 546 ~~~v~~a~~~~~l~-~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P--~ILlLDEpTSaLD~~se~~i~~~L 622 (1466)
T PTZ00265 546 DSEVVDVSKKVLIH-DFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP--KILILDEATSSLDNKSEYLVQKTI 622 (1466)
T ss_pred HHHHHHHHHHhCcH-HHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHH
Confidence 11222333333210 011111 0 000112332 4678 899999999999999888877777
Q ss_pred HHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 170 EKSMK-RSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 170 ~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
.+... .+.| |.++.+ +.||+| .+|++|+
T Consensus 623 ~~~~~~~g~TvIiIsHrls~i-~~aD~I-ivl~~g~ 656 (1466)
T PTZ00265 623 NNLKGNENRITIIIAHRLSTI-RYANTI-FVLSNRE 656 (1466)
T ss_pred HHHhhcCCCEEEEEeCCHHHH-HhCCEE-EEEeCCc
Confidence 77653 2333 999887 689999 8998873
No 370
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.9e-13 Score=127.67 Aligned_cols=176 Identities=13% Similarity=0.177 Sum_probs=122.0
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhh--cCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQL--FKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~--~~~ 82 (263)
+.|-...++.+|++|++++||||+|+||||+.++|..++ +|++|+|.++|.++..+ ... ++.
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-----------~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~ 548 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-----------DPTSGRILLDGVPISDINHKYLRRKIGLVG 548 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-----------CCCCCeEEECCeehhhcCHHHHHHHeeeee
Confidence 466677899999999999999999999999999999997 99999999999988642 222 556
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC-c------eeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP-D------IIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~-~------~~~l~~------------~~~P 143 (263)
|+.+-+.-++.||+.++...... +.+..+.+.+++- ..+..|.+. + =..++| ..+|
T Consensus 549 QEPvLFs~sI~eNI~YG~~~~t~----e~i~~AAk~ANah-~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 549 QEPVLFSGSIRENIAYGLDNATD----EEIEAAAKMANAH-EFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred ccceeecccHHHHHhcCCCCCCH----HHHHHHHHHhChH-HHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 66555678999999998773322 2333333433321 122233111 1 113343 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
.++++||.+..+|.+.-.-..+.+.+.. ++.| |.++.+ +-+|+| .++++|+++..|+-
T Consensus 624 --~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV-~~Ad~I-vvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 624 --RVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTV-RHADQI-VVIDKGRVVEMGTH 686 (716)
T ss_pred --CEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHh-hhccEE-EEEcCCeEEecccH
Confidence 7999999999999875333333333333 2222 888887 567888 99999999887753
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.36 E-value=4e-13 Score=120.70 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=127.9
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh----------
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------- 78 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~---------- 78 (263)
+..-|-..++.++..|+.+||||.+|||||||=.+|+++. +..|.|.+.|+++..+..
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~------------~s~G~I~F~G~~i~~~~~~~mrplR~~m 365 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI------------PSQGEIRFDGQDIDGLSRKEMRPLRRRM 365 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc------------CcCceEEECCccccccChhhhhhhhhhc
Confidence 3455667889999999999999999999999999999993 455999999998754222
Q ss_pred --hcC-CCCCCCcceehhhhhccccCccc----ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------
Q 024748 79 --LFK-PKSAVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------ 139 (263)
Q Consensus 79 --~~~-~~~~~~~~l~~~d~~g~~~~~~~----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------ 139 (263)
+|| |...+...+++-+.++-+...|. ......++.++++++..--....-| -..+++
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY----PhEFSGGQRQRIAIARAl 441 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY----PHEFSGGQRQRIAIARAL 441 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC----CcccCcchhhHHHHHHHH
Confidence 244 33355667888887765554443 1223344555555554211111111 011222
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~------~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
..+| ++.++|||++..|.......++.++++..+.. +|++.-+..+|+++ .+|.+|+++..|+.+
T Consensus 442 iLkP--~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v-iVm~~GkiVE~G~~~ 512 (534)
T COG4172 442 ILKP--ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV-IVMRDGKIVEQGPTE 512 (534)
T ss_pred hcCC--cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE-EEEeCCEEeeeCCHH
Confidence 3567 89999999999999988888888887754322 39999999999999 999999999988754
No 372
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.36 E-value=2.9e-12 Score=110.17 Aligned_cols=88 Identities=31% Similarity=0.546 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++|+|+||||||||+|.|+|....++++|++|..|..|.+.+.| ..++++|+||+.......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCcccccccc
Confidence 689999999999999999999987778999999999999998876 358899999987765444
Q ss_pred cchHHHHHHHHhhhcceeEEeeccC
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.++..+++..++.+|.+++++++++
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCCc
Confidence 4566677788899999999998743
No 373
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.35 E-value=2.7e-13 Score=142.71 Aligned_cols=174 Identities=11% Similarity=0.094 Sum_probs=118.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (263)
..+..+.++.+|++|+++||+|++|||||||+++|+|+. + .+|.|.++|.++..+.. .+.|
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-----------~-~~G~I~IdG~di~~i~~~~lR~~is~Ip 1298 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-----------S-TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-----------C-CCcEEEECCEEcccCCHHHHHhceEEEe
Confidence 356888999999999999999999999999999999994 4 68999999988754322 2778
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCCCce----eeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFEDPDI----IHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~~~~----~~l~~------------~~~P 143 (263)
|..+.+.-++.+++....... ...+.+.++.+.+ +-..-+.++. .+ ..+++ ..+|
T Consensus 1299 Qdp~LF~GTIR~NLdp~~~~t-----deei~~aL~~~~L~~~i~~lp~GLdt-~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1299 QKVFIFSGTFRKNLDPYEQWS-----DEEIWKVAEEVGLKSVIEQFPDKLDF-VLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred CCCccCccCHHHHhCcccCCC-----HHHHHHHHHHCCCHHHHHhCcccccc-ccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 885555668999885432111 2233333443322 1000000000 00 01111 2445
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|+++||++...|.+.-....+.+.+.. .+.| |.++.+.. ||+| .+|++|+++..|+.
T Consensus 1373 --~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI-lvL~~G~ivE~g~p 1435 (1490)
T TIGR01271 1373 --KILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLE-CQQF-LVIEGSSVKQYDSI 1435 (1490)
T ss_pred --CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEE-EEEECCEEEEeCCH
Confidence 8999999999999988777666666553 2333 99988765 9999 99999999877754
No 374
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.7e-12 Score=118.82 Aligned_cols=95 Identities=26% Similarity=0.307 Sum_probs=81.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
..+..|.+++|+|+||+|||||||+|++...+| ++.|+||++.....+.++|. .+.++||+|
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~-----------------pv~l~DTAG 274 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI-----------------PVRLVDTAG 274 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE-----------------EEEEEecCC
Confidence 456789999999999999999999999999998 99999999999999999984 489999999
Q ss_pred cccCcccccchH-HHHHHHHhhhcceeEEeeccC
Q 024748 98 LVRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+......-+..+ ++.++.++++|.+++|+|+..
T Consensus 275 iRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred cccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 986544322222 556788999999999999976
No 375
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.33 E-value=1.2e-12 Score=120.52 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=123.3
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhh--cC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQL--FK 81 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~--~~ 81 (263)
.++|-.+.+++++.+|+.+|||||+|||||||.|+|.|.. .|.+|.|+++|-++++. +.. |.
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-----------~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-----------PPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-----------ccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 3478889999999999999999999999999999999996 89999999999887643 332 78
Q ss_pred CCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhc---ceeEEeeccCCCc---eeeecc------------cCCC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD---GIFHVLRAFEDPD---IIHVDD------------SVDP 143 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d---~~l~vv~~~~~~~---~~~l~~------------~~~P 143 (263)
||..-.+.=|+.+++.=..... -.+++.++.+.++ .++.+=+.|+..- =..+++ ..+|
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~~----d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEEA----DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cccceecCCcHHHHHHhccccC----CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 8874333456666654332111 1234445444443 2333334443210 011222 3578
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.+.++|||-.-.|.+.-......+...+.++.+ -+...+...+|+| .+|++|++..+|+-+
T Consensus 492 --~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dki-lvl~~G~~~~FG~r~ 556 (580)
T COG4618 492 --FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKI-LVLQDGRIAAFGPRE 556 (580)
T ss_pred --cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhccee-eeecCChHHhcCCHH
Confidence 688889988888877655555666666656654 3344556889999 999999999888644
No 376
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.33 E-value=5.5e-12 Score=102.00 Aligned_cols=88 Identities=40% Similarity=0.725 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
.|+|||++|||||||+|.|+|....++.+|++|+.|..|.+.+.+. ..+.++|++|+.......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCccccc
Confidence 4899999999999999999998776678899999999998876542 268999999986544443
Q ss_pred cchHHHHHHHHhhhcceeEEeecc
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
..+...+...++.+|.++.++|+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~ 89 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLS 89 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecC
Confidence 445667777788899999999874
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.32 E-value=3.6e-13 Score=141.79 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=113.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|+.++|+|+||||||||+++|+|.. +|+.|.|.++|. ..|.+|.......
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-----------~~~~G~i~~~g~------iayv~Q~~~l~~~ 501 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-----------EPSEGKIKHSGR------ISFSPQTSWIMPG 501 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCE------EEEEeCCCccCCc
Confidence 35678889999999999999999999999999999994 899999999873 2355555332345
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC-------ceeeecc------------cCCCchhHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP-------DIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~-------~~~~l~~------------~~~P~~~i~ild 151 (263)
++.|++.++..... ....+.++.+.+ ...+..+... ....+++ ..+| +++++|
T Consensus 502 Ti~eNI~~g~~~~~-----~~~~~~~~~~~L-~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~--~illLD 573 (1490)
T TIGR01271 502 TIKDNIIFGLSYDE-----YRYTSVIKACQL-EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA--DLYLLD 573 (1490)
T ss_pred cHHHHHHhccccch-----HHHHHHHHHHhH-HHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCC--CEEEEe
Confidence 89999887643211 111111222210 0001111000 0112332 3567 899999
Q ss_pred HHhhhccHHHHHHHHHH-HHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 152 AELRLKDIEFMERRIED-VEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~-~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
||+...|....++..+. +.+.. .+++ |+...+.. ||++ .+|++|+++..|+.+
T Consensus 574 ep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~-ad~i-i~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 574 SPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK-ADKI-LLLHEGVCYFYGTFS 632 (1490)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh-CCEE-EEEECCEEEEEcCHH
Confidence 99999999988887764 44443 3333 99988764 9999 999999988776543
No 378
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.31 E-value=3.8e-12 Score=97.26 Aligned_cols=86 Identities=31% Similarity=0.439 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|+|++|||||||+|.|+|... .+++.+++|..+..+.+.+++. .+.++|+||+......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK-----------------KFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE-----------------EEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee-----------------eEEEEeCCCCcccchh
Confidence 589999999999999999999754 3488999999997777777552 4689999999876543
Q ss_pred cc--chHHHHHHHHhhhcceeEEeec
Q 024748 105 GQ--GLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~--~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.. .....+++.++.+|.+++++++
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~ 89 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDA 89 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEEC
Confidence 22 1344577788999999999985
No 379
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.29 E-value=8.6e-13 Score=139.32 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=114.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|++++|+|+||||||||+++|+|.. +|..|.|.++|. -.|.||.....+.
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-----------~~~~G~i~~~g~------i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-----------DKVEGHVHMKGS------VAYVPQQAWIQND 713 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------ccCCcEEEECCE------EEEEcCCccccCC
Confidence 46788899999999999999999999999999999994 899999999872 2355665333467
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC-------ceeeecc------------cCCCchhHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP-------DIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~-------~~~~l~~------------~~~P~~~i~ild 151 (263)
++.|++.++..... ....+.++.+.. ...++.+.+. ....+++ ..+| +++++|
T Consensus 714 Ti~eNI~~g~~~~~-----~~~~~~~~~~~l-~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~--~illLD 785 (1522)
T TIGR00957 714 SLRENILFGKALNE-----KYYQQVLEACAL-LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA--DIYLFD 785 (1522)
T ss_pred cHHHHhhcCCccCH-----HHHHHHHHHhCC-HHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEc
Confidence 89999987653211 111222222211 1111111100 0112332 3566 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHH--hhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKS--MKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~--~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
||+...|....++..+.+.+. ...++ +|+...+.. ||+| .+|++|++...|+.+
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~i-i~l~~G~i~~~g~~~ 846 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVI-IVMSGGKISEMGSYQ 846 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEE-EEecCCeEEeeCCHH
Confidence 999999999888777766432 11233 399888765 9999 999999988777643
No 380
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=1.4e-12 Score=130.92 Aligned_cols=180 Identities=15% Similarity=0.236 Sum_probs=125.5
Q ss_pred CCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-----HHhhh--c
Q 024748 8 SKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----WLCQL--F 80 (263)
Q Consensus 8 ~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-----~l~~~--~ 80 (263)
-.+.+-.+.++.+++.|+.+|||||+||||||.+.+|-+.+ +|+.|.|.++|.+++ ++... .
T Consensus 1000 RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-----------dp~~G~V~IDg~dik~lnl~~LR~~i~l 1068 (1228)
T KOG0055|consen 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-----------DPDAGKVKIDGVDIKDLNLKWLRKQIGL 1068 (1228)
T ss_pred CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-----------CCCCCeEEECCcccccCCHHHHHHhcce
Confidence 34577888999999999999999999999999999999996 999999999998764 33332 5
Q ss_pred CCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEe---eccCCC---ceeeecc------------cCC
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVL---RAFEDP---DIIHVDD------------SVD 142 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv---~~~~~~---~~~~l~~------------~~~ 142 (263)
+.|+...++.|+.|+..++... -...++.++.+.+++-=++. ..++.. .=..++| ..|
T Consensus 1069 VsQEP~LF~~TIrENI~YG~~~----vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1069 VSQEPVLFNGTIRENIAYGSEE----VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eccCchhhcccHHHHHhccCCC----CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 5666555689999999998211 11234445555444311111 111110 0123443 468
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
| +|+++||.+..+|-+.-+-..+.+.+.. .+.| |.+..+ +-||.| .++++|+++..|+-+
T Consensus 1145 P--kILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTI-qnaD~I-~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1145 P--KILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTI-QNADVI-AVLKNGKVVEQGTHD 1209 (1228)
T ss_pred C--CeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhh-hcCCEE-EEEECCEEEecccHH
Confidence 8 8999999999999876333333333332 3333 988887 789999 999999999988643
No 381
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.5e-12 Score=119.35 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=121.7
Q ss_pred CCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-------hc
Q 024748 8 SKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LF 80 (263)
Q Consensus 8 ~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-------~~ 80 (263)
+.++|-...++..+.+|..++||||+|+||||++++|.++. +.++|.|.++|+++....+ .+
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-----------dv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-----------DVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-----------hccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 34588999999999999999999999999999999999995 8999999999999876544 27
Q ss_pred CCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC---ceeeecc------------cCCCch
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP---DIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~---~~~~l~~------------~~~P~~ 145 (263)
.||+.+.++=++.++..+.+.....++.-..+ .+..--|.++..-+.+... .-+.++| ..+|
T Consensus 617 VPQDtvLFNdTI~yNIryak~~AsneevyaAA-kAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P-- 693 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAA-KAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP-- 693 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHHHH-HHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC--
Confidence 88887666778888888877655433322221 1222234444443333211 1122333 2457
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
.|.++||.++..|-..-......+.+.. .+.| |.++.+ --+|.| .++.+|.++..|.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLSTi-vnAD~I-Lvi~~G~IvErG~ 755 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLSTI-VNADLI-LVISNGRIVERGR 755 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehhe-ecccEE-EEEeCCeEeecCc
Confidence 6888899888888654333333344443 2222 766665 345666 7888898887764
No 382
>PLN03073 ABC transporter F family; Provisional
Probab=99.24 E-value=1.5e-12 Score=128.02 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=51.4
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
..+| +++++|||+...|+.......+.+.+... .-.+|+...+..+|+++ .+|++|++. +.|+++
T Consensus 360 ~~~p--~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i-~~l~~g~i~~~~g~~~ 427 (718)
T PLN03073 360 FIEP--DLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDI-LHLHGQKLVTYKGDYD 427 (718)
T ss_pred hcCC--CEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCCHH
Confidence 4678 89999999999999998887777766421 01139999999999999 999999986 556653
No 383
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.23 E-value=1.5e-11 Score=99.84 Aligned_cols=85 Identities=55% Similarity=0.923 Sum_probs=69.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC-CcchHHHhhhcCCCCCCCcceehhhhhccccCcccccc
Q 024748 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (263)
Q Consensus 29 ivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 107 (263)
|+|++|||||||+|+|+|....+++++++|+.|+.|.+.+. + ..+.++|++|+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG-----------------ARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC-----------------CeEEEEeccccchhhhcCCC
Confidence 68999999999999999987766889999999999988776 4 25799999998754444344
Q ss_pred hHHHHHHHHhhhcceeEEeeccC
Q 024748 108 LGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 108 ~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+...+...++.+|.+++++|+.+
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccC
Confidence 55566777888999999999854
No 384
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.23 E-value=1.4e-12 Score=123.59 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=99.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC-cchHHHhhhcCCCCCCCcce
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g-~~~~~l~~~~~~~~~~~~~l 90 (263)
+-..+++.+|..|++||||||||+|||||||+|+|. ..|.+|.|.+.. ..+.++.+. ........
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-----------~~~~~G~v~~g~~v~igyf~Q~---~~~l~~~~ 401 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-----------LGPLSGTVKVGETVKIGYFDQH---RDELDPDK 401 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-----------cccCCceEEeCCceEEEEEEeh---hhhcCccC
Confidence 445678899999999999999999999999999998 478899888753 222221111 11111233
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhh-hcceeEEeeccCCCc--eeeecc--cCCCchhHHHHHHHhhhccHHHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRA-VDGIFHVLRAFEDPD--IIHVDD--SVDPVRDLEVISAELRLKDIEFMERR 165 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~d~~l~vv~~~~~~~--~~~l~~--~~~P~~~i~ilde~~~~~d~~~~~k~ 165 (263)
+++|...-...... ....+.++..+-. .+....-+..+..-+ -+.+.. ...| .++++|||+.-+|++.++..
T Consensus 402 t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p--NvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 402 TVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP--NLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred cHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC--CEEEEcCCCccCCHHHHHHH
Confidence 55554432221110 1111111211100 000111111111000 000000 2456 79999999999999988876
Q ss_pred HHHHHHHhhh--ccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 166 IEDVEKSMKR--SNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 166 ~~~~~~~~~~--~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
.+.+...... -.+|+...+..+|+++ ..++. .+. +.|.++
T Consensus 479 e~aL~~f~Gtvl~VSHDr~Fl~~va~~i-~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 479 EEALLDFEGTVLLVSHDRYFLDRVATRI-WLVED-KVEEFEGGYE 521 (530)
T ss_pred HHHHHhCCCeEEEEeCCHHHHHhhcceE-EEEcC-ceeEcCCCHH
Confidence 6665554211 0139999999999998 44444 433 346665
No 385
>COG2262 HflX GTPases [General function prediction only]
Probab=99.22 E-value=1.8e-11 Score=110.40 Aligned_cols=89 Identities=30% Similarity=0.515 Sum_probs=75.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
..|+|+|..|||||||||+|+|..+...+..|+|++|+.-.+.+.+. ..+.+.||+||+....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP- 255 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLP- 255 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCC-
Confidence 58999999999999999999999888899999999999999998752 2588999999998653
Q ss_pred ccchHHHH---HHHHhhhcceeEEeeccCC
Q 024748 105 GQGLGNSF---LSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 105 ~~~~~~~~---~~~~~~~d~~l~vv~~~~~ 131 (263)
..+...| ++.+..+|+++||+|+.+.
T Consensus 256 -~~LV~AFksTLEE~~~aDlllhVVDaSdp 284 (411)
T COG2262 256 -HPLVEAFKSTLEEVKEADLLLHVVDASDP 284 (411)
T ss_pred -hHHHHHHHHHHHHhhcCCEEEEEeecCCh
Confidence 3445444 5667789999999999764
No 386
>PTZ00243 ABC transporter; Provisional
Probab=99.21 E-value=3.5e-12 Score=134.76 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=108.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|++++|+|+||||||||+++|+|.. +|+.|.|.+.+ .+ .|.||.......
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-----------~~~~G~i~~~~----~i--~yv~Q~~~l~~~ 735 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-----------EISEGRVWAER----SI--AYVPQQAWIMNA 735 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCCcEEEECC----eE--EEEeCCCccCCC
Confidence 34577889999999999999999999999999999994 89999998743 12 244554222357
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcc--eeEEe-eccC---CCceeeecc------------cCCCchhHHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG--IFHVL-RAFE---DPDIIHVDD------------SVDPVRDLEVISA 152 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~--~l~vv-~~~~---~~~~~~l~~------------~~~P~~~i~ilde 152 (263)
++.|++.+...... ..+.+.++.+.+ .+..+ +..+ ......+++ ..+| +++++||
T Consensus 736 Tv~enI~~~~~~~~-----~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p--~illLDE 808 (1560)
T PTZ00243 736 TVRGNILFFDEEDA-----ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR--DVYLLDD 808 (1560)
T ss_pred cHHHHHHcCChhhH-----HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEcC
Confidence 89999887542211 111111221110 00000 0000 011112332 4567 8999999
Q ss_pred HhhhccHHHHHHHHHHH-HHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 153 ELRLKDIEFMERRIEDV-EKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 153 ~~~~~d~~~~~k~~~~~-~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
|+...|+...++..+.+ .... .+. +|+...+ ..||++ .+|++|++...|+.+
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~-~~ad~i-i~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVV-PRADYV-VALGDGRVEFSGSSA 866 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEE-EEEECCEEEEecCHH
Confidence 99999998766655432 2222 233 3998887 569999 999999988777653
No 387
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.20 E-value=5.6e-12 Score=123.46 Aligned_cols=162 Identities=11% Similarity=0.100 Sum_probs=101.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
+....++.++++|++++|+|+||||||||+++|+|+. +|..|.+.+++.. . ..|.||......-+
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-----------~~~~G~i~~~~~~--~--i~~v~Q~~~l~~~t 530 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-----------PVYGGRLTKPAKG--K--LFYVPQRPYMTLGT 530 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCeEeecCCC--c--EEEECCCCCCCCcC
Confidence 5677889999999999999999999999999999995 7888998876421 1 23555553222348
Q ss_pred hhhhhccccCccc---ccchHHHHHHHHhhhcceeEEeec---cCC--Cceeeecc------------cCCCchhHHHHH
Q 024748 92 IHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRA---FED--PDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 92 ~~d~~g~~~~~~~---~~~~~~~~~~~~~~~d~~l~vv~~---~~~--~~~~~l~~------------~~~P~~~i~ild 151 (263)
+.|++.+...... .......+.+.++.++.- ..++. ++. .....+++ ..+| ++.++|
T Consensus 531 v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p--~illLD 607 (659)
T TIGR00954 531 LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP--QFAILD 607 (659)
T ss_pred HHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC--CEEEEe
Confidence 8888876532110 000112223333333221 00110 000 00112232 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhh
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQ 196 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~ 196 (263)
||+...|+...+...+.+.+. +. +|+.+.+ +.||++ ..|+
T Consensus 608 Epts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~-~~~d~i-l~l~ 652 (659)
T TIGR00954 608 ECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLW-KYHEYL-LYMD 652 (659)
T ss_pred CCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHH-HhCCEE-EEEe
Confidence 999999999877766655542 32 3888865 678988 6664
No 388
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.19 E-value=1.3e-11 Score=105.66 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCcccc
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRL 203 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~ 203 (263)
.+|..+++++|||+...|+.......+.+.+....+.+ |+.+.+ .+||++ .+| ++|+++..
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i-~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHV-IDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEE-EEeCCCccccCCEEEec
Confidence 45522699999999999999998888888876544433 999876 589999 888 66766654
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.19 E-value=6.1e-12 Score=133.24 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=115.5
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc-ceeeeCCcchHHHhhhcCCCCCCCc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPA 88 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~-G~i~~~g~~~~~l~~~~~~~~~~~~ 88 (263)
+.+..+.++.++++|+.++|+|++|||||||+++|+|.. +|.. |.|.+.+. -.|.+|...-.
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-----------~~~~GG~I~l~~~------Iayv~Q~p~Lf 691 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-----------PPRSDASVVIRGT------VAYVPQVSWIF 691 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-----------ccCCCceEEEcCe------EEEEcCccccC
Confidence 356788999999999999999999999999999999995 8888 89987542 23677775555
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC---Cce----eeecc------------cCCCchhHHH
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED---PDI----IHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~---~~~----~~l~~------------~~~P~~~i~i 149 (263)
+-++.|++-++.... ..++.+.++.|.+. ..+..+.+ ..+ ..++| ..+| ++++
T Consensus 692 ngTIreNI~fg~~~d-----~e~y~~vl~a~~L~-~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~--~IlL 763 (1622)
T PLN03130 692 NATVRDNILFGSPFD-----PERYERAIDVTALQ-HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS--DVYI 763 (1622)
T ss_pred CCCHHHHHhCCCccc-----HHHHHHHHHHhCcH-HHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC--CEEE
Confidence 789999999886532 12333344444221 11111111 001 12333 3556 8999
Q ss_pred HHHHhhhccHHHHHHHHHH-HHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIED-VEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~-~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+||++...|...-++..+. +.... +++ ||+...+ ..||+| .+|++|++...|+.+
T Consensus 764 LDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l-~~aD~I-i~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 764 FDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFL-SQVDRI-ILVHEGMIKEEGTYE 824 (1622)
T ss_pred ECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHH-HhCCEE-EEEeCCEEEEeCCHH
Confidence 9999999998865555433 33332 233 3888654 669999 899999998777654
No 390
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.18 E-value=4.8e-11 Score=107.23 Aligned_cols=172 Identities=17% Similarity=0.126 Sum_probs=101.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----HhhhcCCCCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQLFKPKSAVP 87 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~~~~~~~~~~ 87 (263)
...++..+|+.|+.|-|+|.||||||||+++|+|++ .|++|.|.++|+.++. ....|. .++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-----------~PqsG~I~ldg~pV~~e~ledYR~LfS---avF 403 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-----------QPQSGEILLDGKPVSAEQLEDYRKLFS---AVF 403 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-----------CCCCCceeECCccCCCCCHHHHHHHHH---HHh
Confidence 346788999999999999999999999999999996 8999999999987632 111110 011
Q ss_pred cceehhhh-hccccCcccccchHHHHHHHHhhhcceeEEeeccCCCc--------eeeecccCCCchhHHHHHHHhhhcc
Q 024748 88 AFLEIHDI-AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--------IIHVDDSVDPVRDLEVISAELRLKD 158 (263)
Q Consensus 88 ~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~--------~~~l~~~~~P~~~i~ilde~~~~~d 158 (263)
..+.++|. .+.-..+ ..+...+.++.++.++..-..=+.|...+ +.++- +.--.++|+++||+-.--|
T Consensus 404 sDyhLF~~ll~~e~~a--s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~-AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 404 SDYHLFDQLLGPEGKA--SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLL-ALLEERDILVLDEWAADQD 480 (546)
T ss_pred hhHhhhHhhhCCccCC--ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHH-HHHhhCCeEEeehhhccCC
Confidence 12222222 2211111 12233344444444432111111111111 00000 1111237999999999999
Q ss_pred HHHHHHHHHHH-HHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 159 IEFMERRIEDV-EKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 159 ~~~~~k~~~~~-~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
|.++....+.+ ..+++.|+| |+..- -..+||+ ..+.+|+++..
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y-F~~ADrl-l~~~~G~~~e~ 529 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHY-FIHADRL-LEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCchh-hhhHHHH-HHHhcCceeec
Confidence 99987776544 344456665 55433 3567888 88889987644
No 391
>PLN03232 ABC transporter C family member; Provisional
Probab=99.16 E-value=1.2e-11 Score=130.49 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=112.1
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcccee-eeCCcchHHHhhhcCCCCCCCc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-NIPDERFEWLCQLFKPKSAVPA 88 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i-~~~g~~~~~l~~~~~~~~~~~~ 88 (263)
+.+..+.++.++++|+.++|+|++|||||||+++|+|.. +|..|.+ .+.+ .-.|.+|...-.
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-----------~~~~G~i~~~~~------~Iayv~Q~p~Lf 691 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------SHAETSSVVIRG------SVAYVPQVSWIF 691 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------cccCCCEEEecC------cEEEEcCccccc
Confidence 356788999999999999999999999999999999995 7877644 3322 113666765545
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC---Cce----eeecc------------cCCCchhHHH
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED---PDI----IHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~---~~~----~~l~~------------~~~P~~~i~i 149 (263)
+-++.||..++.... .+++.+.++.|... ..+..+.+ ..+ ..++| ..+| ++++
T Consensus 692 ~gTIreNI~fg~~~~-----~e~~~~vl~~~~L~-~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~--~IlL 763 (1495)
T PLN03232 692 NATVRENILFGSDFE-----SERYWRAIDVTALQ-HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS--DIYI 763 (1495)
T ss_pred cccHHHHhhcCCccC-----HHHHHHHHHHhCCH-HHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC--CEEE
Confidence 679999999886432 12333333333211 11122211 111 12333 3566 8999
Q ss_pred HHHHhhhccHHHHHHHHHH-HHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 150 ISAELRLKDIEFMERRIED-VEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~-~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+||++...|...-++..+. +.... .++ ||....+ ..||+| .+|++|++...|+.+
T Consensus 764 LDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l-~~aD~I-i~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 764 FDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFL-PLMDRI-ILVSEGMIKEEGTFA 824 (1495)
T ss_pred EcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhH-HhCCEE-EEEeCCEEEEecCHH
Confidence 9999999998876655544 33222 233 3888764 669999 999999998877643
No 392
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.15 E-value=8.6e-11 Score=106.77 Aligned_cols=91 Identities=31% Similarity=0.472 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.+..|+|+|.+|||||||||.|+|....+++++|+|++|..+.+.+++. ..+.++||+|+....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccC
Confidence 3479999999999999999999998755589999999999998888531 258899999996532
Q ss_pred cc-ccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HE-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.. ........++.++.+|.+++|+|+.
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~s 279 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDAS 279 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 21 1111233455678899999999973
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1.4e-11 Score=126.24 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=112.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhh-------cCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-------FKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~-------~~~~ 83 (263)
.+.+..++..|++|++|||||+.|||||||+++|.++ .+|..|.|.++|.++..++-. .-||
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-----------~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-----------VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-----------cCccCCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 4567788999999999999999999999999999999 599999999999987664432 5566
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-CCc----------------eeeecccCCCchh
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-DPD----------------IIHVDDSVDPVRD 146 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~----------------~~~l~~~~~P~~~ 146 (263)
+.+-+.=|++.|..=... .-..++.++++.|.+--.+. ... .-+ ++-+..+.--.++
T Consensus 1222 dPvLFsGTvR~NLDPf~e-----~sD~~IW~ALe~~~Lk~~v~-~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1222 DPVLFSGTVRFNLDPFDE-----YSDDEIWEALERCQLKDVVS-SLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CCceecCccccccCcccc-----cCHHHHHHHHHHhChHHHHh-hCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 644334444444332111 11234555555553311111 100 000 0001111112238
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
|+++||.+...|++.=.-..+.+++.. +..| |....+. =|||| .+|++|+++..|++.
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVm-d~DrV-lVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVM-DSDRV-LVLDAGRVVEFDSPA 1358 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhh-hcCeE-EEeeCCeEeecCChH
Confidence 999999999999886444444444433 3333 8777764 48999 999999998876554
No 394
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.7e-11 Score=107.85 Aligned_cols=93 Identities=33% Similarity=0.447 Sum_probs=78.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
-++..|-.++|+|+||+|||||+|+|+.-.+++ ++.|+||++.....+.++|. .+.+.||+|
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~-----------------~v~L~DTAG 325 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV-----------------PVRLSDTAG 325 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe-----------------EEEEEeccc
Confidence 356778999999999999999999999999998 99999999999999999984 488999999
Q ss_pred cccCccc-ccchH-HHHHHHHhhhcceeEEeec
Q 024748 98 LVRGAHE-GQGLG-NSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 98 ~~~~~~~-~~~~~-~~~~~~~~~~d~~l~vv~~ 128 (263)
+...... -+.++ ++....++.+|.++.++++
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 9883222 23333 5567788999999999998
No 395
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.13 E-value=1.4e-10 Score=110.57 Aligned_cols=87 Identities=33% Similarity=0.460 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc--
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-- 103 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~-- 103 (263)
.++++|.||+|||||||.|||....++|+|++|.+...|.....|. .++++|+||.+.-..
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~-----------------~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH-----------------EIEIVDLPGTYSLTAYS 67 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc-----------------eEEEEeCCCcCCCCCCC
Confidence 5999999999999999999999999999999999999999998873 489999999986432
Q ss_pred cccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
..+...+.++. -...|+++.++|+..
T Consensus 68 ~DE~Var~~ll-~~~~D~ivnVvDAtn 93 (653)
T COG0370 68 EDEKVARDFLL-EGKPDLIVNVVDATN 93 (653)
T ss_pred chHHHHHHHHh-cCCCCEEEEEcccch
Confidence 23444444433 156799999999864
No 396
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.13 E-value=3.1e-11 Score=94.68 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=44.1
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~ 74 (263)
..+++.+++|++++|+|+||||||||+++|+|.. .|..|.|.+++..+.
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-----------~~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-----------PPDSGSILINGKDIS 50 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-----------HESEEEEEETTEEGT
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccc-----------ccccccccccccccc
Confidence 4578899999999999999999999999999994 789999999987653
No 397
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=5.8e-11 Score=95.61 Aligned_cols=168 Identities=15% Similarity=0.228 Sum_probs=100.1
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc--chH-------------
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE--RFE------------- 74 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~--~~~------------- 74 (263)
..|-.+.++.+++.|+++++=||+|+|||||+++|-|.+ .|++|.|.+... -++
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-----------~~d~G~I~v~H~g~~vdl~~a~pr~vl~vR 91 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-----------LPDEGQILVRHEGEWVDLVTAEPREVLEVR 91 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-----------CCCCceEEEEeCcchhhhhccChHHHHHHH
Confidence 356778999999999999999999999999999999996 899999987532 111
Q ss_pred --HHhhhcCCCCCCCcceehhhhhc---cccCccc--ccchHHHHHHHHhhhcceeEEeec-cCCC--ceeeecc--cCC
Q 024748 75 --WLCQLFKPKSAVPAFLEIHDIAG---LVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRA-FEDP--DIIHVDD--SVD 142 (263)
Q Consensus 75 --~l~~~~~~~~~~~~~l~~~d~~g---~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~-~~~~--~~~~l~~--~~~ 142 (263)
.++++-|.-+.+| .+...|.+. +..+... .......++..+.....++.+.-+ |..- .-..+.. ..|
T Consensus 92 r~TiGyVSQFLRviP-RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd 170 (235)
T COG4778 92 RTTIGYVSQFLRVIP-RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVD 170 (235)
T ss_pred HhhhHHHHHHHHhcc-CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhcc
Confidence 0111111111222 233333332 2222111 011112223333333333333322 2111 1000100 122
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHH
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 191 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i 191 (263)
- .|+++|||+...|.....-..+.+.+.+..+.+ |+-+--+.+|||+
T Consensus 171 ~--pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 171 Y--PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred C--ceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhe
Confidence 2 488999999999998888888888887766654 9988889999988
No 398
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=2.9e-11 Score=102.51 Aligned_cols=91 Identities=30% Similarity=0.527 Sum_probs=83.9
Q ss_pred CCC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSH-LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g-~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
+.| .+|++||-|.+|||||+..|++.....++|.|||+.-..|.+.++| +++++.|.||++.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIie 121 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIE 121 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCccccc
Confidence 344 5999999999999999999999987789999999999999999988 5799999999999
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
+++.+.+.++++....+.+|+++.|+|+.
T Consensus 122 GAsqgkGRGRQviavArtaDlilMvLDat 150 (364)
T KOG1486|consen 122 GASQGKGRGRQVIAVARTADLILMVLDAT 150 (364)
T ss_pred ccccCCCCCceEEEEeecccEEEEEecCC
Confidence 99999999999999999999999999985
No 399
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=4.1e-11 Score=120.91 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=124.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCCCCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKSAVP 87 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~~~~ 87 (263)
=++.|+|-+++|...||+|.+|||||||||+|+|.. |.--..|.|.++|....+. ..-.+.++.--
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS 876 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCchhhhccccceeecccccC
Confidence 456788889999999999999999999999999984 2345689999999876531 11233334334
Q ss_pred cceehhhhhccccCcccccc--------hHHHHHHHH---hhhcceeEEee----ccCCCcee-eecccCCCchhHHHHH
Q 024748 88 AFLEIHDIAGLVRGAHEGQG--------LGNSFLSHI---RAVDGIFHVLR----AFEDPDII-HVDDSVDPVRDLEVIS 151 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~~~--------~~~~~~~~~---~~~d~~l~vv~----~~~~~~~~-~l~~~~~P~~~i~ild 151 (263)
+++||.|.+-+......... ..+++.+.+ .-+|+++-... ..+...+. -+.-..+|. -|+.+|
T Consensus 877 ~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~-~ilFLD 955 (1391)
T KOG0065|consen 877 PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS-SILFLD 955 (1391)
T ss_pred cccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc-eeEEec
Confidence 68999999887654432111 112222222 12343333321 11111111 122245673 488899
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHH-HHHHHHHHHHHHhhc-CCccccCCCCHHHHHHHh
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQD-GKDVRLGDWKAADIEILN 215 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~-~i~~l~d~i~~~L~~-G~~~~~g~~~d~~~e~ir 215 (263)
||+.++|.....-....++++...|.+ |+.+ .+-+..|++ .+|+. |+.+|.|++.+....+|.
T Consensus 956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L-LLLkrGGqtVY~G~lG~~s~~li~ 1025 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDEL-LLLKRGGQTVYFGPLGENSSKLIE 1025 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH-HHHhcCCeEEEecCcccccHHHHH
Confidence 999999988777777777888777665 7644 677888999 67765 678899998766554444
No 400
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.08 E-value=1.2e-10 Score=106.55 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
...-++||||+||+|||||+|+|+|....+ ++.|+||+++....+.++|+ .+.++||+|+-+
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~-----------------~~~liDTAGiRr 238 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR-----------------KYVLIDTAGIRR 238 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe-----------------EEEEEECCCCCc
Confidence 455799999999999999999999999988 99999999999988888874 479999999987
Q ss_pred Cccccc----chHHHHHHHHhhhcceeEEeeccCC
Q 024748 101 GAHEGQ----GLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
...-.. ....+.+.++..+|.++.|+|+.+.
T Consensus 239 k~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~ 273 (444)
T COG1160 239 KGKITESVEKYSVARTLKAIERADVVLLVIDATEG 273 (444)
T ss_pred ccccccceEEEeehhhHhHHhhcCEEEEEEECCCC
Confidence 654321 1224567888999999999999754
No 401
>PRK11058 GTPase HflX; Provisional
Probab=99.08 E-value=2e-10 Score=106.89 Aligned_cols=90 Identities=28% Similarity=0.413 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-.|+|+|.+|||||||||.|+|....+++++|+|+++..+.+.+.+. ..+.++||+|+......
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCCH
Confidence 47999999999999999999998877789999999999988887652 14678999999653211
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
........++.++.+|.+++|+|+.+
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~ 288 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAAD 288 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCC
Confidence 10111223456788999999999864
No 402
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=89.42 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=89.9
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCCCCCCc
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVPA 88 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~~~~~~ 88 (263)
.++.+|.+|+++.|+||+|||||||+..+.|.... --..+|++.+++++++-+. ..||. ..++.
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~--------~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD-~lLFp 90 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG--------QFSCTGELWLNEQRLDMLPAAQRQIGILFQD-ALLFP 90 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhhccc--------CcceeeEEEECCeeccccchhhhheeeeecc-ccccc
Confidence 36788999999999999999999999999998532 1345899999999876432 23443 33445
Q ss_pred ceehhhhhccccCcc-cccchHHHHHHHHhhhcceeEEeeccC-CCceeeecc------------cCCCchhHHHHHHHh
Q 024748 89 FLEIHDIAGLVRGAH-EGQGLGNSFLSHIRAVDGIFHVLRAFE-DPDIIHVDD------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~~~~l~~------------~~~P~~~i~ilde~~ 154 (263)
++++-++..|.-... ++....+....++.++. +-.+|+ ++. .+++ ...| +..++|||+
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~g----L~g~f~~dP~--tlSGGQrARvaL~R~Lla~P--k~lLLDEPF 162 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSG----LDGAFHQDPA--TLSGGQRARVALLRALLAQP--KALLLDEPF 162 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhc----cchhhhcChh--hcCcchHHHHHHHHHHHhCc--ceeeeCCch
Confidence 888888887765443 23333333444444442 123332 221 1121 2447 899999999
Q ss_pred hhccHHHHHHHHHHH
Q 024748 155 RLKDIEFMERRIEDV 169 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~ 169 (263)
+-.|...+....+.+
T Consensus 163 S~LD~ALR~qfR~wV 177 (213)
T COG4136 163 SRLDVALRDQFRQWV 177 (213)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999988776665543
No 403
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=4.7e-10 Score=90.79 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=106.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc---c--hHHHhh--------
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---R--FEWLCQ-------- 78 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~---~--~~~l~~-------- 78 (263)
-.-+.+++.+.+|+..||||.+|||||||+++|++. +.|+.|.|.+... . +..++.
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-----------l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-----------LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc-----------cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 345789999999999999999999999999999998 5899999987532 1 111111
Q ss_pred ---hcC---CCCCCCcceehhhhhccccCccccc---chHHHHHHHHhhhcceeEEeeccCCCceeeecc----------
Q 024748 79 ---LFK---PKSAVPAFLEIHDIAGLVRGAHEGQ---GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD---------- 139 (263)
Q Consensus 79 ---~~~---~~~~~~~~l~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~---------- 139 (263)
-|. |...+.-.++.--++|-...+.... .........++.+..-...+|- .+ ..+++
T Consensus 89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD--~P--rtFSGGMqQRLQiAR 164 (258)
T COG4107 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDD--LP--RTFSGGMQQRLQIAR 164 (258)
T ss_pred hccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccC--cc--cccchHHHHHHHHHH
Confidence 021 2222221222222222111000000 1112233344444432222211 01 11121
Q ss_pred --cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-c-----cchhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 140 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-S-----NDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 140 --~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~-----~~h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
...| .+.++|||+-+.|.....+.++.++.+... + .||++.-+.-+.+|+ .++++|.++..|
T Consensus 165 nLVt~P--rLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rl-mvmk~g~vve~G 234 (258)
T COG4107 165 NLVTRP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRL-MVMKQGQVVESG 234 (258)
T ss_pred HhccCC--ceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcc-eeecCCCEeccc
Confidence 2346 788899999999999999999988877532 1 249999988888999 999999887664
No 404
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.6e-10 Score=104.63 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=116.5
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhh-------cCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-------FKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~-------~~~ 82 (263)
..|-...++..++.|.+++++|++|+||||++++|.+++ ++++|.|.++|++++...+. ..|
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-----------D~~sG~I~id~qdir~vtq~slR~aIg~VP 343 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-----------DVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-----------CCcCceEEEcchhHHHhHHHHHHHHhCcCc
Confidence 466778899999999999999999999999999999995 99999999999998764432 678
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC---ceeeecc------------cCCCchhH
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP---DIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~---~~~~l~~------------~~~P~~~i 147 (263)
|+.+.++=+..-+..+++.....+... ...+..+..+.+...=+.++.. .-+.+++ ..+| .|
T Consensus 344 QDtvLFNDti~yni~ygr~~at~eev~-aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p--~i 420 (497)
T COG5265 344 QDTVLFNDTIAYNIKYGRPDATAEEVG-AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP--PI 420 (497)
T ss_pred ccceehhhhHHHHHhccCccccHHHHH-HHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC--CE
Confidence 876555556666666665543322221 1122222222221111111110 0112222 2457 79
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++||.++.+|-..-......+.+.. .+.| |.++.+ --+|.| .+|++|+++..|.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti-~~adei-ivl~~g~i~erg~ 480 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTI-IDADEI-IVLDNGRIVERGT 480 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhc-cCCceE-EEeeCCEEEecCc
Confidence 99999999999765444444444443 3332 777665 335778 8999999988875
No 405
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=1.4e-10 Score=118.92 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=118.4
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
..|....++..++.|+.+||+|+.|||||+|+.+|+|. .+..+|.+.++|. ..|.||..--.+
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-----------m~~~sG~v~v~gs------iaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-----------MPKLSGSVAVNGS------VAYVPQQPWIQN 595 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-----------cccccceEEEcCe------EEEeccccHhhC
Confidence 34488899999999999999999999999999999999 4889999999985 347777755557
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcce--eEEeeccCCCce----eeecc----------cCCCchhHHHHHHH
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--FHVLRAFEDPDI----IHVDD----------SVDPVRDLEVISAE 153 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~--l~vv~~~~~~~~----~~l~~----------~~~P~~~i~ilde~ 153 (263)
-++.||+-|+.+..+ +++.+.++.|.+- +..+..-+...+ ..++| +.--..|++++|.|
T Consensus 596 gTvreNILFG~~~d~-----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp 670 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDE-----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP 670 (1381)
T ss_pred CcHHHhhhcCccccH-----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc
Confidence 899999999876642 3344444444321 111111011111 12333 22222389999999
Q ss_pred hhhccHHHHHHHHHHH-HHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 154 LRLKDIEFMERRIEDV-EKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~-~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+...|...-....+.. .... .++ ||... ..+-+|.| .+|++|++...|+++
T Consensus 671 lSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~-~L~~ad~I-ivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 671 LSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ-FLPHADQI-IVLKDGKIVESGTYE 727 (1381)
T ss_pred chhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh-hhhhCCEE-EEecCCeEecccCHH
Confidence 9999987655555432 2222 333 38444 44778999 999999999999876
No 406
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.97 E-value=3.2e-09 Score=93.48 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.-.+.|-|+||+|||||++.|++..+.+++|||||..-.-|.+...+ ..++++||||+....-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDRPl 230 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCCCh
Confidence 35889999999999999999999999999999999988888877654 3589999999976543
Q ss_pred -cccchHHHHHHHHhh-hcceeEEeecc
Q 024748 104 -EGQGLGNSFLSHIRA-VDGIFHVLRAF 129 (263)
Q Consensus 104 -~~~~~~~~~~~~~~~-~d~~l~vv~~~ 129 (263)
.......+...+++. .+++++++|..
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~S 258 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPS 258 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCc
Confidence 233344454445543 56678887764
No 407
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.96 E-value=1.8e-09 Score=90.40 Aligned_cols=91 Identities=33% Similarity=0.475 Sum_probs=65.3
Q ss_pred CC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SH-LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g-~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
++ .+|+|+|++|||||||+|.+++......+.+++|+.+..+.+.+.+. ..+.++|++|+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccccC
Confidence 44 59999999999999999999998765677788888888777766542 15889999998653
Q ss_pred cccc-cchHHHHHHHHhhhcceeEEeecc
Q 024748 102 AHEG-QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.... ..........+..+|.++.++|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~ 131 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDAS 131 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 2211 011122234456789899998873
No 408
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.1e-10 Score=105.18 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=119.0
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH--------hhhcCCCC-
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS- 84 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l--------~~~~~~~~- 84 (263)
..+++..+.+||++||.|.-|||+|=|+++|.|. ..+..|.|.++|+++... +-.|.|..
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~-----------~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDR 343 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGA-----------RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDR 343 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC-----------CcCCCceEEECCEEccCCCHHHHHHcCCEeCCccc
Confidence 4689999999999999999999999999999998 378899999999866421 22366653
Q ss_pred ---CCCcceehhhhhccccCcc-ccc-chHHH-HHHHHhhhcceeEEeecc-CCCceeeecc------------cCCCch
Q 024748 85 ---AVPAFLEIHDIAGLVRGAH-EGQ-GLGNS-FLSHIRAVDGIFHVLRAF-EDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 85 ---~~~~~l~~~d~~g~~~~~~-~~~-~~~~~-~~~~~~~~d~~l~vv~~~-~~~~~~~l~~------------~~~P~~ 145 (263)
.+...+.+.+|..+..... ... .+..+ -.+..+..-.-+. +++. .+..+..+++ ..+|
T Consensus 344 k~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~-Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p-- 420 (500)
T COG1129 344 KSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR-IKTPSPEQPIGTLSGGNQQKVVLARWLATDP-- 420 (500)
T ss_pred ccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC-cccCCccchhhcCCchhhhhHHHHHHHhcCC--
Confidence 3444667777766651110 000 00000 0111111100011 1111 1122333444 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
+++++|||+.+.|.....+....+.++...+.+ -.+.++..+|||| .++.+|++...
T Consensus 421 ~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRI-lVm~~Gri~~e 482 (500)
T COG1129 421 KVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRI-LVMREGRIVGE 482 (500)
T ss_pred CEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEE-EEEECCEEEEE
Confidence 899999999999999988888888988877654 7899999999999 99999998763
No 409
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.94 E-value=2.5e-09 Score=84.67 Aligned_cols=89 Identities=27% Similarity=0.269 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
|.+++++|++|||||||++.|++.... .++.+++|.....+.+.+.+ ..+.++|++|+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-----------------EEEEEEECCCcCCCc
Confidence 678999999999999999999998654 36778888776666665543 257899999986543
Q ss_pred ccc-cchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEG-QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~-~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
... ..........+..+|.++.++++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 91 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDAS 91 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 221 111223445667899999999875
No 410
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.93 E-value=8.4e-10 Score=99.59 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=120.8
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------------H
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------L 76 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------------l 76 (263)
..++...++..+..|+.+||||.+|||||-..+.++|+...- .+ -.-+|.|.++|+++-. +
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~----~~--~~~sg~i~f~G~dll~~se~~lr~iRG~~I 95 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSP----AA--AHPSGSILFDGEDLLAASERQLRGVRGNKI 95 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCC----cc--cCccceeEEcChhhhcCCHHHHhhhcccce
Confidence 456788999999999999999999999999999999996321 11 1236889999987632 3
Q ss_pred hhhcCCCC-CCCcc----eehhhhhccccCcccccchHHHHHHHHhhhcce--eEEeeccCCC-------ce-eeecccC
Q 024748 77 CQLFKPKS-AVPAF----LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--FHVLRAFEDP-------DI-IHVDDSV 141 (263)
Q Consensus 77 ~~~~~~~~-~~~~~----l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~--l~vv~~~~~~-------~~-~~l~~~~ 141 (263)
+.+||... .+..- -++.+...++.+.... ....+.++.++.+..- -..+++|-.. .+ +.+.-+.
T Consensus 96 ~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~-~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 96 GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRA-AARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred EEEecccccccCcHhHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 33455332 11111 1244455555444321 1223344444443210 0111222100 00 1111257
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~------~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+| ++++.|||+...|.......++.++++...-+ ||++.-+.+++||+ .+|.+|+++..+.
T Consensus 175 ~P--~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV-~VM~~G~ivE~~~ 241 (534)
T COG4172 175 EP--DLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV-YVMQHGEIVETGT 241 (534)
T ss_pred CC--CeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhE-EEEeccEEeecCc
Confidence 88 99999999999999999998888888764322 49999999999999 9999999887764
No 411
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.93 E-value=2e-09 Score=100.62 Aligned_cols=95 Identities=28% Similarity=0.377 Sum_probs=72.8
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
-.+..|.+++|+|++|+|||||+|.|++...++ +++|++|++...+.+.++|. .+.++||+|
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~-----------------~v~l~DTaG 260 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI-----------------LIKLLDTAG 260 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE-----------------EEEEeeCCC
Confidence 345678999999999999999999999987654 88999999988888888763 478999999
Q ss_pred cccCcccccchH-HHHHHHHhhhcceeEEeeccC
Q 024748 98 LVRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+.......+..+ ......++.+|.++.|+|+..
T Consensus 261 ~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~ 294 (442)
T TIGR00450 261 IREHADFVERLGIEKSFKAIKQADLVIYVLDASQ 294 (442)
T ss_pred cccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 864321111111 234566788999999999853
No 412
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.92 E-value=3.6e-09 Score=88.30 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=59.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~--~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.++|+|++|||||||+|.|+|.....+. .+++|.....+...+.| ..+.++||||+.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~viDTPG~~d~~~ 64 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-----------------RRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-----------------eEEEEEECcCCCCccC
Confidence 5899999999999999999999765533 45677777777766655 2589999999987543
Q ss_pred cccchHHHH----HHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSF----LSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~----~~~~~~~d~~l~vv~~ 128 (263)
....+...+ .......|+++.++++
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~ 93 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPL 93 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEEC
Confidence 221222222 2223446777777765
No 413
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.92 E-value=3.2e-09 Score=97.88 Aligned_cols=177 Identities=20% Similarity=0.216 Sum_probs=127.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch-HH--------HhhhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-EW--------LCQLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~-~~--------l~~~~~ 81 (263)
.++.+.++..+..|+++||.|-.|-|-+-|+.+|+|+ +++..|.|.++|+++ .. .+..|.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl-----------r~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL-----------RKPASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC-----------CccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence 5778899999999999999999999999999999999 467789999999875 11 233477
Q ss_pred CCC----CCCcceehhhhhccccCccc-----c----cchHHHHHHHHhhhcceeEEeecc-CCCceeeecc--------
Q 024748 82 PKS----AVPAFLEIHDIAGLVRGAHE-----G----QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD-------- 139 (263)
Q Consensus 82 ~~~----~~~~~l~~~d~~g~~~~~~~-----~----~~~~~~~~~~~~~~d~~l~vv~~~-~~~~~~~l~~-------- 139 (263)
|.+ ..-..+++.|+.-+...... + ........+.++..|. ++- .......+++
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV-----r~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV-----RAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc-----cCCCCCcchhhcCCcceehhhh
Confidence 754 23346888888876543321 1 1111222334445542 211 1111223333
Q ss_pred ----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 ----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++.+|+.+.|....+...+++.+....+++ .+++++..+|||| .++.+|++....+.
T Consensus 415 aREl~~~p--~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrI-aVi~~Gri~~~~~~ 487 (501)
T COG3845 415 ARELARRP--DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRI-AVIYEGRIVGIVPP 487 (501)
T ss_pred hhhhccCC--CEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhhee-eeeeCCceeccccc
Confidence 4567 899999999999999999988888888777654 8899999999999 99999998766443
No 414
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.91 E-value=2.5e-09 Score=99.71 Aligned_cols=88 Identities=27% Similarity=0.298 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|+|++|+|||||+|.|+|...++ +++|++|+....+.+.+.|. .+.++||+|+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR-----------------EFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe-----------------EEEEEECCCCCCcchh
Confidence 48999999999999999999987654 78999999998888888763 4889999998643221
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...+.......++.+|.++.++|+..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~ 90 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGRE 90 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 12334456667889999999999854
No 415
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-09 Score=99.40 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=44.0
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR--SNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~--~~~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
.+| ||+++|||+..+|...+.=.-..+...... -.+|+...+..+|+.| .+++.-++- |.|.++
T Consensus 215 ~~p--DlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdI-IH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 215 AKP--DLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDI-IHLENLKLDYYKGNYS 281 (582)
T ss_pred cCC--CEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHH-HHHhhhhhhhhcCcHH
Confidence 457 899999999999976554433333333211 1139999999999999 888876654 448765
No 416
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.89 E-value=3.8e-09 Score=99.15 Aligned_cols=95 Identities=28% Similarity=0.286 Sum_probs=72.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
.++..|.+++|+|++|||||||+|.|+|...++ +++|++|+......+.++|. .+.++||+|
T Consensus 210 ~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~i~l~DT~G 272 (449)
T PRK05291 210 EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI-----------------PLRLIDTAG 272 (449)
T ss_pred HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe-----------------EEEEEeCCC
Confidence 345678899999999999999999999987654 88999999988888887662 478999999
Q ss_pred cccCcccccch-HHHHHHHHhhhcceeEEeeccC
Q 024748 98 LVRGAHEGQGL-GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+.......+.. ....+..++.+|.+++|+|+.+
T Consensus 273 ~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 273 IRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 86422111111 1234567889999999999854
No 417
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.87 E-value=2e-09 Score=100.06 Aligned_cols=176 Identities=12% Similarity=0.110 Sum_probs=95.5
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC-cchHHHhhhcCCCCCCCcceehh
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIH 93 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g-~~~~~l~~~~~~~~~~~~~l~~~ 93 (263)
..+...+..+.++++|||||||||||+++++|. +.|..|.+.-.- ..+.+..+.... ..+-.....
T Consensus 407 ~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd-----------l~p~~G~vs~~~H~~~~~y~Qh~~e--~ldl~~s~l 473 (614)
T KOG0927|consen 407 KKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD-----------LQPTIGMVSRHSHNKLPRYNQHLAE--QLDLDKSSL 473 (614)
T ss_pred hhhhcccCcccceeEecCCCCchhhhHHHHhhc-----------cccccccccccccccchhhhhhhHh--hcCcchhHH
Confidence 345577888899999999999999999999999 589999875432 122111111000 011111111
Q ss_pred hhhccccCcccccchHHHHHHHHhhhcce--eEE--eeccC---CCceeeec-ccCCCchhHHHHHHHhhhccHHHHHHH
Q 024748 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGI--FHV--LRAFE---DPDIIHVD-DSVDPVRDLEVISAELRLKDIEFMERR 165 (263)
Q Consensus 94 d~~g~~~~~~~~~~~~~~~~~~~~~~d~~--l~v--v~~~~---~~~~~~l~-~~~~P~~~i~ilde~~~~~d~~~~~k~ 165 (263)
++.. ...............+..+..- .++ +.... ...+++.- ....| .++++|||+...|++.+..+
T Consensus 474 e~~~---~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP--~lLlLDEPtnhLDi~tid~l 548 (614)
T KOG0927|consen 474 EFMM---PKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQP--HLLLLDEPTNHLDIETIDAL 548 (614)
T ss_pred HHHH---HhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCC--cEEEecCCCcCCCchhHHHH
Confidence 1111 0000001111122222222210 000 11110 01111110 12346 69999999999999988887
Q ss_pred HHHHHHHhhhc--cchhHHHHHHHHHHHHHHhhcCCccccCCCCH
Q 024748 166 IEDVEKSMKRS--NDKQLKIEHELCQRVKAWLQDGKDVRLGDWKA 208 (263)
Q Consensus 166 ~~~~~~~~~~~--~~h~~~~i~~l~d~i~~~L~~G~~~~~g~~~d 208 (263)
.+.+.+...-- .+|+...+..+.+++...-+.+...++|++.+
T Consensus 549 aeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 549 AEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred HHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 77666653100 24999999999999955555455556676643
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.86 E-value=1.1e-09 Score=100.20 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=89.0
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCC-Ccceehhhhh
Q 024748 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV-PAFLEIHDIA 96 (263)
Q Consensus 18 ~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~-~~~l~~~d~~ 96 (263)
.|.+..|+++|++||||-||||+.++|+|. ++|+.|. ..+ +...|.||... ..+.++.+..
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~-----------ikPdeg~--~~~-----~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGV-----------IKPDEGS--EED-----LKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcc-----------ccCCCCC--Ccc-----ceEeecceeecCCCCCcHHHHH
Confidence 466778999999999999999999999999 5899886 211 22235565522 2345555544
Q ss_pred ccccCc-ccccchHHHHHHHHhhhcceeEEeeccCCCc--eeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHh
Q 024748 97 GLVRGA-HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (263)
Q Consensus 97 g~~~~~-~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~--~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~ 173 (263)
.-.... .........+...+..-+.+=.-++....-+ -+.+.-+..-..|++++|||...+|.+++-.....+++++
T Consensus 423 ~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~ 502 (591)
T COG1245 423 RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFI 502 (591)
T ss_pred HHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHH
Confidence 322211 1111111111111111111111111110000 0000001112228999999999999987755555555555
Q ss_pred hhc-cc-----hhHHHHHHHHHHHHHHhhcCCcc
Q 024748 174 KRS-ND-----KQLKIEHELCQRVKAWLQDGKDV 201 (263)
Q Consensus 174 ~~~-~~-----h~~~~i~~l~d~i~~~L~~G~~~ 201 (263)
... ++ |+..-+.-+.||+ .+.+ |.+-
T Consensus 503 e~~~kta~vVdHDi~~~dyvsDr~-ivF~-GePg 534 (591)
T COG1245 503 ENNEKTALVVDHDIYMIDYVSDRL-IVFE-GEPG 534 (591)
T ss_pred hhcCceEEEEecceehhhhhhceE-EEEe-cCCC
Confidence 432 22 9998888888987 4443 5443
No 419
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-09 Score=92.06 Aligned_cols=109 Identities=29% Similarity=0.517 Sum_probs=93.1
Q ss_pred CCCc-EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSHL-KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g~-~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
+.|. ++|++|-|.+|||||+.-|+|...+++.|.|+|.....|++.+.| +.+.+.|.||+..
T Consensus 56 ktg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiie 118 (358)
T KOG1487|consen 56 KTGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIE 118 (358)
T ss_pred eecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhc
Confidence 4454 999999999999999999999999999999999999999998877 4689999999999
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccH
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~ 159 (263)
++..+.+.++++....+.|++++.++|+ ..|..--.++.+++.+..+
T Consensus 119 gakdgkgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 119 GAKDGKGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGI 165 (358)
T ss_pred ccccCCCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhccee
Confidence 9998889999999999999999999887 3465556666666665543
No 420
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.85 E-value=3.3e-08 Score=98.10 Aligned_cols=89 Identities=28% Similarity=0.375 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||||.|+|....++++|++|++...|.+..++ ..++++|+||.......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLTTI 66 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccccc
Confidence 4799999999999999999999988779999999999999877655 25899999998764321
Q ss_pred --ccchHHHHHH-H--HhhhcceeEEeeccC
Q 024748 105 --GQGLGNSFLS-H--IRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 --~~~~~~~~~~-~--~~~~d~~l~vv~~~~ 130 (263)
.....++... . .+.+|.++.|+|+.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ 97 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASN 97 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCc
Confidence 1122222211 1 246899999999864
No 421
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.85 E-value=1.2e-09 Score=91.72 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=25.4
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+..|++++|+||||||||||+|+|+|..
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44567999999999999999999999863
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.83 E-value=5e-09 Score=87.88 Aligned_cols=56 Identities=7% Similarity=-0.148 Sum_probs=39.5
Q ss_pred hHHHHHHHhhhccHHHHHHHHH-HHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCcccc
Q 024748 146 DLEVISAELRLKDIEFMERRIE-DVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRL 203 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~-~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~ 203 (263)
++.++||++...|+........ .++.....+. +|+ ..+.++|+++ ..+.+|.+.++
T Consensus 110 ~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~-~~l~~g~l~~~ 171 (200)
T cd03280 110 SLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKR-EGVENASMEFD 171 (200)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcC-CCeEEEEEEEe
Confidence 6888888999999887666543 3444443332 386 5677999998 78888877655
No 423
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.79 E-value=1.1e-08 Score=95.50 Aligned_cols=88 Identities=26% Similarity=0.260 Sum_probs=69.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|+|++|+|||||+|.|+|...++ +++|++|+....+.+.+.|. .+.++||+|+......
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGR-----------------EFILIDTGGIEPDDDG 65 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCc-----------------EEEEEECCCCCCcchh
Confidence 79999999999999999999987654 78899999988888887762 5899999998752211
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...+.......++.+|+++.++++..
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~ 92 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRA 92 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 11233445667789999999999854
No 424
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.76 E-value=2e-08 Score=95.00 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-+|+|||++|+|||||||.|+|...++ ++.|++|++...+.+.+.|. .+.++|++|+.....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR-----------------RFTVVDTGGWEPDAK 101 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc-----------------EEEEEeCCCcCCcch
Confidence 479999999999999999999976554 78899998887777777652 478899999763221
Q ss_pred c-ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~-~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. ...+.......++.+|.++.|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~ 129 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATV 129 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 1 11223344556789999999999864
No 425
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.76 E-value=1e-08 Score=90.05 Aligned_cols=89 Identities=28% Similarity=0.437 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
--.|++||..|||||||+|.|++......+..|.|++|+.-...++.. ..+-+.||+||.....
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDTvGFisdLP 241 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDTVGFISDLP 241 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC----------------cEEEEeechhhhhhCc
Confidence 358999999999999999999976555578999999998877776532 1466889999987653
Q ss_pred cccchH---HHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQGLG---NSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~~~---~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. .+. +..++.+..+|+++|++|.+.
T Consensus 242 ~--~LvaAF~ATLeeVaeadlllHvvDiSh 269 (410)
T KOG0410|consen 242 I--QLVAAFQATLEEVAEADLLLHVVDISH 269 (410)
T ss_pred H--HHHHHHHHHHHHHhhcceEEEEeecCC
Confidence 2 333 345778889999999999854
No 426
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.75 E-value=5.3e-09 Score=97.32 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=46.7
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHHhhcCC-ccccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR---SNDKQLKIEHELCQRVKAWLQDGK-DVRLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~---~~~h~~~~i~~l~d~i~~~L~~G~-~~~~g~~~ 207 (263)
..+| +++++|||+..+|++.+.=.-+.+.+.-.. -..|+.+.+-.+|..| ..|..++ ++|.|+++
T Consensus 237 f~kP--~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~I-i~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 237 FQKP--DLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNI-IHLDNKKLIYYEGNYD 305 (614)
T ss_pred hcCC--CEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhh-heecccceeeecCCHH
Confidence 3568 899999999999998665443434333211 0129999999999999 8888888 44557764
No 427
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.74 E-value=1.5e-08 Score=80.60 Aligned_cols=82 Identities=35% Similarity=0.477 Sum_probs=60.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc--cc
Q 024748 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE--GQ 106 (263)
Q Consensus 29 ivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~--~~ 106 (263)
|+|++|+|||||++.++|.....+.++++|+....+.+.+++. .+.++|+||+...... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~~~~~~ 63 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK-----------------EIEIVDLPGTYSLSPYSEDE 63 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe-----------------EEEEEECCCccccCCCChhH
Confidence 5899999999999999998756678899999988888877652 5889999998653321 11
Q ss_pred chHHHHHHHHhhhcceeEEeec
Q 024748 107 GLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 107 ~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+...+... +.+|.++.++|+
T Consensus 64 ~~~~~~~~~-~~~d~vi~v~d~ 84 (158)
T cd01879 64 KVARDFLLG-EKPDLIVNVVDA 84 (158)
T ss_pred HHHHHHhcC-CCCcEEEEEeeC
Confidence 122233322 578888888876
No 428
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.73 E-value=2.5e-08 Score=79.24 Aligned_cols=88 Identities=30% Similarity=0.329 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++++|++|||||||+|.++|...+. ++.+.+|.....+.....+ ..+.++|++|+.....
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 66 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPKK 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcchH
Confidence 579999999999999999999986543 4555555544444332221 2578999999875443
Q ss_pred c-ccchHHHHHHHHhhhcceeEEeecc
Q 024748 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~-~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. ...+.......+..+|.++.++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~d~i~~v~d~~ 93 (168)
T cd04163 67 KLGERMVKAAWSALKDVDLVLFVVDAS 93 (168)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 2 1112223445567888888888873
No 429
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.73 E-value=4.6e-08 Score=78.80 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=58.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|+|||||+|.|++.....++++++|..+..+.+.+.+ ..++++|++|+.......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCCccccC
Confidence 589999999999999999999876667788888777776655433 258999999985422211
Q ss_pred c-chHHHHHHHH-hhhcceeEEeecc
Q 024748 106 Q-GLGNSFLSHI-RAVDGIFHVLRAF 129 (263)
Q Consensus 106 ~-~~~~~~~~~~-~~~d~~l~vv~~~ 129 (263)
. .+.......+ ..+|+++.++++.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~ 90 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPS 90 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCC
Confidence 1 1111111111 2357778887763
No 430
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.72 E-value=2.8e-09 Score=89.32 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=34.7
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHH
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRV 191 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i 191 (263)
++.++|||+...|+.......+.+.+... +. +|+.+.+ +.||++
T Consensus 137 ~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 137 PFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHH-hhcceE
Confidence 68999999999999998888887777643 22 3888765 578877
No 431
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.71 E-value=1.9e-09 Score=91.38 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=42.7
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G 198 (263)
++.++|||+...|+...+...+.+.+....+. +|+.+.+..+|+++ .++++|
T Consensus 153 ~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i-~~~~~~ 209 (213)
T cd03279 153 EALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRL-EVIKTP 209 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEE-EEEecC
Confidence 79999999999999988888777777654343 39999999999988 777766
No 432
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.70 E-value=2.1e-08 Score=79.41 Aligned_cols=84 Identities=29% Similarity=0.294 Sum_probs=59.8
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc-cc
Q 024748 28 GIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-EG 105 (263)
Q Consensus 28 givG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~ 105 (263)
+++|.+|+|||||++.|++.... .++.+++|.......+.+.+ ..+.++|++|+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 58999999999999999987543 36777777766665555543 2588999999875432 11
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
..+.......++.+|.++.++++
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~ 86 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDG 86 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEec
Confidence 12233445567889999999886
No 433
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.68 E-value=3.1e-08 Score=98.07 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..|+|+|++|+|||||||.|+|...++ ++.|++|++...+...+.+. .+.++||+|+.....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT-----------------DFKLVDTGGWEADVE 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE-----------------EEEEEeCCCcCCCCc
Confidence 479999999999999999999987655 78899998877776666542 578899999874321
Q ss_pred c-ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~-~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. ...+..+....++.+|++++|+|+..
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQV 366 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 1 12234455567889999999999853
No 434
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.68 E-value=1.6e-08 Score=83.93 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=95.9
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------------Hhhh
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------LCQL 79 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------------l~~~ 79 (263)
|.--+.+..++.|.++-+||.||||||||+++|+|-.. .-.|.|.+.|+.... ++..
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----------v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGge 96 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----------VGGGVVQVLGRSAFHDTSLESSGDLSYLGGE 96 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----------ccCCeEEEcCcCccccccccccCceeEeccc
Confidence 44455677889999999999999999999999999742 223566665543211 0000
Q ss_pred ----cCCCCCCCc--ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC--ceeeecccCCCchhHHHHH
Q 024748 80 ----FKPKSAVPA--FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP--DIIHVDDSVDPVRDLEVIS 151 (263)
Q Consensus 80 ----~~~~~~~~~--~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~--~~~~l~~~~~P~~~i~ild 151 (263)
......+|- .+.+...+.-..+. .. .. +..+-.+-..|.-+.+=..++.. .+-...+...|+ +++++|
T Consensus 97 W~~~~~~agevplq~D~sae~mifgV~g~-dp-~R-re~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf-kVLLLD 172 (291)
T KOG2355|consen 97 WSKTVGIAGEVPLQGDISAEHMIFGVGGD-DP-ER-REKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF-KVLLLD 172 (291)
T ss_pred ccccccccccccccccccHHHHHhhccCC-Ch-hH-hhhhhhheeccceEEEeeccccchhhhHHHHhcccce-eEEEee
Confidence 000000110 11111111000000 00 11 11111112223322222222221 122333455676 677778
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|.+.-.|.-.+...++-+++-.+. +. ||..+.++.....+ .++..|++...-++
T Consensus 173 EVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl-~yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 173 EVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHL-VYIKSGKLVDNLKY 232 (291)
T ss_pred eeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhE-EEecCCeeeecccc
Confidence 877666666666666666555432 32 39999999999999 99999998765444
No 435
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.67 E-value=6.9e-08 Score=91.29 Aligned_cols=91 Identities=24% Similarity=0.338 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
..+++|+|++|||||||+|.|+|.... .+++|++|+.+....+.++|. .+.++||+|+.+..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~-----------------~~~l~DTaG~~~~~ 273 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK-----------------TWRFVDTAGLRRRV 273 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE-----------------EEEEEECCCccccc
Confidence 369999999999999999999998764 488999999998888877663 36789999986543
Q ss_pred cccc--chHH--HHHHHHhhhcceeEEeeccCC
Q 024748 103 HEGQ--GLGN--SFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 103 ~~~~--~~~~--~~~~~~~~~d~~l~vv~~~~~ 131 (263)
.... .... .....++.+|.++.|+|+.+.
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~ 306 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEP 306 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 3211 1111 112356789999999998643
No 436
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.67 E-value=5.1e-08 Score=77.88 Aligned_cols=82 Identities=26% Similarity=0.307 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~---~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+.++|+|++|||||||++.|+|..... ...+++|+......+.+.+ ...+.++|++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~~- 63 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHEK- 63 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChHH-
Confidence 579999999999999999999864221 1223445544444443321 12588999998532
Q ss_pred cccccchHHHHHHHHhhhcceeEEeecc
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
........++.+|.++.++++.
T Consensus 64 ------~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 64 ------FIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred ------HHHHHHhhhhcCCEEEEEEECC
Confidence 2233444567899999999873
No 437
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.67 E-value=8.3e-09 Score=90.01 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=47.3
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGD 205 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~ 205 (263)
+++++|||+.+.|+.......+.+.++...+.+ |+.+.+. .||++ ..| ..|++++.|+
T Consensus 192 ~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~i-i~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 192 TLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWI-IDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE-EEecCCcCCCCCEEEEeCC
Confidence 799999999999999999988888877655443 9998874 79998 888 6777777654
No 438
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.65 E-value=1.3e-07 Score=75.88 Aligned_cols=88 Identities=26% Similarity=0.333 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++++|.+|+|||||+|.|++..... .+.+++|+....+.+...+ ..+.++|++|+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKGK 65 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCccccc
Confidence 468999999999999999999876433 6677777766655555544 2478999999876533
Q ss_pred cccchH----HHHHHHHhhhcceeEEeecc
Q 024748 104 EGQGLG----NSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~~~~~----~~~~~~~~~~d~~l~vv~~~ 129 (263)
....+. ......++.+|.++.++++.
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~ 95 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDAT 95 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCC
Confidence 222211 22344567889999998873
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.61 E-value=4.6e-08 Score=73.60 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l 76 (263)
.++...++..+..|+.++|+|++|||||||++++. .|.+.+.|.++..+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------------~G~i~~~g~di~~~ 50 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------------KRKHRLVGDDNVEI 50 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------------CCeEEEeeEeHHHh
Confidence 35677889999999999999999999999999986 35677777666543
No 440
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.61 E-value=9.8e-08 Score=89.22 Aligned_cols=91 Identities=27% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....++|+|++|+|||||+|.|+|....+ ++.+++|+......+...+ ..+.++|++|+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-----------------QKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-----------------eeEEEEECCCCCCC
Confidence 35789999999999999999999987644 7788888877655555444 24789999998765
Q ss_pred cccccch----HHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~~~----~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.+....+ ....+..++.+|.++.|+|+..
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~ 267 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATE 267 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4432211 1234567789999999999864
No 441
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.61 E-value=2.4e-08 Score=95.26 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=89.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
.=.+....++++|+.+-|.|+||||||||+|+|+|+. +--+|.|..+.. ....|.||+.....-+
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-----------P~g~G~I~~P~~----~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-----------PWGSGRISMPAD----SALLFLPQRPYLPQGT 471 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-----------ccCCCceecCCC----CceEEecCCCCCCCcc
Confidence 4456778899999999999999999999999999996 334688877621 1235888885444558
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcce--eEEeeccCC-Cceeeecc----------cCCCchhHHHHHHHhhhcc
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--FHVLRAFED-PDIIHVDD----------SVDPVRDLEVISAELRLKD 158 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~--l~vv~~~~~-~~~~~l~~----------~~~P~~~i~ilde~~~~~d 158 (263)
+.|.+.+....+. .-...+.+.+..|++. ..-++..++ ..++...+ .+.| ++.++||.+...|
T Consensus 472 Lre~l~YP~~~~~--~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP--~~v~LDEATsALD 547 (604)
T COG4178 472 LREALCYPNAAPD--FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKP--KWVFLDEATSALD 547 (604)
T ss_pred HHHHHhCCCCCCC--CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCC--CEEEEecchhccC
Confidence 8888877665532 1112233333333221 001111100 11111111 3568 8999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 024748 159 IEFMERRIEDVEKSM 173 (263)
Q Consensus 159 ~~~~~k~~~~~~~~~ 173 (263)
.+......+.+++..
T Consensus 548 e~~e~~l~q~l~~~l 562 (604)
T COG4178 548 EETEDRLYQLLKEEL 562 (604)
T ss_pred hHHHHHHHHHHHhhC
Confidence 888777777666643
No 442
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.61 E-value=1.1e-07 Score=75.95 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++|+|++|||||||++.+++.....+..|.++.+.....+.+++.. ..+.++|++|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~----- 61 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQER----- 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcHH-----
Confidence 68999999999999999999887655556666666656666665432 2578999998322
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|+++.+.+.
T Consensus 62 --~~~~~~~~~~~~~~ii~v~d~ 82 (161)
T cd01861 62 --FRSLIPSYIRDSSVAVVVYDI 82 (161)
T ss_pred --HHHHHHHHhccCCEEEEEEEC
Confidence 111223345778888888765
No 443
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.60 E-value=8.7e-08 Score=83.15 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=49.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
.......|+|+|++|+|||||+|.|+|..... +.++.+|.........+.| ..++++||||+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCc
Confidence 34455799999999999999999999987643 5666666666554444444 25899999999
Q ss_pred ccCc
Q 024748 99 VRGA 102 (263)
Q Consensus 99 ~~~~ 102 (263)
....
T Consensus 90 ~~~~ 93 (249)
T cd01853 90 LESV 93 (249)
T ss_pred Ccch
Confidence 8653
No 444
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.59 E-value=1.4e-07 Score=93.34 Aligned_cols=90 Identities=28% Similarity=0.328 Sum_probs=68.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|||||||+|.|+|....+ +++|++|+.+....+.++|. .+.++||+|+.....
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~-----------------~~~liDTaG~~~~~~ 513 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE-----------------DWLFIDTAGIKRRQH 513 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC-----------------EEEEEECCCcccCcc
Confidence 589999999999999999999988654 88999999998887777663 467899999875443
Q ss_pred cccc--hH--HHHHHHHhhhcceeEEeeccCC
Q 024748 104 EGQG--LG--NSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 104 ~~~~--~~--~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
...+ .. ......++.+|.++.++|+...
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~ 545 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQP 545 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCC
Confidence 2211 11 1123456889999999998643
No 445
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.58 E-value=2.5e-08 Score=85.93 Aligned_cols=48 Identities=4% Similarity=-0.062 Sum_probs=36.7
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHh
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWL 195 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~----h~~~~i~~l~d~i~~~L 195 (263)
+++++|||+...|+...+..++.+.+... +.+ |+...+.++||++ .+|
T Consensus 182 ~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i-~~l 233 (243)
T cd03272 182 PFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKF-YGV 233 (243)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEE-EEE
Confidence 79999999999999999888888877643 332 4445677889887 443
No 446
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.57 E-value=1.7e-07 Score=87.44 Aligned_cols=89 Identities=30% Similarity=0.324 Sum_probs=68.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++++|.+|+|||||+|.|+|..... ++.+++|+.+....+...|. .+.++|++|+.....
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK-----------------KYLLIDTAGIRRKGK 235 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-----------------EEEEEECCCcccccc
Confidence 589999999999999999999987544 78899998887777766552 478999999876543
Q ss_pred cccch----HHHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQGL----GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~~----~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
....+ ....+..++.+|.++.|+|+.+
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~ 266 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATE 266 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 32111 1233556789999999999864
No 447
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.57 E-value=6.8e-08 Score=80.78 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+++|+|++|||||||+|+|+|..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999974
No 448
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.56 E-value=6.9e-08 Score=79.92 Aligned_cols=58 Identities=29% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~--~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
....|+|+|++|||||||+|.|++.. ...++.+++|+...... + ...+.++|++|+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~------------------~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V------------------NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c------------------CCeEEEeCCCCCCC
Confidence 34689999999999999999999863 23355555554332111 0 13689999999764
No 449
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=7.2e-08 Score=97.96 Aligned_cols=187 Identities=13% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh----hcCCCC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----LFKPKS 84 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~----~~~~~~ 84 (263)
+.-.-..++++.+++|+.+-++||||||||||+++|+|....- .-..|.|.++|.+...... .|.++.
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~--------~~~~~~isy~G~~~~e~~~~~~~aY~~e~ 197 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNF--------LKSSGEITYNGHDLKEFVPKKTVAYNSEQ 197 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCccc--------ccCCCceeECCCcccccccCceEEecccc
Confidence 4456788999999999999999999999999999999985211 1224588898877654322 355555
Q ss_pred -CCCcceehhhhhccccCcccc----cchH-HHHHHHHhhhcceeEEee---------------ccCC-C-ceeeecc-c
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEG----QGLG-NSFLSHIRAVDGIFHVLR---------------AFED-P-DIIHVDD-S 140 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~----~~~~-~~~~~~~~~~d~~l~vv~---------------~~~~-~-~~~~l~~-~ 140 (263)
.-.+.||+.+|..+....... .+.. .+...+ ..|.++.+++ .... . .-+...+ .
T Consensus 198 DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~ 275 (1391)
T KOG0065|consen 198 DVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275 (1391)
T ss_pred ccccceeEEeehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeee
Confidence 334689999999887544332 0111 111111 1222222221 1110 0 0011111 1
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-c------hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-D------KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-~------h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
.-|. .++.+||.+.+.|-...-.....++++..... + .-..++-++.|.| .+|.+|+++|.|+.+
T Consensus 276 v~~~-~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v-~lL~eG~~iy~Gp~d 347 (1391)
T KOG0065|consen 276 VGPA-SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDV-ILLSEGYQIYQGPRD 347 (1391)
T ss_pred ecCc-ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhe-eeeeccceEEeccHH
Confidence 1222 78999999999998766666666665543322 1 4456788999999 999999999998864
No 450
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=78.14 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~--~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
.+.-|+++|++|+|||||+|+|+|.. +-+|..|+.|..++-= .+. ..+.++|.||++-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVD------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--Eec------------------CcEEEEeCCCccc
Confidence 45689999999999999999999977 3458899998876532 222 2478999999975
Q ss_pred C
Q 024748 101 G 101 (263)
Q Consensus 101 ~ 101 (263)
.
T Consensus 83 A 83 (200)
T COG0218 83 A 83 (200)
T ss_pred c
Confidence 3
No 451
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.55 E-value=8.8e-08 Score=77.08 Aligned_cols=55 Identities=27% Similarity=0.423 Sum_probs=40.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
+..++++|+||+|||||+|+|.|.... +++.|++|+... .+.. ...+.++|+||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~------------------~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL------------------MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc------------------CCCEEEEECcCC
Confidence 467899999999999999999997664 377888876432 2222 124778999985
No 452
>PRK04213 GTP-binding protein; Provisional
Probab=98.55 E-value=2.5e-07 Score=77.15 Aligned_cols=55 Identities=33% Similarity=0.384 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
.-.++|+|++|||||||+|.|+|.....+..|++|+.+.. +.+ ..+.++|++|++
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~-------------------~~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW-------------------GDFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee-------------------cceEEEeCCccc
Confidence 3589999999999999999999987555667777765432 211 147899999974
No 453
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.55 E-value=2.4e-07 Score=72.53 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=60.2
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccccc
Q 024748 29 IVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (263)
Q Consensus 29 ivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 107 (263)
|+|+.|||||||+|.|++.... .+..+.+|..+........+ ...+.++|++|+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999998765 45666666666555444331 136899999998775543332
Q ss_pred hHHHHHHHHhhhcceeEEeecc
Q 024748 108 LGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 108 ~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
........++.+|.++.++++.
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~ 86 (163)
T cd00880 65 REELARRVLERADLILFVVDAD 86 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCC
Confidence 2344555678899999998874
No 454
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.54 E-value=1.8e-08 Score=84.83 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=35.8
Q ss_pred CCCchhHHHHHHHhhhccHHHHH-HHHHHHHHHhhh-cc-----chhHHHHHHHHHHH
Q 024748 141 VDPVRDLEVISAELRLKDIEFME-RRIEDVEKSMKR-SN-----DKQLKIEHELCQRV 191 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~-k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i 191 (263)
.+| ++.++|||+...|+...+ ...+.+.+.... +. +|+.+.+ ..||++
T Consensus 138 ~~p--~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i 192 (204)
T cd03240 138 SNC--GILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADHI 192 (204)
T ss_pred cCC--CEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEE
Confidence 456 899999999999999888 777777766543 32 3887755 568877
No 455
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.4e-08 Score=90.23 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=37.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP 69 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~ 69 (263)
---.+.+.|....+|+||||||+|||||+++|+|- +.|+.|..+-+
T Consensus 602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk-----------l~P~~GE~RKn 647 (807)
T KOG0066|consen 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK-----------LDPNDGELRKN 647 (807)
T ss_pred hhhcccccccccceeEEECCCCccHHHHHHHHhcC-----------CCCCcchhhcc
Confidence 33445566677789999999999999999999999 58999876544
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.52 E-value=2.7e-07 Score=74.75 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
..+++|+|+||||||||++.|+|... .+..|+.| .+.+.+ ..+.++|++|..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~-------~~~~~t~g~~~~~i~~~~-----------------~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI-------SHITPTQGFNIKTVQSDG-----------------FKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC-------cccCCCCCcceEEEEECC-----------------EEEEEEECCCCH
Confidence 46899999999999999999999742 11345555 444433 246778887742
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ........++.+|.++.++|+
T Consensus 70 ~-------~~~~~~~~~~~~~~ii~v~D~ 91 (173)
T cd04155 70 A-------IRPYWRNYFENTDCLIYVIDS 91 (173)
T ss_pred H-------HHHHHHHHhcCCCEEEEEEeC
Confidence 1 112223345678888888876
No 457
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.51 E-value=3.1e-07 Score=74.08 Aligned_cols=74 Identities=24% Similarity=0.280 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+|+++|++|+|||||+|.|+|... .....+.+.+.+ ..++|+||......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------~~~~~~~v~~~~-------------------~~~iDtpG~~~~~~-- 52 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------LARKTQAVEFND-------------------KGDIDTPGEYFSHP-- 52 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------cCccceEEEECC-------------------CCcccCCccccCCH--
Confidence 699999999999999999998742 112334444432 12589999754321
Q ss_pred cchHHHHHHHHhhhcceeEEeeccC
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.+...+...++.+|.++.++++..
T Consensus 53 -~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 53 -RWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred -HHHHHHHHHHhcCCEEEEEEeCCC
Confidence 223444556789999999999853
No 458
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.51 E-value=2.7e-08 Score=86.29 Aligned_cols=44 Identities=2% Similarity=-0.007 Sum_probs=32.7
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHH
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRV 191 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i 191 (263)
+++++|||+...|+...+...+.+.+.. .+. +|. ..+.+.||++
T Consensus 190 ~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~-~~~~~~~d~v 238 (251)
T cd03273 190 PMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK-EGMFNNANVL 238 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC-HHHHHhCCEE
Confidence 7999999999999998888888777664 333 277 4555567765
No 459
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.50 E-value=1.6e-08 Score=84.95 Aligned_cols=32 Identities=25% Similarity=0.132 Sum_probs=27.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+....+..|++++|+|+||||||||+++|++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 34455678899999999999999999999954
No 460
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.49 E-value=1.4e-07 Score=77.37 Aligned_cols=55 Identities=33% Similarity=0.544 Sum_probs=43.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
...++++|.||+|||||+|.|+|... .+++.|++|+.... +.+. .++.++|+||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~------------------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLD------------------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeC------------------CCEEEEECcCC
Confidence 36899999999999999999999876 44889999876443 2222 25788999985
No 461
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.47 E-value=3.9e-07 Score=73.27 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=51.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC----CCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE----NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~----~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
.++|+|++|||||||++.|++...... ....+|+..+.+.+.+++ ..+.++|++|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~- 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQES- 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCChh-
Confidence 378999999999999999998643221 122334444444555433 3578899988542
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+.......++.+|.++.++|+
T Consensus 63 ------~~~~~~~~~~~~~~~v~vvd~ 83 (167)
T cd04160 63 ------LRSLWDKYYAECHAIIYVIDS 83 (167)
T ss_pred ------hHHHHHHHhCCCCEEEEEEEC
Confidence 112223446788988888876
No 462
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.46 E-value=1.4e-07 Score=78.29 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=43.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC---------CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehh
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI---------PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~---------~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~ 93 (263)
.+..++++|.+|+|||||+|.|.+... .++..|+||+.+....+. ..+.++
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~ 185 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLY 185 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEE
Confidence 456899999999999999999998542 447888888887644321 147899
Q ss_pred hhhcc
Q 024748 94 DIAGL 98 (263)
Q Consensus 94 d~~g~ 98 (263)
||||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99986
No 463
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.45 E-value=3.1e-07 Score=81.54 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+|.|+|.+|+||||++|.|+|..... +.+..+|..+......+.| ..+.++||||+....+
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIEGGY 101 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCchHH
Confidence 489999999999999999999998754 6666666666544444444 2589999999986532
Q ss_pred cccchHHHHHHHHh------hhcceeEEee
Q 024748 104 EGQGLGNSFLSHIR------AVDGIFHVLR 127 (263)
Q Consensus 104 ~~~~~~~~~~~~~~------~~d~~l~vv~ 127 (263)
. .....+.++ ..|+++++.+
T Consensus 102 ~----~e~~~~~ik~~l~~~g~DvVLyV~r 127 (313)
T TIGR00991 102 I----NDQAVNIIKRFLLGKTIDVLLYVDR 127 (313)
T ss_pred H----HHHHHHHHHHHhhcCCCCEEEEEec
Confidence 1 222233333 4677777743
No 464
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.43 E-value=7.8e-07 Score=70.10 Aligned_cols=76 Identities=30% Similarity=0.448 Sum_probs=45.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccccc
Q 024748 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (263)
Q Consensus 27 vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 106 (263)
++|+|++|||||||+|.|+|........| |...+...+...+ ..+.++|++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~------ 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN-----------------VTLKVWDLGGQPR------ 56 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC-----------------EEEEEEECCCCHh------
Confidence 78999999999999999999853222111 1111111121111 2577888887432
Q ss_pred chHHHHHHHHhhhcceeEEeec
Q 024748 107 GLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 107 ~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 57 -~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 57 -FRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred -HHHHHHHHHhcCCEEEEEEEC
Confidence 112223345778888888876
No 465
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.43 E-value=3.5e-07 Score=75.08 Aligned_cols=87 Identities=23% Similarity=0.261 Sum_probs=52.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~-~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
...-.++|+|++|+|||||+|.|++.. . .+++.+++|..+....+ + ..+.++|++|+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 344689999999999999999999874 2 23555666554332111 1 258899999986
Q ss_pred cCccccc------chHHHHHHHHhhhcceeEEeec
Q 024748 100 RGAHEGQ------GLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 100 ~~~~~~~------~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
....... .+...++.....++.++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~ 110 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDI 110 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecC
Confidence 5432111 1111222222345677888775
No 466
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.43 E-value=2.6e-07 Score=77.91 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=51.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCC---------CCccccCCccceeeeCCcchHHH--------hhhcCCCCCCCc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN---------FPFCTIEPNEARVNIPDERFEWL--------CQLFKPKSAVPA 88 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~---------~~~~t~~p~~G~i~~~g~~~~~l--------~~~~~~~~~~~~ 88 (263)
+++|+|++|||||||++.|++....+.. .+.++.....+...++..+..+- ...+... ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP---KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC---Cc
Confidence 4899999999999999999876543320 01111111111111111110000 0001111 13
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.+.++|+||... +.......++.+|.++.|+++.
T Consensus 78 ~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~ 111 (208)
T cd04166 78 KFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDAR 111 (208)
T ss_pred eEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECC
Confidence 578999999632 2233445678899999999874
No 467
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.43 E-value=8.8e-08 Score=87.88 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=43.8
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|++++|||..-+|+..+-+....++++...+++ |++.-+.-+.|-+ .++. |.+-.+|-+
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~v-hI~Y-G~pg~YGvv 296 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFV-HILY-GEPGVYGVV 296 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhee-EEEe-cCCccceEe
Confidence 899999999999999887777777877754333 9999888888877 6665 554444433
No 468
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=3e-07 Score=73.81 Aligned_cols=57 Identities=28% Similarity=0.525 Sum_probs=44.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
..+..++++|.+|+|||||+|.|++... .+++.|++|+.+.... +. ..+.++|+||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD------------------NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec------------------CCEEEEECCCC
Confidence 4567899999999999999999999764 4577888888775432 21 25789999985
No 469
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.42 E-value=8.3e-07 Score=73.16 Aligned_cols=79 Identities=25% Similarity=0.362 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.-+++|+|++|||||||++.+++.... ....|..+..+.+.+.+ ..+.++|++|...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~-----------------~~~~l~D~~G~~~--- 75 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGN-----------------IKFKTFDLGGHEQ--- 75 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECC-----------------EEEEEEECCCCHH---
Confidence 357799999999999999999986431 12235566667776654 2467888887321
Q ss_pred cccchHHHHHHHHhhhcceeEEeecc
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
........++.+|.++.+++..
T Consensus 76 ----~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 76 ----ARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred ----HHHHHHHHhccCCEEEEEEECC
Confidence 1111233457788888888763
No 470
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.41 E-value=1.7e-07 Score=87.23 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=41.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc-eeeeCCcch
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERF 73 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G-~i~~~g~~~ 73 (263)
.+...++.++.+|++++|+|++|||||||++ .|.. .|..| .|.++|..+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-----------~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-----------KFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-----------CCCCCCEEEECCEEC
Confidence 4566788899999999999999999999999 5553 56677 799988765
No 471
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.41 E-value=6.4e-07 Score=75.86 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=52.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE--NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~--~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
++.|+|++||||||+.|.|+|.....+ ....+|.........+.|. .++++|||||.....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR-----------------QVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE-----------------EEEEEE--SSEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce-----------------EEEEEeCCCCCCCcc
Confidence 578999999999999999999987443 2334455666666666663 589999999976544
Q ss_pred cccchHHHHHHHH----hhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHI----RAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~----~~~d~~l~vv~~ 128 (263)
........+...+ ...++++.|+..
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~ 93 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPL 93 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEET
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEec
Confidence 3222223333222 235677777665
No 472
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.40 E-value=5.1e-07 Score=78.05 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+...+-|+|..|||||+|+|+|.+-... ++..+.+|..+..-..++++ ..|++.|+||++.+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcccc
Confidence 3345669999999999999999954432 24344444333332333332 36999999999987
Q ss_pred cccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
..+.......+++.+...|+++.++++.+
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~d 129 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADD 129 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCC
Confidence 77665666778888899998888887743
No 473
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.40 E-value=8e-07 Score=71.91 Aligned_cols=82 Identities=24% Similarity=0.216 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.+++........+..+.+.....+.+.+.. ..+.++|++|...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~---- 65 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQ---------------IKLQIWDTAGQES---- 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHH----
Confidence 479999999999999999999875322211221222222233333321 2578899988321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+.......++.+|+++.++|+
T Consensus 66 ---~~~~~~~~~~~~d~il~v~d~ 86 (168)
T cd01866 66 ---FRSITRSYYRGAAGALLVYDI 86 (168)
T ss_pred ---HHHHHHHHhccCCEEEEEEEC
Confidence 122223445778998888876
No 474
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.39 E-value=9.1e-07 Score=71.03 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-+++++|++|||||||++.+++........|..+.......+.+++.. ..+.++|++|....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~--- 65 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKT---------------IKAQIWDTAGQERY--- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHH---
Confidence 378999999999999999999876443333444333333344444421 25788999885321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.++.++.+.+.
T Consensus 66 ----~~~~~~~~~~~~~~i~v~d~ 85 (165)
T cd01868 66 ----RAITSAYYRGAVGALLVYDI 85 (165)
T ss_pred ----HHHHHHHHCCCCEEEEEEEC
Confidence 11112334667777777765
No 475
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.37 E-value=3.9e-07 Score=75.53 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=37.2
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g 70 (263)
+...+..|..++|+|+||||||||+++|+|. ++++.|.+.+.+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~-----------i~~~~~~i~ied 60 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAF-----------IPPDERIITIED 60 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEECC
Confidence 3456788999999999999999999999999 478888888865
No 476
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.37 E-value=3.3e-07 Score=71.71 Aligned_cols=58 Identities=36% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
+++++|.+|||||||++.|++........+++|.......+.+++.. ..+.++|++|.
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~ 60 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQ 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCc
Confidence 78999999999999999999987444555666665555445554321 25788999983
No 477
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.36 E-value=1.1e-06 Score=69.02 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|||||||++.+.+........+..+.......+.+++. ...+.++|++|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~----- 61 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQER----- 61 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChHH-----
Confidence 6899999999999999999988644332222222222222222221 12577889888532
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 62 --~~~~~~~~~~~~d~ii~v~d~ 82 (159)
T cd00154 62 --FRSITPSYYRGAHGAILVYDI 82 (159)
T ss_pred --HHHHHHHHhcCCCEEEEEEEC
Confidence 112233445678988888876
No 478
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.36 E-value=4.4e-07 Score=72.25 Aligned_cols=55 Identities=33% Similarity=0.334 Sum_probs=35.4
Q ss_pred EEEEcCCCCcHHHHHHHHH--cCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 27 IGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 27 vgivG~nGaGKSTLl~~L~--G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
|+++|++|||||||+|.|+ +.....++.+++|..... +.+ ...+.++|++|+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV------------------NDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc------------------cCeEEEecCCCcccc
Confidence 7999999999999999999 443223444433332211 111 126889999997654
No 479
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.36 E-value=1.4e-06 Score=72.92 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=52.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc-
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE- 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~- 104 (263)
+|+|+|.+|+|||||++.+++........|.++.....-.+.++|+. ..+.++|++|.......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~~~ 66 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQRYPGTA 66 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCcccCCccc
Confidence 68999999999999999998764322222222211111233444422 25789999997543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
+..........++.+|+++.+++..
T Consensus 67 ~~e~~~~~~~~~~~ad~iilv~D~~ 91 (198)
T cd04142 67 GQEWMDPRFRGLRNSRAFILVYDIC 91 (198)
T ss_pred hhHHHHHHHhhhccCCEEEEEEECC
Confidence 1111112334567899999998874
No 480
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.34 E-value=1.4e-06 Score=69.83 Aligned_cols=83 Identities=18% Similarity=0.050 Sum_probs=51.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
.++|+|++|||||||++.|++........+++|.......+.... .....+.++|++|....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~iiDtpG~~~~---- 63 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV--------------LKIPGITFIDTPGHEAF---- 63 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc--------------CCcceEEEEeCCCcHHH----
Confidence 589999999999999999998754333334444433322332210 00135889999985321
Q ss_pred cchHHHHHHHHhhhcceeEEeecc
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.......+..+|.++.++++.
T Consensus 64 ---~~~~~~~~~~~d~il~v~d~~ 84 (168)
T cd01887 64 ---TNMRARGASLTDIAILVVAAD 84 (168)
T ss_pred ---HHHHHHHHhhcCEEEEEEECC
Confidence 111123456789999998874
No 481
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.33 E-value=1.5e-06 Score=69.45 Aligned_cols=81 Identities=25% Similarity=0.262 Sum_probs=48.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|||||||++.+++........+..+.....-.+.+++.. ..+.++|++|....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~---- 62 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR---------------VKLQIWDTAGQERF---- 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChHHH----
Confidence 68999999999999999999875432222222222222223333321 25778898884221
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.+++.
T Consensus 63 ---~~~~~~~~~~~d~~ilv~d~ 82 (164)
T smart00175 63 ---RSITSSYYRGAVGALLVYDI 82 (164)
T ss_pred ---HHHHHHHhCCCCEEEEEEEC
Confidence 11122334678888888875
No 482
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.33 E-value=5.7e-07 Score=81.85 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=86.1
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-hhhcCCCCCCC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-CQLFKPKSAVP 87 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-~~~~~~~~~~~ 87 (263)
.+....+.+...+++|++++|+|.+||||||+|++++|.... ++.....|++|.|.++...+..+ ...+.|. .
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~---~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~---f 467 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG---RGEEKYRPDSGKVEVPKNTVSALIPGEYEPE---F 467 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhc---ccccccCCCCCceeccccchhhccCcccccc---c
Confidence 356778899999999999999999999999999999998532 23334579999998875432211 1111111 1
Q ss_pred cceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCc-----eeeec--ccCCCchhHHHHHHHhhhccHH
Q 024748 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----IIHVD--DSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~~l~--~~~~P~~~i~ilde~~~~~d~~ 160 (263)
...++++..+-..+ .....-.+++.....|+.+... .|.+.. -..+. .+.-| .+.++||-.+..|..
T Consensus 468 ~~~tilehl~s~tG---D~~~AveILnraGlsDAvlyRr-~f~ELStGQKeR~KLAkllaerp--n~~~iDEF~AhLD~~ 541 (593)
T COG2401 468 GEVTILEHLRSKTG---DLNAAVEILNRAGLSDAVLYRR-KFSELSTGQKERAKLAKLLAERP--NVLLIDEFAAHLDEL 541 (593)
T ss_pred CchhHHHHHhhccC---chhHHHHHHHhhccchhhhhhc-cHhhcCcchHHHHHHHHHHhcCC--CcEEhhhhhhhcCHH
Confidence 13344443321111 1111223334344444443322 221110 00011 12345 677888877888877
Q ss_pred HHHHHHHHHHHHh
Q 024748 161 FMERRIEDVEKSM 173 (263)
Q Consensus 161 ~~~k~~~~~~~~~ 173 (263)
...+....+.++.
T Consensus 542 TA~rVArkisela 554 (593)
T COG2401 542 TAVRVARKISELA 554 (593)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555554
No 483
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.32 E-value=1e-06 Score=78.01 Aligned_cols=62 Identities=32% Similarity=0.429 Sum_probs=48.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
..+..++++|.||+|||||+|.|+|... .+++.|++|+... .+.+. ..+.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC------------------CcEEEEECCCcCC
Confidence 3456899999999999999999999876 4588999988764 34432 2578999999976
Q ss_pred Ccc
Q 024748 101 GAH 103 (263)
Q Consensus 101 ~~~ 103 (263)
...
T Consensus 179 ~~~ 181 (287)
T PRK09563 179 PKL 181 (287)
T ss_pred CCC
Confidence 543
No 484
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.31 E-value=2.5e-06 Score=70.35 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=54.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+++++|++|||||||++.+++..... ..+|..+..+.+.+.+ ..+.++|++|....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~ 74 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAIGN-----------------IKFTTFDLGGHQQA 74 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEECC-----------------EEEEEEECCCCHHH
Confidence 455789999999999999999999864221 1234555555555433 25788999986421
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++|+
T Consensus 75 -------~~~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 75 -------RRLWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred -------HHHHHHHhCCCCEEEEEEEC
Confidence 11122345788999999887
No 485
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.29 E-value=9.4e-07 Score=85.68 Aligned_cols=82 Identities=33% Similarity=0.453 Sum_probs=61.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc--cch
Q 024748 31 GLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG--QGL 108 (263)
Q Consensus 31 G~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~ 108 (263)
|.+|||||||+|.++|....++++|++|++...|.+.++|. .+.++|+||........ +..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~-----------------~i~lvDtPG~~~~~~~s~~e~v 63 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE-----------------DIEIVDLPGIYSLTTFSLEEEV 63 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe-----------------EEEEEECCCccccCccchHHHH
Confidence 89999999999999999877799999999999998887652 47899999987543221 111
Q ss_pred HHHHHHHHhhhcceeEEeeccC
Q 024748 109 GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 109 ~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.+.+. ..+.+|.++.++|+.+
T Consensus 64 ~~~~l-~~~~aDvvI~VvDat~ 84 (591)
T TIGR00437 64 ARDYL-LNEKPDLVVNVVDASN 84 (591)
T ss_pred HHHHH-hhcCCCEEEEEecCCc
Confidence 12221 1246899999999864
No 486
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.29 E-value=2e-06 Score=69.24 Aligned_cols=81 Identities=23% Similarity=0.219 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|||||||++.+.+........+..+.......+.+++. ...+.++|++|....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~---- 62 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDK---------------LVTLQIWDTAGQERF---- 62 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHHH----
Confidence 6899999999999999999876422111000011111112233321 125778899874321
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++++
T Consensus 63 ---~~~~~~~~~~~d~~i~v~d~ 82 (172)
T cd01862 63 ---QSLGVAFYRGADCCVLVYDV 82 (172)
T ss_pred ---HhHHHHHhcCCCEEEEEEEC
Confidence 11122345778888888876
No 487
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.28 E-value=2.1e-06 Score=70.13 Aligned_cols=91 Identities=18% Similarity=0.098 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhh-----hcCCCCCCCcceehhhhhcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~-----~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
.|+|+|.+|||||||+|.|++........+..+ .............. .+.........+.++|++|...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE------ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee------cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence 379999999999999999998854321100000 00000000000000 0000000123588999999642
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
........++.+|.++.++++.
T Consensus 75 -------~~~~~~~~~~~~d~~i~v~d~~ 96 (189)
T cd00881 75 -------FSSEVIRGLSVSDGAILVVDAN 96 (189)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECC
Confidence 2233445567899999999874
No 488
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.28 E-value=2.4e-06 Score=68.69 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.++.++|++|||||||++.+++........|..+.......+.+.+.. ..+.++|++|....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~--- 64 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERF--- 64 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHhH---
Confidence 478999999999999999999764322211211111112223333321 25788899884321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|+++.++|+
T Consensus 65 ----~~~~~~~~~~~~~ii~v~d~ 84 (166)
T cd01869 65 ----RTITSSYYRGAHGIIIVYDV 84 (166)
T ss_pred ----HHHHHHHhCcCCEEEEEEEC
Confidence 11122345678998888876
No 489
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.28 E-value=2e-06 Score=69.20 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-+++++|++|||||||++.+++........+..+.......+.+.+.. ..+.++|++|...
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~---- 68 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEK---------------IKLQIWDTAGQER---- 68 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHH----
Confidence 579999999999999999998543211111111111222233443322 2467788877422
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.+++.
T Consensus 69 ---~~~~~~~~~~~~d~~i~v~d~ 89 (169)
T cd04114 69 ---FRSITQSYYRSANALILTYDI 89 (169)
T ss_pred ---HHHHHHHHhcCCCEEEEEEEC
Confidence 111223445778888888775
No 490
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.27 E-value=1.3e-06 Score=69.05 Aligned_cols=55 Identities=35% Similarity=0.454 Sum_probs=41.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
+++++|.+|+|||||+|.|+|... .+++.+++|++.. .+.++ ..+.++||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~------------------~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLT------------------PTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeC------------------CCEEEEECCCcCC
Confidence 899999999999999999998875 3366666665533 23322 2578999999853
No 491
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.27 E-value=2.4e-06 Score=72.98 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=59.4
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCc
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPA 88 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~ 88 (263)
.+..+..+. +...++.+++|+|++|+|||||+|.|.+... .++.....|.+.+. .+ ...
T Consensus 25 ~~~~~~~r~-~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~------~~~~~~~~g~i~i~-----------~~---~~~ 83 (225)
T cd01882 25 LHVPVVDRT-PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYT------KQNISDIKGPITVV-----------TG---KKR 83 (225)
T ss_pred ccceeeccc-cccCCCCEEEEECCCCCCHHHHHHHHHhhcc------cCccccccccEEEE-----------ec---CCc
Confidence 344444444 5578899999999999999999999988632 12223334433221 00 013
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.+.++|+++.. ....+.++.+|.++.++|+.
T Consensus 84 ~i~~vDtPg~~----------~~~l~~ak~aDvVllviDa~ 114 (225)
T cd01882 84 RLTFIECPNDI----------NAMIDIAKVADLVLLLIDAS 114 (225)
T ss_pred eEEEEeCCchH----------HHHHHHHHhcCEEEEEEecC
Confidence 57889998632 34456678899999999974
No 492
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.26 E-value=1.4e-06 Score=76.70 Aligned_cols=60 Identities=33% Similarity=0.451 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....++++|.||+|||||+|.|+|... .+++.|++|+.+. .+.+. ..+.++|+||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC------------------CCEEEEECCCcccC
Confidence 456899999999999999999998874 4478899987753 34432 25789999999765
Q ss_pred c
Q 024748 102 A 102 (263)
Q Consensus 102 ~ 102 (263)
.
T Consensus 177 ~ 177 (276)
T TIGR03596 177 K 177 (276)
T ss_pred C
Confidence 4
No 493
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.25 E-value=1.2e-06 Score=81.72 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=32.5
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
-|....+|++|+.+-|.||||||||+||++|.|++
T Consensus 498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW 532 (728)
T KOG0064|consen 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW 532 (728)
T ss_pred ecceeEEecCCceEEEECCCCccHHHHHHHHhccC
Confidence 45678899999999999999999999999999996
No 494
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.25 E-value=1.4e-06 Score=73.43 Aligned_cols=38 Identities=24% Similarity=0.078 Sum_probs=33.2
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+....+.+...+..|+.++|.||||+||||+++++++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34566778888889999999999999999999999876
No 495
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.24 E-value=7.6e-07 Score=90.02 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+++++|||+.+.|+......++.+.++...+.+ |+...+ ..||++ ..| ..|++++.|+.
T Consensus 853 ~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i-~~aD~i-i~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 853 TLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVI-KTADWI-IDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEE-EEecCCcCCCCCEEEEeCCH
Confidence 799999999999999999998888887655544 999887 479999 788 57888887754
No 496
>PLN03108 Rab family protein; Provisional
Probab=98.24 E-value=2.7e-06 Score=71.81 Aligned_cols=82 Identities=24% Similarity=0.186 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.++.|+|++|||||||++.+++........|..+.....+.+.+++.. ..+.++|++|....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~~--- 68 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESF--- 68 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH---
Confidence 479999999999999999999774322222211112223345555432 24678888774321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.+++.
T Consensus 69 ----~~~~~~~~~~ad~~vlv~D~ 88 (210)
T PLN03108 69 ----RSITRSYYRGAAGALLVYDI 88 (210)
T ss_pred ----HHHHHHHhccCCEEEEEEEC
Confidence 11122344667888887775
No 497
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.24 E-value=3.3e-06 Score=67.45 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=47.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|||||||++.+++........|..+.....-.+.+.+. ...+.++|++|.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~--- 63 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK---------------EVRVNFFDLSGHPEYL--- 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe---------------EEEEEEEECCccHHHH---
Confidence 6899999999999999999987532111111111111112333332 1367889998853211
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......+.+|.++.++|.
T Consensus 64 ----~~~~~~~~~~d~~ilv~D~ 82 (168)
T cd04119 64 ----EVRNEFYKDTQGVLLVYDV 82 (168)
T ss_pred ----HHHHHHhccCCEEEEEEEC
Confidence 1112234678888888775
No 498
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.24 E-value=3.5e-07 Score=96.78 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=50.6
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhh------cCCccccCCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ------DGKDVRLGDW 206 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~------~G~~~~~g~~ 206 (263)
.+| +++++|||+.+.|+...++.++.+.++...+.+ |+++.+ ++||++ ..|. .|+++..|+.
T Consensus 829 ~~P--~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV-i~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 829 KKP--TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV-LELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE-EEEccCCCCCCCEEEEeCCH
Confidence 367 899999999999999999999888887655544 999988 899999 8884 5677666653
No 499
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.22 E-value=2.1e-06 Score=71.24 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC------CC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLA------IP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~------~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
.++|+|+.|+|||||++.+++.. .. .+..+++|+......+.+........ ...+. .-...++++|++|.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~DtpG~ 78 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRE--LINPG-EENLQITLVDCPGH 78 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccc--ccccc-ccCceEEEEECCCc
Confidence 58999999999999999999741 10 11233455555444444321000000 00000 11236889999996
Q ss_pred ccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. .+...+......+|.++.|+++..
T Consensus 79 ~-------~~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 79 A-------SLIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred H-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 3 233455566677899999998743
No 500
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.21 E-value=3.4e-06 Score=68.08 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-+++++|++|+|||||++.+++........|..+.+.....+.+++.. ..+.++|++|....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~g~~~~--- 65 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKK---------------IKLQIWDTAGQERF--- 65 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEE---------------EEEEEEeCCchHHH---
Confidence 478999999999999999999764322111111111111123333321 25788899884321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|+++.+.++
T Consensus 66 ----~~~~~~~~~~ad~~i~v~d~ 85 (167)
T cd01867 66 ----RTITTAYYRGAMGIILVYDI 85 (167)
T ss_pred ----HHHHHHHhCCCCEEEEEEEC
Confidence 11122345788988888875
Done!