Query 024748
Match_columns 263
No_of_seqs 325 out of 2734
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 2.8E-38 9.5E-43 288.4 23.1 249 1-253 1-255 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 6.1E-35 2.1E-39 265.9 14.8 251 1-253 1-253 (396)
3 1jal_A YCHF protein; nucleotid 100.0 2.1E-31 7.1E-36 240.4 19.1 228 23-253 1-228 (363)
4 2dby_A GTP-binding protein; GD 100.0 5.3E-29 1.8E-33 225.7 20.4 227 25-253 2-233 (368)
5 4g1u_C Hemin import ATP-bindin 99.8 5.4E-22 1.9E-26 172.4 1.0 177 11-206 24-232 (266)
6 3fvq_A Fe(3+) IONS import ATP- 99.8 5.1E-22 1.8E-26 178.9 -0.2 176 11-206 17-223 (359)
7 3tui_C Methionine import ATP-b 99.8 5.2E-22 1.8E-26 179.1 -1.4 177 11-206 41-248 (366)
8 1wxq_A GTP-binding protein; st 99.8 6.1E-20 2.1E-24 168.0 12.2 215 26-250 2-238 (397)
9 3gfo_A Cobalt import ATP-bindi 99.8 2.4E-22 8.3E-27 175.4 -4.3 177 12-207 22-229 (275)
10 3rlf_A Maltose/maltodextrin im 99.8 7.8E-22 2.7E-26 178.9 -1.7 176 11-206 16-218 (381)
11 2olj_A Amino acid ABC transpor 99.8 2.8E-21 9.6E-26 167.6 0.9 177 11-206 37-243 (263)
12 2yyz_A Sugar ABC transporter, 99.8 5.1E-21 1.7E-25 172.7 1.2 177 11-206 16-218 (359)
13 4a9a_A Ribosome-interacting GT 99.8 3.8E-21 1.3E-25 174.3 0.1 108 22-158 69-177 (376)
14 2onk_A Molybdate/tungstate ABC 99.8 8E-21 2.7E-25 162.7 2.0 173 14-206 15-211 (240)
15 1b0u_A Histidine permease; ABC 99.8 3.5E-21 1.2E-25 167.0 -0.5 177 11-206 19-237 (262)
16 1ji0_A ABC transporter; ATP bi 99.8 6.7E-21 2.3E-25 163.2 1.0 177 11-205 19-222 (240)
17 3tif_A Uncharacterized ABC tra 99.8 5.4E-21 1.8E-25 163.3 0.2 178 11-207 18-230 (235)
18 2it1_A 362AA long hypothetical 99.8 6.5E-21 2.2E-25 172.1 0.7 177 11-206 16-218 (362)
19 1z47_A CYSA, putative ABC-tran 99.8 5.1E-21 1.7E-25 172.3 -0.0 177 11-206 28-230 (355)
20 1g6h_A High-affinity branched- 99.8 2.1E-21 7.1E-26 168.0 -2.6 178 11-207 20-238 (257)
21 3d31_A Sulfate/molybdate ABC t 99.8 5.4E-21 1.9E-25 171.9 -0.2 174 13-206 15-212 (348)
22 1v43_A Sugar-binding transport 99.8 8.8E-21 3E-25 171.9 0.8 177 11-206 24-226 (372)
23 2pcj_A ABC transporter, lipopr 99.8 3.6E-21 1.2E-25 163.2 -2.1 174 11-204 17-221 (224)
24 1vpl_A ABC transporter, ATP-bi 99.8 3.8E-21 1.3E-25 166.2 -2.7 176 11-205 28-229 (256)
25 1oxx_K GLCV, glucose, ABC tran 99.8 4.9E-21 1.7E-25 172.6 -2.4 175 13-206 20-225 (353)
26 1g29_1 MALK, maltose transport 99.8 7.5E-21 2.6E-25 172.4 -2.0 176 12-206 17-224 (372)
27 2qi9_C Vitamin B12 import ATP- 99.8 2.6E-20 8.8E-25 160.3 1.3 171 12-205 14-216 (249)
28 2yz2_A Putative ABC transporte 99.8 8.9E-21 3E-25 164.8 -3.1 178 11-205 20-221 (266)
29 2ixe_A Antigen peptide transpo 99.7 8.8E-20 3E-24 158.9 -1.0 179 11-206 32-240 (271)
30 3nh6_A ATP-binding cassette SU 99.7 6.7E-20 2.3E-24 162.1 -4.2 176 11-207 67-273 (306)
31 1mv5_A LMRA, multidrug resista 99.7 9.4E-20 3.2E-24 156.3 -3.6 176 11-206 15-221 (243)
32 2nq2_C Hypothetical ABC transp 99.7 3E-19 1E-23 154.0 -0.5 169 11-205 18-211 (253)
33 2ihy_A ABC transporter, ATP-bi 99.7 9.1E-20 3.1E-24 159.4 -4.9 176 11-205 34-246 (279)
34 2ff7_A Alpha-hemolysin translo 99.7 1.7E-19 5.8E-24 155.0 -3.4 174 11-205 22-226 (247)
35 1sgw_A Putative ABC transporte 99.7 1.6E-19 5.3E-24 152.1 -3.8 160 12-191 23-203 (214)
36 2d2e_A SUFC protein; ABC-ATPas 99.7 9.1E-20 3.1E-24 157.0 -5.7 180 11-206 16-228 (250)
37 2pjz_A Hypothetical protein ST 99.7 1.9E-19 6.5E-24 156.1 -5.7 173 11-206 18-210 (263)
38 2zu0_C Probable ATP-dependent 99.7 6.6E-19 2.3E-23 153.0 -3.1 181 11-207 33-250 (267)
39 3b5x_A Lipid A export ATP-bind 99.7 8.1E-18 2.8E-22 161.1 3.2 177 11-206 356-562 (582)
40 2ghi_A Transport protein; mult 99.7 2.2E-18 7.7E-23 149.1 -3.7 174 11-206 33-237 (260)
41 2cbz_A Multidrug resistance-as 99.6 1.3E-18 4.3E-23 148.7 -5.9 168 11-206 18-212 (237)
42 2pze_A Cystic fibrosis transme 99.6 3.3E-18 1.1E-22 145.4 -3.6 169 10-206 20-213 (229)
43 3gd7_A Fusion complex of cysti 99.6 4.6E-18 1.6E-22 154.9 -3.0 175 10-207 33-238 (390)
44 3qf4_B Uncharacterized ABC tra 99.6 8.5E-18 2.9E-22 161.4 -1.4 177 10-207 367-574 (598)
45 2yl4_A ATP-binding cassette SU 99.6 1.1E-17 3.6E-22 160.6 -2.3 178 12-207 358-566 (595)
46 3qf4_A ABC transporter, ATP-bi 99.6 1.1E-17 3.8E-22 160.2 -2.2 177 10-207 355-562 (587)
47 3b60_A Lipid A export ATP-bind 99.6 9.8E-18 3.3E-22 160.5 -3.6 176 11-206 356-562 (582)
48 4a82_A Cystic fibrosis transme 99.6 6.8E-18 2.3E-22 161.5 -5.3 177 10-207 353-560 (578)
49 3iev_A GTP-binding protein ERA 99.6 2.8E-16 9.7E-21 139.0 3.5 194 25-238 11-230 (308)
50 1tq4_A IIGP1, interferon-induc 99.6 1.6E-16 5.4E-21 145.7 1.6 173 11-203 36-259 (413)
51 2bbs_A Cystic fibrosis transme 99.6 4.4E-17 1.5E-21 143.1 -3.9 167 11-206 51-242 (290)
52 1wf3_A GTP-binding protein; GT 99.5 1.7E-15 5.7E-20 133.7 2.3 192 26-238 9-222 (301)
53 1ega_A Protein (GTP-binding pr 99.5 3.8E-16 1.3E-20 137.8 -2.2 193 25-238 9-223 (301)
54 3ozx_A RNAse L inhibitor; ATP 99.5 7.4E-16 2.5E-20 146.0 -0.5 156 19-199 289-463 (538)
55 3g5u_A MCG1178, multidrug resi 99.5 3.7E-16 1.3E-20 161.3 -4.5 178 11-207 1046-1254(1284)
56 3g5u_A MCG1178, multidrug resi 99.5 1.1E-15 3.8E-20 157.7 -1.3 177 10-207 402-609 (1284)
57 1udx_A The GTP-binding protein 99.5 6.4E-15 2.2E-19 135.3 3.2 104 10-129 143-246 (416)
58 4f4c_A Multidrug resistance pr 99.5 4.6E-16 1.6E-20 160.9 -5.3 180 9-207 1090-1300(1321)
59 3bk7_A ABC transporter ATP-bin 99.5 1.8E-15 6.1E-20 145.2 -1.9 161 19-207 377-559 (607)
60 1yqt_A RNAse L inhibitor; ATP- 99.5 1.7E-15 5.9E-20 143.5 -2.4 161 20-207 308-489 (538)
61 4f4c_A Multidrug resistance pr 99.4 4.3E-15 1.5E-19 153.7 -3.0 178 9-207 429-637 (1321)
62 1yqt_A RNAse L inhibitor; ATP- 99.4 1E-14 3.4E-19 138.3 -1.0 160 13-199 37-235 (538)
63 3ozx_A RNAse L inhibitor; ATP 99.4 1.4E-14 5E-19 137.1 -0.0 59 140-202 154-217 (538)
64 3j16_B RLI1P; ribosome recycli 99.4 1.7E-14 5.7E-19 138.3 0.4 60 140-202 237-301 (608)
65 3j16_B RLI1P; ribosome recycli 99.4 3.2E-14 1.1E-18 136.4 1.2 166 15-207 364-555 (608)
66 3bk7_A ABC transporter ATP-bin 99.4 2.6E-14 8.8E-19 137.1 0.2 160 13-199 107-305 (607)
67 3ux8_A Excinuclease ABC, A sub 99.3 3.9E-14 1.3E-18 137.6 -3.6 65 140-206 218-293 (670)
68 1lnz_A SPO0B-associated GTP-bi 99.3 3.5E-12 1.2E-16 114.3 9.3 95 20-130 154-248 (342)
69 1znw_A Guanylate kinase, GMP k 99.3 1.8E-12 6.1E-17 107.8 6.2 53 141-196 140-202 (207)
70 2iw3_A Elongation factor 3A; a 99.3 1.6E-13 5.5E-18 136.9 -0.8 61 140-204 917-980 (986)
71 2iw3_A Elongation factor 3A; a 99.2 3.1E-13 1.1E-17 134.8 -3.6 163 12-207 449-631 (986)
72 2npi_A Protein CLP1; CLP1-PCF1 99.2 2.1E-13 7E-18 126.8 -5.2 164 16-206 130-333 (460)
73 3ux8_A Excinuclease ABC, A sub 99.2 1.4E-12 4.9E-17 126.6 -2.2 59 146-206 566-635 (670)
74 2qtf_A Protein HFLX, GTP-bindi 99.2 3.9E-11 1.3E-15 108.4 7.4 92 21-129 175-268 (364)
75 2gj8_A MNME, tRNA modification 99.1 1.1E-10 3.9E-15 93.7 8.4 91 23-130 3-95 (172)
76 4gp7_A Metallophosphoesterase; 99.1 8.3E-12 2.8E-16 100.8 0.2 29 17-45 2-30 (171)
77 1htw_A HI0065; nucleotide-bind 99.1 5.3E-11 1.8E-15 95.1 2.9 49 13-73 22-70 (158)
78 3lxw_A GTPase IMAP family memb 99.0 2.1E-10 7E-15 98.0 6.3 90 23-129 20-116 (247)
79 3lxx_A GTPase IMAP family memb 99.0 5.5E-10 1.9E-14 94.5 7.5 89 24-129 29-123 (239)
80 1mky_A Probable GTP-binding pr 99.0 5.4E-10 1.8E-14 103.2 7.3 88 26-130 3-93 (439)
81 3sop_A Neuronal-specific septi 99.0 1.1E-10 3.9E-15 101.1 1.7 68 25-103 3-75 (270)
82 2ehv_A Hypothetical protein PH 99.0 1.5E-11 5.3E-16 104.0 -3.8 34 13-46 18-52 (251)
83 3iby_A Ferrous iron transport 99.0 4.1E-10 1.4E-14 96.8 4.7 148 26-194 3-164 (256)
84 1xzp_A Probable tRNA modificat 99.0 2.2E-10 7.5E-15 107.1 3.2 92 22-130 241-335 (482)
85 2wji_A Ferrous iron transport 99.0 2.3E-09 7.7E-14 85.2 8.7 86 25-128 4-91 (165)
86 1mky_A Probable GTP-binding pr 98.9 1E-09 3.4E-14 101.4 7.1 90 24-130 180-275 (439)
87 3b1v_A Ferrous iron uptake tra 98.9 1.3E-09 4.5E-14 94.5 6.9 87 25-130 4-92 (272)
88 3i8s_A Ferrous iron transport 98.9 1E-09 3.6E-14 95.1 5.5 154 25-198 4-170 (274)
89 2hjg_A GTP-binding protein ENG 98.9 1.2E-09 3.9E-14 100.9 4.8 89 25-130 4-94 (436)
90 2vf7_A UVRA2, excinuclease ABC 98.8 8.9E-11 3E-15 115.9 -4.1 59 146-206 753-822 (842)
91 2qm8_A GTPase/ATPase; G protei 98.8 1.3E-09 4.5E-14 97.3 3.8 49 13-72 44-92 (337)
92 3k53_A Ferrous iron transport 98.8 2.4E-09 8.2E-14 92.4 5.1 88 25-130 4-93 (271)
93 3a1s_A Iron(II) transport prot 98.8 3.6E-09 1.2E-13 90.9 5.1 151 25-196 6-166 (258)
94 4dcu_A GTP-binding protein ENG 98.8 2.2E-09 7.6E-14 99.6 4.1 89 25-130 24-114 (456)
95 1z6g_A Guanylate kinase; struc 98.8 1.9E-09 6.6E-14 90.2 3.1 37 12-48 11-47 (218)
96 3pih_A Uvrabc system protein A 98.8 1.3E-09 4.4E-14 108.6 2.2 60 146-207 828-898 (916)
97 3gee_A MNME, tRNA modification 98.8 1.7E-09 5.9E-14 100.8 2.7 94 21-131 230-325 (476)
98 2xtp_A GTPase IMAP family memb 98.8 1.5E-08 5.3E-13 86.5 8.3 90 24-130 22-117 (260)
99 2wjg_A FEOB, ferrous iron tran 98.8 6.5E-09 2.2E-13 83.7 5.4 87 25-129 8-96 (188)
100 2dyk_A GTP-binding protein; GT 98.8 1.7E-08 5.9E-13 78.8 7.3 87 26-129 3-90 (161)
101 2r6f_A Excinuclease ABC subuni 98.7 1.3E-09 4.3E-14 108.4 0.1 59 146-206 868-937 (972)
102 3euj_A Chromosome partition pr 98.7 3.4E-09 1.1E-13 98.7 2.8 51 12-74 18-68 (483)
103 2f9l_A RAB11B, member RAS onco 98.7 1.6E-08 5.6E-13 82.6 6.5 60 25-99 6-65 (199)
104 1oix_A RAS-related protein RAB 98.7 1.9E-08 6.6E-13 81.9 6.8 61 25-100 30-90 (191)
105 2ygr_A Uvrabc system protein A 98.7 1.7E-09 5.8E-14 107.8 0.5 59 146-206 886-955 (993)
106 3geh_A MNME, tRNA modification 98.7 3.1E-09 1.1E-13 98.8 1.4 94 20-130 220-315 (462)
107 3b85_A Phosphate starvation-in 98.7 1.8E-09 6.2E-14 90.0 -0.9 31 17-47 15-45 (208)
108 2hjg_A GTP-binding protein ENG 98.7 3.3E-08 1.1E-12 91.2 7.3 89 25-130 176-269 (436)
109 3lnc_A Guanylate kinase, GMP k 98.6 8.4E-09 2.9E-13 86.7 2.6 56 11-66 14-71 (231)
110 2v9p_A Replication protein E1; 98.6 7.6E-09 2.6E-13 91.0 2.0 35 13-47 115-149 (305)
111 1zp6_A Hypothetical protein AT 98.6 3.1E-08 1.1E-12 80.3 5.5 42 19-73 4-45 (191)
112 3b9q_A Chloroplast SRP recepto 98.6 1.1E-08 3.6E-13 90.1 2.9 48 15-73 91-138 (302)
113 4dhe_A Probable GTP-binding pr 98.6 1.8E-08 6E-13 83.6 4.1 91 24-130 29-127 (223)
114 2e87_A Hypothetical protein PH 98.6 4.7E-08 1.6E-12 87.7 6.9 91 22-129 165-257 (357)
115 3def_A T7I23.11 protein; chlor 98.6 6E-08 2.1E-12 83.2 7.2 84 24-128 36-126 (262)
116 1pui_A ENGB, probable GTP-bind 98.6 1.8E-08 6.1E-13 82.7 3.7 30 19-48 21-50 (210)
117 2obl_A ESCN; ATPase, hydrolase 98.6 2.2E-08 7.4E-13 89.8 4.3 52 13-76 61-112 (347)
118 2pt7_A CAG-ALFA; ATPase, prote 98.6 9.4E-09 3.2E-13 91.5 1.8 47 15-72 162-208 (330)
119 2qag_B Septin-6, protein NEDD5 98.6 8E-09 2.8E-13 94.7 1.2 35 14-48 30-66 (427)
120 3ec1_A YQEH GTPase; atnos1, at 98.6 1.2E-08 4.2E-13 92.1 2.2 86 23-128 161-255 (369)
121 2eyu_A Twitching motility prot 98.6 7.8E-09 2.7E-13 89.1 0.8 47 14-73 17-64 (261)
122 2gza_A Type IV secretion syste 98.6 1.9E-08 6.4E-13 90.7 3.2 46 15-71 166-211 (361)
123 4dcu_A GTP-binding protein ENG 98.6 1.2E-07 4.1E-12 87.9 8.7 91 23-130 194-289 (456)
124 1lvg_A Guanylate kinase, GMP k 98.6 1.7E-08 5.9E-13 83.1 2.6 44 22-65 2-47 (198)
125 2lkc_A Translation initiation 98.5 1.7E-07 5.9E-12 74.4 7.8 83 22-128 6-88 (178)
126 2qu8_A Putative nucleolar GTP- 98.5 1.1E-07 3.8E-12 79.4 6.9 90 24-130 29-120 (228)
127 4a74_A DNA repair and recombin 98.5 5.5E-08 1.9E-12 80.9 4.9 30 19-48 20-49 (231)
128 2jeo_A Uridine-cytidine kinase 98.5 3E-08 1E-12 84.2 3.4 40 8-47 9-48 (245)
129 2bbw_A Adenylate kinase 4, AK4 98.5 7E-09 2.4E-13 88.1 -0.8 37 23-70 26-65 (246)
130 2og2_A Putative signal recogni 98.5 2.6E-08 9E-13 89.5 2.9 48 15-73 148-195 (359)
131 1s96_A Guanylate kinase, GMP k 98.5 3.2E-08 1.1E-12 83.0 2.9 29 20-48 12-40 (219)
132 3a00_A Guanylate kinase, GMP k 98.5 2.6E-08 9E-13 81.0 2.3 43 24-66 1-45 (186)
133 1z06_A RAS-related protein RAB 98.5 1.3E-07 4.4E-12 76.3 6.4 86 22-128 18-103 (189)
134 2dpy_A FLII, flagellum-specifi 98.5 5.5E-08 1.9E-12 89.8 4.7 48 13-72 147-194 (438)
135 1h65_A Chloroplast outer envel 98.5 1.5E-07 5.3E-12 80.9 7.2 87 25-128 40-129 (270)
136 3tr0_A Guanylate kinase, GMP k 98.5 5.1E-08 1.7E-12 79.9 3.6 30 19-48 2-31 (205)
137 3tw8_B RAS-related protein RAB 98.5 1.7E-07 5.9E-12 74.3 6.6 82 25-128 10-91 (181)
138 2yhs_A FTSY, cell division pro 98.5 3.9E-08 1.3E-12 91.6 3.1 48 14-72 283-330 (503)
139 3tkl_A RAS-related protein RAB 98.5 1.5E-07 5.3E-12 75.9 6.1 82 25-128 17-98 (196)
140 1u0l_A Probable GTPase ENGC; p 98.5 3.9E-08 1.3E-12 86.3 2.6 45 18-73 163-210 (301)
141 2ew1_A RAS-related protein RAB 98.5 1.9E-07 6.3E-12 76.8 6.4 84 23-128 25-108 (201)
142 1ek0_A Protein (GTP-binding pr 98.5 2.4E-07 8.4E-12 72.6 6.7 82 25-128 4-85 (170)
143 2y8e_A RAB-protein 6, GH09086P 98.5 1.8E-07 6.2E-12 74.1 5.9 82 25-128 15-96 (179)
144 3pqc_A Probable GTP-binding pr 98.5 1.4E-07 4.7E-12 76.0 5.1 85 25-129 24-115 (195)
145 1puj_A YLQF, conserved hypothe 98.5 1.8E-07 6E-12 81.5 6.1 62 22-103 118-180 (282)
146 3c8u_A Fructokinase; YP_612366 98.5 5.2E-08 1.8E-12 80.6 2.6 41 21-72 19-62 (208)
147 2i3b_A HCR-ntpase, human cance 98.5 2.8E-08 9.6E-13 81.5 0.9 37 24-73 1-37 (189)
148 2bme_A RAB4A, RAS-related prot 98.5 2.7E-07 9.1E-12 73.9 6.6 82 25-128 11-92 (186)
149 1sq5_A Pantothenate kinase; P- 98.4 3.5E-08 1.2E-12 86.8 1.1 40 22-72 78-122 (308)
150 3t5d_A Septin-7; GTP-binding p 98.4 4.1E-07 1.4E-11 78.5 7.8 64 25-101 9-78 (274)
151 3qq5_A Small GTP-binding prote 98.4 5.8E-08 2E-12 89.2 2.4 88 25-128 35-123 (423)
152 1g16_A RAS-related protein SEC 98.4 2.9E-07 9.9E-12 72.2 6.2 82 25-128 4-85 (170)
153 1jwy_B Dynamin A GTPase domain 98.4 3.7E-07 1.3E-11 79.9 7.4 25 25-49 25-49 (315)
154 2il1_A RAB12; G-protein, GDP, 98.4 3.3E-07 1.1E-11 74.3 6.5 82 25-128 27-108 (192)
155 1wms_A RAB-9, RAB9, RAS-relate 98.4 3.5E-07 1.2E-11 72.4 6.5 82 25-128 8-89 (177)
156 1rj9_A FTSY, signal recognitio 98.4 7.9E-08 2.7E-12 84.6 2.9 40 23-73 101-140 (304)
157 1t9h_A YLOQ, probable GTPase E 98.4 3E-08 1E-12 87.4 0.1 40 18-68 167-206 (307)
158 2yv5_A YJEQ protein; hydrolase 98.4 1E-07 3.4E-12 83.8 3.5 45 16-72 157-204 (302)
159 3thx_A DNA mismatch repair pro 98.4 2.3E-08 7.8E-13 100.0 -0.8 34 11-44 649-682 (934)
160 3cph_A RAS-related protein SEC 98.4 2.5E-07 8.5E-12 75.8 5.6 85 22-128 18-102 (213)
161 2a5j_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 73.5 6.8 85 22-128 19-103 (191)
162 1kgd_A CASK, peripheral plasma 98.4 1.4E-07 4.9E-12 76.2 4.0 43 23-65 4-48 (180)
163 1svi_A GTP-binding protein YSX 98.4 1.8E-07 6.2E-12 75.5 4.6 86 24-129 23-116 (195)
164 3t34_A Dynamin-related protein 98.4 6E-07 2.1E-11 80.5 8.3 35 12-49 25-59 (360)
165 1z2a_A RAS-related protein RAB 98.4 3.1E-07 1.1E-11 71.9 5.7 82 25-128 6-87 (168)
166 3r7w_A Gtpase1, GTP-binding pr 98.4 2.7E-07 9.1E-12 81.1 5.7 91 23-131 2-93 (307)
167 2bcg_Y Protein YP2, GTP-bindin 98.4 5.7E-07 2E-11 73.5 7.4 83 25-129 9-91 (206)
168 3cbq_A GTP-binding protein REM 98.4 3.4E-07 1.1E-11 74.7 5.7 83 25-128 24-106 (195)
169 1z08_A RAS-related protein RAB 98.4 2.9E-07 1E-11 72.3 5.2 82 25-128 7-88 (170)
170 3h2y_A GTPase family protein; 98.4 1.3E-07 4.4E-12 85.4 3.4 86 23-128 159-254 (368)
171 1vg8_A RAS-related protein RAB 98.4 5.2E-07 1.8E-11 73.5 6.8 84 24-129 8-91 (207)
172 1z0f_A RAB14, member RAS oncog 98.4 7.3E-07 2.5E-11 70.5 7.4 83 24-128 15-97 (179)
173 2oil_A CATX-8, RAS-related pro 98.4 3.4E-07 1.2E-11 73.9 5.6 83 24-128 25-107 (193)
174 1tf7_A KAIC; homohexamer, hexa 98.4 6.8E-08 2.3E-12 91.1 1.4 51 11-72 25-78 (525)
175 1u8z_A RAS-related protein RAL 98.4 7.3E-07 2.5E-11 69.6 7.1 81 25-128 5-85 (168)
176 3q85_A GTP-binding protein REM 98.4 4.3E-07 1.5E-11 71.4 5.7 83 25-128 3-85 (169)
177 1ky3_A GTP-binding protein YPT 98.4 4.2E-07 1.4E-11 72.1 5.7 83 25-128 9-91 (182)
178 2oap_1 GSPE-2, type II secreti 98.4 1.2E-07 4.2E-12 89.1 2.9 46 15-71 251-296 (511)
179 2gf9_A RAS-related protein RAB 98.4 5.8E-07 2E-11 72.4 6.6 83 24-128 22-104 (189)
180 1pzn_A RAD51, DNA repair and r 98.4 6.1E-08 2.1E-12 86.9 0.7 46 18-72 125-175 (349)
181 2efe_B Small GTP-binding prote 98.4 7.3E-07 2.5E-11 70.9 6.9 82 25-128 13-94 (181)
182 2g6b_A RAS-related protein RAB 98.3 5.2E-07 1.8E-11 71.6 5.9 82 25-128 11-93 (180)
183 1zbd_A Rabphilin-3A; G protein 98.3 9.5E-07 3.2E-11 71.9 7.5 83 25-129 9-91 (203)
184 1lw7_A Transcriptional regulat 98.3 8.4E-08 2.9E-12 86.3 1.2 43 15-68 159-207 (365)
185 2f7s_A C25KG, RAS-related prot 98.3 2.2E-07 7.7E-12 76.6 3.7 106 12-129 13-118 (217)
186 3clv_A RAB5 protein, putative; 98.3 6.6E-07 2.2E-11 72.1 6.4 26 24-49 7-32 (208)
187 2rcn_A Probable GTPase ENGC; Y 98.3 2.7E-07 9.4E-12 82.8 4.4 37 22-69 213-250 (358)
188 1x3s_A RAS-related protein RAB 98.3 5.3E-07 1.8E-11 72.6 5.7 83 25-129 16-98 (195)
189 2qnr_A Septin-2, protein NEDD5 98.3 1.5E-07 5E-12 82.7 2.5 65 25-100 19-88 (301)
190 2p5s_A RAS and EF-hand domain 98.3 9E-07 3.1E-11 72.0 7.1 83 24-128 28-110 (199)
191 3e70_C DPA, signal recognition 98.3 1.2E-07 3.9E-12 84.4 1.9 42 21-73 126-167 (328)
192 2www_A Methylmalonic aciduria 98.3 1.9E-07 6.7E-12 83.6 3.3 26 22-47 72-97 (349)
193 2bov_A RAla, RAS-related prote 98.3 1E-06 3.5E-11 71.6 7.3 82 25-129 15-96 (206)
194 3ney_A 55 kDa erythrocyte memb 98.3 3.4E-07 1.2E-11 75.5 4.4 44 22-65 17-62 (197)
195 4dsu_A GTPase KRAS, isoform 2B 98.3 6.5E-07 2.2E-11 71.5 6.0 81 25-128 5-85 (189)
196 2o52_A RAS-related protein RAB 98.3 4.1E-07 1.4E-11 74.3 4.6 84 23-128 24-107 (200)
197 3bc1_A RAS-related protein RAB 98.3 1E-06 3.6E-11 70.5 6.9 89 25-128 12-103 (195)
198 3aez_A Pantothenate kinase; tr 98.3 2E-07 6.8E-12 82.3 2.7 28 21-48 87-114 (312)
199 2q3h_A RAS homolog gene family 98.3 7.9E-07 2.7E-11 72.3 6.2 86 20-128 16-101 (201)
200 1r2q_A RAS-related protein RAB 98.3 1.2E-06 4.1E-11 68.6 7.0 82 25-128 7-88 (170)
201 3ihw_A Centg3; RAS, centaurin, 98.3 7.5E-07 2.6E-11 71.9 5.9 72 24-128 20-95 (184)
202 2a9k_A RAS-related protein RAL 98.3 1.3E-06 4.4E-11 69.6 7.3 81 25-128 19-99 (187)
203 2h57_A ADP-ribosylation factor 98.3 6.5E-07 2.2E-11 72.2 5.6 82 22-128 19-100 (190)
204 3tau_A Guanylate kinase, GMP k 98.3 4.6E-07 1.6E-11 74.9 4.7 44 22-65 6-51 (208)
205 1z0j_A RAB-22, RAS-related pro 98.3 1E-06 3.5E-11 69.1 6.5 76 25-128 7-88 (170)
206 2fn4_A P23, RAS-related protei 98.3 8.3E-07 2.8E-11 70.3 5.9 81 25-128 10-90 (181)
207 1ye8_A Protein THEP1, hypothet 98.3 3E-07 1E-11 74.5 3.2 24 25-48 1-24 (178)
208 2cxx_A Probable GTP-binding pr 98.3 1E-06 3.5E-11 70.6 6.3 54 26-100 3-56 (190)
209 1kao_A RAP2A; GTP-binding prot 98.3 2E-06 6.9E-11 66.9 7.6 81 25-128 4-84 (167)
210 1f5n_A Interferon-induced guan 98.3 2.1E-06 7E-11 81.9 8.9 67 25-102 39-105 (592)
211 2o8b_B DNA mismatch repair pro 98.3 9.8E-08 3.4E-12 96.4 -0.3 37 11-48 769-812 (1022)
212 2qpt_A EH domain-containing pr 98.3 1.9E-06 6.3E-11 81.8 8.4 106 24-130 65-200 (550)
213 3izq_1 HBS1P, elongation facto 98.3 1.4E-06 4.9E-11 83.5 7.6 85 22-130 165-280 (611)
214 1fzq_A ADP-ribosylation factor 98.3 1.7E-06 5.6E-11 69.5 6.9 74 24-128 16-93 (181)
215 4e22_A Cytidylate kinase; P-lo 98.3 2.5E-07 8.7E-12 78.9 2.2 38 19-67 22-62 (252)
216 3t5g_A GTP-binding protein RHE 98.3 1.6E-06 5.5E-11 69.0 6.7 81 25-128 7-87 (181)
217 2j69_A Bacterial dynamin-like 98.2 3.9E-07 1.3E-11 88.7 3.2 104 22-130 67-212 (695)
218 1f6b_A SAR1; gtpases, N-termin 98.2 1.5E-06 5.1E-11 70.9 6.3 77 25-128 26-102 (198)
219 3dz8_A RAS-related protein RAB 98.2 7.1E-07 2.4E-11 72.1 4.3 86 21-128 20-105 (191)
220 2hup_A RAS-related protein RAB 98.2 1.7E-06 6E-11 70.6 6.7 82 25-128 30-111 (201)
221 1m2o_B GTP-binding protein SAR 98.2 2E-06 6.9E-11 69.6 7.0 77 25-128 24-100 (190)
222 2aka_B Dynamin-1; fusion prote 98.2 6.7E-07 2.3E-11 77.5 4.3 25 25-49 27-51 (299)
223 3cpj_B GTP-binding protein YPT 98.2 1.6E-06 5.4E-11 72.0 6.4 83 25-129 14-96 (223)
224 1cr0_A DNA primase/helicase; R 98.2 2.7E-07 9.1E-12 80.3 1.7 38 11-48 22-59 (296)
225 1c1y_A RAS-related protein RAP 98.2 2.2E-06 7.5E-11 66.9 6.7 81 25-128 4-84 (167)
226 3asz_A Uridine kinase; cytidin 98.2 5.1E-07 1.8E-11 74.3 3.2 28 21-48 3-30 (211)
227 1qhl_A Protein (cell division 98.2 4.5E-08 1.5E-12 82.6 -3.3 42 20-73 24-65 (227)
228 2fg5_A RAB-22B, RAS-related pr 98.2 2.1E-06 7.2E-11 69.4 6.5 80 25-128 24-105 (192)
229 2hxs_A RAB-26, RAS-related pro 98.2 6E-07 2.1E-11 71.1 3.1 83 25-128 7-89 (178)
230 2bdt_A BH3686; alpha-beta prot 98.2 4.9E-07 1.7E-11 73.2 2.5 24 23-46 1-24 (189)
231 1p9r_A General secretion pathw 98.2 5E-07 1.7E-11 82.8 2.9 40 22-72 165-204 (418)
232 3oes_A GTPase rhebl1; small GT 98.2 1.6E-06 5.5E-11 70.6 5.5 84 22-128 22-105 (201)
233 2h17_A ADP-ribosylation factor 98.2 1.2E-06 4E-11 70.2 4.6 79 23-128 20-98 (181)
234 2j41_A Guanylate kinase; GMP, 98.2 8E-07 2.7E-11 72.6 3.7 29 20-48 2-30 (207)
235 2ce2_X GTPase HRAS; signaling 98.2 3.4E-06 1.2E-10 65.4 7.0 81 25-128 4-84 (166)
236 1r8s_A ADP-ribosylation factor 98.2 4.1E-06 1.4E-10 65.3 7.6 76 26-128 2-77 (164)
237 2ged_A SR-beta, signal recogni 98.2 3.7E-06 1.3E-10 67.7 7.4 82 23-128 47-128 (193)
238 1mh1_A RAC1; GTP-binding, GTPa 98.2 2.9E-06 9.9E-11 67.5 6.7 81 25-128 6-86 (186)
239 3q72_A GTP-binding protein RAD 98.2 1.4E-06 4.8E-11 68.2 4.7 79 25-128 3-82 (166)
240 3lvq_E ARF-GAP with SH3 domain 98.2 1.9E-06 6.4E-11 80.4 6.0 81 22-129 320-400 (497)
241 3cnl_A YLQF, putative uncharac 98.2 1.6E-06 5.5E-11 74.6 5.1 58 25-102 100-158 (262)
242 2fu5_C RAS-related protein RAB 98.2 4.1E-07 1.4E-11 72.7 1.2 82 25-128 9-90 (183)
243 2gco_A H9, RHO-related GTP-bin 98.2 3.5E-06 1.2E-10 68.7 6.8 94 12-128 12-106 (201)
244 2erx_A GTP-binding protein DI- 98.2 5.4E-06 1.8E-10 64.9 7.7 80 25-128 4-84 (172)
245 3reg_A RHO-like small GTPase; 98.1 1.9E-06 6.6E-11 69.6 5.1 82 24-128 23-104 (194)
246 4eun_A Thermoresistant glucoki 98.1 9.6E-07 3.3E-11 72.4 3.3 26 22-47 27-52 (200)
247 2atv_A RERG, RAS-like estrogen 98.1 4.2E-06 1.4E-10 67.7 7.2 82 23-128 27-108 (196)
248 2iwr_A Centaurin gamma 1; ANK 98.1 2.9E-06 9.8E-11 67.3 6.1 75 25-128 8-82 (178)
249 2ewv_A Twitching motility prot 98.1 5.4E-07 1.9E-11 81.4 1.9 39 21-70 133-172 (372)
250 1ksh_A ARF-like protein 2; sma 98.1 2.4E-06 8.1E-11 68.4 5.5 80 22-128 16-95 (186)
251 2nzj_A GTP-binding protein REM 98.1 3.3E-06 1.1E-10 66.5 6.2 82 25-128 5-87 (175)
252 3kkq_A RAS-related protein M-R 98.1 3.1E-06 1.1E-10 67.4 6.0 82 24-128 18-99 (183)
253 1tf7_A KAIC; homohexamer, hexa 98.1 6.7E-08 2.3E-12 91.1 -4.5 31 18-48 275-305 (525)
254 3con_A GTPase NRAS; structural 98.1 3E-06 1E-10 68.0 5.9 81 25-128 22-102 (190)
255 2atx_A Small GTP binding prote 98.1 4.4E-06 1.5E-10 67.3 6.9 81 25-128 19-99 (194)
256 1upt_A ARL1, ADP-ribosylation 98.1 4.1E-06 1.4E-10 65.7 6.4 77 22-129 5-85 (171)
257 3szr_A Interferon-induced GTP- 98.1 6.8E-07 2.3E-11 85.8 2.1 36 26-72 47-83 (608)
258 3bwd_D RAC-like GTP-binding pr 98.1 3E-06 1E-10 67.3 5.6 82 24-128 8-89 (182)
259 3j2k_7 ERF3, eukaryotic polype 98.1 3.8E-06 1.3E-10 77.4 7.0 27 22-48 15-41 (439)
260 2yc2_C IFT27, small RAB-relate 98.1 6.6E-07 2.2E-11 72.8 1.7 86 23-128 19-106 (208)
261 2f1r_A Molybdopterin-guanine d 98.1 4.2E-07 1.4E-11 73.3 0.5 37 25-72 3-42 (171)
262 2j0v_A RAC-like GTP-binding pr 98.1 5.9E-06 2E-10 67.6 7.3 83 24-129 9-91 (212)
263 1zd9_A ADP-ribosylation factor 98.1 3.8E-06 1.3E-10 67.6 6.0 81 22-128 20-100 (188)
264 4bas_A ADP-ribosylation factor 98.1 3.5E-06 1.2E-10 68.0 5.6 80 23-129 16-97 (199)
265 4gzl_A RAS-related C3 botulinu 98.1 2.5E-06 8.4E-11 69.9 4.7 82 24-128 30-111 (204)
266 4aby_A DNA repair protein RECN 98.1 6.3E-07 2.1E-11 81.6 1.1 55 146-203 317-380 (415)
267 1zj6_A ADP-ribosylation factor 98.1 3.4E-06 1.2E-10 67.7 5.4 80 23-129 15-94 (187)
268 1moz_A ARL1, ADP-ribosylation 98.1 2.4E-06 8.1E-11 68.0 3.9 75 23-128 17-95 (183)
269 2j1l_A RHO-related GTP-binding 98.1 3.6E-06 1.2E-10 69.4 5.0 81 25-128 35-115 (214)
270 2fv8_A H6, RHO-related GTP-bin 98.1 4.9E-06 1.7E-10 68.1 5.8 81 25-128 26-106 (207)
271 3uie_A Adenylyl-sulfate kinase 98.1 1.1E-06 3.7E-11 72.1 1.8 44 17-72 18-63 (200)
272 2qag_C Septin-7; cell cycle, c 98.0 3.7E-06 1.3E-10 77.0 5.4 24 26-49 33-56 (418)
273 3p26_A Elongation factor 1 alp 98.0 4.8E-06 1.6E-10 77.7 6.1 85 22-130 31-146 (483)
274 2gf0_A GTP-binding protein DI- 98.0 1.1E-05 3.9E-10 64.9 7.6 82 24-129 8-90 (199)
275 3llu_A RAS-related GTP-binding 98.0 5E-06 1.7E-10 67.4 5.4 86 23-129 19-106 (196)
276 3q3j_B RHO-related GTP-binding 98.0 3.9E-06 1.3E-10 69.3 4.8 84 23-129 26-109 (214)
277 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.3E-06 4.6E-11 72.3 1.9 37 12-48 10-47 (235)
278 1m7b_A RND3/RHOE small GTP-bin 98.0 7.2E-06 2.4E-10 65.7 6.1 81 25-128 8-88 (184)
279 3vaa_A Shikimate kinase, SK; s 98.0 2.5E-06 8.7E-11 69.8 3.5 39 9-47 10-48 (199)
280 1nij_A Hypothetical protein YJ 98.0 1.5E-06 5.2E-11 76.7 2.1 45 25-72 5-49 (318)
281 3l0i_B RAS-related protein RAB 98.0 3.7E-07 1.3E-11 74.3 -2.0 82 25-128 34-115 (199)
282 1gwn_A RHO-related GTP-binding 98.0 7.9E-06 2.7E-10 67.1 6.1 82 24-128 28-109 (205)
283 1n0w_A DNA repair protein RAD5 98.0 3.9E-06 1.3E-10 70.2 4.2 45 19-72 19-68 (243)
284 3kta_A Chromosome segregation 98.0 3.4E-06 1.2E-10 67.7 3.7 33 15-48 18-50 (182)
285 1wb1_A Translation elongation 98.0 7.8E-06 2.7E-10 76.2 6.5 82 25-130 20-108 (482)
286 1rz3_A Hypothetical protein rb 98.0 2.4E-06 8.1E-11 70.2 2.3 28 20-47 18-45 (201)
287 2zej_A Dardarin, leucine-rich 98.0 4.5E-06 1.5E-10 67.0 4.0 24 25-48 3-26 (184)
288 3c5c_A RAS-like protein 12; GD 98.0 8.8E-06 3E-10 65.5 5.6 81 24-128 21-101 (187)
289 2x2e_A Dynamin-1; nitration, h 98.0 6.5E-06 2.2E-10 73.6 5.3 25 25-49 32-56 (353)
290 2vp4_A Deoxynucleoside kinase; 98.0 2.9E-06 9.8E-11 71.2 2.8 31 17-47 13-43 (230)
291 3jvv_A Twitching mobility prot 97.9 2.2E-06 7.4E-11 77.0 1.8 29 20-48 119-147 (356)
292 2qag_A Septin-2, protein NEDD5 97.9 5.5E-06 1.9E-10 74.4 4.3 25 25-49 38-62 (361)
293 2cjw_A GTP-binding protein GEM 97.9 4.5E-06 1.5E-10 67.7 3.4 47 25-71 7-54 (192)
294 2fh5_B SR-beta, signal recogni 97.9 2.2E-05 7.7E-10 64.2 7.4 81 24-128 7-88 (214)
295 3t1o_A Gliding protein MGLA; G 97.9 7.4E-06 2.5E-10 65.7 4.2 25 25-49 15-39 (198)
296 2g3y_A GTP-binding protein GEM 97.9 9.9E-06 3.4E-10 67.2 4.9 47 25-71 38-85 (211)
297 3ec2_A DNA replication protein 97.9 4.1E-06 1.4E-10 67.2 2.5 30 19-48 33-62 (180)
298 1kag_A SKI, shikimate kinase I 97.9 5.1E-06 1.8E-10 65.9 3.0 25 23-47 3-27 (173)
299 2kjq_A DNAA-related protein; s 97.9 3.5E-06 1.2E-10 66.1 1.9 26 23-48 35-60 (149)
300 2x8a_A Nuclear valosin-contain 97.9 5.7E-06 2E-10 71.5 3.3 31 16-48 38-68 (274)
301 2dy1_A Elongation factor G; tr 97.9 2.6E-05 9E-10 75.5 8.2 95 20-131 5-110 (665)
302 2b6h_A ADP-ribosylation factor 97.9 9.6E-06 3.3E-10 65.6 4.2 75 23-128 28-106 (192)
303 1knq_A Gluconate kinase; ALFA/ 97.9 7.2E-06 2.4E-10 65.3 3.3 26 22-47 6-31 (175)
304 3izy_P Translation initiation 97.8 4.6E-06 1.6E-10 78.7 2.3 85 23-130 3-87 (537)
305 3cr8_A Sulfate adenylyltranfer 97.8 4.7E-06 1.6E-10 79.0 2.2 43 20-73 365-409 (552)
306 3th5_A RAS-related C3 botulinu 97.1 2.2E-06 7.6E-11 69.8 0.0 84 23-129 29-112 (204)
307 1nrj_B SR-beta, signal recogni 97.8 2.5E-05 8.4E-10 64.1 6.4 82 24-129 12-93 (218)
308 3o47_A ADP-ribosylation factor 97.8 8.8E-06 3E-10 72.1 3.6 80 23-129 164-243 (329)
309 2x77_A ADP-ribosylation factor 97.8 1.3E-05 4.6E-10 64.2 4.4 79 23-128 21-99 (189)
310 2xex_A Elongation factor G; GT 97.8 1.3E-05 4.4E-10 78.0 4.9 82 25-130 11-110 (693)
311 2wkq_A NPH1-1, RAS-related C3 97.8 2.5E-05 8.6E-10 68.2 6.4 85 21-128 152-236 (332)
312 3dpu_A RAB family protein; roc 97.8 9.1E-06 3.1E-10 76.6 3.6 89 22-130 39-133 (535)
313 2qt1_A Nicotinamide riboside k 97.8 1.3E-05 4.4E-10 65.8 4.0 33 16-48 13-45 (207)
314 3sjy_A Translation initiation 97.8 1.5E-05 5.3E-10 72.4 4.8 98 24-131 8-111 (403)
315 3gj0_A GTP-binding nuclear pro 97.8 7.2E-06 2.5E-10 67.7 2.4 82 24-129 15-98 (221)
316 3thx_B DNA mismatch repair pro 97.8 9.4E-06 3.2E-10 81.0 3.3 38 10-47 659-696 (918)
317 1nlf_A Regulatory protein REPA 97.8 1.2E-05 4E-10 69.3 3.4 37 11-47 17-53 (279)
318 1wb9_A DNA mismatch repair pro 97.8 1.4E-05 4.7E-10 78.9 4.0 37 11-48 595-631 (800)
319 2cvh_A DNA repair and recombin 97.7 1.6E-05 5.3E-10 65.4 3.6 32 15-46 10-42 (220)
320 4djt_A GTP-binding nuclear pro 97.7 1.4E-05 4.6E-10 65.7 3.3 86 23-129 10-95 (218)
321 2qor_A Guanylate kinase; phosp 97.7 1.2E-05 4.2E-10 65.9 2.7 47 20-66 8-56 (204)
322 3mca_A HBS1, elongation factor 97.7 1.3E-05 4.3E-10 76.7 3.0 23 25-47 178-200 (592)
323 1svm_A Large T antigen; AAA+ f 97.7 1.6E-05 5.5E-10 71.8 3.3 34 14-47 159-192 (377)
324 3tr5_A RF-3, peptide chain rel 97.7 5.5E-05 1.9E-09 71.3 7.0 83 24-130 13-117 (528)
325 3zvr_A Dynamin-1; hydrolase, D 97.7 5.2E-05 1.8E-09 74.2 7.0 37 25-61 52-88 (772)
326 2p67_A LAO/AO transport system 97.7 1.5E-05 5E-10 71.0 2.8 32 16-47 48-79 (341)
327 3q5d_A Atlastin-1; G protein, 97.7 3.3E-05 1.1E-09 71.2 5.2 71 25-101 68-153 (447)
328 1ewq_A DNA mismatch repair pro 97.7 2E-05 7E-10 77.3 3.6 35 11-48 566-600 (765)
329 2h5e_A Peptide chain release f 97.7 6.1E-05 2.1E-09 71.0 6.7 26 22-47 11-36 (529)
330 2elf_A Protein translation elo 97.6 3.1E-05 1.1E-09 69.8 4.2 70 26-127 23-92 (370)
331 1ex7_A Guanylate kinase; subst 97.6 2.5E-05 8.6E-10 63.6 3.3 40 27-66 4-45 (186)
332 1cke_A CK, MSSA, protein (cyti 97.6 2.8E-05 9.4E-10 64.4 3.6 24 24-47 5-28 (227)
333 3tqc_A Pantothenate kinase; bi 97.6 2.4E-05 8.1E-10 69.2 3.3 24 25-48 93-116 (321)
334 3nwj_A ATSK2; P loop, shikimat 97.6 8.2E-06 2.8E-10 69.6 -0.0 37 11-47 32-71 (250)
335 3qf7_A RAD50; ABC-ATPase, ATPa 97.6 2.4E-05 8.3E-10 70.3 3.0 29 16-45 16-44 (365)
336 1zo1_I IF2, translation initia 97.6 3E-05 1E-09 72.5 3.5 83 24-130 4-86 (501)
337 1vma_A Cell division protein F 97.6 2.2E-05 7.5E-10 68.9 2.4 43 19-72 99-141 (306)
338 2o5v_A DNA replication and rep 97.6 3.1E-05 1.1E-09 69.5 3.4 33 14-47 17-49 (359)
339 1dar_A EF-G, elongation factor 97.6 0.0001 3.5E-09 71.6 7.2 83 25-131 13-113 (691)
340 1f60_A Elongation factor EEF1A 97.6 5.3E-05 1.8E-09 70.1 4.8 23 25-47 8-30 (458)
341 1ixz_A ATP-dependent metallopr 97.5 3.5E-05 1.2E-09 65.2 3.0 29 17-47 44-72 (254)
342 1kk1_A EIF2gamma; initiation o 97.5 9E-05 3.1E-09 67.4 5.8 96 25-130 11-118 (410)
343 1jjv_A Dephospho-COA kinase; P 97.5 4.3E-05 1.5E-09 62.4 3.4 23 25-47 3-25 (206)
344 1in4_A RUVB, holliday junction 97.5 8.8E-06 3E-10 72.1 -1.0 42 25-73 52-93 (334)
345 2c78_A Elongation factor TU-A; 97.5 5.8E-05 2E-09 68.6 4.3 85 23-131 10-111 (405)
346 1zu4_A FTSY; GTPase, signal re 97.5 3.4E-05 1.2E-09 68.1 2.6 47 15-72 96-142 (320)
347 2px0_A Flagellar biosynthesis 97.5 3.5E-05 1.2E-09 67.3 2.6 27 22-48 103-129 (296)
348 1y63_A LMAJ004144AAA protein; 97.5 6E-05 2E-09 60.7 3.8 32 16-47 2-33 (184)
349 2if2_A Dephospho-COA kinase; a 97.5 4.5E-05 1.5E-09 62.2 3.1 23 25-47 2-24 (204)
350 1zun_B Sulfate adenylate trans 97.5 0.00015 5.2E-09 66.5 6.9 24 25-48 25-48 (434)
351 1jny_A EF-1-alpha, elongation 97.5 6.3E-05 2.1E-09 69.1 4.2 23 25-47 7-29 (435)
352 1iy2_A ATP-dependent metallopr 97.5 4.7E-05 1.6E-09 65.4 3.1 41 17-72 68-108 (278)
353 2pez_A Bifunctional 3'-phospho 97.5 5.5E-05 1.9E-09 60.4 3.3 26 22-47 3-28 (179)
354 1m7g_A Adenylylsulfate kinase; 97.5 1.8E-05 6.3E-10 65.2 0.4 46 14-70 15-62 (211)
355 3lda_A DNA repair protein RAD5 97.5 7.8E-05 2.7E-09 67.8 4.4 29 19-47 173-203 (400)
356 1w1w_A Structural maintenance 97.4 6.4E-05 2.2E-09 68.8 3.6 30 20-49 22-51 (430)
357 4dkx_A RAS-related protein RAB 97.4 0.00028 9.5E-09 58.6 6.2 23 25-47 14-36 (216)
358 1e69_A Chromosome segregation 97.4 7.6E-05 2.6E-09 65.7 2.8 30 17-47 18-47 (322)
359 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.5E-09 57.6 3.3 24 21-45 21-44 (149)
360 2ywe_A GTP-binding protein LEP 97.3 0.00027 9.3E-09 67.5 6.6 88 25-131 7-109 (600)
361 1ls1_A Signal recognition part 97.3 6.8E-05 2.3E-09 65.4 2.2 39 23-72 97-135 (295)
362 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.8E-09 58.7 3.1 25 22-46 2-26 (186)
363 1s0u_A EIF-2-gamma, translatio 97.3 0.00023 7.8E-09 64.7 5.6 97 24-130 8-116 (408)
364 1r5b_A Eukaryotic peptide chai 97.3 0.00012 4E-09 68.0 3.6 22 25-46 44-65 (467)
365 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4.1E-09 59.6 3.1 24 24-47 18-41 (202)
366 2yvu_A Probable adenylyl-sulfa 97.3 0.00015 5E-09 58.3 3.5 28 20-47 9-36 (186)
367 1odf_A YGR205W, hypothetical 3 97.3 0.00013 4.6E-09 63.4 3.3 27 22-48 29-55 (290)
368 1d2e_A Elongation factor TU (E 97.3 0.00014 4.9E-09 65.9 3.5 91 24-130 3-101 (397)
369 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0003 1E-08 65.8 5.4 69 15-98 57-134 (499)
370 2dr3_A UPF0273 protein PH0284; 97.2 0.00019 6.6E-09 59.7 3.4 33 13-45 11-44 (247)
371 3cb4_D GTP-binding protein LEP 97.2 0.0003 1E-08 67.2 5.0 87 26-131 6-107 (599)
372 2rdo_7 EF-G, elongation factor 97.2 0.00062 2.1E-08 66.3 7.3 90 24-130 10-117 (704)
373 1n0u_A EF-2, elongation factor 97.2 0.00026 8.8E-09 70.3 4.6 99 25-131 20-134 (842)
374 4eaq_A DTMP kinase, thymidylat 97.1 0.00025 8.6E-09 59.4 3.5 29 20-48 22-50 (229)
375 1q3t_A Cytidylate kinase; nucl 97.1 0.00026 8.8E-09 59.3 3.5 25 22-46 14-38 (236)
376 1sxj_E Activator 1 40 kDa subu 97.1 0.00016 5.6E-09 63.8 2.3 21 26-46 38-58 (354)
377 3kb2_A SPBC2 prophage-derived 97.1 0.00027 9.4E-09 55.4 3.3 23 25-47 2-24 (173)
378 3m6a_A ATP-dependent protease 97.1 0.00023 7.9E-09 67.2 3.3 37 23-70 107-143 (543)
379 3lw7_A Adenylate kinase relate 97.1 0.00029 1E-08 55.1 3.3 20 25-44 2-21 (179)
380 1kht_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 55.8 3.5 24 24-47 3-26 (192)
381 2rhm_A Putative kinase; P-loop 97.1 0.00036 1.2E-08 55.9 3.6 26 22-47 3-28 (193)
382 1qhx_A CPT, protein (chloramph 97.0 0.00041 1.4E-08 54.9 3.7 25 23-47 2-26 (178)
383 3qks_A DNA double-strand break 97.0 0.00035 1.2E-08 57.3 3.3 21 25-45 24-44 (203)
384 2v54_A DTMP kinase, thymidylat 97.0 0.00045 1.6E-08 55.9 3.9 25 23-47 3-27 (204)
385 2jaq_A Deoxyguanosine kinase; 97.0 0.00039 1.3E-08 56.1 3.4 23 25-47 1-23 (205)
386 3qkt_A DNA double-strand break 97.0 0.00034 1.2E-08 62.0 3.3 21 25-45 24-44 (339)
387 1g7s_A Translation initiation 97.0 0.00044 1.5E-08 66.0 4.2 97 25-130 6-105 (594)
388 1np6_A Molybdopterin-guanine d 97.0 0.00036 1.2E-08 56.0 3.1 23 25-47 7-29 (174)
389 1vht_A Dephospho-COA kinase; s 97.0 0.00043 1.5E-08 57.0 3.4 25 23-47 3-27 (218)
390 3k1j_A LON protease, ATP-depen 97.0 0.00033 1.1E-08 67.0 3.0 33 16-48 52-84 (604)
391 1ukz_A Uridylate kinase; trans 96.9 0.00054 1.9E-08 55.5 3.8 26 22-47 13-38 (203)
392 2wwf_A Thymidilate kinase, put 96.9 0.00057 1.9E-08 55.6 3.6 25 22-46 8-32 (212)
393 2plr_A DTMP kinase, probable t 96.9 0.00054 1.9E-08 55.6 3.5 25 23-47 3-27 (213)
394 2c95_A Adenylate kinase 1; tra 96.9 0.00063 2.1E-08 54.6 3.8 26 22-47 7-32 (196)
395 1ly1_A Polynucleotide kinase; 96.9 0.00059 2E-08 53.9 3.5 22 25-46 3-24 (181)
396 1nn5_A Similar to deoxythymidy 96.9 0.00066 2.3E-08 55.3 3.7 25 22-46 7-31 (215)
397 2p5t_B PEZT; postsegregational 96.9 0.00038 1.3E-08 59.0 2.2 28 20-47 28-55 (253)
398 3fb4_A Adenylate kinase; psych 96.8 0.00063 2.2E-08 55.7 3.4 22 25-46 1-22 (216)
399 1aky_A Adenylate kinase; ATP:A 96.8 0.00071 2.4E-08 55.7 3.7 25 23-47 3-27 (220)
400 1tev_A UMP-CMP kinase; ploop, 96.8 0.00066 2.3E-08 54.2 3.4 23 24-46 3-25 (196)
401 2bwj_A Adenylate kinase 5; pho 96.8 0.00041 1.4E-08 55.8 2.1 28 20-47 8-35 (199)
402 3ice_A Transcription terminati 96.8 0.00053 1.8E-08 62.0 2.9 32 16-47 166-197 (422)
403 3iij_A Coilin-interacting nucl 96.8 0.00071 2.4E-08 53.8 3.4 25 22-46 9-33 (180)
404 3dl0_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 55.6 3.4 23 25-47 1-23 (216)
405 2cdn_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 54.5 3.8 26 22-47 18-43 (201)
406 1uf9_A TT1252 protein; P-loop, 96.8 0.00081 2.8E-08 54.2 3.6 24 24-47 8-31 (203)
407 3trf_A Shikimate kinase, SK; a 96.8 0.00084 2.9E-08 53.5 3.5 24 24-47 5-28 (185)
408 2wsm_A Hydrogenase expression/ 96.7 0.00071 2.4E-08 55.4 3.0 23 25-47 31-53 (221)
409 1zd8_A GTP:AMP phosphotransfer 96.7 0.00087 3E-08 55.5 3.5 26 22-47 5-30 (227)
410 1via_A Shikimate kinase; struc 96.7 0.00075 2.6E-08 53.5 2.9 22 26-47 6-27 (175)
411 1j8m_F SRP54, signal recogniti 96.7 0.00048 1.6E-08 60.1 1.9 31 17-48 92-122 (297)
412 1gtv_A TMK, thymidylate kinase 96.7 0.0004 1.4E-08 56.6 1.3 23 25-47 1-23 (214)
413 2iyv_A Shikimate kinase, SK; t 96.7 0.00078 2.7E-08 53.7 2.9 23 24-46 2-24 (184)
414 2z0h_A DTMP kinase, thymidylat 96.7 0.00094 3.2E-08 53.6 3.4 23 25-47 1-23 (197)
415 2pt5_A Shikimate kinase, SK; a 96.7 0.001 3.4E-08 52.1 3.4 22 25-46 1-22 (168)
416 1nks_A Adenylate kinase; therm 96.7 0.00091 3.1E-08 53.3 3.2 23 25-47 2-24 (194)
417 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00076 2.6E-08 60.2 2.9 31 17-47 15-47 (359)
418 3r20_A Cytidylate kinase; stru 96.7 0.001 3.5E-08 56.0 3.5 24 23-46 8-31 (233)
419 2pbr_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 53.0 3.4 22 25-46 1-22 (195)
420 2vli_A Antibiotic resistance p 96.6 0.00074 2.5E-08 53.6 2.3 25 23-47 4-28 (183)
421 2ze6_A Isopentenyl transferase 96.6 0.00093 3.2E-08 56.7 3.0 22 26-47 3-24 (253)
422 1zak_A Adenylate kinase; ATP:A 96.6 0.0011 3.6E-08 54.7 3.3 25 23-47 4-28 (222)
423 3avx_A Elongation factor TS, e 96.6 0.0015 5E-08 66.6 4.8 91 24-130 296-394 (1289)
424 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4.2E-08 55.5 3.6 25 22-46 27-51 (243)
425 1lv7_A FTSH; alpha/beta domain 96.6 0.00097 3.3E-08 56.2 3.0 23 26-48 47-69 (257)
426 1qf9_A UMP/CMP kinase, protein 96.6 0.0012 4.3E-08 52.5 3.5 24 23-46 5-28 (194)
427 3vqt_A RF-3, peptide chain rel 96.6 0.0031 1.1E-07 59.6 6.6 83 25-131 32-136 (548)
428 3hr8_A Protein RECA; alpha and 96.6 0.00095 3.3E-08 59.7 2.9 29 19-47 56-84 (356)
429 1gvn_B Zeta; postsegregational 96.6 0.0011 3.9E-08 57.3 3.3 26 22-47 31-56 (287)
430 2ffh_A Protein (FFH); SRP54, s 96.6 0.0011 3.8E-08 60.6 3.3 26 23-48 97-122 (425)
431 3be4_A Adenylate kinase; malar 96.5 0.0013 4.3E-08 54.2 3.2 25 23-47 4-28 (217)
432 1e4v_A Adenylate kinase; trans 96.5 0.0014 4.7E-08 53.8 3.3 22 25-46 1-22 (214)
433 3j25_A Tetracycline resistance 96.5 0.0032 1.1E-07 60.6 6.3 92 26-131 4-103 (638)
434 1e6c_A Shikimate kinase; phosp 96.5 0.0015 5.2E-08 51.2 3.3 23 25-47 3-25 (173)
435 2xb4_A Adenylate kinase; ATP-b 96.5 0.0016 5.5E-08 53.9 3.4 23 25-47 1-23 (223)
436 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0016 5.6E-08 55.3 3.5 24 23-46 3-26 (260)
437 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 53.6 3.4 23 25-47 1-23 (206)
438 3c5h_A Glucocorticoid receptor 96.4 0.0033 1.1E-07 53.1 5.3 25 23-47 18-51 (255)
439 1xjc_A MOBB protein homolog; s 96.4 0.0016 5.5E-08 52.0 3.1 23 25-47 5-27 (169)
440 3ake_A Cytidylate kinase; CMP 96.4 0.0018 6.1E-08 52.4 3.4 22 26-47 4-25 (208)
441 2hf9_A Probable hydrogenase ni 96.4 0.0015 5.2E-08 53.6 3.0 24 24-47 38-61 (226)
442 4ad8_A DNA repair protein RECN 96.4 0.00067 2.3E-08 63.6 0.9 30 17-47 54-83 (517)
443 1sxj_C Activator 1 40 kDa subu 96.4 0.00096 3.3E-08 58.8 1.8 30 18-47 38-69 (340)
444 1zuh_A Shikimate kinase; alpha 96.4 0.002 6.8E-08 50.5 3.4 22 25-46 8-29 (168)
445 1ak2_A Adenylate kinase isoenz 96.4 0.0023 7.8E-08 53.2 3.8 28 20-47 12-39 (233)
446 2zr9_A Protein RECA, recombina 96.3 0.0019 6.5E-08 57.5 3.3 29 19-47 56-84 (349)
447 3cf0_A Transitional endoplasmi 96.3 0.0021 7.2E-08 55.7 3.5 28 20-47 45-72 (301)
448 1ypw_A Transitional endoplasmi 96.3 0.0017 5.9E-08 64.1 3.3 29 20-48 234-262 (806)
449 3p32_A Probable GTPase RV1496/ 96.3 0.0022 7.4E-08 57.1 3.4 25 23-47 78-102 (355)
450 3umf_A Adenylate kinase; rossm 96.3 0.0027 9.1E-08 52.8 3.7 31 17-47 22-52 (217)
451 1uj2_A Uridine-cytidine kinase 96.3 0.0025 8.5E-08 53.7 3.5 24 23-46 21-44 (252)
452 3r7w_B Gtpase2, GTP-binding pr 96.3 0.0048 1.6E-07 54.5 5.3 23 26-48 1-23 (331)
453 2r6a_A DNAB helicase, replicat 96.2 0.0014 4.7E-08 60.4 1.7 34 14-47 193-226 (454)
454 3kl4_A SRP54, signal recogniti 96.2 0.0017 5.7E-08 59.6 1.9 25 23-47 96-120 (433)
455 2grj_A Dephospho-COA kinase; T 96.1 0.0032 1.1E-07 51.2 3.3 24 24-47 12-35 (192)
456 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0021 7.2E-08 57.8 2.3 26 23-48 34-59 (392)
457 3auy_A DNA double-strand break 96.1 0.0031 1E-07 56.5 3.3 21 25-45 26-46 (371)
458 2f6r_A COA synthase, bifunctio 96.1 0.0036 1.2E-07 53.9 3.6 23 24-46 75-97 (281)
459 3v9p_A DTMP kinase, thymidylat 96.0 0.0032 1.1E-07 52.7 3.0 28 20-47 21-48 (227)
460 3gmt_A Adenylate kinase; ssgci 96.0 0.004 1.4E-07 52.2 3.4 23 24-46 8-30 (230)
461 2qen_A Walker-type ATPase; unk 96.0 0.0021 7.3E-08 55.9 1.7 25 23-47 30-54 (350)
462 3bos_A Putative DNA replicatio 96.0 0.0048 1.6E-07 50.6 3.7 25 23-47 51-75 (242)
463 2ce7_A Cell division protein F 95.9 0.0036 1.2E-07 58.1 3.1 26 20-47 47-72 (476)
464 2qby_A CDC6 homolog 1, cell di 95.9 0.0039 1.3E-07 55.0 3.1 25 23-47 44-68 (386)
465 1v5w_A DMC1, meiotic recombina 95.9 0.0051 1.7E-07 54.5 3.8 29 19-47 117-145 (343)
466 3llm_A ATP-dependent RNA helic 95.9 0.0032 1.1E-07 52.4 2.3 27 20-46 72-98 (235)
467 1jbk_A CLPB protein; beta barr 95.9 0.0061 2.1E-07 47.8 3.8 25 23-47 42-66 (195)
468 3b9p_A CG5977-PA, isoform A; A 95.9 0.0049 1.7E-07 52.9 3.5 26 23-48 53-78 (297)
469 2ius_A DNA translocase FTSK; n 95.9 0.0037 1.3E-07 58.5 2.8 32 15-46 158-189 (512)
470 4edh_A DTMP kinase, thymidylat 95.8 0.0053 1.8E-07 50.7 3.5 25 23-47 5-29 (213)
471 3zvl_A Bifunctional polynucleo 95.8 0.0077 2.6E-07 54.8 4.8 26 22-47 256-281 (416)
472 1ltq_A Polynucleotide kinase; 95.8 0.0051 1.8E-07 52.9 3.5 22 25-46 3-24 (301)
473 1fnn_A CDC6P, cell division co 95.8 0.0051 1.8E-07 54.4 3.6 23 26-48 46-68 (389)
474 2h92_A Cytidylate kinase; ross 95.8 0.005 1.7E-07 50.3 3.1 24 24-47 3-26 (219)
475 1sky_E F1-ATPase, F1-ATP synth 95.8 0.0039 1.3E-07 57.6 2.5 26 22-47 149-174 (473)
476 2w58_A DNAI, primosome compone 95.7 0.0062 2.1E-07 49.1 3.2 23 25-47 55-77 (202)
477 1a7j_A Phosphoribulokinase; tr 95.7 0.0035 1.2E-07 54.3 1.7 25 23-47 4-28 (290)
478 3h4m_A Proteasome-activating n 95.6 0.007 2.4E-07 51.5 3.5 27 21-47 48-74 (285)
479 4fcw_A Chaperone protein CLPB; 95.6 0.0067 2.3E-07 52.2 3.4 23 25-47 48-70 (311)
480 2ocp_A DGK, deoxyguanosine kin 95.6 0.0073 2.5E-07 50.3 3.5 24 24-47 2-25 (241)
481 2z43_A DNA repair and recombin 95.6 0.0066 2.3E-07 53.2 3.3 29 19-47 102-130 (324)
482 1p5z_B DCK, deoxycytidine kina 95.6 0.004 1.4E-07 52.7 1.8 26 22-47 22-47 (263)
483 3lv8_A DTMP kinase, thymidylat 95.6 0.0079 2.7E-07 50.5 3.6 26 22-47 25-50 (236)
484 4tmk_A Protein (thymidylate ki 95.5 0.009 3.1E-07 49.4 3.6 25 23-47 2-26 (213)
485 3tmk_A Thymidylate kinase; pho 95.5 0.0098 3.4E-07 49.3 3.7 27 22-48 3-29 (216)
486 3bh0_A DNAB-like replicative h 95.5 0.005 1.7E-07 53.9 2.0 35 12-46 56-90 (315)
487 2p65_A Hypothetical protein PF 95.4 0.0082 2.8E-07 47.0 2.9 24 24-47 43-66 (187)
488 1l8q_A Chromosomal replication 95.4 0.0073 2.5E-07 52.6 2.8 25 23-47 36-60 (324)
489 3ld9_A DTMP kinase, thymidylat 95.3 0.011 3.7E-07 49.3 3.6 26 22-47 19-44 (223)
490 2zts_A Putative uncharacterize 95.3 0.013 4.4E-07 48.4 3.8 35 11-45 16-51 (251)
491 3d3q_A TRNA delta(2)-isopenten 95.2 0.011 3.6E-07 52.5 3.3 23 25-47 8-30 (340)
492 2v3c_C SRP54, signal recogniti 95.2 0.0071 2.4E-07 55.4 2.2 23 25-47 100-122 (432)
493 1njg_A DNA polymerase III subu 95.2 0.011 3.9E-07 47.9 3.3 22 26-47 47-68 (250)
494 3crm_A TRNA delta(2)-isopenten 95.2 0.012 4.2E-07 51.7 3.6 23 25-47 6-28 (323)
495 2j37_W Signal recognition part 95.2 0.011 3.6E-07 55.3 3.3 23 23-45 100-122 (504)
496 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.013 4.5E-07 48.9 3.6 26 22-47 37-62 (262)
497 1sxj_D Activator 1 41 kDa subu 95.1 0.011 3.9E-07 51.5 3.2 23 25-47 59-81 (353)
498 1yrb_A ATP(GTP)binding protein 95.0 0.014 4.6E-07 49.0 3.3 29 23-51 13-46 (262)
499 2qmh_A HPR kinase/phosphorylas 95.0 0.013 4.6E-07 48.0 3.1 25 23-47 33-57 (205)
500 4hlc_A DTMP kinase, thymidylat 95.0 0.015 5E-07 47.7 3.4 25 23-47 1-25 (205)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.8e-38 Score=288.36 Aligned_cols=249 Identities=52% Similarity=0.945 Sum_probs=216.2
Q ss_pred CCCCCCCCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCccceeeeCCcchHHHhhh
Q 024748 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQL 79 (263)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~ 79 (263)
|||+.. .+..+..++++..|.++||||+||||||||||+|+|... .++++||+|+.|+.|.+.++|.++..++..
T Consensus 1 ~~~~~~----~~~~~~~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~ 76 (392)
T 1ni3_A 1 MPPKKQ----QEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 76 (392)
T ss_dssp --------------CCCCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH
T ss_pred CCCCcc----CcchhhHhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh
Confidence 666531 334457899999999999999999999999999999887 569999999999999999999999999999
Q ss_pred cCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccH
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~ 159 (263)
+.|.+..+..+.++|++|+....+.++++++.++..++.+|.+++++++|++..+.++++..||.++++++|+++.+.|+
T Consensus 77 ~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 77 YKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp HCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHH
Confidence 99988877789999999999888877788889999999999999999999988888888889999999999999999999
Q ss_pred HHHHHHHHHHHHH-hhhcc---chhHHHHHHHHHHHHHHhhcC-CccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchh
Q 024748 160 EFMERRIEDVEKS-MKRSN---DKQLKIEHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (263)
Q Consensus 160 ~~~~k~~~~~~~~-~~~~~---~h~~~~i~~l~d~i~~~L~~G-~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~ 234 (263)
..+++.++.+.+. ...+. +|.+..++++|+++..+|++| ++++.+++++++.++++.+++++.||++|++|+.++
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~ 236 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecch
Confidence 9999999988876 42221 599999999999997799999 999989999998899998899999999999999998
Q ss_pred hhhcccCccHHHHHHHHHh
Q 024748 235 DYQRKKNKFLPKIHAWCVL 253 (263)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (263)
++.+..+.+++++++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (392)
T 1ni3_A 237 DFLRQKNKYLPKIKKWIDE 255 (392)
T ss_dssp HHTTTCCSSHHHHHHHHHT
T ss_pred hhcccchHHHHHHHHHHHh
Confidence 7753347789999988765
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-35 Score=265.95 Aligned_cols=251 Identities=60% Similarity=1.009 Sum_probs=170.9
Q ss_pred CCCCCCCCCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhc
Q 024748 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (263)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~ 80 (263)
|||+.. .+-++.+...+++..+.++||||+||||||||||+|+|....++++||+|+.|+.|.+.+++.++.+++..+
T Consensus 1 ~~~~~~--~~~~~~~~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 1 MPPKKG--GDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -----------------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCcc--cccchhhHHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeecccc
Confidence 666521 111455678999999999999999999999999999999876799999999999999999999999999999
Q ss_pred CCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHH
Q 024748 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (263)
Q Consensus 81 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~ 160 (263)
.|....+..++++|++|+....+.+.++++.++..++.+|++++|+|++++.++.++.+..+|.+++.++++++.+.|++
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~ 158 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEE 158 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHH
Confidence 88887788899999999998777777788899999999999999999999888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHhhcC-Cccc-cCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhc
Q 024748 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 161 ~~~k~~~~~~~~~~~~~~h~~~~i~~l~d~i~~~L~~G-~~~~-~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~ 238 (263)
.+++.++++.+....++......+..+++++..+|++| +.++ ..++++++.++++.+++++.||++|++|+.++++.+
T Consensus 159 ~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~ 238 (396)
T 2ohf_A 159 MIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238 (396)
T ss_dssp HHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH
T ss_pred HHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc
Confidence 99988876654322211233345678899999999999 6665 467888888888888999999999999999988876
Q ss_pred ccCccHHHHHHHHHh
Q 024748 239 KKNKFLPKIHAWCVL 253 (263)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (263)
..++++.++++++..
T Consensus 239 ~~n~~~~~v~~~~~~ 253 (396)
T 2ohf_A 239 KKNKWLIKIKEWVDK 253 (396)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh
Confidence 557889999988654
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.98 E-value=2.1e-31 Score=240.45 Aligned_cols=228 Identities=42% Similarity=0.754 Sum_probs=187.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
+|.+++|||.||||||||||+|+|....++++||+|+.|+.|.+.+++.++.+++..+.|.+..+..++++|++|+....
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 36789999999999999999999987666899999999999999999999999999999988777889999999999877
Q ss_pred ccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccchhHH
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~h~~~ 182 (263)
+.+.+++++++..++.+|++++|+|++++.++.++.+..||..++.++++++.+.|++.+++.+.++.+.. +++.+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~-k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRA-KGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh-hccchhHH
Confidence 66667788899999999999999999999888888888999999999999999999999999998887654 22224556
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCccHHHHHHHHHh
Q 024748 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWCVL 253 (263)
Q Consensus 183 ~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~~~~~~~~~~~ 253 (263)
...++++++..+|++|.+++...+++++.++++++.+++.||++|++|+.++++. .+.++++++.++..
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~--~n~~~~~v~~~~~~ 228 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAK 228 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc--ccHHHHHHHHHHHH
Confidence 6778899999999999998877888888889999999999999999999987762 36788888888654
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.96 E-value=5.3e-29 Score=225.69 Aligned_cols=227 Identities=45% Similarity=0.673 Sum_probs=186.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC----CCCcceehhhhhcccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS----AVPAFLEIHDIAGLVR 100 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~----~~~~~l~~~d~~g~~~ 100 (263)
.++||||+||||||||||+|++....++++|++|+.|+.|.+.+++.++..++..+.+.. ..+..+.++|++|+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 368999999999999999999987667899999999999999999999888888888776 4456799999999998
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccchh
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~h~ 180 (263)
..+.+.+++++++..++.+|++++|+|++++.++.++.+..||..++.++++++.+.|++.+++++.++.+.. .+ .+.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~-~~-~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RA-DRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh-cc-chh
Confidence 8777778889999999999999999999998888888888999999999999999999999999998877653 22 356
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcc-cCccHHHHHHHHHh
Q 024748 181 LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRK-KNKFLPKIHAWCVL 253 (263)
Q Consensus 181 ~~~i~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~-~~~~~~~~~~~~~~ 253 (263)
......+|+++..+|++|.+++..++++++.++++++.+++.||++|++|+.++++... .+.++++++.++..
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~ 233 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALE 233 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHH
Confidence 66778899999999999988877788888888899999999999999999998765321 25678888887654
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.83 E-value=5.4e-22 Score=172.45 Aligned_cols=177 Identities=15% Similarity=0.179 Sum_probs=127.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. ... .|.+|
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q 92 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-----------SPSHGECHLLGQNLNSWQPKALARTRAVMRQ 92 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-----------CCSSCEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCCcEEEECCEECCcCCHHHHhheEEEEec
Confidence 45778899999999999999999999999999999994 8999999999987642 111 24444
Q ss_pred C-CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC------CCc
Q 024748 84 S-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV------DPV 144 (263)
Q Consensus 84 ~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~------~P~ 144 (263)
. .+...+++.|++.+....+........+.+.++.++. ..+.+.....+++ .. +|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p- 166 (266)
T 4g1u_C 93 YSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC-----LALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP- 166 (266)
T ss_dssp CCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTC-----STTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC-
T ss_pred CCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCC-----hhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC-
Confidence 4 3445689999988765433222222233333333331 1111111222333 33 78
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc-c-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRS-N-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~-~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.++...+ . +|+++.+..+||++ .+|.+|+++..|+.
T Consensus 167 -~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v-~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 167 -RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI-MLLAQGKLVACGTP 232 (266)
T ss_dssp -EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred -CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 8999999999999999999888888776443 2 39999999999999 99999999988754
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.82 E-value=5.1e-22 Score=178.87 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=126.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch----H-------HHhhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF----E-------WLCQL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~----~-------~l~~~ 79 (263)
.++...++.++++|++++|+||||||||||+|+|+|+. .|++|.|.++|+++ . .++.+
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v 85 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-----------QPDSGEISLSGKTIFSKNTNLPVRERRLGYL 85 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-----------CCCCcEEEECCEECcccccccchhhCCEEEE
Confidence 45678899999999999999999999999999999994 89999999999876 1 12333
Q ss_pred cCCCCCCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 80 FKPKSAVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 80 ~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
||.. .++..+++.|++.+....... .....++.+.++.++. ..+.+.....+++ +.+|
T Consensus 86 fQ~~-~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-----~~~~~r~~~~LSGGq~QRValArAL~~~P-- 157 (359)
T 3fvq_A 86 VQEG-VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGI-----SELAGRYPHELSGGQQQRAALARALAPDP-- 157 (359)
T ss_dssp CTTC-CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCC--
T ss_pred eCCC-cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHcCC--
Confidence 4432 445689999999886543321 1122233333333331 1122222223333 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.+... .+.+ |+++.+..+|||| .+|++|+++..|+.
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRI-AVMKQGRILQTASP 223 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEE-EEEECCEEEEEeCH
Confidence 89999999999999998888776666543 3433 9999999999999 99999999887754
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.82 E-value=5.2e-22 Score=179.07 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=126.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H---h--hhc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L---C--QLF 80 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l---~--~~~ 80 (263)
..+...++.+|++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. + . -.|
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-----------~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~ 109 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-----------RPTEGSVLVDGQELTTLSESELTKARRQIGM 109 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECSSCCHHHHHHHHTTEEE
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHHHHHHHhCcEEE
Confidence 45788999999999999999999999999999999994 8999999999986531 1 1 114
Q ss_pred CCCC-CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.+|. .++..+++.|++.+...... ......++.+.++.++. ..+.+.....+++ +.+|
T Consensus 110 v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----~~~~~~~~~~LSGGqkQRVaIArAL~~~P-- 182 (366)
T 3tui_C 110 IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----GDKHDSYPSNLSGGQKQRVAIARALASNP-- 182 (366)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----GGGTTCCTTTSCHHHHHHHHHHHHTTTCC--
T ss_pred EeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 4444 44557899999877543221 11112223333333321 1111111122332 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+..+|+......++.++++... +.| |+++.+.++||++ .+|++|+++..|+.
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv-~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV-AVISNGELIEQDTV 248 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEE-EEEETTEEEECCBH
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 899999999999999999988888887543 443 9999999999999 99999999887754
No 8
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.82 E-value=6.1e-20 Score=167.99 Aligned_cols=215 Identities=28% Similarity=0.421 Sum_probs=127.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee----CCcchHHHhhhcCCCC------CCCcceehhhh
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQLFKPKS------AVPAFLEIHDI 95 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~----~g~~~~~l~~~~~~~~------~~~~~l~~~d~ 95 (263)
+++|+|++|+|||||||.|+|....++++||+|+.|+.|.+.+ +..++.. .+.|.. ....++.++|+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~---~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGC---SPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCC---SCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhh---hcccccccccCCcceEEEEEEEC
Confidence 6899999999999999999999855589999999999997543 3333211 122210 00135899999
Q ss_pred hccccCcccccchHHHHHHHHhhhcceeEEeeccCCCce-eeecccCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhh
Q 024748 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDI-IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (263)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~-~~l~~~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~ 174 (263)
+|+....+.+.+++++++..++.+|++++|+|+++..+. ....+..||.+++.++++++...|++.+++.+.++.+...
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 999877666667778888889999999999999875221 0111256899999999999999999999988887775432
Q ss_pred hccchhH-HHH----------HHHHHHHHHHhhcCCccccCCCCHHHHHHHhhhhhhhcCCeEEEEEcchhhhhcccCcc
Q 024748 175 RSNDKQL-KIE----------HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKF 243 (263)
Q Consensus 175 ~~~~h~~-~~i----------~~l~d~i~~~L~~G~~~~~g~~~d~~~e~ir~~~~~~~k~i~~~~nv~~~~~~~~~~~~ 243 (263)
.+. ... ..+ .+.+.++...|..+... ..+++++.+.+.++.+.+.+|++|++|..+.. . +.+
T Consensus 159 ~~~-~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~---~~~ 231 (397)
T 1wxq_A 159 LQK-IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S---DEQ 231 (397)
T ss_dssp SSC-CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C---HHH
T ss_pred hcC-ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c---hHH
Confidence 221 111 111 23455555666777652 36777777778878888899999999987643 1 234
Q ss_pred HHHHHHH
Q 024748 244 LPKIHAW 250 (263)
Q Consensus 244 ~~~~~~~ 250 (263)
++++...
T Consensus 232 l~~l~~~ 238 (397)
T 1wxq_A 232 IKRLVRE 238 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555444
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=2.4e-22 Score=175.38 Aligned_cols=177 Identities=13% Similarity=0.127 Sum_probs=126.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH--H-----Hhh--hcCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LCQ--LFKP 82 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~--~-----l~~--~~~~ 82 (263)
++...++.++++|+++||+||||||||||+|+|+|+ ..|++|.|.++|+++. . +.. .|.+
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~ 90 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVF 90 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEEC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEE
Confidence 478899999999999999999999999999999999 4899999999998661 1 111 2444
Q ss_pred CC--CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh
Q 024748 83 KS--AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 83 ~~--~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
|. .....+++.|++.+...... .......+.+.++.++. ..+.+.....+++ +.+| +
T Consensus 91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~LSgGqkQRv~iAraL~~~P--~ 163 (275)
T 3gfo_A 91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-----EHLKDKPTHCLSFGQKKRVAIAGVLVMEP--K 163 (275)
T ss_dssp SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-----GGGTTSBGGGSCHHHHHHHHHHHHHTTCC--S
T ss_pred cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhcCCcccCCHHHHHHHHHHHHHHcCC--C
Confidence 43 22336899998877543221 11112223333333321 1122222223333 5778 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHh-hhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSM-KRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~-~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
++++|||+...|+......++.+.++. ..+.+ |+++.+..+||++ .+|++|+++..|+..
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv-~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNV-FVMKEGRVILQGNPK 229 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEE-EEEETTEEEEEECHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 999999999999999999888888775 33443 9999999999999 999999999887643
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.81 E-value=7.8e-22 Score=178.88 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=127.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-------HhhhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-------l~~~~~~~ 83 (263)
..+...++.++++|++++|+||||||||||+|+|+|+. +|++|.|.++|+++.. ++.+||..
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-----------TITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-----------CCCCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 45678899999999999999999999999999999994 8999999999987643 22334433
Q ss_pred CCCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|++.+....... .....++.+.++.++. ..+.+.....+++ ..+| ++++
T Consensus 85 -~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~p~~LSGGqrQRVaiArAL~~~P--~lLL 156 (381)
T 3rlf_A 85 -ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEP--SVFL 156 (381)
T ss_dssp -CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTC-----GGGTTCCGGGSCHHHHHHHHHHHHHHHCC--SEEE
T ss_pred -cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhcCChhHCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 445689999999886433221 1112223333333321 1112222223333 4678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+|||+..+|+......++.+.++... +.+ |+++.+..+||+| .+|++|+++..|+.
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI-VVLDAGRVAQVGKP 218 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 99999999999988888888877543 443 9999999999999 99999999887754
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.81 E-value=2.8e-21 Score=167.62 Aligned_cols=177 Identities=11% Similarity=0.121 Sum_probs=124.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-------HHh--hhcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-------~l~--~~~~ 81 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++. .+. ..|.
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v 105 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-----------DFDEGEIIIDGINLKAKDTNLNKVREEVGMV 105 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEESSSTTCCHHHHHHHEEEE
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCcEEEECCEECCCccccHHHHhCcEEEE
Confidence 35678899999999999999999999999999999994 899999999997652 111 1255
Q ss_pred CCC-CCCcceehhhhhcccc-Cccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 82 PKS-AVPAFLEIHDIAGLVR-GAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 82 ~~~-~~~~~l~~~d~~g~~~-~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
+|. .++..+++.|++.+.. .... . ......+.+.++.++. ..+.+.....+++ ..+|
T Consensus 106 ~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~LSgGqkQRv~lAraL~~~p-- 178 (263)
T 2olj_A 106 FQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL-----KDKAHAYPDSLSGGQAQRVAIARALAMEP-- 178 (263)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCC--
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----chHhcCChhhCCHHHHHHHHHHHHHHCCC--
Confidence 554 4455789999987742 1111 1 1111222233333321 1111111222332 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+..++.+.+....+.+ |+.+.+..+||++ .+|++|+++..++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRV-LFMDGGYIIEEGKP 243 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 899999999999999999988888877544433 9999999999999 99999998877653
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.80 E-value=5.1e-21 Score=172.66 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=126.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
......++.++++|++++|+||||||||||+|+|+|+. +|++|.|.++|+.+..+. ..|.+|.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 84 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-----------KPTSGEIYFDDVLVNDIPPKYREVGMVFQNY 84 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTSCGGGTTEEEECSSC
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-----------CCCccEEEECCEECCCCChhhCcEEEEecCc
Confidence 34678899999999999999999999999999999994 899999999998764221 1144444
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+....... .....++.+.++.++. ..+.+.....+++ ..+| +++++
T Consensus 85 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~~~~LSgGq~QRvalArAL~~~P--~lLLL 157 (359)
T 2yyz_A 85 ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-----DNLLDRKPTQLSGGQQQRVALARALVKQP--KVLLF 157 (359)
T ss_dssp CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 445689999999886543221 1111222333333321 1111222223333 5678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+...+..++.+.++... +. ||+.+.+..+||++ .+|++|+++..|+.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri-~vl~~G~i~~~g~~ 218 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI-AVFNQGKLVQYGTP 218 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999888888877543 43 39999999999999 99999999877654
No 13
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.8e-21 Score=174.32 Aligned_cols=108 Identities=27% Similarity=0.501 Sum_probs=91.1
Q ss_pred CCC-cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSH-LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g-~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
+.| ..|||||+||||||||||+|+|....+++|||||+.|..|.+.++|. +++++|+||+..
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~-----------------~i~l~D~pGl~~ 131 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA-----------------KIQMLDLPGIID 131 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE-----------------EEEEEECGGGCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc-----------------EEEEEeCCCccC
Confidence 344 48999999999999999999999888899999999999999999873 589999999999
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecccCCCchhHHHHHHHhhhcc
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~~~~P~~~i~ilde~~~~~d 158 (263)
..+.+.++++++++.++.+|++++|+|++ +|..++.++..++...+
T Consensus 132 ~a~~~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~ 177 (376)
T 4a9a_A 132 GAKDGRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVG 177 (376)
T ss_dssp C-----CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhh
Confidence 88888889999999999999999999983 58778888887765554
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.80 E-value=8e-21 Score=162.67 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=122.3
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-CCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVP 87 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~-~~~ 87 (263)
...++.++++ +++||+||||||||||+++|+|+ .+|++|.|.++|+++.... ..|.+|. .++
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 6788999999 99999999999999999999999 4899999999997653211 1255555 445
Q ss_pred cceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 88 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
..+++.|++.+....+.......++.+.++.++. ..+.+.....+++ ..+| +++++|||+.
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPts 155 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQRVALARALVIQP--RLLLLDEPLS 155 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----TTTTTCCGGGSCHHHHHHHHHHHHHTTCC--SSBEEESTTS
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC-----HHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCCcc
Confidence 5789999987754322110001222233333321 1111111222333 5678 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 156 LKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..|+...+..++.+.+.... +. +|+.+.+..+||++ .+|++|+++..++.
T Consensus 156 ~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV-AVMLNGRIVEKGKL 211 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999988888877543 43 39999999999999 99999998877653
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.79 E-value=3.5e-21 Score=166.99 Aligned_cols=177 Identities=14% Similarity=0.171 Sum_probs=124.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH----------------
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------------- 74 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~---------------- 74 (263)
.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-----------KPSEGAIIVNGQNINLVRDKDGQLKVADKNQ 87 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEEccccccccccccccChhh
Confidence 35678899999999999999999999999999999994 899999999987652
Q ss_pred --HHh--hhcCCCC-CCCcceehhhhhcccc-Cccc-c-cchHHHHHHHHhhhcceeEEeecc-CCCceeeecc------
Q 024748 75 --WLC--QLFKPKS-AVPAFLEIHDIAGLVR-GAHE-G-QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDD------ 139 (263)
Q Consensus 75 --~l~--~~~~~~~-~~~~~l~~~d~~g~~~-~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~-~~~~~~~l~~------ 139 (263)
... ..|.+|. .++..+++.|++.+.. .... . ......+.+.++.++. ..+ .+.....+++
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L-----~~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI-----DERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-----CHHHHTSCGGGSCHHHHHHH
T ss_pred HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC-----CchhhcCCcccCCHHHHHHH
Confidence 111 1255554 4456789999887742 1111 1 1111223333333321 001 1111112232
Q ss_pred ------cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 140 ------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 140 ------~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
..+| +++++|||+...|+...+..++.+.+....+.+ |+++.+..+||++ .+|++|+++..++.
T Consensus 163 ~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 237 (262)
T 1b0u_A 163 SIARALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV-IFLHQGKIEEEGDP 237 (262)
T ss_dssp HHHHHHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred HHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 4678 899999999999999999988888877544433 9999999999999 89999998877653
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=6.7e-21 Score=163.15 Aligned_cols=177 Identities=11% Similarity=0.065 Sum_probs=123.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H-h--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-C--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l-~--~~~~~ 82 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. . . -.|.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 87 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-----------RAQKGKIIFNGQDITNKPAHVINRMGIALVP 87 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCCCCHHHHHhCCEEEEe
Confidence 35678899999999999999999999999999999994 8999999999976531 1 1 12556
Q ss_pred CC-CCCcceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLE 148 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ 148 (263)
|. .++..+++.|++.+...... .......+.+.++..+. +..+.+.....+++ ..+| +++
T Consensus 88 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~----l~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~ll 161 (240)
T 1ji0_A 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR----LKERLKQLGGTLSGGEQQMLAIGRALMSRP--KLL 161 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHH----HHTTTTSBSSSSCHHHHHHHHHHHHHTTCC--SEE
T ss_pred cCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHccc----HhhHhcCChhhCCHHHHHHHHHHHHHHcCC--CEE
Confidence 65 44557899999877542111 11111122222222210 01111111222332 5678 899
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 149 VISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 149 ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++|||+...|+...+..++.+.+....+. +|+...+..+||++ .+|++|+++..++
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYG-YVLETGQIVLEGK 222 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999999999998888887754443 39999999999999 8999999887654
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.79 E-value=5.4e-21 Score=163.28 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=123.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H------hhh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L------CQL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l------~~~ 79 (263)
.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|+++.. . ...
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 86 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-----------KPTEGEVYIDNIKTNDLDDDELTKIRRDKIG 86 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECTTCCHHHHHHHHHHHEE
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCceEEEECCEEcccCCHHHHHHHhhccEE
Confidence 35678899999999999999999999999999999994 8999999999975421 1 112
Q ss_pred cCCCC-CCCcceehhhhhccccCcc---c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cC
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAH---E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SV 141 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~---~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~ 141 (263)
|.+|. .++..+++.|++.+..... . .......+.+.++.++. .+...+.....+++ +.
T Consensus 87 ~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGq~QRv~iAral~~ 162 (235)
T 3tif_A 87 FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EERFANHKPNQLSGGQQQRVAIARALAN 162 (235)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC----CGGGTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC----ChhhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 44554 4455789999887643211 0 11111223333333332 11111111222333 56
Q ss_pred CCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 142 ~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+| +++++|||+...|+......++.+.++... +.+ |+++. .++||++ .+|++|+++..++..
T Consensus 163 ~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i-~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 163 NP--PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERI-IYLKDGEVEREEKLR 230 (235)
T ss_dssp CC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEE-EEEETTEEEEEEECC
T ss_pred CC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEE-EEEECCEEEEEcChh
Confidence 78 899999999999999999988888877543 443 99985 5799999 999999998776544
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.79 E-value=6.5e-21 Score=172.11 Aligned_cols=177 Identities=11% Similarity=0.129 Sum_probs=126.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
.+....++..++.|++++|+||||||||||+|+|+|+. +|++|.|.++|+++.... -.|.+|.
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 84 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-----------KPTSGKIYFDEKDVTELPPKDRNVGLVFQNW 84 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTSCGGGTTEEEECTTC
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHhHCcEEEEecCc
Confidence 35678899999999999999999999999999999994 899999999997763211 1144444
Q ss_pred CCCcceehhhhhccccCccc--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+...... ......++.+.++.++. ..+.+.....+++ ..+| +++++
T Consensus 85 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLL 157 (362)
T 2it1_A 85 ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-----DKLLNRYPWQLSGGQQQRVAIARALVKEP--EVLLL 157 (362)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----TTCTTCCGGGSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chHhhCChhhCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 44568999999987542221 11111223333333321 1111111223333 5678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+......++.++++... +. ||+.+.+..+||++ .+|++|+++..|+.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 218 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRI-AVIREGEILQVGTP 218 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999988888877543 43 39999999999999 99999999877654
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.79 E-value=5.1e-21 Score=172.32 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=126.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
.+....++.++++|++++|+||||||||||+|+|+|+. +|++|.|.++|+.+.... ..|.+|.
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 96 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-----------RPTKGDVWIGGKRVTDLPPQKRNVGLVFQNY 96 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTCCGGGSSEEEECGGG
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCccEEEECCEECCcCChhhCcEEEEecCc
Confidence 45788899999999999999999999999999999994 899999999997763211 1134444
Q ss_pred CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+...... . .....++.+.++.++. ..+.+.....+++ ..+| +++++
T Consensus 97 ~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-----~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLL 169 (355)
T 1z47_A 97 ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-----ESYANRFPHELSGGQQQRVALARALAPRP--QVLLF 169 (355)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----hhHhcCCcccCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 44567999999987543221 1 1111223333333321 1122222223333 5678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+...+..++.++++... +. ||+.+.+..+||++ .+|++|+++..|+.
T Consensus 170 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRV-LVLHEGNVEQFGTP 230 (355)
T ss_dssp ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999998888888776543 43 39999999999999 99999998877654
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.79 E-value=2.1e-21 Score=167.97 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=126.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~--~~~~~ 82 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. .. ..|.+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 88 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-----------KADEGRVYFENKDITNKEPAELYHYGIVRTF 88 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCHHHHHhCCEEEEc
Confidence 35678899999999999999999999999999999994 8999999999976532 11 12566
Q ss_pred CC-CCCcceehhhhhccccCc-c-c------------c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc-------
Q 024748 83 KS-AVPAFLEIHDIAGLVRGA-H-E------------G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------- 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~-~-~------------~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------- 139 (263)
|. .++..+++.|++.+.... + . . ......+.+.++..+. ..+.+.....+++
T Consensus 89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL-----SHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC-----GGGTTSBGGGSCHHHHHHHH
T ss_pred cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC-----chhhCCCchhCCHHHHHHHH
Confidence 65 345578999998775422 1 1 0 0111222233333321 1111222222332
Q ss_pred -----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 140 -----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 -----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
..+| +++++|||+...|+...+..++.+.+....+.+ |+++.+..+||++ .+|++|+++..++..
T Consensus 164 iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~~~ 238 (257)
T 1g6h_A 164 IGRALMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL-YVMFNGQIIAEGRGE 238 (257)
T ss_dssp HHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEE-EEEETTEEEEEEESH
T ss_pred HHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEeCHH
Confidence 4678 899999999999999999988888877644443 9999999999999 899999998776543
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.79 E-value=5.4e-21 Score=171.86 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=124.9
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hhhcCCCC-CC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS-AV 86 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~~~~~~~-~~ 86 (263)
....++.++++|++++|+||||||||||+|+|+|+. +|++|.|.++|+.+..+ .-.|.+|. .+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-----------VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-----------CCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-----------CCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 678899999999999999999999999999999994 89999999999775321 11144444 44
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHh
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAEL 154 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~ 154 (263)
+..+++.|++.+.......... .++.+.++.++. ..+.+.....+++ ..+| +++++|||+
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L-----~~~~~~~~~~LSgGq~QRvalAraL~~~P--~lLLLDEP~ 155 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKI-----EHLLDRNPLTLSGGEQQRVALARALVTNP--KILLLDEPL 155 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTC-----TTTTTSCGGGSCHHHHHHHHHHHHTTSCC--SEEEEESSS
T ss_pred CCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECcc
Confidence 5689999999875432111111 233333333321 1111211223333 5678 899999999
Q ss_pred hhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 155 RLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 155 ~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
...|+...+..++.++++... +. ||+...+..+||++ .+|++|+++..|+.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri-~vl~~G~i~~~g~~ 212 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRI-AVVMDGKLIQVGKP 212 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEE-EEESSSCEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999999999988888877543 43 39999999999999 99999999877653
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.79 E-value=8.8e-21 Score=171.86 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=123.1
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----hhcCCCC-
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~~~~~~~- 84 (263)
......++..+++|++++|+||||||||||+|+|+|+. +|++|.|.++|+.+..+. -.|.+|.
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~ 92 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-----------EPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 92 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEECTTSCGGGGTEEEEEC--
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-----------CCCceEEEECCEECCCCChhhCcEEEEecCc
Confidence 34678899999999999999999999999999999994 899999999997763211 1133343
Q ss_pred CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~il 150 (263)
.++..+++.|++.+....... .....++.+.++.++. ..+.+.....+++ ..+| +++++
T Consensus 93 ~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLL 165 (372)
T 1v43_A 93 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----EELLNRYPAQLSGGQRQRVAVARAIVVEP--DVLLM 165 (372)
T ss_dssp ----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----GGGTTSCTTTCCSSCHHHHHHHHHHTTCC--SEEEE
T ss_pred ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 345589999999886533221 1111223333333321 1111111122333 5678 89999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+..+|+...+..++.+.++... +. +|+...+..+||++ .+|++|+++..|+.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 226 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI-AVMNRGQLLQIGSP 226 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999988888877543 43 39999999999999 99999999877654
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.79 E-value=3.6e-21 Score=163.22 Aligned_cols=174 Identities=16% Similarity=0.058 Sum_probs=120.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--------H--h-hh
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------L--C-QL 79 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--------l--~-~~ 79 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. + . ..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-----------APTEGKVFLEGKEVDYTNEKELSLLRNRKLG 85 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-----------CCSEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence 35678899999999999999999999999999999994 8999999999876421 1 1 12
Q ss_pred cCCCC-CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCc
Q 024748 80 FKPKS-AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 80 ~~~~~-~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~ 144 (263)
|.+|. .++..+++.|++.+....+. . ......+.+.++.++. ..+.+.....+++ ..+|
T Consensus 86 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~qrv~laral~~~p- 159 (224)
T 2pcj_A 86 FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-----GDKLSRKPYELSGGEQQRVAIARALANEP- 159 (224)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----TTCTTCCGGGSCHHHHHHHHHHHHTTTCC-
T ss_pred EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----chhhhCChhhCCHHHHHHHHHHHHHHcCC-
Confidence 55554 44557899998876432211 0 1111222233333321 0111111222332 5678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
+++++|||+...|+...+...+.+.+....+.+ |+.+.+ .+||++ .+|++|+++..|
T Consensus 160 -~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v-~~l~~G~i~~~g 221 (224)
T 2pcj_A 160 -ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRT-LEMKDGKVVGEI 221 (224)
T ss_dssp -SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEE-EEEETTEEEEEE
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEE-EEEECCEEEEEe
Confidence 899999999999999999988888877544433 998887 799999 889999887665
No 24
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=3.8e-21 Score=166.22 Aligned_cols=176 Identities=13% Similarity=0.147 Sum_probs=124.0
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH----Hh--hhcCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPKS 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~----l~--~~~~~~~ 84 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++.. .. ..|.+|.
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~ 96 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-----------KPSSGIVTVFGKNVVEEPHEVRKLISYLPEE 96 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEETTTCHHHHHTTEEEECTT
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCccHHHHhhcEEEEcCC
Confidence 35678899999999999999999999999999999994 8999999999976531 11 1255555
Q ss_pred -CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHH
Q 024748 85 -AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEV 149 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~i 149 (263)
.++..+++.|++.+....+. . ......+.+.++.++. ..+.+..+..+++ ..+| ++++
T Consensus 97 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-----~~~~~~~~~~LSgGq~qRv~lAraL~~~p--~lll 169 (256)
T 1vpl_A 97 AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLIARALMVNP--RLAI 169 (256)
T ss_dssp CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----GGGGGSBGGGCCHHHHHHHHHHHHHTTCC--SEEE
T ss_pred CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-----chHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 34557899998876532111 0 0111222233333321 0111111112332 5678 8999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 150 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 150 lde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+|||+...|+......++.+.+....+.+ |+++.+..+||++ .+|++|+++..++
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI-ALIHNGTIVETGT 229 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE-EEEETTEEEEEEE
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE-EEEECCEEEEecC
Confidence 99999999999999988888877544433 9999999999999 8999999887664
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.78 E-value=4.9e-21 Score=172.61 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=125.1
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh-----hhcCC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC-----QLFKP 82 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~-----~~~~~ 82 (263)
+...++.++++|++++|+||||||||||+|+|+|+. +|++|.|.++|+++.. .. -.|.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~ 88 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-----------VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF 88 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-----------CCSEEEEEETTEEEEETTEESSCGGGSCEEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECcccccccCChhhCCEEEEe
Confidence 677899999999999999999999999999999994 8999999999976532 11 11334
Q ss_pred CC-CCCcceehhhhhccccCcccc--cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhH
Q 024748 83 KS-AVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDL 147 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i 147 (263)
|. .++..+++.|++.+....... .....++.+.++.++. ..+.+.....+++ ..+| ++
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~~~~~~LSGGq~QRvalAraL~~~P--~l 161 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-----HHVLNHFPRELSGAQQQRVALARALVKDP--SL 161 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SE
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHhCC--CE
Confidence 43 445689999999886543221 1111223333333321 1111222223333 5678 89
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 148 EVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 148 ~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++|||+...|+......++.++++... +. ||+.+.+..+||++ .+|++|+++..|+.
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri-~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV-GVLVKGKLVQVGKP 225 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999988888888777533 43 39999999999999 99999998877654
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.78 E-value=7.5e-21 Score=172.43 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=125.0
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH------Hh-----hhc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC-----QLF 80 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~------l~-----~~~ 80 (263)
.....++..+++|++++|+||||||||||+|+|+|+. +|++|.|.++|+.+.. +. -.|
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-----------~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-----------EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-----------CCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-----------CCCccEEEECCEECccccccccCCHhHCCEEE
Confidence 4677899999999999999999999999999999994 8999999999876532 11 114
Q ss_pred CCCC-CCCcceehhhhhccccCccc-c-cchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCch
Q 024748 81 KPKS-AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVR 145 (263)
Q Consensus 81 ~~~~-~~~~~l~~~d~~g~~~~~~~-~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~ 145 (263)
.+|. .++..+++.|++.+...... . .....++.+.++.++. ..+.+.....+++ ..+|
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~~~~LSGGq~QRvalArAL~~~P-- 158 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKP-- 158 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-----GGGTTCCGGGSCHHHHHHHHHHHHHHTCC--
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----chHhcCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 4444 44568999999987643221 1 1111222333333321 1111211222333 5678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhh-cc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~-~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+..+|+...+..++.++++... +. ||+.+.+..+||++ .+|++|+++..|+.
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSP 224 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE-EEEeCCEEEEeCCH
Confidence 899999999999999999888888776543 43 39999999999999 99999999877654
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.77 E-value=2.6e-20 Score=160.34 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=121.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~~ 84 (263)
+....++..+++|++++|+||||||||||+|+|+|+. +|+ |.|.++|+++.. +. ..|.+|.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-----------~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 81 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-----------SGK-GSIQFAGQPLEAWSATKLALHRAYLSQQ 81 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-----------CCE-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCC-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence 4677889999999999999999999999999999994 899 999999987532 11 1255555
Q ss_pred -CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchh-----
Q 024748 85 -AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRD----- 146 (263)
Q Consensus 85 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~----- 146 (263)
.++..+++.|++.+....... ...+.+.++..+. ..+.+.....+++ ..+| +
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~~~~~~ 151 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQHDKTR---TELLNDVAGALAL-----DDKLGRSTNQLSGGEWQRVRLAAVVLQIT--PQANPA 151 (249)
T ss_dssp CCCCTTCBHHHHHHTTCSSTTC---HHHHHHHHHHTTC-----GGGTTSBGGGCCHHHHHHHHHHHHHHHHC--TTTCTT
T ss_pred CccCCCCcHHHHHHHhhccCCc---HHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHHcCC--CcCCCC
Confidence 345578999998875322111 2223333333321 1111111222332 3456 6
Q ss_pred --HHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 147 --LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 147 --i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
++++|||+...|+...+..++.+.+....+.+ |+.+.+..+||++ .+|++|+++..++
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA-WLLKGGKMLASGR 216 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999988888877544433 9999999999999 8999999887654
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.77 E-value=8.9e-21 Score=164.78 Aligned_cols=178 Identities=19% Similarity=0.108 Sum_probs=123.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH--Hh--hhcCCCC--
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS-- 84 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~--l~--~~~~~~~-- 84 (263)
.+....++.++++|+++||+|+||||||||+|+|+|+. +|++|.|.++|..+.. +. ..|.+|.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~ 88 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-----------EPTSGDVLYDGERKKGYEIRRNIGIAFQYPE 88 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECCHHHHGGGEEEECSSGG
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEECCEECchHHhhhhEEEEeccch
Confidence 35678899999999999999999999999999999994 8999999999976532 11 1245554
Q ss_pred CCCcceehhhhhccccCcc-cccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 85 AVPAFLEIHDIAGLVRGAH-EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
..+..+++.|++.+..... ........+.+.++.++.-- ..+.+.....+++ ..+| +++++|
T Consensus 89 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---~~~~~~~~~~LSgGq~qRv~lAraL~~~p--~lllLD 163 (266)
T 2yz2_A 89 DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---DSFKDRVPFFLSGGEKRRVAIASVIVHEP--DILILD 163 (266)
T ss_dssp GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---HHHTTCCGGGSCHHHHHHHHHHHHHTTCC--SEEEEE
T ss_pred hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---cccccCChhhCCHHHHHHHHHHHHHHcCC--CEEEEc
Confidence 2344689999887753221 11111223333333333100 0111111112332 5678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
||+...|+......++.+.+....+.+ |+.+.+..+||++ .+|++|+++..++
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 221 (266)
T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRV-VVLEKGKKVFDGT 221 (266)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEE-EEEETTEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999999988888877544433 9999999999999 8999999887664
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.74 E-value=8.8e-20 Score=158.91 Aligned_cols=179 Identities=13% Similarity=0.082 Sum_probs=119.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|++|.|.++|+++.. +. ..|.+|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q 100 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-----------QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ 100 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEEGGGBCHHHHHHHEEEECS
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCCEEEECCEEcccCCHHHHhccEEEEec
Confidence 45788899999999999999999999999999999994 8999999999977632 11 125566
Q ss_pred CCCCcceehhhhhccccCcccc-cchHHHHHHHHhhhcceeEEe----eccCCCceeeecc------------cCCCchh
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVDGIFHVL----RAFEDPDIIHVDD------------SVDPVRD 146 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~~l~vv----~~~~~~~~~~l~~------------~~~P~~~ 146 (263)
.......++.|++.+....... ... ....... .++.++..+ +.+.+.....+++ ..+| +
T Consensus 101 ~~~l~~~tv~enl~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p--~ 176 (271)
T 2ixe_A 101 EPLLFGRSFRENIAYGLTRTPTMEEI-TAVAMES-GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP--R 176 (271)
T ss_dssp SCCCCSSBHHHHHHTTCSSCCCHHHH-HHHHHHH-TCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC--S
T ss_pred CCccccccHHHHHhhhcccCChHHHH-HHHHHHH-hHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC--C
Confidence 5222235999998875432211 111 0111100 011111100 0011111112222 5678 8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 147 LEVISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 147 i~ilde~~~~~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
++++|||+...|+......++.+.+... .+.+ |+...+.. ||++ .+|.+|+++..++.
T Consensus 177 lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v-~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHI-LFLKEGSVCEQGTH 240 (271)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEE-EEEETTEEEEEECH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 9999999999999999998888887643 2433 99988865 9999 89999998877653
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.72 E-value=6.7e-20 Score=162.07 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=122.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....++.+|++|+++||+|+||||||||+++|+|++ +|+.|.|.++|.++..+ .. .|.+|
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-----------~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q 135 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-----------DISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-----------CCSEEEEEETTEETTSBCHHHHHHTEEEECS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-----------CCCCcEEEECCEEcccCCHHHHhcceEEEec
Confidence 45678899999999999999999999999999999995 89999999999876431 11 26666
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-------CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-------DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-------~~~~~~l~~------------~~~P~ 144 (263)
....+..++.|++.+....... ....+.++.+.+. ..++.+. ......+++ ..+|
T Consensus 136 ~~~lf~~Tv~eNi~~~~~~~~~----~~~~~~~~~~~l~-~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p- 209 (306)
T 3nh6_A 136 DTVLFNDTIADNIRYGRVTAGN----DEVEAAAQAAGIH-DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP- 209 (306)
T ss_dssp SCCCCSEEHHHHHHTTSTTCCH----HHHHHHHHHHTCH-HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC-
T ss_pred CCccCcccHHHHHHhhcccCCH----HHHHHHHHHhCcH-HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC-
Confidence 6444467999999887543221 1122222222110 0111110 000112222 3567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+... +.| |++..+.. ||+| .+|++|+++..|+..
T Consensus 210 -~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-aD~i-~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 210 -GIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN-ADQI-LVIKDGCIVERGRHE 273 (306)
T ss_dssp -SEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT-CSEE-EEEETTEEEEEECHH
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc-CCEE-EEEECCEEEEECCHH
Confidence 89999999999999988888887777643 333 99999876 9999 999999999888643
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.72 E-value=9.4e-20 Score=156.28 Aligned_cols=176 Identities=12% Similarity=0.131 Sum_probs=118.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|++|.|.++|.++.... ..|.||
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 83 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-----------QPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-----------CCSBSCEEETTEESTTTSCSCCTTTCCEECC
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEEhhhCCHHHHHhhEEEEcC
Confidence 46788999999999999999999999999999999994 899999999997654311 125555
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-------CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-------DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-------~~~~~~l~~------------~~~P~ 144 (263)
.......++.|++.+....... ...+.+.++.+.. ...++.+. +.....+++ ..+|
T Consensus 84 ~~~l~~~tv~enl~~~~~~~~~---~~~~~~~l~~~~l-~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p- 158 (243)
T 1mv5_A 84 DSAIMAGTIRENLTYGLEGDYT---DEDLWQVLDLAFA-RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP- 158 (243)
T ss_dssp SSCCCCEEHHHHTTSCTTSCSC---HHHHHHHHHHHTC-TTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC-
T ss_pred CCccccccHHHHHhhhccCCCC---HHHHHHHHHHhCh-HHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC-
Confidence 5322246999998875211111 1122222222211 00111110 001112332 4667
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+..++.+.+.. .+.+ |+...+. .||++ .+|++|+++..++.
T Consensus 159 -~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 159 -KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKI-YFIEKGQITGSGKH 221 (243)
T ss_dssp -SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEE-EEEETTEECCCSCH
T ss_pred -CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEE-EEEECCEEEEeCCH
Confidence 8999999999999998888888777765 3433 9998775 69999 89999998877653
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.72 E-value=3e-19 Score=154.03 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=117.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcc
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF 89 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~ 89 (263)
.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.+. ..++ |.||. .++..
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~----~~i~--~v~q~~~~~~~ 80 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-----------RPIQGKIEVY----QSIG--FVPQFFSSPFA 80 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-----------CCSEEEEEEC----SCEE--EECSCCCCSSC
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEEe----ccEE--EEcCCCccCCC
Confidence 45678899999999999999999999999999999994 8999999832 1223 44444 33446
Q ss_pred eehhhhhccccCccc------ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHH
Q 024748 90 LEIHDIAGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 90 l~~~d~~g~~~~~~~------~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ild 151 (263)
+++.|++.+...... .......+.+.++.++. ..+.+.....+++ ..+| +++++|
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~lllLD 153 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-----THLAKREFTSLSGGQRQLILIARAIASEC--KLILLD 153 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-----GGGTTSBGGGSCHHHHHHHHHHHHHHTTC--SEEEES
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-----hHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEe
Confidence 899999877542110 11111223333333321 1111111222332 5678 899999
Q ss_pred HHhhhccHHHHHHHHHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 152 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
||+...|+...+...+.+.+.... +.+ |+.+.+..+||++ .+|++|+ +..++
T Consensus 154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~-~~~g~ 211 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKT-LLLNKQN-FKFGE 211 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEE-EEEETTE-EEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEeCCe-EecCC
Confidence 999999999999988888877544 433 9999999999999 8999999 76654
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=9.1e-20 Score=159.42 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=119.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH--H-----Hhh--hcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LCQ--LFK 81 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~--~-----l~~--~~~ 81 (263)
.+....++.++++|+++||+||||||||||+|+|+|+. +|++|.|.++|+++. . ... .|.
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v 102 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-----------PATSGTVNLFGKMPGKVGYSAETVRQHIGFV 102 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEETTBCCC---CCHHHHHTTEEEE
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCCeEEEECCEEcccccCCHHHHcCcEEEE
Confidence 35678899999999999999999999999999999994 899999999987653 1 111 244
Q ss_pred CCCC---CCcceehhhhhccccCcc----c--ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------c
Q 024748 82 PKSA---VPAFLEIHDIAGLVRGAH----E--GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------S 140 (263)
Q Consensus 82 ~~~~---~~~~l~~~d~~g~~~~~~----~--~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~ 140 (263)
+|.. ++..+++.|++.+..... . .......+.+.++.++. ..+.+..+..+++ .
T Consensus 103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----SAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp CHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----GGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred EcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----hhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 5541 223468999887643211 0 01111222233333321 1111111222332 4
Q ss_pred CCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc--c-----chhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS--N-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~--~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
.+| +++++|||+...|+...+..++.+.+....+ . +|+++.+..+||++ .+|++|+++..++
T Consensus 178 ~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 178 GQP--QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI-LLLKDGQSIQQGA 246 (279)
T ss_dssp TCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEE-EEEETTEEEEEEE
T ss_pred CCC--CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 678 8999999999999999888888877764322 2 49999999999999 8999999887664
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.71 E-value=1.7e-19 Score=155.05 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=118.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hh--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (263)
.+....++.++++|+++||+|+||||||||+++|+|+. +|++|.|.++|.++.. +. ..|.+|
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q 90 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-----------IPENGQVLIDGHDLALADPNWLRRQVGVVLQ 90 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEEhhhCCHHHHHhcEEEEeC
Confidence 45788899999999999999999999999999999994 8999999999976532 11 125566
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc-------CCCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-------EDPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~-------~~~~~~~l~~------------~~~P~ 144 (263)
.......++.|++.+..... . ...+.+.++.+.. ...++.+ -+.....+++ ..+|
T Consensus 91 ~~~l~~~tv~enl~~~~~~~-~---~~~~~~~l~~~~l-~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p- 164 (247)
T 2ff7_A 91 DNVLLNRSIIDNISLANPGM-S---VEKVIYAAKLAGA-HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP- 164 (247)
T ss_dssp SCCCTTSBHHHHHTTTCTTC-C---HHHHHHHHHHHTC-HHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCccccccHHHHHhccCCCC-C---HHHHHHHHHHhCh-HHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC-
Confidence 52222469999998753211 1 1122222222211 0011111 0001112232 5678
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 205 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~ 205 (263)
+++++|||+...|+......++.+.+.. .+.+ |++..+. .||++ .+|.+|+++..|+
T Consensus 165 -~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 165 -KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NADRI-IVMEKGKIVEQGK 226 (247)
T ss_dssp -SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-TSSEE-EEEETTEEEEEEC
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 8999999999999999999888888774 3433 9988775 49999 8999999887765
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.71 E-value=1.6e-19 Score=152.06 Aligned_cols=160 Identities=13% Similarity=0.203 Sum_probs=110.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh--hhcCCCC-CCCc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPA 88 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~--~~~~~~~-~~~~ 88 (263)
+....++..+++|++++|+||||||||||+++|+|+. +|++|.|.++|+++.... ..|.+|. .++.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-----------KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 91 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEEGGGGGGGEEEECSSCCCCT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEhhhhcCcEEEEeCCCcCCC
Confidence 5678899999999999999999999999999999994 899999999997753111 1255554 3455
Q ss_pred ceehhhhhccccCccc-ccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhh
Q 024748 89 FLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELR 155 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~ 155 (263)
.+++.|++.+....+. ... ...+.+.++..+. ..+ +.....+++ ..+| +++++|||+.
T Consensus 92 ~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl-----~~~-~~~~~~LSgGqkqrv~laraL~~~p--~lllLDEPts 162 (214)
T 1sgw_A 92 KISVEDYLKAVASLYGVKVN-KNEIMDALESVEV-----LDL-KKKLGELSQGTIRRVQLASTLLVNA--EIYVLDDPVV 162 (214)
T ss_dssp TSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTC-----CCT-TSBGGGSCHHHHHHHHHHHHTTSCC--SEEEEESTTT
T ss_pred CCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCC-----CcC-CCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECCCc
Confidence 6899998876432111 111 2233333343331 111 221222332 5678 8999999999
Q ss_pred hccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHH
Q 024748 156 LKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRV 191 (263)
Q Consensus 156 ~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i 191 (263)
..|+...+...+.+.+....+. +|+...+..+|+++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999988888888877654333 39988888888887
No 36
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.71 E-value=9.1e-20 Score=157.01 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=119.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H-h--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-C--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l-~--~~~~~ 82 (263)
.+....++.++++|+++||+|+||||||||+++|+|+.. ..|++|.|.++|+++.. . . ..|.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~ 86 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDERARKGLFLAF 86 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence 356788999999999999999999999999999999710 27899999999976532 1 1 12455
Q ss_pred CC-CCCcceehhhhhccccCc-cc---c-cchHHHHHHHHhhhcceeEEeeccCCCceee-ecc------------cCCC
Q 024748 83 KS-AVPAFLEIHDIAGLVRGA-HE---G-QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIH-VDD------------SVDP 143 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~~-~~---~-~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~-l~~------------~~~P 143 (263)
|. .++..+++.|+..+.... .. . ......+.+.++..+.--...+ ..+.. +++ ..+|
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS----RYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG----SBTTCC----HHHHHHHHHHHHHCC
T ss_pred cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc----CCcccCCCHHHHHHHHHHHHHHcCC
Confidence 55 344568888887654211 00 0 0111122222332221000011 11112 332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHH-HHHHHHHhhcCCccccCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l-~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+..++.+.+....+.+ |+.+.+..+ ||++ .+|++|+++..++.
T Consensus 163 --~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v-~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 163 --TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKV-HVMMDGRVVATGGP 228 (250)
T ss_dssp --SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEE-EEEETTEEEEEESH
T ss_pred --CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEE-EEEECCEEEEEeCH
Confidence 899999999999999999988888877544433 999988888 5999 89999999877653
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.69 E-value=1.9e-19 Score=156.10 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=118.8
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----hhh-cCCCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQL-FKPKSA 85 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~~~-~~~~~~ 85 (263)
.+....++.+++ |++++|+|+||||||||+++|+|+ . |++|.|.++|+++... ... |.+|..
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~ 84 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAY 84 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGS
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCC
Confidence 356788999999 999999999999999999999999 7 9999999999765321 112 455553
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHH
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAE 153 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~ 153 (263)
.. .+++.|++.+....+. .....+.+.++..+.- ..+.+.....+++ ..+| +++++|||
T Consensus 85 ~l-~~tv~enl~~~~~~~~--~~~~~~~~~l~~~gl~----~~~~~~~~~~LSgGqkqRv~lAraL~~~p--~lllLDEP 155 (263)
T 2pjz_A 85 EI-GVTVNDIVYLYEELKG--LDRDLFLEMLKALKLG----EEILRRKLYKLSAGQSVLVRTSLALASQP--EIVGLDEP 155 (263)
T ss_dssp CT-TSBHHHHHHHHHHHTC--CCHHHHHHHHHHTTCC----GGGGGSBGGGSCHHHHHHHHHHHHHHTCC--SEEEEECT
T ss_pred cc-CCcHHHHHHHhhhhcc--hHHHHHHHHHHHcCCC----hhHhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECC
Confidence 33 6788888876432111 1112222333333210 0000111112222 4678 89999999
Q ss_pred hhhccHHHHHHHHHHHHHHhh--hccchhHHHHHHHHH-HHHHHhhcCCccccCCC
Q 024748 154 LRLKDIEFMERRIEDVEKSMK--RSNDKQLKIEHELCQ-RVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 154 ~~~~d~~~~~k~~~~~~~~~~--~~~~h~~~~i~~l~d-~i~~~L~~G~~~~~g~~ 206 (263)
+...|+...+...+.+.+... .-.+|+.+.+.++|| ++ .+|++|+++..++.
T Consensus 156 ts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i-~~l~~G~i~~~g~~ 210 (263)
T 2pjz_A 156 FENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKA-YFLVGNRLQGPISV 210 (263)
T ss_dssp TTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEE-EEEETTEEEEEEEH
T ss_pred ccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceE-EEEECCEEEEecCH
Confidence 999999999988888877643 012399999999999 99 89999998877653
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.68 E-value=6.6e-19 Score=153.03 Aligned_cols=181 Identities=14% Similarity=0.061 Sum_probs=120.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----H-h--hhcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-C--QLFKP 82 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l-~--~~~~~ 82 (263)
.+....++.++++|+++||+|+||||||||+|+|+|+.. ..|++|.|.++|+++.. . . ..|.+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 103 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 103 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEEC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEc
Confidence 356788999999999999999999999999999999820 15889999999986532 1 1 12455
Q ss_pred CC-CCCcceehhhhhccccC-c---cc-----ccchHHHHHHHHhhhcceeEEeeccCCCcee-eecc------------
Q 024748 83 KS-AVPAFLEIHDIAGLVRG-A---HE-----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDII-HVDD------------ 139 (263)
Q Consensus 83 ~~-~~~~~l~~~d~~g~~~~-~---~~-----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~-~l~~------------ 139 (263)
|. .++..+++.++..+... . .. .......+.+.++..+.- ..+.+..+. .+++
T Consensus 104 Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 104 QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP----EDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp SSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC----TTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred cCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC----hhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 54 34456777777654320 0 00 000111222233332210 001111111 1333
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHH-HHHHHHHhhcCCccccCCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l-~d~i~~~L~~G~~~~~g~~~ 207 (263)
..+| +++++|||+...|+...+..++.+.+....+.+ |+...+..+ ||++ .+|++|+++..++..
T Consensus 180 ~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v-~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 180 VLEP--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHCC--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEE-EEEETTEEEEEECTT
T ss_pred HhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEE-EEEECCEEEEEcCHH
Confidence 4678 899999999999999999988888776543433 999888776 8999 899999998877654
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.68 E-value=8.1e-18 Score=161.06 Aligned_cols=177 Identities=11% Similarity=0.106 Sum_probs=122.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (263)
.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|.++.... -.|.||
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-----------DVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 46788899999999999999999999999999999995 899999999998765321 126666
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcc---eeEEeeccCC---Cceeeecc------------cCCCch
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG---IFHVLRAFED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~---~l~vv~~~~~---~~~~~l~~------------~~~P~~ 145 (263)
.......++.|++.++...... ..++.+.++.++. +-..-+.++. .....+++ ..+|
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p-- 499 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAEGEYT---REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA-- 499 (582)
T ss_pred CCccccccHHHHHhccCCCCCC---HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC--
Confidence 6333346999999876411111 1223333333321 1000001100 01112332 4678
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...+...+.+.+... +.+ |+.+.+. .||++ .+|++|+++..|+.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIE-QADEI-LVVDEGEIIERGRH 562 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-hCCEE-EEEECCEEEEECCH
Confidence 89999999999999998888887777643 443 9998875 69999 99999999887754
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.65 E-value=2.2e-18 Score=149.13 Aligned_cols=174 Identities=15% Similarity=0.119 Sum_probs=117.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----h--hhcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (263)
.+....++.++++|+++||+|+||||||||+++|+|+. +| .|.|.++|.++... . ..|.+|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 100 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-----------DA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-----------CC-EEEEEETTEEGGGBCHHHHHTTEEEECS
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-----------CC-CeEEEECCEEhhhcCHHHHhccEEEEcC
Confidence 45788899999999999999999999999999999994 56 79999999876421 1 125566
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-------CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-------DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-------~~~~~~l~~------------~~~P~ 144 (263)
.......++.|++.+..... . ...+.+.++.++. ...++... +.....+++ ..+|
T Consensus 101 ~~~l~~~tv~enl~~~~~~~-~---~~~~~~~l~~~~l-~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p- 174 (260)
T 2ghi_A 101 DTILFNETIKYNILYGKLDA-T---DEEVIKATKSAQL-YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP- 174 (260)
T ss_dssp SCCCCSEEHHHHHHTTCTTC-C---HHHHHHHHHHTTC-HHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC-
T ss_pred CCcccccCHHHHHhccCCCC-C---HHHHHHHHHHhCC-HHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC-
Confidence 53223469999987753211 1 1222222222221 01110000 001112222 4677
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+.......+.+.+... +.+ |+...+. .||++ .+|++|+++..++.
T Consensus 175 -~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 237 (260)
T 2ghi_A 175 -KIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAESI-ILLNKGKIVEKGTH 237 (260)
T ss_dssp -SEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCSEE-EEEETTEEEEEECH
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCCEE-EEEECCEEEEECCH
Confidence 89999999999999998888888877653 333 9988775 59999 89999998877653
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.65 E-value=1.3e-18 Score=148.71 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=113.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|+++||+|+||||||||+++|+|+. +|++|.|.++|. ++ |.+|......+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~~g~----i~--~v~Q~~~~~~~ 80 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-----------DKVEGHVAIKGS----VA--YVPQQAWIQND 80 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-----------EEEEEEEEECSC----EE--EECSSCCCCSE
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCE----EE--EEcCCCcCCCc
Confidence 56788999999999999999999999999999999994 899999999883 33 44444334578
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-------CCceeeecc------------cCCCchhHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-------DPDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-------~~~~~~l~~------------~~~P~~~i~ild 151 (263)
++.|++.+...... .....+.+.+...+ .++... +.....+++ ..+| +++++|
T Consensus 81 tv~enl~~~~~~~~--~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p--~lllLD 152 (237)
T 2cbz_A 81 SLRENILFGCQLEE--PYYRSVIQACALLP----DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA--DIYLFD 152 (237)
T ss_dssp EHHHHHHTTSCCCT--THHHHHHHHTTCHH----HHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC--SEEEEE
T ss_pred CHHHHhhCccccCH--HHHHHHHHHHhhHH----HHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEe
Confidence 99999987543221 11122222111110 011000 011112222 4567 899999
Q ss_pred HHhhhccHHHHHHHHHHHH---HHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDVE---KSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~~---~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|+......++.+. +.. .+. +|+.+.+. .||++ .+|++|+++..++.
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v-~~l~~G~i~~~g~~ 212 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVI-IVMSGGKISEMGSY 212 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEE-EEEETTEEEEEECH
T ss_pred CcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEE-EEEeCCEEEEeCCH
Confidence 9999999998888777663 222 233 39888764 69999 89999998876653
No 42
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.64 E-value=3.3e-18 Score=145.38 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=111.1
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
+.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|. ++ |.||......
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~----i~--~v~q~~~~~~ 82 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-----------EPSEGKIKHSGR----IS--FCSQFSWIMP 82 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEECSC----EE--EECSSCCCCS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------cCCccEEEECCE----EE--EEecCCcccC
Confidence 356788999999999999999999999999999999994 899999999883 23 4444422223
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-------Cceeeecc------------cCCCchhHHHH
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-------PDIIHVDD------------SVDPVRDLEVI 150 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-------~~~~~l~~------------~~~P~~~i~il 150 (263)
.++.|++.+...... ....+.++.++. ...++.+.. .....+++ ..+| +++++
T Consensus 83 ~tv~enl~~~~~~~~-----~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lllL 154 (229)
T 2pze_A 83 GTIKENIIFGVSYDE-----YRYRSVIKACQL-EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA--DLYLL 154 (229)
T ss_dssp BCHHHHHHTTSCCCH-----HHHHHHHHHTTC-HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC--SEEEE
T ss_pred CCHHHHhhccCCcCh-----HHHHHHHHHhCc-HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 489999877532111 111111111110 011111100 00112222 4678 89999
Q ss_pred HHHhhhccHHHHHHHHHHH-HHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 151 SAELRLKDIEFMERRIEDV-EKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 151 de~~~~~d~~~~~k~~~~~-~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
|||+...|+...+...+.+ .+.. .+. +|+.+.+. .||++ .+|++|+++..++.
T Consensus 155 DEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 155 DSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKI-LILHEGSSYFYGTF 213 (229)
T ss_dssp ESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEE-EEEETTEEEEEECH
T ss_pred ECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEE-EEEECCEEEEECCH
Confidence 9999999999888877643 3332 233 39988875 59999 89999998877653
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.64 E-value=4.6e-18 Score=154.89 Aligned_cols=175 Identities=11% Similarity=0.103 Sum_probs=116.6
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~ 82 (263)
..++...++..|++|++++|+||||||||||+|+|+|+. . ++|.|.++|+++..+ .. .|.+
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~ 100 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-----------N-TEGEIQIDGVSWDSITLEQWRKAFGVIP 100 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-----------E-EEEEEEESSCBTTSSCHHHHHHTEEEES
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-----------C-CCeEEEECCEECCcCChHHHhCCEEEEc
Confidence 356788999999999999999999999999999999994 4 789999999876321 11 2455
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCC-c------eeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP-D------IIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~-~------~~~l~~------------~~~P 143 (263)
|......+++.|++.+..... ...+.+.++.+..- ..++.+-.. + ...+++ ..+|
T Consensus 101 Q~~~lf~~tv~enl~~~~~~~-----~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 101 QKVFIFSGTFRKNLDPNAAHS-----DQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp CCCCCCSEEHHHHHCTTCCSC-----HHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCcccCccCHHHHhhhccccC-----HHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 553223479999987543221 12222222322210 011111000 0 001332 4678
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+..+|+.......+.+++.. .+.+ |+.+.+ ..||+| .+|++|+++..|+..
T Consensus 175 --~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~aDri-~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 175 --KILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQF-LVIEENKVRQYDSIL 238 (390)
T ss_dssp --CEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTCSEE-EEEETTEEEEESSHH
T ss_pred --CEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhCCEE-EEEECCEEEEECCHH
Confidence 8999999999999998888777776543 2333 887654 569999 999999998887643
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=8.5e-18 Score=161.39 Aligned_cols=177 Identities=12% Similarity=0.160 Sum_probs=123.1
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (263)
+.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|.++..+. -.|.|
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-----------DVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-----------CCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-----------CCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 356788999999999999999999999999999999995 899999999998775321 12666
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc------eeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD------IIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~------~~~l~~------------~~~P 143 (263)
|.......++.|++.++....... ...+.++.+..- ..++.+.+ .+ ...+++ ..+|
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDE----EIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTT----HHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred CCCccccccHHHHHhcCCCCCCHH----HHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 664434569999998764322221 122222222110 01111100 00 011222 3567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.. .+.| |+.+.+.. ||+| .+|++|+++..|+.+
T Consensus 511 --~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 511 --KILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLI-IVLRDGEIVEMGKHD 574 (598)
T ss_dssp --SEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEE-EEECSSSEEECSCHH
T ss_pred --CEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCHH
Confidence 8999999999999998888777777764 3443 99998865 9999 999999999888643
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.63 E-value=1.1e-17 Score=160.65 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=122.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS 84 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~~ 84 (263)
+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|+++.. +.. .|.||.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----------~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~ 426 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-----------DPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-----------CCSEEEEEETTEETTTBCHHHHHHSEEEECSS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCcEEEECCEEhhhCCHHHHHhceEEEccC
Confidence 4677889999999999999999999999999999995 8999999999987642 111 256666
Q ss_pred CCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----CC---Cceeeecc------------cCCCch
Q 024748 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----ED---PDIIHVDD------------SVDPVR 145 (263)
Q Consensus 85 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~~---~~~~~l~~------------~~~P~~ 145 (263)
......++.|++.++....... ...++.+.++.+..- ..++.+ +. .....+++ ..+|
T Consensus 427 ~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p-- 502 (595)
T 2yl4_A 427 PILFSCSIAENIAYGADDPSSV-TAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP-- 502 (595)
T ss_dssp CCCCSSBHHHHHHTTSSSTTTS-CHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC--
T ss_pred CcccCCCHHHHHhhcCCCcccc-CHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC--
Confidence 3333469999998865331100 112233333333210 011111 00 00112332 4567
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+...+...+.+.+... +.+ |+.+.+. .||++ .+|++|+++..|+.+
T Consensus 503 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 503 KILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMV-AVLDQGKITEYGKHE 566 (595)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEE-EEEETTEEEEEECSC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEE-EEEECCEEEEECCHH
Confidence 89999999999999988888887777653 333 9998875 59999 999999998877655
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=1.1e-17 Score=160.23 Aligned_cols=177 Identities=14% Similarity=0.192 Sum_probs=123.9
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~ 82 (263)
+.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|.++..+ .. .|.|
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-----------~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 423 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-----------DPERGRVEVDELDVRTVKLKDLRGHISAVP 423 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-----------CCSEEEEEESSSBGGGBCHHHHHHHEEEEC
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-----------cCCCcEEEECCEEcccCCHHHHHhheEEEC
Confidence 356778899999999999999999999999999999995 89999999999877532 11 2667
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----C---CCceeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----E---DPDIIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~---~~~~~~l~~------------~~~P 143 (263)
|.......++.|++.+....... .+..+.++.+... ..+..+ + ......+++ ..+|
T Consensus 424 Q~~~lf~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~-~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 424 QETVLFSGTIKENLKWGREDATD----DEIVEAAKIAQIH-DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp SSCCCCSEEHHHHHTTTCSSCCH----HHHHHHHHHTTCH-HHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred CCCcCcCccHHHHHhccCCCCCH----HHHHHHHHHhCcH-HHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 76443456999999876543221 1222222222210 011111 0 000112232 4677
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+...++..+.+.+.. .+.| |+.+.+. .||++ .+|++|+++..|+.+
T Consensus 499 --~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i-~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 499 --KVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKI-LVLHEGKVAGFGTHK 562 (587)
T ss_dssp --SEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEE-EEEETTEEEEEECHH
T ss_pred --CEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEE-EEEECCEEEEECCHH
Confidence 8999999999999998888888777654 3443 9999875 89999 999999999888643
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.62 E-value=9.8e-18 Score=160.48 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=121.5
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (263)
.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|.++.. +.. .|.||
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-----------DIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-----------CCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-----------CCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 45677889999999999999999999999999999995 8999999999987642 111 26666
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----C---CCceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----E---DPDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~---~~~~~~l~~------------~~~P~ 144 (263)
.......++.|++.+....... ..++.+.++.++.- ..++.+ + ......+++ ..+|
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~---~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p- 499 (582)
T 3b60_A 425 NVHLFNDTVANNIAYARTEEYS---REQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS- 499 (582)
T ss_dssp SCCCCSSBHHHHHHTTTTSCCC---HHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC-
T ss_pred CCcCCCCCHHHHHhccCCCCCC---HHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC-
Confidence 6333346999999886411111 12233333333210 111111 0 001112332 4567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
+++++|||+...|+...++..+.+.+... +.+ |+.+.+. .||++ .+|++|+++..|+.
T Consensus 500 -~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 500 -PILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEI-VVVEDGIIVERGTH 562 (582)
T ss_dssp -SEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEE-EEEETTEEEEEECH
T ss_pred -CEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEE-EEEECCEEEEecCH
Confidence 89999999999999998888888877653 433 9988775 69999 99999999877753
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.61 E-value=6.8e-18 Score=161.46 Aligned_cols=177 Identities=13% Similarity=0.175 Sum_probs=122.0
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-------hhcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (263)
+.+....++.++++|+++||+||||||||||+++|+|+. +|++|.|.++|.++.... -.|.|
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-----------DVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-----------CCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-----------CCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 356778899999999999999999999999999999995 899999999998765321 12666
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-------Cceeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-------PDIIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-------~~~~~l~~------------~~~P 143 (263)
|.......++.|++.++...... ....+.++.+... ..++.+.+ .....+++ ..+|
T Consensus 422 Q~~~l~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 422 QDNILFSDTVKENILLGRPTATD----EEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp SSCCCCSSBHHHHHGGGCSSCCH----HHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCccCcccHHHHHhcCCCCCCH----HHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 66333345999999886543221 2222333332210 00111100 00011222 3567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+.......+.+.+.. .+.| |+++.+.. ||++ .+|++|+++..|+.+
T Consensus 497 --~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 497 --PILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKI-VVIENGHIVETGTHR 560 (578)
T ss_dssp --SEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEE-EEEETTEEEEEECHH
T ss_pred --CEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCHH
Confidence 8999999999999998777777776654 3333 99998864 9999 999999999888643
No 49
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=2.8e-16 Score=139.01 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeC-CcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
-+|+|+|++|||||||+|.|+|...++ ++++++|+....|..... + .++.++||||+....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCCccc
Confidence 489999999999999999999998875 899999999888887765 3 368999999998654
Q ss_pred --cc-ccchHHHHHHHHhhhcceeEEeeccCCCc-----e--eeecccCCCchhHHHHHHHhhhc-cHHHHHHHHHHHHH
Q 024748 103 --HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----I--IHVDDSVDPVRDLEVISAELRLK-DIEFMERRIEDVEK 171 (263)
Q Consensus 103 --~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~--~~l~~~~~P~~~i~ilde~~~~~-d~~~~~k~~~~~~~ 171 (263)
.. +..+.......++.+|+++.++++.+... + ..+.....|. +.+++. .+.. +........+.+.+
T Consensus 74 ~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv--ilV~NK-~Dl~~~~~~~~~~~~~l~~ 150 (308)
T 3iev_A 74 KSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV--IVVINK-IDKIGPAKNVLPLIDEIHK 150 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE--EEEEEC-GGGSSSGGGGHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE--EEEEEC-ccCCCCHHHHHHHHHHHHH
Confidence 11 23344455667889999999999864321 0 0111111221 111111 1111 11111222233332
Q ss_pred Hhh-h-----ccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHH-----HHHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 172 SMK-R-----SNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 172 ~~~-~-----~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~-----~e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
... . -++....++.++.+.+...++++...++ +.+++.+ .|++|+. .....+++||++.+..+.+++
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~ 230 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKP 230 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEE
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEE
Confidence 221 0 1126677888999999999999988776 3444443 2678887 666789999999988877764
No 50
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.59 E-value=1.6e-16 Score=145.71 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=113.7
Q ss_pred CCCcCCcccccCCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC
Q 024748 11 APAERPILGRFSSHL--------------------KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~--------------------~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g 70 (263)
..+...++..++.|+ ++||+|+||||||||+|+|+|+. .|+.|.|.++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-----------~p~~GsI~~~g 104 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-----------NEEEGAAKTGV 104 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-----------TTSTTSCCCCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-----------CccCceEEECC
Confidence 345667888899999 99999999999999999999994 88999999888
Q ss_pred cchHHHhhhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHh--hhcceeEEeeccC-CC-cee---eecc----
Q 024748 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIR--AVDGIFHVLRAFE-DP-DII---HVDD---- 139 (263)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~--~~d~~l~vv~~~~-~~-~~~---~l~~---- 139 (263)
.+..+.+.+++ ...+.++++.|+++++... .....+++.+. ..+..+. ++.-. .. ++. .+..
T Consensus 105 ~~~t~~~~v~q--~~~~~~ltv~D~~g~~~~~----~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p 177 (413)
T 1tq4_A 105 VEVTMERHPYK--HPNIPNVVFWDLPGIGSTN----FPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKE 177 (413)
T ss_dssp ----CCCEEEE--CSSCTTEEEEECCCGGGSS----CCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCE
T ss_pred eecceeEEecc--ccccCCeeehHhhcccchH----HHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCC
Confidence 65533222333 3334579999999987532 12234444332 2232222 22210 11 110 0000
Q ss_pred ----cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHh-----hhc---------cchhHHH--HHHHHHHHHHHhhcCC
Q 024748 140 ----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM-----KRS---------NDKQLKI--EHELCQRVKAWLQDGK 199 (263)
Q Consensus 140 ----~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~-----~~~---------~~h~~~~--i~~l~d~i~~~L~~G~ 199 (263)
..+| +++++|||+...|+...++.++.+.+.. ..+ ++|...+ ++++|+++...|++|+
T Consensus 178 ~~lV~tkp--dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 178 FYFVRTKV--DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp EEEEECCH--HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred eEEEEecC--cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1256 8999999999999887777776666653 111 2377776 9999999999999998
Q ss_pred cccc
Q 024748 200 DVRL 203 (263)
Q Consensus 200 ~~~~ 203 (263)
..+.
T Consensus 256 ~~~~ 259 (413)
T 1tq4_A 256 RHNF 259 (413)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7663
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.57 E-value=4.4e-17 Score=143.11 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=107.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.+....++.++++|++++|+|+||||||||+++|+|+. +|++|.|.++|. ++ |.||.......
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~g~----i~--~v~Q~~~l~~~ 113 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-----------EPSEGKIKHSGR----IS--FCSQNSWIMPG 113 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-----------CEEEEEEECCSC----EE--EECSSCCCCSS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCCcEEEECCE----EE--EEeCCCccCcc
Confidence 45778889999999999999999999999999999994 899999999883 33 44444222234
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-------Cceeeecc------------cCCCchhHHHHH
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-------PDIIHVDD------------SVDPVRDLEVIS 151 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-------~~~~~l~~------------~~~P~~~i~ild 151 (263)
++.|++. .... .. ......++..+. ...++.+.. .....+++ ..+| +++++|
T Consensus 114 tv~enl~-~~~~--~~---~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p--~lllLD 184 (290)
T 2bbs_A 114 TIKENII-GVSY--DE---YRYRSVIKACQL-EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA--DLYLLD 184 (290)
T ss_dssp BHHHHHH-TTCC--CH---HHHHHHHHHTTC-HHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC--SEEEEE
T ss_pred cHHHHhh-Cccc--ch---HHHHHHHHHhCh-HHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC--CEEEEE
Confidence 8888876 2211 10 011111111110 000111100 00112222 4678 899999
Q ss_pred HHhhhccHHHHHHHHHHH-HHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCccccCCC
Q 024748 152 AELRLKDIEFMERRIEDV-EKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (263)
Q Consensus 152 e~~~~~d~~~~~k~~~~~-~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~~~g~~ 206 (263)
||+...|+......++.+ .+.. .+. +|+...+. .||++ .+|++|+++..|+.
T Consensus 185 EPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i-~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 185 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKI-LILHEGSSYFYGTF 242 (290)
T ss_dssp STTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEE-EEEETTEEEEEECH
T ss_pred CCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEE-EEEECCeEEEeCCH
Confidence 999999999888876643 2322 233 39998875 69999 89999998877654
No 52
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=1.7e-15 Score=133.73 Aligned_cols=192 Identities=19% Similarity=0.166 Sum_probs=121.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+++|+|++|||||||+|.|+|...++ ++.|++|+....|.+...+ .++.++||||+......
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~~ 71 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMDA 71 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhhH
Confidence 69999999999999999999998875 7889999887777655433 36899999999864432
Q ss_pred -ccchHHHHHHHHhhhcceeEEeeccCCCc-----ee-eeccc--CCCchhHHHHHHHhhhccHHH-HHHHHHHHHH---
Q 024748 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDS--VDPVRDLEVISAELRLKDIEF-MERRIEDVEK--- 171 (263)
Q Consensus 105 -~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~-~l~~~--~~P~~~i~ilde~~~~~d~~~-~~k~~~~~~~--- 171 (263)
...+...+...++.+|+++.++|+.+... +. .+... ..|. +.+++. .++.+... +.+....+..
T Consensus 72 l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~--ilV~NK-~Dl~~~~~~~~~~~~~~~~~~~ 148 (301)
T 1wf3_A 72 LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI--LLVGNK-LDAAKYPEEAMKAYHELLPEAE 148 (301)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE--EEEEEC-GGGCSSHHHHHHHHHHTSTTSE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE--EEEEEC-cccCCchHHHHHHHHHhcCcCc
Confidence 12233445667789999999999864321 10 11111 1221 122111 11111111 1111111100
Q ss_pred HhhhccchhHHHHHHHHHHHHHHhhcCCcccc-CCC-CHHH-----HHHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 172 SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDW-KAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 172 ~~~~~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~-~d~~-----~e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
.... ++....++..+.+.+...+++|..+|+ +.+ +|.+ .+++|+. .....+++||++.+..+.++.
T Consensus 149 ~~~i-SA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~ 222 (301)
T 1wf3_A 149 PRML-SALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAE 222 (301)
T ss_dssp EEEC-CTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEE
T ss_pred EEEE-eCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEe
Confidence 0111 136778999999999888888887775 444 4433 2677777 555688999999888887764
No 53
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.52 E-value=3.8e-16 Score=137.77 Aligned_cols=193 Identities=16% Similarity=0.106 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc-cCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV-RGA 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~-~~~ 102 (263)
.+++|+|+||||||||+|.|+|...++ ++.|++|+....|.+...+ .++.++||+|+. ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccch
Confidence 489999999999999999999998765 7889999887777665543 368899999986 221
Q ss_pred cc-ccchHHHHHHHHhhhcceeEEeeccCCCc-----ee-eecccCCCchhHHHHHHHhhhcc-HHHHHHHHHHHHHHhh
Q 024748 103 HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDSVDPVRDLEVISAELRLKD-IEFMERRIEDVEKSMK 174 (263)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~d~~l~vv~~~~~~~-----~~-~l~~~~~P~~~i~ilde~~~~~d-~~~~~k~~~~~~~~~~ 174 (263)
.. ...+.......++.+|.++.++++.+ .. +. .+.....| .+.+++. ++... .....+.+..+.+...
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P--~ilvlNK-~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP--VILAVNK-VDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC--EEEEEES-TTTCCCHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC--EEEEEEC-cccCccHHHHHHHHHHHHHhcC
Confidence 10 00111122345678899999998743 21 00 11111233 2222221 11111 1212222222222111
Q ss_pred h-----ccchhHHHHHHHHHHHHHHhhcCCcccc-CCCCHHH-----HHHHhhh-hhhhcCCeEEEEEcchhhhhc
Q 024748 175 R-----SNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (263)
Q Consensus 175 ~-----~~~h~~~~i~~l~d~i~~~L~~G~~~~~-g~~~d~~-----~e~ir~~-~~~~~k~i~~~~nv~~~~~~~ 238 (263)
. -++|++.++..+++.+...++++..+|+ +..++.+ .+++|+. .....+++||.+.+..+.+.+
T Consensus 148 ~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~ 223 (301)
T 1ega_A 148 FLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVS 223 (301)
T ss_dssp CSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEEC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEe
Confidence 0 1238888999999999888988887776 3444443 2567777 556688999999888777653
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.52 E-value=7.4e-16 Score=145.96 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=103.3
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCC-Ccceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV-PAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~-~~~l~~~d~~g 97 (263)
+.+.+|+++||+|+||||||||+++|+|+ .+|++|.|.+.+..+. |.|+... ....++.+++.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~-----~~~q~~~~~~~~tv~~~l~ 352 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILS-----YKPQRIFPNYDGTVQQYLE 352 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEE-----EECSSCCCCCSSBHHHHHH
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeE-----eechhcccccCCCHHHHHH
Confidence 34689999999999999999999999999 4899999998776543 3344321 23466777665
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHH
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 165 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~ 165 (263)
+........ ....+.+.++..+. ..+.+..+..+++ +.+| +++++|||+...|+......
T Consensus 353 ~~~~~~~~~-~~~~~~~~l~~~~l-----~~~~~~~~~~LSGGq~QRv~iAraL~~~p--~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 353 NASKDALST-SSWFFEEVTKRLNL-----HRLLESNVNDLSGGELQKLYIAATLAKEA--DLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp HHCSSTTCT-TSHHHHHTTTTTTG-----GGCTTSBGGGCCHHHHHHHHHHHHHHSCC--SEEEEESTTTTCCHHHHHHH
T ss_pred Hhhhhccch-hHHHHHHHHHHcCC-----HHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHH
Confidence 432211000 01111122222211 1111222223343 4678 89999999999999998888
Q ss_pred HHHHHHHhhh-ccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 166 IEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 166 ~~~~~~~~~~-~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
.+.+.++... +.+ |++..+..+|||+ .+|..+.
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri-~vl~~~~ 463 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIADRI-IVFKGEP 463 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEEEET
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 8888877543 333 9999999999999 8887643
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=3.7e-16 Score=161.28 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=122.3
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK 83 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~~ 83 (263)
.+....++.++++|+++||+|+||||||||+++|+|++ +|++|.|.++|.++..+ .. .|.||
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-----------~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-----------DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-----------CCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 46788999999999999999999999999999999995 89999999999876432 11 26667
Q ss_pred CCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc----CC---Cceeeecc------------cCCCc
Q 024748 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF----ED---PDIIHVDD------------SVDPV 144 (263)
Q Consensus 84 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~----~~---~~~~~l~~------------~~~P~ 144 (263)
.......++.|++.+....... ......+.++.+..- ..++.+ +. ..-..+++ ..+|
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~--~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p- 1190 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVV--SYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP- 1190 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCC--CHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC-
T ss_pred CCccccccHHHHHhccCCCCCC--CHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC-
Confidence 6444567999999876543211 112222222322210 011111 10 00112332 3567
Q ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 145 ~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|+...+...+.+.+.. .+.| |+++.+.. ||+| .+|++|+++..|+..
T Consensus 1191 -~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~-~dri-~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1191 -HILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQN-ADLI-VVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp -SSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGS-CSEE-EEEETBEEEEEECHH
T ss_pred -CEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCHH
Confidence 8999999999999998777667666543 3433 99998855 9999 999999998887643
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=1.1e-15 Score=157.72 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=120.9
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH-----hh--hcCC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKP 82 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l-----~~--~~~~ 82 (263)
+.+....++.++++|+++||+|+||||||||+++|+|++ +|+.|.|.++|.++..+ .. .+.+
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-----------~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-----------DPLDGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-----------CCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEEHHhCCHHHHHhheEEEc
Confidence 346788899999999999999999999999999999995 89999999999876432 11 2666
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-------Cceeeecc------------cCCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-------PDIIHVDD------------SVDP 143 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-------~~~~~l~~------------~~~P 143 (263)
|......-++.|++.++...... ....+.++.+..- ..+..+.+ .....+++ ..+|
T Consensus 471 Q~~~l~~~ti~eNi~~g~~~~~~----~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 471 QEPVLFATTIAENIRYGREDVTM----DEIEKAVKEANAY-DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp SSCCCCSSCHHHHHHHHCSSCCH----HHHHHHHHHTTCH-HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCccCCccHHHHHhcCCCCCCH----HHHHHHHHHhCcH-HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 66443456999999877543221 2222222222210 00111100 00112332 3567
Q ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 144 ~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
+++++|||+...|........+.+.+.. .+.| |.+..+.. ||+| .+|++|+++..|+.+
T Consensus 546 --~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~-~d~i-~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 546 --KILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN-ADVI-AGFDGGVIVEQGNHD 609 (1284)
T ss_dssp --SEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT-CSEE-EECSSSCCCCEECHH
T ss_pred --CEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCHH
Confidence 8999999999999987665555555443 3443 99999866 9999 999999998887643
No 57
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.49 E-value=6.4e-15 Score=135.28 Aligned_cols=104 Identities=35% Similarity=0.588 Sum_probs=87.8
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
+.+..+.++..++.|..++|||+||||||||+|+|+|....+++++++|+.|+.|.+.+++. ..
T Consensus 143 ~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~ 206 (416)
T 1udx_A 143 EEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ER 206 (416)
T ss_dssp CCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CE
T ss_pred CCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ce
Confidence 34567889999999999999999999999999999999877789999999999999887641 25
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
+++.|++++....+....+...++..++.++.+++++++.
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc
Confidence 7899999998765554455667777788899999999985
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.49 E-value=4.6e-16 Score=160.93 Aligned_cols=180 Identities=11% Similarity=0.087 Sum_probs=124.8
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHh-----h--hcC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFK 81 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~-----~--~~~ 81 (263)
.+.|..+.++.+|++|+++||||++|||||||+++|+|++ +|++|.|.++|.++..+. . .+.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-----------~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-----------DTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-----------CCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-----------cCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 3567888999999999999999999999999999999995 999999999998875432 2 277
Q ss_pred CCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC-CCc--e----eeecc------------cCC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE-DPD--I----IHVDD------------SVD 142 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~-~~~--~----~~l~~------------~~~ 142 (263)
||...-+.-++.||+.++..... .-..++.++++.+.+- ..+..+. ..+ + ..+++ ..+
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~--~sd~ei~~Al~~a~l~-~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~ 1235 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSS--VTMAQVEEAARLANIH-NFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTT--SCHHHHHHHHHHTTCH-HHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCEeeCccHHHHHhccCCCCC--CCHHHHHHHHHHhCCh-HHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhC
Confidence 88866667899999987643221 1123444555554321 1111110 000 0 01222 246
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
| +++++||++...|.+.-+...+.+.+.. .+.| |.+..+ .-||+| .+|++|+++..|+..
T Consensus 1236 ~--~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi-~~aD~I-~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1236 P--KILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTV-MNADCI-AVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp C--SEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTT-TTCSEE-EEESSSSEEEEECHH
T ss_pred C--CEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHH-HhCCEE-EEEECCEEEEECCHH
Confidence 6 7999999999999887555445454433 3333 887776 459999 999999999888654
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.47 E-value=1.8e-15 Score=145.18 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=104.0
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCcceehhhhhc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHDIAG 97 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~~l~~~d~~g 97 (263)
+.+.+|+++||+|+||||||||+++|+|+. +|+.|.|.+. .. ++ |.||. ..+..+++.+++.
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~~-~~---i~--~v~Q~~~~~~~~tv~e~~~ 439 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-----------EPTEGKVEWD-LT---VA--YKPQYIKAEYEGTVYELLS 439 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSBSCCCCC-CC---EE--EECSSCCCCCSSBHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEEe-eE---EE--EEecCccCCCCCcHHHHHH
Confidence 346789999999999999999999999994 8899998762 11 22 44444 2234567777654
Q ss_pred cc-cCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHH
Q 024748 98 LV-RGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMER 164 (263)
Q Consensus 98 ~~-~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k 164 (263)
.. ...... ...+.+.++..+. ..+.+..+..+++ +.+| +++++|||+...|+.....
T Consensus 440 ~~~~~~~~~---~~~~~~~l~~~~l-----~~~~~~~~~~LSGGe~QRv~iAraL~~~p--~lLlLDEPt~~LD~~~~~~ 509 (607)
T 3bk7_A 440 KIDSSKLNS---NFYKTELLKPLGI-----IDLYDRNVEDLSGGELQRVAIAATLLRDA--DIYLLDEPSAYLDVEQRLA 509 (607)
T ss_dssp HHHHHHHHC---HHHHHHTHHHHTC-----TTTTTSBGGGCCHHHHHHHHHHHHHTSCC--SEEEEECTTTTCCHHHHHH
T ss_pred hhhccCCCH---HHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCccCCCHHHHHH
Confidence 32 100000 1111222222221 1111222223443 5678 8999999999999999988
Q ss_pred HHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhc--CCccccCCCC
Q 024748 165 RIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWK 207 (263)
Q Consensus 165 ~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~--G~~~~~g~~~ 207 (263)
..+.+.++.. .+.+ |+...+..+||++ .+|.. |.+...|+..
T Consensus 510 l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 510 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-IVFEGEPGRHGRALPPM 559 (607)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCCE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEcCCcceEEecCCHH
Confidence 8888887653 2433 9999999999999 88875 5554556553
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.47 E-value=1.7e-15 Score=143.54 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=102.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCC-CCcceehhhhhcc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGL 98 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~l~~~d~~g~ 98 (263)
.+.+|+++||+|+||||||||+++|+|+. +|+.|.|.+. .. ++ |.||.. ....+++.+++..
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-----------~p~~G~i~~~-~~---i~--~v~Q~~~~~~~~tv~~~~~~ 370 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVE-----------EPTEGKIEWD-LT---VA--YKPQYIKADYEGTVYELLSK 370 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSS-----------CCSBCCCCCC-CC---EE--EECSSCCCCCSSBHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEEC-ce---EE--EEecCCcCCCCCcHHHHHHh
Confidence 35789999999999999999999999994 8899998762 11 22 344432 2235666665542
Q ss_pred ccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhccHHHHHHHH
Q 024748 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRI 166 (263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~d~~~~~k~~ 166 (263)
....... ....+.+.++..+. ..+.+..+..+++ +.+| +++++|||+...|+.......
T Consensus 371 ~~~~~~~--~~~~~~~~l~~~~l-----~~~~~~~~~~LSGGe~qrv~lAraL~~~p--~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 371 IDASKLN--SNFYKTELLKPLGI-----IDLYDREVNELSGGELQRVAIAATLLRDA--DIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHHHHHT--CHHHHHHTTTTTTC-----GGGTTSBGGGCCHHHHHHHHHHHHHTSCC--SEEEEECTTTTCCHHHHHHHH
T ss_pred hhccCCC--HHHHHHHHHHHcCC-----hhhhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCcccCCHHHHHHHH
Confidence 2000000 01111222222211 1111222223343 5678 899999999999999999888
Q ss_pred HHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhc--CCccccCCCC
Q 024748 167 EDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWK 207 (263)
Q Consensus 167 ~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~--G~~~~~g~~~ 207 (263)
+.+.++.. .+.+ |+...+..+||++ .+|.. |.+...|+..
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-MVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCCE
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceEeecCCHH
Confidence 88887653 3433 9999999999999 88875 5555556653
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.43 E-value=4.3e-15 Score=153.74 Aligned_cols=178 Identities=13% Similarity=0.202 Sum_probs=126.3
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH-----Hhh--hcC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFK 81 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~-----l~~--~~~ 81 (263)
.+.|....++.++++|+.++|||++|||||||+++|+|.+ +|+.|.|.++|.++.. +.. .|.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-----------~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-----------DVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-----------CCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-----------ccccCcccCCCccchhccHHHHhhccccc
Confidence 4577889999999999999999999999999999999995 9999999999987653 222 378
Q ss_pred CCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC-Cc--e----eeecc------------cCC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PD--I----IHVDD------------SVD 142 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~-~~--~----~~l~~------------~~~ 142 (263)
+|...-.+-++.||+.++..... .+++.++++.+.+- ..+..+.+ .+ + ..+++ ..+
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~----~~~v~~a~~~a~l~-~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGIT----REEMVAACKMANAE-KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCC----HHHHHHHHHHTTCH-HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred CCcceeeCCchhHHHhhhcccch----HHHHHHHHHHccch-hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 88866678999999998864322 23344444444321 01111111 00 1 12332 456
Q ss_pred CchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccccCCCC
Q 024748 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (263)
Q Consensus 143 P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~~g~~~ 207 (263)
| +++++||++...|...-....+.+.+.. +++| |....+ +.||+| .+|++|+++..|+.+
T Consensus 573 ~--~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i-~~aD~I-ivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 573 P--KILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTI-RNADLI-ISCKNGQVVEVGDHR 637 (1321)
T ss_dssp C--SEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTT-TTCSEE-EEEETTEEEEEECHH
T ss_pred C--CEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHH-HhCCEE-EEeeCCeeeccCCHH
Confidence 7 8999999999999876444445555544 3433 888866 569999 999999999888643
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.42 E-value=1e-14 Score=138.31 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcccee---------eeCCcchHHHh-hh---
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC-QL--- 79 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i---------~~~g~~~~~l~-~~--- 79 (263)
+...++ .+.+|+++||+|+||||||||+|+|+|+. .|+.|.+ .+.|..+.... ..
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-----------~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 104 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-----------IPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-----------CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTT
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCccCcchhhhHHhhCCccHHHHHHHHHHH
Confidence 566677 88999999999999999999999999994 7777874 34454433210 00
Q ss_pred -----cCCCCC--CCcc--eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----------
Q 024748 80 -----FKPKSA--VPAF--LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------- 139 (263)
Q Consensus 80 -----~~~~~~--~~~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------- 139 (263)
+.++.. .+.. .++.++.... ........+++ ..+. ....+..+..+++
T Consensus 105 ~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~~~~~~~~l~---~lgl-----~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKA----DETGKLEEVVK---ALEL-----ENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp SCCCEEECSCGGGSGGGCCSBHHHHHHHH----CSSSCHHHHHH---HTTC-----TTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhhccHHHHHhhh----hHHHHHHHHHH---HcCC-----ChhhhCChhhCCHHHHHHHHHHHH
Confidence 111110 0000 0111111100 00001111111 1110 0011111222332
Q ss_pred -cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 140 -~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
+.+| +++++|||+..+|+...+...+.++++...+.+ |++..+..+||++ .+|..+.
T Consensus 173 L~~~P--~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri-~vl~~~~ 235 (538)
T 1yqt_A 173 LLRNA--TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDII-HVVYGEP 235 (538)
T ss_dssp HHSCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEEEET
T ss_pred HhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEcCcc
Confidence 4678 899999999999999988888888877654443 9999999999999 7887654
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.4e-14 Score=137.10 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=48.6
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
+.+| +++++|||+..+|+.......+.++++.. +.+ |++..+..+||++ .+|..|...+
T Consensus 154 ~~~p--~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i-~vl~~~~~~~ 217 (538)
T 3ozx_A 154 LREA--DVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLI-HIIYGESSVY 217 (538)
T ss_dssp HSCC--SEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEE-EEEEEETTTE
T ss_pred HcCC--CEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEE-EEecCCcccc
Confidence 4678 89999999999999998888888887753 443 9999999999999 8887665443
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.7e-14 Score=138.35 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=50.0
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCCccc
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 202 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~~~~ 202 (263)
..+| +++++|||+..+|+.......+.++++...+.+ |++..+..+||++ .+|..++..+
T Consensus 237 ~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv-~vl~~~~~~~ 301 (608)
T 3j16_B 237 VQEA--DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFV-CIIYGVPSVY 301 (608)
T ss_dssp HSCC--SEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEE-EEEESCTTTE
T ss_pred HhCC--CEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcccc
Confidence 4678 899999999999999988888888877655544 9999999999999 8888766544
No 65
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.2e-14 Score=136.38 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=101.9
Q ss_pred CCcccccCCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC-CCCc
Q 024748 15 RPILGRFSSH-----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPA 88 (263)
Q Consensus 15 ~~~~~~i~~g-----~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-~~~~ 88 (263)
..++.++..| +++||+|+||||||||+++|+|+. +|+.|.. +... ...|.|+. ....
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-----------~p~~G~~-~~~~-----~i~~~~q~~~~~~ 426 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-----------KPDEGQD-IPKL-----NVSMKPQKIAPKF 426 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-----------CCSBCCC-CCSC-----CEEEECSSCCCCC
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-----------CCCCCcC-ccCC-----cEEEecccccccC
Confidence 3456666666 889999999999999999999995 7777753 1111 11233443 1122
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhh
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 156 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~ 156 (263)
..++.++.......... ......+.++..+. ..+.+..+..+++ +.+| +++++|||+.+
T Consensus 427 ~~tv~e~~~~~~~~~~~--~~~~~~~~l~~l~l-----~~~~~~~~~~LSGGqkQRv~iAraL~~~p--~lLlLDEPT~g 497 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFL--NPQFQTDVVKPLRI-----DDIIDQEVQHLSGGELQRVAIVLALGIPA--DIYLIDEPSAY 497 (608)
T ss_dssp CSBHHHHHHHHCSSTTT--SHHHHHHTHHHHTS-----TTTSSSBSSSCCHHHHHHHHHHHHTTSCC--SEEEECCTTTT
T ss_pred CccHHHHHHHHhhcccc--cHHHHHHHHHHcCC-----hhhhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECCCCC
Confidence 34555554321111000 01111122222221 1111112223333 5678 89999999999
Q ss_pred ccHHHHHHHHHHHHHHhh-hccc-----hhHHHHHHHHHHHHHHhhc--CCccccCCCC
Q 024748 157 KDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWK 207 (263)
Q Consensus 157 ~d~~~~~k~~~~~~~~~~-~~~~-----h~~~~i~~l~d~i~~~L~~--G~~~~~g~~~ 207 (263)
.|+.......+.+.++.. .+.+ |+++.+..+|||+ .+|+. |+++..|+..
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrv-ivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV-IVFEGIPSKNAHARAPE 555 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE-EECEEETTTEEECCCCE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCCCeEEecCChH
Confidence 999998888888877643 3443 9999999999999 78875 7777777654
No 66
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.40 E-value=2.6e-14 Score=137.13 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=97.0
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcccee---------eeCCcchHHHh-h----
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC-Q---- 78 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i---------~~~g~~~~~l~-~---- 78 (263)
....++ .+.+|+++||+|+||||||||+|+|+|+. .|+.|.+ .+.|..+.... .
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-----------~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 174 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-----------IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-----------CCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHT
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-----------CCCCCccccccchhhheeCCEehhhhhhhhhhh
Confidence 566677 88999999999999999999999999994 7888875 34454443210 0
Q ss_pred ----hcCCCCC--CCc--ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc-----------
Q 024748 79 ----LFKPKSA--VPA--FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD----------- 139 (263)
Q Consensus 79 ----~~~~~~~--~~~--~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~----------- 139 (263)
.+.++.. .+. ..++.+++... ........+++.+...+ +.+..+..+++
T Consensus 175 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~~~~~~~~L~~lgL~~--------~~~~~~~~LSGGekQRvaIAra 242 (607)
T 3bk7_A 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKV----DEVGKFEEVVKELELEN--------VLDRELHQLSGGELQRVAIAAA 242 (607)
T ss_dssp SCCCEEECSCGGGGGGTCCSBHHHHHHHT----CCSSCHHHHHHHTTCTT--------GGGSBGGGCCHHHHHHHHHHHH
T ss_pred hcceEEeechhhhchhhccccHHHHhhhh----HHHHHHHHHHHHcCCCc--------hhCCChhhCCHHHHHHHHHHHH
Confidence 0111110 000 01222222110 00011112222211111 00111112332
Q ss_pred -cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHhhcCC
Q 024748 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 199 (263)
Q Consensus 140 -~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L~~G~ 199 (263)
+.+| +++++|||+..+|+.......+.++++...+.+ |++..+..+||++ .+|..+.
T Consensus 243 L~~~P--~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri-~vl~~~~ 305 (607)
T 3bk7_A 243 LLRKA--HFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVI-HVVYGEP 305 (607)
T ss_dssp HHSCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEESCT
T ss_pred HhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEE-EEECCCc
Confidence 4678 899999999999999988888888877644443 9999999999999 7887543
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.32 E-value=3.9e-14 Score=137.58 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=50.9
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+.+|..+++++|||+...|+.......+.+.++...+.+ |++..+. .||++ .+| .+|+++..|+.
T Consensus 218 ~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i-i~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 218 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYL-IDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEE-EEECSSSGGGCCSEEEEECH
T ss_pred hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEE-EEecccccccCCEEEEecCH
Confidence 356633499999999999999988888888877655544 9998764 59999 777 78888877654
No 68
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.32 E-value=3.5e-12 Score=114.31 Aligned_cols=95 Identities=35% Similarity=0.612 Sum_probs=80.4
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
.++.--.|+|+|.+|||||||+|.|++....++++|++|+.|+.|.+.+++. ..+.++|++|+.
T Consensus 154 eLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i 217 (342)
T 1lnz_A 154 ELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLI 217 (342)
T ss_dssp EEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHH
T ss_pred hhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCc
Confidence 3333346999999999999999999998777799999999999999887652 258999999998
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...+....+...++..++.++.+++|+|+.+
T Consensus 218 ~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 218 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHTTCTTTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred ccccccchhHHHHHHHHHhccEEEEEEECCc
Confidence 7666666788889999999999999999854
No 69
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.31 E-value=1.8e-12 Score=107.78 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHhhhc----cHHHHHHHHHHHHHHhh-hcc-----chhHHHHHHHHHHHHHHhh
Q 024748 141 VDPVRDLEVISAELRLK----DIEFMERRIEDVEKSMK-RSN-----DKQLKIEHELCQRVKAWLQ 196 (263)
Q Consensus 141 ~~P~~~i~ilde~~~~~----d~~~~~k~~~~~~~~~~-~~~-----~h~~~~i~~l~d~i~~~L~ 196 (263)
.+| ++.++||++... |+....+.++.+.++.. .+. +|+++.+..+|+++ .+|.
T Consensus 140 ~~p--~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i-~~l~ 202 (207)
T 1znw_A 140 APP--SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSL-LVGT 202 (207)
T ss_dssp ECS--CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHH-HC--
T ss_pred ECC--CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHH-HHhc
Confidence 457 799999999886 66666666666666543 233 39999999999999 6663
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.30 E-value=1.6e-13 Score=136.86 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=47.2
Q ss_pred cCCCchhHHHHHHHhhhccHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHHHHHHhhcCCccccC
Q 024748 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS---NDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (263)
Q Consensus 140 ~~~P~~~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~---~~h~~~~i~~l~d~i~~~L~~G~~~~~g 204 (263)
..+| +++++|||+...|+.......+.+.+.. .. .+|+.+.+..+|+++ .+|.+|+++..|
T Consensus 917 ~~~P--~LLLLDEPT~gLD~~s~~~L~~~L~~~g-~tVIiISHD~e~v~~l~DrV-ivL~~G~Iv~~G 980 (986)
T 2iw3_A 917 WQRP--HLIVLDEPTNYLDRDSLGALSKALKEFE-GGVIIITHSAEFTKNLTEEV-WAVKDGRMTPSG 980 (986)
T ss_dssp TTCC--SEEEEECGGGTCCHHHHHHHHHHHHSCS-SEEEEECSCHHHHTTTCCEE-ECCBTTBCCC--
T ss_pred HhCC--CEEEEECCccCCCHHHHHHHHHHHHHhC-CEEEEEECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 4678 8999999999999998877776665431 11 139999999999999 888999887664
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.22 E-value=3.1e-13 Score=134.84 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=101.4
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCC--CCCcc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS--AVPAF 89 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~--~~~~~ 89 (263)
.....++.++..|+++||+|+||||||||+|+|+|-.+ .+++. ...+ ...|+++. ..+..
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~------~~~~----------~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPT------QEEC----------RTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCC------TTTS----------CEEETTCCCCCCCTT
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcc------ccce----------eEEEEcccccccccC
Confidence 35667889999999999999999999999999996321 11110 0000 01233332 23446
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeecc------------cCCCchhHHHHHHHhhhc
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 157 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~~------------~~~P~~~i~ilde~~~~~ 157 (263)
+++.+++.+ . .. + ....+.+.++..+.- ..+.+..+..+++ ..+| +++++|||+...
T Consensus 511 ltv~e~l~~-~-~~-~--~~~~v~~~L~~lgL~----~~~~~~~~~~LSGGqkQRvaLArAL~~~P--~lLLLDEPTs~L 579 (986)
T 2iw3_A 511 TSVLDFVFE-S-GV-G--TKEAIKDKLIEFGFT----DEMIAMPISALSGGWKMKLALARAVLRNA--DILLLDEPTNHL 579 (986)
T ss_dssp SBHHHHHHT-T-CS-S--CHHHHHHHHHHTTCC----HHHHHSBGGGCCHHHHHHHHHHHHHHTTC--SEEEEESTTTTC
T ss_pred CcHHHHHHH-h-hc-C--HHHHHHHHHHHcCCC----hhhhcCCcccCCHHHHHHHHHHHHHhcCC--CEEEEECCccCC
Confidence 777777754 1 11 1 112222333333210 0000001112222 4678 899999999999
Q ss_pred cHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 024748 158 DIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (263)
Q Consensus 158 d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L~~G~~~-~~g~~~ 207 (263)
|+...+...+.+.+ .+. +|+...+..+||++ .+|++|+++ +.|+.+
T Consensus 580 D~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adri-i~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 580 DTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYI-INYEGLKLRKYKGNFT 631 (986)
T ss_dssp CHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEE-EEEETTEEEEEESCHH
T ss_pred CHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEE-EEEECCeeecCCCCHH
Confidence 99998888887776 233 39999999999999 899999986 556543
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.1e-13 Score=126.84 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=93.5
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc-e-eeeCCcchHHHhhhcCCCCC----CCcc
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-R-VNIPDERFEWLCQLFKPKSA----VPAF 89 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G-~-i~~~g~~~~~l~~~~~~~~~----~~~~ 89 (263)
.++..++.|++++|+|+||||||||+|+|+|+. .|+.| . |.+++..-..+ .+.|+.. ....
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-----------~p~~G~~pI~vdg~~~~~i--~~vpq~~~l~~~~~~ 196 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-----------LKFNAYQPLYINLDPQQPI--FTVPGCISATPISDI 196 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-----------HHHHCCCCEEEECCTTSCS--SSCSSCCEEEECCSC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-----------cccCCceeEEEcCCccCCe--eeeccchhhcccccc
Confidence 366788999999999999999999999999994 78899 8 98887321112 2344432 1223
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCCCceeeec--------------ccCCCchhH----HHHH
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD--------------DSVDPVRDL----EVIS 151 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~~l~--------------~~~~P~~~i----~ild 151 (263)
+++.++. +......+.. ....+..++..+......+...++ -..+| ++ +++|
T Consensus 197 ~tv~eni-~~~~~~~~~~-------~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p--~i~~sGLlLD 266 (460)
T 2npi_A 197 LDAQLPT-WGQSLTSGAT-------LLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP--QVRRSGCIVD 266 (460)
T ss_dssp CCTTCTT-CSCBCBSSCC-------SSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH--HHHHSCEEEE
T ss_pred cchhhhh-cccccccCcc-------hHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc--ccCcceEEEe
Confidence 4555554 3322110000 001111111111111000000011 12456 78 9999
Q ss_pred H-HhhhccHHHHHHHHHHHHHHhhhc---cchhHH------HHHHHHHH-----HHHHhh-cCCccccCCC
Q 024748 152 A-ELRLKDIEFMERRIEDVEKSMKRS---NDKQLK------IEHELCQR-----VKAWLQ-DGKDVRLGDW 206 (263)
Q Consensus 152 e-~~~~~d~~~~~k~~~~~~~~~~~~---~~h~~~------~i~~l~d~-----i~~~L~-~G~~~~~g~~ 206 (263)
| |+...|+. .+...+.+++. ... .+|+.. .+..+||+ + .+|+ +|+++ .++.
T Consensus 267 EpPts~LD~~-~~~l~~l~~~~-~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v-i~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEKL-NVNIMLVLCSETDPLWEKVKKTFGPELGNNNI-FFIPKLDGVS-AVDD 333 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHHT-TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE-EEECCCTTCC-CCCH
T ss_pred CCcccccChh-HHHHHHHHHHh-CCCEEEEEccCchhhhHHHHHHhcccccCCEE-EEEeCCCcEE-ECCH
Confidence 9 99999977 33333333332 111 126554 77899999 8 8888 99988 6553
No 73
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.16 E-value=1.4e-12 Score=126.59 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=49.9
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+++++|||+...|+......++.+.++...+.| |++..+ ..||++ .+| .+|+++..|+.
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i-~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI-IDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEEESSSGGGCCEEEEEECH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEE-EEecCCcCCCCCEEEEecCH
Confidence 699999999999999999988888887655544 999877 569999 888 88999988764
No 74
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.16 E-value=3.9e-11 Score=108.39 Aligned_cols=92 Identities=28% Similarity=0.412 Sum_probs=59.6
Q ss_pred cCCCcE-EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 21 FSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 21 i~~g~~-vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
...|.. ++|+|+||||||||+|.|+|.....++++++|+.+..|.+.++|. .+.++|++|+.
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-----------------~v~l~DT~G~i 237 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-----------------KIMLVDTVGFI 237 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-----------------EEEEEECCCBC
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-----------------EEEEEeCCCch
Confidence 344655 999999999999999999999876689999999999999999873 46889999986
Q ss_pred cCcccc-cchHHHHHHHHhhhcceeEEeecc
Q 024748 100 RGAHEG-QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
...... .......++.+..+|.+++++|+.
T Consensus 238 ~~lp~~lve~f~~tl~~~~~aD~il~VvD~s 268 (364)
T 2qtf_A 238 RGIPPQIVDAFFVTLSEAKYSDALILVIDST 268 (364)
T ss_dssp SSCCGGGHHHHHHHHHGGGGSSEEEEEEETT
T ss_pred hcCCHHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 542211 011233455678899999999873
No 75
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.14 E-value=1.1e-10 Score=93.70 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=67.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+|.+++|+|++|||||||+|.|+|...+ ++++|++|+....+.+.+++. .+.++|++|+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM-----------------PLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe-----------------EEEEEECCCcccc
Confidence 5789999999999999999999998754 477888888888888887662 4688999998653
Q ss_pred cccccch-HHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQGL-GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
....... .......++.+|.++.++|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~ 95 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGTT 95 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTT
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 2211111 1223455788999999998753
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.10 E-value=8.3e-12 Score=100.81 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=26.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
++.++++|++++|+|+||||||||++++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 67889999999999999999999999654
No 77
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.05 E-value=5.3e-11 Score=95.13 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=42.9
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
+...++.++++|++++|+|+||||||||+++|+|. . |+.|.|.++|..+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~-----------l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG-----------I-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH-----------T-TCCSCCCCCTTTC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh-----------C-CCCCeEEECCEee
Confidence 44567888999999999999999999999999999 5 7888888888654
No 78
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.04 E-value=2.1e-10 Score=98.04 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=62.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCc--cccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPF--CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~--~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
...+|+|||++|||||||+|.|+|....++.+++ +|..+..+.+.+.+. .+.++||||+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-----------------HVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE-----------------EEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc-----------------EEEEEECCCCCC
Confidence 3468999999999999999999999877654443 777887787777652 589999999975
Q ss_pred Ccccc-cchHHHHHHH----HhhhcceeEEeecc
Q 024748 101 GAHEG-QGLGNSFLSH----IRAVDGIFHVLRAF 129 (263)
Q Consensus 101 ~~~~~-~~~~~~~~~~----~~~~d~~l~vv~~~ 129 (263)
..... ..+...+... .+.+|+++.|+++.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~ 116 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG 116 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence 43321 2222333333 38899999999974
No 79
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.01 E-value=5.5e-10 Score=94.48 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--ccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP--FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~--~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
-.+|+|+|++|||||||+|.|+|.....+..+ ++|..+..+.+.+.+. .+.++||||+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~ 91 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----------------ELVVVDTPGIFDT 91 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE-----------------EEEEEECCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc-----------------eEEEEECCCccCC
Confidence 35899999999999999999999887666666 6777777777777652 5889999999865
Q ss_pred cccccchHHHHHHHH----hhhcceeEEeecc
Q 024748 102 AHEGQGLGNSFLSHI----RAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~----~~~d~~l~vv~~~ 129 (263)
..........+...+ +.+|.++.++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 123 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLG 123 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC
Confidence 443322333333333 3458999999873
No 80
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.99 E-value=5.4e-10 Score=103.23 Aligned_cols=88 Identities=31% Similarity=0.395 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+|+|||++|+|||||||.|+|...++ +++|++|+....+.+.+.|. .+.++||+|+......
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK-----------------TFKLVDTCGVFDNPQD 65 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE-----------------EEEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe-----------------EEEEEECCCccccccc
Confidence 68999999999999999999988764 89999999999999998773 4789999998753221
Q ss_pred --ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 105 --GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 --~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...+..+....++.+|.++.|+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~ 93 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGKR 93 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 22344556677899999999999854
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=101.14 Aligned_cols=68 Identities=26% Similarity=0.236 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH----hhhcCCCC-CCCcceehhhhhccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKS-AVPAFLEIHDIAGLV 99 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l----~~~~~~~~-~~~~~l~~~d~~g~~ 99 (263)
..+||+|+||||||||+|+|+|.. .|+.|.+.++|+++... ...+.++. .++..++++|+++++
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~-----------~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ-----------VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH-----------C------------CCCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 478999999999999999999994 78899998887654211 11234443 455689999999998
Q ss_pred cCcc
Q 024748 100 RGAH 103 (263)
Q Consensus 100 ~~~~ 103 (263)
....
T Consensus 72 ~~~~ 75 (270)
T 3sop_A 72 DQIN 75 (270)
T ss_dssp CCSB
T ss_pred hhcc
Confidence 6544
No 82
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.96 E-value=1.5e-11 Score=104.04 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=28.9
Q ss_pred CcCCcc-cccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 13 AERPIL-GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 13 ~~~~~~-~~i~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+...++ +.+++|++++|+||||||||||+++|++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 333344 5899999999999999999999999993
No 83
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.95 E-value=4.1e-10 Score=96.80 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=90.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc-
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE- 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~- 104 (263)
+|+|+|.+|||||||||.|+|....++++|++|.....|.+.+.+. .+.++|+||.......
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~-----------------~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH-----------------LIEITDLPGVYSLVANA 65 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE-----------------EEEEEECCCCSSCC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe-----------------EEEEEeCCCcccccccc
Confidence 6899999999999999999999766689999999998998887762 5899999998764421
Q ss_pred -----ccchHHHHHHHHhhhcceeEEeeccCCCce----eeecccCCCc----hhHHHHHHHhhhccHHHHHHHHHHHHH
Q 024748 105 -----GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI----IHVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEK 171 (263)
Q Consensus 105 -----~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~----~~l~~~~~P~----~~i~ilde~~~~~d~~~~~k~~~~~~~ 171 (263)
.+.+...++. .+.+|.++.++|+...... ..+.+...|. ++++.....-...+...+.+.+.. .
T Consensus 66 ~~~~~~e~i~~~~~~-~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~--~ 142 (256)
T 3iby_A 66 EGISQDEQIAAQSVI-DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGC--S 142 (256)
T ss_dssp ---CHHHHHHHHHHH-HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCS--C
T ss_pred cCCCHHHHHHHHHHh-hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCC--C
Confidence 1112222221 1679999999998642110 0111112231 355555543333343322222210 0
Q ss_pred HhhhccchhHHHHHHHHHHHHHH
Q 024748 172 SMKRSNDKQLKIEHELCQRVKAW 194 (263)
Q Consensus 172 ~~~~~~~h~~~~i~~l~d~i~~~ 194 (263)
.... ++....+++++.+.+...
T Consensus 143 vi~~-SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPI-QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEEC-BGGGTBSHHHHHHHHHTC
T ss_pred EEEE-ECCCCCCHHHHHHHHHhh
Confidence 1111 126667888899988444
No 84
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.95 E-value=2.2e-10 Score=107.06 Aligned_cols=92 Identities=32% Similarity=0.374 Sum_probs=74.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc-
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV- 99 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~- 99 (263)
+.|..|+|+|++|||||||+|.|+|...+ ++++|+||+++..+.+.++|. .+.++||+|+.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~-----------------~~~l~DTaG~~~ 303 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI-----------------LFRIVDTAGVRS 303 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE-----------------EEEEEESSCCCS
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe-----------------EEEEEECCCccc
Confidence 45679999999999999999999998765 489999999999999988763 48899999987
Q ss_pred cCcccccchH-HHHHHHHhhhcceeEEeeccC
Q 024748 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~d~~l~vv~~~~ 130 (263)
......+..+ ...+..++.+|.+++|+|+.+
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 335 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASS 335 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCCC
Confidence 5433322222 345677899999999999854
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.95 E-value=2.3e-09 Score=85.19 Aligned_cols=86 Identities=26% Similarity=0.426 Sum_probs=57.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||+|.|+|.....+.+|++|+....+.+.+++ ..+.++|++|.......
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT-----------------EEEEEEECCCCSCSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC-----------------cEEEEEECCCcccCCCc
Confidence 4799999999999999999999876667788888888888777654 25889999997653221
Q ss_pred c--cchHHHHHHHHhhhcceeEEeec
Q 024748 105 G--QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~--~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ..+...+.. ...+|.++.++|+
T Consensus 67 ~~~~~~~~~~~~-~~~~~~~i~v~D~ 91 (165)
T 2wji_A 67 SIDEIIARDYII-NEKPDLVVNIVDA 91 (165)
T ss_dssp SHHHHHHHHHHH-HHCCSEEEEEEET
T ss_pred chhHHHHHHHHh-cCCCCEEEEEecC
Confidence 1 111122221 1367888888776
No 86
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.94 E-value=1e-09 Score=101.41 Aligned_cols=90 Identities=32% Similarity=0.383 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
..+++|+|+||||||||+|.|+|....+ +++|++|+++..|.+.++|. .+.++|++|+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~-----------------~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR-----------------KYVFVDTAGLRRKS 242 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE-----------------EEEESSCSCC----
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE-----------------EEEEEECCCCcccc
Confidence 3689999999999999999999997654 89999999999999999874 36788999875322
Q ss_pred ccc----c-chHHHHHHHHhhhcceeEEeeccC
Q 024748 103 HEG----Q-GLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 103 ~~~----~-~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
... . .........++.+|.++.++++..
T Consensus 243 ~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~ 275 (439)
T 1mky_A 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ 275 (439)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTT
T ss_pred ccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 110 0 011233566788999999988754
No 87
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.93 E-value=1.3e-09 Score=94.52 Aligned_cols=87 Identities=29% Similarity=0.444 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||||.|+|....++++|++|+.+..|.+.. + ..+.++|++|.......
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccCCC
Confidence 57999999999999999999998766789999999888776543 2 25889999998654321
Q ss_pred --ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 105 --GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 --~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.+.+...+... ..+|.++.++|+..
T Consensus 66 ~~~e~v~~~~~~~-~~~d~vi~V~D~t~ 92 (272)
T 3b1v_A 66 SPEAKVARDYLLS-QRADSILNVVDATN 92 (272)
T ss_dssp SHHHHHHHHHHHT-TCCSEEEEEEEGGG
T ss_pred ChHHHHHHHHHhc-CCCCEEEEEecCCc
Confidence 11222222221 36899999999853
No 88
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.90 E-value=1e-09 Score=95.10 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|.+|||||||+|.|+|....++++|++|..+..+.+.+.+ ..+.++|+||.......
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCccccc
Confidence 5899999999999999999999976668899999988888887765 25788999998764421
Q ss_pred --ccchHHHHHH---HHhhhcceeEEeeccCCCcee----eecccCCC----chhHHHHHHHhhhccHHHHHHHHHHHHH
Q 024748 105 --GQGLGNSFLS---HIRAVDGIFHVLRAFEDPDII----HVDDSVDP----VRDLEVISAELRLKDIEFMERRIEDVEK 171 (263)
Q Consensus 105 --~~~~~~~~~~---~~~~~d~~l~vv~~~~~~~~~----~l~~~~~P----~~~i~ilde~~~~~d~~~~~k~~~~~~~ 171 (263)
...+...+.. ..+.+|.++.++|+....... .+.+...| .++++..+......+...+.+.+. -.
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--~~ 144 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG--CP 144 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--SC
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC--CC
Confidence 1122222222 236899999999985421100 01111112 124555444222223222222111 00
Q ss_pred HhhhccchhHHHHHHHHHHHHHHhhcC
Q 024748 172 SMKRSNDKQLKIEHELCQRVKAWLQDG 198 (263)
Q Consensus 172 ~~~~~~~h~~~~i~~l~d~i~~~L~~G 198 (263)
.... ++....+++++.+.+...+...
T Consensus 145 ~i~~-SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 145 VIPL-VSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp EEEC-CCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHhcC
Confidence 1111 2367788888888886666543
No 89
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.87 E-value=1.2e-09 Score=100.91 Aligned_cols=89 Identities=25% Similarity=0.274 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-+|+|||++|+|||||||.|+|...++ ++.|++|++...+.+.+.+. .+.++||+|+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS-----------------CCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 379999999999999999999987765 78999999888887776652 588999999864322
Q ss_pred c-ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~-~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. ...+.......++.+|.++.++|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~ 94 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGRE 94 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 1 12233445667889999999999864
No 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.84 E-value=8.9e-11 Score=115.95 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=50.2
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+++++|||+.+.|+...++.++.+.++...+.+ |+++.+ .+||++ ..| ..|+++..++.
T Consensus 753 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDri-i~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWV-LDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEECSSSGGGCCSEEEEECH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEECCCCCCCCCEEEEEcCH
Confidence 899999999999999999988888887655544 999998 789999 888 67888877653
No 91
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.84 E-value=1.3e-09 Score=97.34 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=39.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
....++..+..|++++|+|+||||||||+|+|+|.. .|+.|.|.+.+.+
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-----------~~~~g~v~i~~~d 92 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-----------TAAGHKVAVLAVD 92 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-----------HHTTCCEEEEEEC
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-----------hhCCCEEEEEEEc
Confidence 345677889999999999999999999999999883 5666766665443
No 92
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.83 E-value=2.4e-09 Score=92.43 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||+|.|+|.....+++|++|.....+.+.+.+. .+.++|+||.......
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK-----------------EFLVVDLPGIYSLTAH 66 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE-----------------EEEEEECCCCSCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc-----------------eEEEEeCCCccccccC
Confidence 47999999999999999999998765678888888888888777652 4889999998754321
Q ss_pred c-cc-hHHHHHHHHhhhcceeEEeeccC
Q 024748 105 G-QG-LGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 105 ~-~~-~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. .. +...+. ..+.+|.++.++|+..
T Consensus 67 ~~~~~~~~~~~-~~~~~d~vi~v~D~~~ 93 (271)
T 3k53_A 67 SIDELIARNFI-LDGNADVIVDIVDSTC 93 (271)
T ss_dssp CHHHHHHHHHH-HTTCCSEEEEEEEGGG
T ss_pred CHHHHHHHHhh-hccCCcEEEEEecCCc
Confidence 1 11 111111 1256899999998753
No 93
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.80 E-value=3.6e-09 Score=90.95 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|.+|||||||||.|+|....++++|++|.....|.+...+ ..+.++|++|.......
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~ 68 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSLGYS 68 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCccCCC
Confidence 4799999999999999999999876678899999888888776644 25899999998754321
Q ss_pred --ccchHHHHHHHHhhhcceeEEeeccCCCcee----eecccCCCc----hhHHHHHHHhhhccHHHHHHHHHHHHHHhh
Q 024748 105 --GQGLGNSFLSHIRAVDGIFHVLRAFEDPDII----HVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (263)
Q Consensus 105 --~~~~~~~~~~~~~~~d~~l~vv~~~~~~~~~----~l~~~~~P~----~~i~ilde~~~~~d~~~~~k~~~~~~~~~~ 174 (263)
.+.+...+... +.+|.++.++|+....... .+.+...|. ++++..+......+...+.+.+. + ....
T Consensus 69 ~~~e~v~~~~~~~-~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~-~vi~ 145 (258)
T 3a1s_A 69 SIDEKIARDYLLK-GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-I-PVVF 145 (258)
T ss_dssp SHHHHHHHHHHHH-SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-S-CEEE
T ss_pred CHHHHHHHHHHhh-cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC-C-CEEE
Confidence 11122222221 5789999999986432110 111112221 24555444322233222222111 0 0011
Q ss_pred hccchhHHHHHHHHHHHHHHhh
Q 024748 175 RSNDKQLKIEHELCQRVKAWLQ 196 (263)
Q Consensus 175 ~~~~h~~~~i~~l~d~i~~~L~ 196 (263)
. ++....++.++.+.+...+.
T Consensus 146 ~-SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 146 T-SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp C-CTTTCTTHHHHHHHHHHHHH
T ss_pred E-EeeCCcCHHHHHHHHHHHhh
Confidence 1 12566677788888766554
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.80 E-value=2.2e-09 Score=99.56 Aligned_cols=89 Identities=25% Similarity=0.276 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-+|+|+|++|||||||+|.|+|...++ ++.|++|+....+.+.+.+ ..+.++||+|+.....
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGDE 86 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-----------------SCCEEECCCC------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-----------------ceEEEEECCCCCCcch
Confidence 489999999999999999999987664 7889999888877776654 2589999999874322
Q ss_pred c-ccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~-~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
. ...+.......++.+|.++.++|+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~ 114 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGRE 114 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSS
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCC
Confidence 1 22333455667789999999999753
No 95
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.79 E-value=1.9e-09 Score=90.23 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+...++..+++|++++|+||||||||||+++|+|+.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3577899999999999999999999999999999984
No 96
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.79 E-value=1.3e-09 Score=108.57 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=50.9
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDWK 207 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~~ 207 (263)
+++++|||+.++|+...++.++.+.++...+.| |+++.+.. ||+| ..| ..|+++..|+..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI-ivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI-IDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE-EEEESSSGGGCCEEEEEESHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE-EEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999988887765554 99988754 9999 888 789999888643
No 97
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.78 E-value=1.7e-09 Score=100.83 Aligned_cols=94 Identities=26% Similarity=0.210 Sum_probs=49.5
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
+..|.+|+|+|++|||||||+|.|+|....+ +++|++|+......+.++|. .+.++||+|+.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~-----------------~l~liDT~G~~ 292 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT-----------------MFRLTDTAGLR 292 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE-----------------EEEEEC-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe-----------------EEEEEECCCCC
Confidence 3467889999999999999999999987654 88999999998888888763 58999999986
Q ss_pred cCcccccch-HHHHHHHHhhhcceeEEeeccCC
Q 024748 100 RGAHEGQGL-GNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
......+.. .......++.+|.+++|+|+.+.
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 325 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE 325 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETTTC
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECCCC
Confidence 533221111 12345567889999999998643
No 98
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.77 E-value=1.5e-08 Score=86.48 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCc-cccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPF-CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~-~~~~-~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
..+|+|+|++|||||||+|.|+|...... ..|. +|+....+.+.+.+ ..+.++||||+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-----------------REIVIIDTPDMFSW 84 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-----------------EEEEEEECCGGGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-----------------CEEEEEECcCCCCC
Confidence 35899999999999999999999875543 3344 56666666666655 25899999998865
Q ss_pred cccccc----hHHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQG----LGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~~----~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...... +...+...++.+|.++.|+++..
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 85 KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 433211 12233345677999999999853
No 99
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.76 E-value=6.5e-09 Score=83.73 Aligned_cols=87 Identities=25% Similarity=0.428 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.|+|.....+.+|++|..+..+.+.+++ ..+.++|++|.......
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~~ 70 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLTAN 70 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSCCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC-----------------cEEEEEECCCcCccccc
Confidence 5899999999999999999999765556778888888888777654 25789999997654221
Q ss_pred c--cchHHHHHHHHhhhcceeEEeecc
Q 024748 105 G--QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~--~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. ..+...+... ..+|.++.++|..
T Consensus 71 ~~~~~~~~~~~~~-~~~~~~i~v~d~~ 96 (188)
T 2wjg_A 71 SIDEIIARDYIIN-EKPDLVVNIVDAT 96 (188)
T ss_dssp SHHHHHHHHHHHH-HCCSEEEEEEEGG
T ss_pred cHHHHHHHHHHhc-cCCCEEEEEecch
Confidence 1 1111222111 3478888888874
No 100
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.75 E-value=1.7e-08 Score=78.82 Aligned_cols=87 Identities=26% Similarity=0.332 Sum_probs=56.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
+++++|++|+|||||++.+++.... ...++.+|.......+.+.+ ..+.++|++|.......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccch
Confidence 6899999999999999999988654 36677777776666666554 25789999998754321
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
...........++.+|.++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~ 90 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGR 90 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1122334455668899999998863
No 101
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.73 E-value=1.3e-09 Score=108.43 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=49.5
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+++++|||+.+.|+......++.+.++...+.+ |+++.+ ..||++ .+| ..|+++..|+.
T Consensus 868 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI-ivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 868 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI-IDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEECSSSTTSCCSEEEEESH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEEcCCCCCCCCEEEEecCH
Confidence 899999999999999999999988887655544 999987 579999 888 67888877653
No 102
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.72 E-value=3.4e-09 Score=98.73 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~ 74 (263)
.+...++..+++ +++||+||||||||||+++|+|+ ..|+.|.|.++|+.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-----------LIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH-----------HCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEEcc
Confidence 456788899999 99999999999999999999999 4899999999887653
No 103
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.72 E-value=1.6e-08 Score=82.61 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
.+++|+|+||||||||++.|+|........|..+..+..|.+.++|..+ .+.++|++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~---------------~~~i~Dt~g~~ 65 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI---------------KAQIWDTAGQE 65 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE---------------EEEEEECSSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE---------------EEEEEECCCch
Confidence 4799999999999999999999865444444444556678888877532 45667777643
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.72 E-value=1.9e-08 Score=81.88 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
.+++|+|+||||||||++.++|........|..+.....|.+.++|+.+ .+.++|++|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~---------------~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI---------------KAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE---------------EEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE---------------EEEEEECCCCcc
Confidence 5899999999999999999999875554445555556778888877532 355678877543
No 105
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.72 E-value=1.7e-09 Score=107.84 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=49.4
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHHHHh------hcCCccccCCC
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 206 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~~-----h~~~~i~~l~d~i~~~L------~~G~~~~~g~~ 206 (263)
+++++|||+.+.|+......++.+.++...+.+ |+++.+ ..||++ .+| ..|+++..|+.
T Consensus 886 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI-ivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 886 TVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWI-IDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEEESSSTTSCSEEEEEECH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEECCCcCCCCCEEEEecCH
Confidence 899999999999999999988888887655544 999987 579999 888 57888877654
No 106
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.69 E-value=3.1e-09 Score=98.76 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=62.3
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
++..|.+|+|+|++|||||||+|.|+|...++ +++|++|+......+.++|. .+.++||+|+
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~v~liDT~G~ 282 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI-----------------PVQVLDTAGI 282 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE-----------------EEEECC----
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE-----------------EEEEEECCcc
Confidence 34567889999999999999999999986654 78899998888888887763 4789999998
Q ss_pred ccCcccccch-HHHHHHHHhhhcceeEEeeccC
Q 024748 99 VRGAHEGQGL-GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.......+.. .......++.+|.+++|+++.+
T Consensus 283 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 315 (462)
T 3geh_A 283 RETSDQVEKIGVERSRQAANTADLVLLTIDAAT 315 (462)
T ss_dssp ----------------CCCCSCSEEEEEEETTT
T ss_pred ccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence 6532221111 1334456678999999999754
No 107
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.66 E-value=1.8e-09 Score=90.02 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=28.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
++..+++|+++||+||||||||||+++|+|+
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556789999999999999999999999998
No 108
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.66 E-value=3.3e-08 Score=91.15 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=60.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|+|||||+|.|+|.... .++++++|+....+.+.++|. .+.++||+|+.....
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKKGK 238 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE-----------------EEEETTHHHHTCBTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe-----------------EEEEEECCCcCcCcc
Confidence 58999999999999999999998765 488999999888888877663 478999999865443
Q ss_pred cccc----hHHHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQG----LGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~----~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.... ........++.+|.++.++|+.+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~ 269 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEE 269 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCc
Confidence 2111 11223456788999999999865
No 109
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.64 E-value=8.4e-09 Score=86.73 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=31.6
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHH-cCCCCC-CCCCccccCCcccee
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT-KLAIPA-ENFPFCTIEPNEARV 66 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~-G~~~~~-~~~~~~t~~p~~G~i 66 (263)
+--..+++..+++|+++||+||||||||||+++|+ |..... .....+|..|..|.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence 33445788899999999999999999999999999 986433 344555666666654
No 110
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.63 E-value=7.6e-09 Score=91.05 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=32.5
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....++.+|++|++++|+||||||||||+++|+|+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 45667899999999999999999999999999998
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.63 E-value=3.1e-08 Score=80.30 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=34.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
..+++|++++|+|+||||||||+++|+|. +..|.|.+++..+
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~-------------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL-------------PGVPKVHFHSDDL 45 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC-------------SSSCEEEECTTHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc-------------cCCCeEEEcccch
Confidence 35788999999999999999999999986 4567888877554
No 112
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.63 E-value=1.1e-08 Score=90.11 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
.+++..+.+|++++|+|+||||||||++.|+|.. .|+.|.|.+.|.++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-----------~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-----------KNEGTKVLMAAGDT 138 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-----------HHTTCCEEEECCCC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-----------HHcCCeEEEEeecc
Confidence 3567778999999999999999999999999994 78899999887653
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.62 E-value=1.8e-08 Score=83.56 Aligned_cols=91 Identities=24% Similarity=0.239 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~-~-~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
..+|+|+|.+|||||||+|.|+|.. . ..++.+++|.......+...+ ...+.++|++|+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCcc
Confidence 4689999999999999999999986 3 346777777665433332111 136899999998654
Q ss_pred ccccc------chHHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQ------GLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~------~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
..... .+...++.....+|.++.++++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 127 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR 127 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC
Confidence 22211 122233334444788999998753
No 114
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.61 E-value=4.7e-08 Score=87.73 Aligned_cols=91 Identities=24% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+++++|+||||||||+|.|+|....+.+++++|..+..+.+...+ ..+.++|++|+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCcccc
Confidence 3456999999999999999999999875557788888877666555433 25889999998654
Q ss_pred ccc-ccchH-HHHHHHHhhhcceeEEeecc
Q 024748 102 AHE-GQGLG-NSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~-~~~~~-~~~~~~~~~~d~~l~vv~~~ 129 (263)
... ..... ..+......+|.+++++|+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~ad~illV~D~s 257 (357)
T 2e87_A 228 PISERNEIEKQAILALRYLGNLIIYIFDPS 257 (357)
T ss_dssp CSTTSCHHHHHHHHGGGGTCSEEEEEECTT
T ss_pred chhhhhHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 321 11111 22222334578888888863
No 115
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.61 E-value=6e-08 Score=83.21 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
..+|+|+|..|+|||||+|.|+|.... .++++++|.......+.+.+. .++++||||+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF-----------------TINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE-----------------EEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe-----------------eEEEEECCCCCCcc
Confidence 368999999999999999999998764 477888888887777766552 58999999987654
Q ss_pred ccccchHHHHHHHHh------hhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIR------AVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~------~~d~~l~vv~~ 128 (263)
... ..+.+.+. .+|.++.|.+.
T Consensus 99 ~~~----~~~~~~i~~~l~~~~~~~il~V~~~ 126 (262)
T 3def_A 99 YVN----HQALELIKGFLVNRTIDVLLYVDRL 126 (262)
T ss_dssp EEC----HHHHHHHHHHTTTCEECEEEEEEES
T ss_pred cch----HHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 322 22223232 56777777654
No 116
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.61 E-value=1.8e-08 Score=82.73 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.5
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..+..|.+++|+|+||||||||+|.|+|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999999985
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.60 E-value=2.2e-08 Score=89.76 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=43.6
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHH
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l 76 (263)
+...+ ..|.+|+++||+|+||||||||+++|+|+. +|+.|.+.+.|++...+
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-----------~~~~g~i~~~G~~~~ev 112 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA-----------SADIIVLALIGERGREV 112 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS-----------CCSEEEEEEESCCHHHH
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCEEEEEEecccHHHH
Confidence 34445 778899999999999999999999999994 88999999888764433
No 118
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.60 E-value=9.4e-09 Score=91.51 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=41.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
..++..+++|+.++|+|+||||||||+++|+|+. +|+.|.|.++|..
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-----------~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-----------PKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-----------CTTSCEEEEESSC
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-----------cCCCcEEEECCee
Confidence 3456777899999999999999999999999994 8899999998753
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=8e-09 Score=94.73 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=32.1
Q ss_pred cCCcccccCCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 024748 14 ERPILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 14 ~~~~~~~i~~g~~--vgivG~nGaGKSTLl~~L~G~~ 48 (263)
...++..++.|++ +||+|+||||||||+|+|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 6788899999999 9999999999999999999985
No 120
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=1.2e-08 Score=92.12 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhh
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~------~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~ 96 (263)
.+..++++|++|+|||||+|.|+|. ....+++|++|+.+..+. +. ..+.++|||
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDtP 220 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE------------------SGATLYDTP 220 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS------------------TTCEEEECC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC------------------CCeEEEeCC
Confidence 4568999999999999999999987 334478899887765432 21 247999999
Q ss_pred ccccCcccccchHHHHHHHH---hhhcceeEEeec
Q 024748 97 GLVRGAHEGQGLGNSFLSHI---RAVDGIFHVLRA 128 (263)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~---~~~d~~l~vv~~ 128 (263)
|+.........+....+..+ +..+.++++++.
T Consensus 221 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 221 GIINHHQMAHFVDARDLKIITPKREIHPRVYQLNE 255 (369)
T ss_dssp SCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECT
T ss_pred CcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcC
Confidence 99865432333333444444 667777787776
No 121
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.58 E-value=7.8e-09 Score=89.08 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-cceeeeCCcch
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERF 73 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-~G~i~~~g~~~ 73 (263)
...++ +.+|++++|+||||||||||+++|+|+ ..|. .|.|.+.|.++
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~-----------~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPI 64 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH-----------HHHHCCCEEEEEESSC
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh-----------CCCCCCCEEEEcCCcc
Confidence 34444 889999999999999999999999999 4777 89998877553
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.58 E-value=1.9e-08 Score=90.66 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=41.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~ 71 (263)
..++..+++|+.++|+|+||||||||+|+|+|+. +|+.|.|.+.|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-----------~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-----------PFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-----------CTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-----------CCCceEEEECCc
Confidence 4567788999999999999999999999999994 889999999874
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.58 E-value=1.2e-07 Score=87.88 Aligned_cols=91 Identities=22% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
...+++++|.+|+|||||+|.|+|..... ++++++|+....+.+.+++. .++++||+|+...
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE-----------------EEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc-----------------eEEEEECCCCCcC
Confidence 45689999999999999999999886544 88999999998888887763 5889999998764
Q ss_pred cccc---c-chHHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEG---Q-GLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~---~-~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.... + ......+..++.+|.++.++|+.+
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 4321 1 112234456788999999999865
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=1.7e-08 Score=83.08 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCccce
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEAR 65 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~--~~~~~~t~~p~~G~ 65 (263)
++|..++|+||||||||||+++|+|..... .....+|+.|..|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 468899999999999999999999976422 23445566777776
No 125
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.55 E-value=1.7e-07 Score=74.36 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+...+|+|+|++|||||||++.+++........+.+|.......+.+++. .+.++|++|....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 68 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK-----------------KITFLDTPGHEAF 68 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE-----------------EEEESCCCSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc-----------------eEEEEECCCCHHH
Confidence 34578999999999999999999987655556666666666666666552 4678999996543
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.... ...++.+|.++.++++
T Consensus 69 ~~~~-------~~~~~~~d~~i~v~d~ 88 (178)
T 2lkc_A 69 TTMR-------ARGAQVTDIVILVVAA 88 (178)
T ss_dssp SCSC-------CSSCCCCCEEEEEEET
T ss_pred HHHH-------HHHHhhCCEEEEEEEC
Confidence 2211 1223567888888875
No 126
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.55 E-value=1.1e-07 Score=79.45 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=56.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|++|||||||+|.|++.....++++++|.....+.+.+.+ ..+.++|++|......
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDRAF 91 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTSCG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCccc
Confidence 46899999999999999999998865445667777665555444432 2588999999865332
Q ss_pred cccc-h-HHHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQG-L-GNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~-~-~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.... + ........+.+|+++.++|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 92 ENRNTIEMTTITALAHINGVILFIIDISE 120 (228)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEEEEETTC
T ss_pred chhhhHHHHHHHHhhccccEEEEEEeccc
Confidence 1111 1 1112223466788899988753
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.54 E-value=5.5e-08 Score=80.89 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=28.1
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
+.+++|++++|+||||||||||+++|+|..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999953
No 128
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.54 E-value=3e-08 Score=84.20 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 8 SKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 8 ~~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|........++..+++|+++||+|+||||||||+++|+|.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999986
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.54 E-value=7e-09 Score=88.09 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCccceeeeCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIPD 70 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~---G~~~~~~~~~~~t~~p~~G~i~~~g 70 (263)
.+++++|+|+||||||||+++|+ |+. .++.|.+.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-----------~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-----------HLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-----------CEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-----------EecHHHHHHHH
Confidence 36899999999999999999999 984 77888876654
No 130
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.54 E-value=2.6e-08 Score=89.55 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
.+++..+.+|++++|+|+||||||||++.|+|.. .|..|.|.+.|.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-----------~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-----------KNEGTKVLMAAGDT 195 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-----------HHTTCCEEEECCCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc-----------cccCCEEEEecccc
Confidence 3567788999999999999999999999999994 78889999887654
No 131
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.52 E-value=3.2e-08 Score=83.03 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=25.1
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..++|++++|+||||||||||+++|+|..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999999999985
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=2.6e-08 Score=80.96 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCcccee
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARV 66 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~--~~~~~~t~~p~~G~i 66 (263)
|.++||+||||||||||+++|+|..... .....+|+.|..|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 5689999999999999999999986422 344556777777764
No 133
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.52 E-value=1.3e-07 Score=76.31 Aligned_cols=86 Identities=26% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
..-.+|+|+|++|||||||++.+++........+..+.......+.+++.. ..+.++|++|....
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQERF 82 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 344699999999999999999999765433222222222223334444321 25889999984321
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. . ......++.+|.++.++++
T Consensus 83 ~---~---~~~~~~~~~~d~iilv~D~ 103 (189)
T 1z06_A 83 R---K---SMVQHYYRNVHAVVFVYDM 103 (189)
T ss_dssp H---T---TTHHHHHTTCCEEEEEEET
T ss_pred h---h---hhhHHHhcCCCEEEEEEEC
Confidence 1 0 1122345788999999886
No 134
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.52 E-value=5.5e-08 Score=89.78 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=42.4
Q ss_pred CcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 13 ~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
+...+ ..+.+|++++|+|+||||||||+++|+|+. +|+.|.|.+.|++
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-----------~~~~G~i~~~G~r 194 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-----------RADVIVVGLIGER 194 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-----------CCSEEEEEEESCC
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-----------CCCeEEEEEecee
Confidence 34445 788999999999999999999999999994 8999999999983
No 135
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.52 E-value=1.5e-07 Score=80.94 Aligned_cols=87 Identities=24% Similarity=0.215 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++++|.+|+|||||+|.|+|.... .++++++|..+....+...+ ..++++||||+.....
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEGGY 102 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCCcc
Confidence 58999999999999999999998754 36677777666554444333 2589999999876433
Q ss_pred cccchHHHHHHH--HhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSH--IRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~--~~~~d~~l~vv~~ 128 (263)
........+... .+.+|+++.+++.
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~ 129 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRL 129 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEES
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 221111111111 1357888888665
No 136
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=5.1e-08 Score=79.86 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..+.+|+++||+||||||||||+++|+|..
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999999984
No 137
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.50 E-value=1.7e-07 Score=74.33 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.|++........+..+.......+.+++.. ..+.++|++|.......
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 74 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERFRTI 74 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhhhhh
Confidence 589999999999999999999876544444555544444555555432 25888999985432211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
....++.+|.++.++++
T Consensus 75 -------~~~~~~~~d~~i~v~d~ 91 (181)
T 3tw8_B 75 -------TSTYYRGTHGVIVVYDV 91 (181)
T ss_dssp -------CGGGGTTCSEEEEEEET
T ss_pred -------HHHHhccCCEEEEEEEC
Confidence 11234678888888876
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.50 E-value=3.9e-08 Score=91.59 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=41.7
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
...++..+..|++++|+|+||||||||+++|+|+ +.+..|.|.+.+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl-----------l~~~~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ-----------FEQQGKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEECCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH-----------hhhcCCeEEEecCc
Confidence 4567788999999999999999999999999999 47888999886543
No 139
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.49 E-value=1.5e-07 Score=75.93 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.|++........+.++.......+.+++.. ..+.++|++|.....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 79 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFR-- 79 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhhh--
Confidence 589999999999999999999876544444555544444555555432 258889999843221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+ ....++.+|.++.++++
T Consensus 80 --~~---~~~~~~~~d~~i~v~d~ 98 (196)
T 3tkl_A 80 --TI---TSSYYRGAHGIIVVYDV 98 (196)
T ss_dssp --TT---HHHHHTTCSEEEEEEET
T ss_pred --hh---HHHHHhhCCEEEEEEEC
Confidence 11 22345778999998886
No 140
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.49 E-value=3.9e-08 Score=86.35 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=30.2
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee---CCcch
Q 024748 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERF 73 (263)
Q Consensus 18 ~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~---~g~~~ 73 (263)
...+-.|++++|+|+||||||||+|+|+|+. .|+.|.|.+ .|+.+
T Consensus 163 lf~~l~geiv~l~G~sG~GKSTll~~l~g~~-----------~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 163 LKEYLKGKISTMAGLSGVGKSSLLNAINPGL-----------KLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHHSSSEEEEECSTTSSHHHHHHHHSTTC-----------CCC-------------C
T ss_pred HHHHhcCCeEEEECCCCCcHHHHHHHhcccc-----------cccccceecccCCCCCc
Confidence 3445578999999999999999999999994 788999888 66543
No 141
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=1.9e-07 Score=76.83 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=53.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.-.+|+|+|++|||||||++.+++........+..+.......+.+++.. ..+.++|++|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~-- 87 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQER-- 87 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGG--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHH--
Confidence 34689999999999999999998765332222222222223344444422 2588999998432
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++|+
T Consensus 88 -----~~~~~~~~~~~~d~~i~v~D~ 108 (201)
T 2ew1_A 88 -----FRSITQSYYRSANALILTYDI 108 (201)
T ss_dssp -----GHHHHGGGSTTCSEEEEEEET
T ss_pred -----HHHHHHHHHhcCCEEEEEEEC
Confidence 222234456788998888876
No 142
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.47 E-value=2.4e-07 Score=72.58 Aligned_cols=82 Identities=23% Similarity=0.228 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++........|..+.......+.+++.. ..+.++|++|.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~-- 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT---------------VKFEIWDTAGQERFA-- 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCChhhh--
Confidence 479999999999999999999875332222222222222333343321 258899999853211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~ 85 (170)
T 1ek0_A 67 -----SLAPXYYRNAQAALVVYDV 85 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEET
T ss_pred -----hhhhhhhccCcEEEEEEec
Confidence 1223445788999888876
No 143
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.47 E-value=1.8e-07 Score=74.08 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|+|||||++.+++........+..+.......+.+++.. ..+.++|++|......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~~- 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS- 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHHHH-
Confidence 589999999999999999999765433333333333333444444422 2588999998543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 79 ------~~~~~~~~~d~~i~v~d~ 96 (179)
T 2y8e_A 79 ------LIPSYIRDSTVAVVVYDI 96 (179)
T ss_dssp ------GSHHHHHTCSEEEEEEET
T ss_pred ------HHHHHhcCCCEEEEEEEC
Confidence 112345678998888876
No 144
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.46 E-value=1.4e-07 Score=75.98 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|||||||+|.|++..... ++.+++|....... . ...+.++|++|+.....
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~------------------~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V------------------NSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E------------------TTTEEEEECCCBSSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E------------------CCcEEEEECCCCccccC
Confidence 589999999999999999999986432 45555554332211 1 12578999999765432
Q ss_pred cc------cchHHHHHHHHhhhcceeEEeecc
Q 024748 104 EG------QGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~------~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.. ..+...+......+|.++.++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 115 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR 115 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 11 111222333334458888888863
No 145
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=1.8e-07 Score=81.45 Aligned_cols=62 Identities=34% Similarity=0.467 Sum_probs=39.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
..+..++++|.||+|||||+|.|+|.... +++.|++|+... .+.+. ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC------------------CCEEEEECcCcCC
Confidence 34568999999999999999999998754 478899887764 23332 2589999999986
Q ss_pred Ccc
Q 024748 101 GAH 103 (263)
Q Consensus 101 ~~~ 103 (263)
...
T Consensus 178 ~~~ 180 (282)
T 1puj_A 178 PKF 180 (282)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.46 E-value=5.2e-08 Score=80.61 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=34.5
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CccceeeeCCcc
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDER 72 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~---p~~G~i~~~g~~ 72 (263)
.++|+++||+|+||||||||+++|+|+. . +..|.|..+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~-----------~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL-----------SAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH-----------HHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH-----------hhcCCceEEEecCCCc
Confidence 5789999999999999999999999984 4 347788877654
No 147
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.46 E-value=2.8e-08 Score=81.50 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
|++++|+|+||||||||+++|+|.. . +.| +.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~-----------~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL-----------K-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH-----------H-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc-----------c-cCC-EEEcCEec
Confidence 6899999999999999999999994 5 778 77766543
No 148
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.45 E-value=2.7e-07 Score=73.88 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.+++........+..+.......+.+++.. ..+.++|++|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---- 71 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQER---- 71 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSGG----
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHH----
Confidence 589999999999999999999876443333333333333344444321 2588999998432
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 72 ---~~~~~~~~~~~~d~~i~v~d~ 92 (186)
T 2bme_A 72 ---FRSVTRSYYRGAAGALLVYDI 92 (186)
T ss_dssp ---GHHHHHTTSTTCSEEEEEEET
T ss_pred ---HHHHHHHHHhcCCEEEEEEEC
Confidence 222334456778988888876
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.44 E-value=3.5e-08 Score=86.84 Aligned_cols=40 Identities=33% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--Cccceeee---CCcc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNI---PDER 72 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~--p~~G~i~~---~g~~ 72 (263)
..|+++||+|+||||||||+++|+|+. . |+.|.|.+ +|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l-----------~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL-----------SRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH-----------TTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-----------hhCCCCCeEEEEecCCcc
Confidence 788999999999999999999999983 5 78898888 6643
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.44 E-value=4.1e-07 Score=78.46 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=38.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------ccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~------~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
..++|+|.+|+|||||+|.|++......++| ..|+..+.....+... .....++++||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECCCc
Confidence 4799999999999999999999876655553 3334443333333210 11136899999999
Q ss_pred ccC
Q 024748 99 VRG 101 (263)
Q Consensus 99 ~~~ 101 (263)
...
T Consensus 76 ~d~ 78 (274)
T 3t5d_A 76 GDA 78 (274)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.43 E-value=5.8e-08 Score=89.18 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|+.|+|||||+|.|++..... ++++++|+.+....+.+.+. ..+.++||+|+.....
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDVGE 98 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcccc
Confidence 589999999999999999999987643 78899999988887777542 1589999999976544
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+..........++.+|.++.|+|+
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 3333445566777889999999987
No 152
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.43 E-value=2.9e-07 Score=72.25 Aligned_cols=82 Identities=26% Similarity=0.267 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|+|||||++.+++........|..+.......+.+++.. ..+.++|++|......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~- 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFRT- 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTSC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhhh-
Confidence 479999999999999999999875433333333322223333443321 2578899998543221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.++++
T Consensus 68 ---~---~~~~~~~~d~~i~v~d~ 85 (170)
T 1g16_A 68 ---I---TTAYYRGAMGIILVYDI 85 (170)
T ss_dssp ---C---CHHHHTTEEEEEEEEET
T ss_pred ---h---HHHHhccCCEEEEEEEC
Confidence 1 12334678988888876
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.43 E-value=3.7e-07 Score=79.88 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
-.|+|+|++|||||||+|.|+|...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4899999999999999999999865
No 154
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.42 E-value=3.3e-07 Score=74.31 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|+|||||++.|++........+..+.......+.+++.. ..+.++|++|...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~---- 87 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQER---- 87 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGG----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHH----
Confidence 589999999999999999999875332222222222223334443321 2588999998432
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 88 ---~~~~~~~~~~~~d~iilV~D~ 108 (192)
T 2il1_A 88 ---FNSITSAYYRSAKGIILVYDI 108 (192)
T ss_dssp ---GHHHHHHHHHHCSEEEEEEET
T ss_pred ---HHHHHHHHhcCCCEEEEEEEC
Confidence 222234456789999999886
No 155
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.42 E-value=3.5e-07 Score=72.44 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.+++........|..+.......+.+++.. ..+.++|++|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~---- 68 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTMQIWDTAGQER---- 68 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEE---------------EEEEEEECCCCGG----
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEeCCCchh----
Confidence 479999999999999999999765322222222222222233333321 2588999998432
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 69 ---~~~~~~~~~~~~~~~i~v~d~ 89 (177)
T 1wms_A 69 ---FRSLRTPFYRGSDCCLLTFSV 89 (177)
T ss_dssp ---GHHHHGGGGTTCSEEEEEEET
T ss_pred ---hhhhHHHHHhcCCEEEEEEEC
Confidence 122233445678888888876
No 156
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.42 E-value=7.9e-08 Score=84.58 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
.|++++|+|+||||||||+++|+|+. .|+.|.|.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll-----------~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY-----------QNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-----------HTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-----------HhcCCEEEEEeecC
Confidence 68999999999999999999999994 78899999887654
No 157
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.42 E-value=3e-08 Score=87.38 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=26.9
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee
Q 024748 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI 68 (263)
Q Consensus 18 ~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~ 68 (263)
+..+.+|++++|+|+||||||||+|+|+|.. .|..|.|.+
T Consensus 167 L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~G~I~~ 206 (307)
T 1t9h_A 167 IIPHFQDKTTVFAGQSGVGKSSLLNAISPEL-----------GLRTNEISE 206 (307)
T ss_dssp TGGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHhcccc-----------cccccceee
Confidence 4567789999999999999999999999984 778888876
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.42 E-value=1e-07 Score=83.77 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=33.5
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee---CCcc
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDER 72 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~---~g~~ 72 (263)
..+..+-.|++++|+|+||||||||+|+|+ . ..|..|.|.+ .|+.
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~-----------~~~~~G~i~~~~~~G~~ 204 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT-G-----------EELRTQEVSEKTERGRH 204 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-S-----------CCCCCSCC---------
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH-H-----------hhCcccccccccCCCCC
Confidence 344556679999999999999999999999 7 3788898888 6654
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.42 E-value=2.3e-08 Score=99.97 Aligned_cols=34 Identities=21% Similarity=0.031 Sum_probs=30.4
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHH
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L 44 (263)
....+.++..+..|++++|+||||||||||+|++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 3455678888899999999999999999999999
No 160
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.42 E-value=2.5e-07 Score=75.80 Aligned_cols=85 Identities=25% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+|+|+|++|||||||++.|++........+..+.......+.+++.. ..+.++|++|....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQERF 82 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 445799999999999999999999875433333333333333344444422 25889999995432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.. + ....++.+|.++.++++
T Consensus 83 ~~----~---~~~~~~~~d~ii~v~d~ 102 (213)
T 3cph_A 83 RT----I---TTAYYRGAMGIILVYDV 102 (213)
T ss_dssp TC----C---CHHHHTTCSEEEEEEET
T ss_pred HH----H---HHHHhccCCEEEEEEEC
Confidence 21 1 12344678999998886
No 161
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.41 E-value=4.1e-07 Score=73.50 Aligned_cols=85 Identities=27% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
..-.+++|+|++|||||||++.+++........+..+.......+.+++.. ..+.++|++|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQESF 83 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGGGT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 334689999999999999999999875433222222322333344444422 25889999985432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.. + ....++.+|.++.++++
T Consensus 84 ~~----~---~~~~~~~~d~ii~v~d~ 103 (191)
T 2a5j_A 84 RS----I---TRSYYRGAAGALLVYDI 103 (191)
T ss_dssp SC----C---CHHHHTTCSEEEEEEET
T ss_pred hh----h---HHHHhccCCEEEEEEEC
Confidence 21 1 12334678998888876
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.41 E-value=1.4e-07 Score=76.19 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCccce
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~-~-~~~~~~t~~p~~G~ 65 (263)
+|..++|+||||||||||+++|++.... . ...+.+|+.|..|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 5789999999999999999999997542 2 34566777777664
No 163
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.41 E-value=1.8e-07 Score=75.54 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-CC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLA-IP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~-~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
-.+++|+|++|||||||+|.|++.. .. .++.+++|...... .++ ..+.++|++|+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~------------------~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN------------------DELHFVDVPGYGFA 82 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET------------------TTEEEEECCCBCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EEC------------------CcEEEEECCCCCcc
Confidence 4689999999999999999999874 22 24445544433211 111 25899999997654
Q ss_pred cccc---c---chHHHHHHHHhhhcceeEEeecc
Q 024748 102 AHEG---Q---GLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~---~---~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.... . .+...+......+|.++.++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 116 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLR 116 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECC
Confidence 3211 0 11122222223348888888863
No 164
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.41 E-value=6e-07 Score=80.49 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
.+.+.++..++ .|+|+|.+|||||||+|+|+|...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 35555666666 999999999999999999999653
No 165
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.40 E-value=3.1e-07 Score=71.92 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.|++........+..+.......+.+++.. ..+.++|++|......
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 69 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFDA- 69 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTTC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHHH-
Confidence 579999999999999999999865322222222222222333333321 3688999998543221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.++++
T Consensus 70 ---~---~~~~~~~~d~~i~v~d~ 87 (168)
T 1z2a_A 70 ---I---TKAYYRGAQACVLVFST 87 (168)
T ss_dssp ---C---CHHHHTTCCEEEEEEET
T ss_pred ---H---HHHHhcCCCEEEEEEEC
Confidence 1 12334678988888876
No 166
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.40 E-value=2.7e-07 Score=81.13 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
.+.+++|+|.+|||||||++.+++..... ++++++|+....+.+.+.+. ..+.++|++|....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~----------------~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----------------MTLNLWDCGGQDVF 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT----------------EEEEEEEECCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc----------------eEEEEEECCCcHHH
Confidence 35689999999999999999998875444 56888888888887776431 36889999986432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
... .........++.+|.++.|+|+.+.
T Consensus 66 ~~~--~~~~~~~~~~~~ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 66 MEN--YFTKQKDHIFQMVQVLIHVFDVEST 93 (307)
T ss_dssp HHH--HHTTTHHHHHTTCSEEEEEEETTCS
T ss_pred hhh--hhhhHHHHHhccCCEEEEEEECCCh
Confidence 100 0001122344678999999998543
No 167
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.40 E-value=5.7e-07 Score=73.46 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=54.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|++|.......
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERFRTI 73 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHHHHH
Confidence 589999999999999999999876443333333333333445554432 25889999985432211
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
....++.+|.++.++++.
T Consensus 74 -------~~~~~~~~d~vilv~d~~ 91 (206)
T 2bcg_Y 74 -------TSSYYRGSHGIIIVYDVT 91 (206)
T ss_dssp -------CGGGGTTCSEEEEEEETT
T ss_pred -------HHHhccCCCEEEEEEECc
Confidence 123346788888888863
No 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.39 E-value=3.4e-07 Score=74.72 Aligned_cols=83 Identities=25% Similarity=0.233 Sum_probs=54.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|.+|||||||++.++|........|.++.....+.+.+++.. ..+.++|++|.....
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~~~-- 86 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQGDAG-- 86 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCSGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCccch--
Confidence 589999999999999999998765444444555555455566665532 257788988754311
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
..+. ...++.+|+++.+.+.
T Consensus 87 -~~~~---~~~~~~~d~~ilv~d~ 106 (195)
T 3cbq_A 87 -GWLR---DHCLQTGDAFLIVFSV 106 (195)
T ss_dssp -HHHH---HHHHHHCSEEEEEEET
T ss_pred -hhhH---HHhhccCCEEEEEEEC
Confidence 0111 1234678988888876
No 169
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.39 E-value=2.9e-07 Score=72.35 Aligned_cols=82 Identities=22% Similarity=0.172 Sum_probs=48.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++........|..+.......+.+++.. ..+.++|++|......
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~- 70 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKR---------------VNLAIWDTAGQERFHA- 70 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCE---------------EEEEEEECCCC------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCcHhhhh-
Confidence 589999999999999999999775332222222222222334443321 2578889998532211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 71 ------~~~~~~~~~d~~i~v~d~ 88 (170)
T 1z08_A 71 ------LGPIYYRDSNGAILVYDI 88 (170)
T ss_dssp --------CCSSTTCSEEEEEEET
T ss_pred ------hHHHHhccCCEEEEEEEC
Confidence 111234677888888775
No 170
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.39 E-value=1.3e-07 Score=85.40 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhh
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~-------~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~ 95 (263)
.+..++++|.+|+|||||+|.|+|.. ..++++|++|+.+.... +. ..+.++||
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDt 218 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD------------------EESSLYDT 218 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS------------------SSCEEEEC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec------------------CCeEEEeC
Confidence 46789999999999999999999863 12378888887655432 21 24789999
Q ss_pred hccccCcccccchHHHHHHH---HhhhcceeEEeec
Q 024748 96 AGLVRGAHEGQGLGNSFLSH---IRAVDGIFHVLRA 128 (263)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~---~~~~d~~l~vv~~ 128 (263)
||+.........+....+.. .+..+..+.+++.
T Consensus 219 PG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 219 PGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp CCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred CCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence 99986543222233333332 2445555555544
No 171
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.38 E-value=5.2e-07 Score=73.53 Aligned_cols=84 Identities=24% Similarity=0.243 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|++|+|||||++.|++........+..+.......+.+++.. ..+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERFQS 72 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGGSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 3589999999999999999999875433222322223333334443321 2588999998543221
Q ss_pred cccchHHHHHHHHhhhcceeEEeecc
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.. ...++.+|.++.++++.
T Consensus 73 ~~-------~~~~~~~d~~i~v~d~~ 91 (207)
T 1vg8_A 73 LG-------VAFYRGADCCVLVFDVT 91 (207)
T ss_dssp SC-------CGGGTTCSEEEEEEETT
T ss_pred hH-------HHHHhCCcEEEEEEECC
Confidence 11 12346788888888863
No 172
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.38 E-value=7.3e-07 Score=70.52 Aligned_cols=83 Identities=25% Similarity=0.226 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-.+++|+|.+|||||||++.|++........+..+.......+.+++.. ..+.++|++|....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~-- 77 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERF-- 77 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEE---------------EEEEEEECTTGGGT--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeE---------------EEEEEEECCCChHh--
Confidence 3689999999999999999999875322111111111112223333221 25889999984321
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++++
T Consensus 78 -----~~~~~~~~~~~d~~i~v~d~ 97 (179)
T 1z0f_A 78 -----RAVTRSYYRGAAGALMVYDI 97 (179)
T ss_dssp -----CHHHHHHHHTCSEEEEEEET
T ss_pred -----hhhHHHHhccCCEEEEEEeC
Confidence 12234456788999999886
No 173
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.38 E-value=3.4e-07 Score=73.93 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-.+|+|+|++|||||||++.|++........+..+.......+.+.+. ...+.++|++|.....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~- 88 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA---------------AVKAQIWDTAGLERYR- 88 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTE---------------EEEEEEEEESCCCTTC-
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEeCCCchhhh-
Confidence 358999999999999999999987533211111111111112222221 1358899999975422
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+ ....++.+|.++.++++
T Consensus 89 ---~~---~~~~~~~~d~vi~v~D~ 107 (193)
T 2oil_A 89 ---AI---TSAYYRGAVGALLVFDL 107 (193)
T ss_dssp ---TT---HHHHHTTCCEEEEEEET
T ss_pred ---hh---hHHHhccCCEEEEEEEC
Confidence 11 22345678988888876
No 174
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.38 E-value=6.8e-08 Score=91.10 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=44.4
Q ss_pred CCCcCCccc-ccCCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 11 APAERPILG-RFSSHLKIGIVGLPNVGKSTLFNT--LTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 11 ~~~~~~~~~-~i~~g~~vgivG~nGaGKSTLl~~--L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
.++...+++ .+++|++++|+|+||||||||+++ ++|+ ..|..|.|++.|+.
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-----------~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------IEFDEPGVFVTFEE 78 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESSS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-----------HhCCCCEEEEEEeC
Confidence 456777887 999999999999999999999999 6798 46788999998765
No 175
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.37 E-value=7.3e-07 Score=69.56 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++... ...++.++.......+.+++.. ..+.++|++|....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~--- 65 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY--- 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---C---
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcchh---
Confidence 5799999999999999999998652 1233333222222233333321 25889999985321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++++
T Consensus 66 ----~~~~~~~~~~~d~~i~v~d~ 85 (168)
T 1u8z_A 66 ----AAIRDNYFRSGEGFLCVFSI 85 (168)
T ss_dssp ----HHHHHHHHHHCSEEEEEEET
T ss_pred ----HHHHHHHhhcCCEEEEEEEC
Confidence 12223345778998888876
No 176
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.37 E-value=4.3e-07 Score=71.37 Aligned_cols=83 Identities=24% Similarity=0.185 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.+++........+..|.......+.+++.. ..+.++|++|.......
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE---------------EEEEEECCCCC------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccchh
Confidence 378999999999999999999875444333334444444555555432 35778899886542210
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+. ...++.+|.++.+++.
T Consensus 68 ---~~---~~~~~~~d~~i~v~d~ 85 (169)
T 3q85_A 68 ---LQ---DHCLQTGDAFLIVFSV 85 (169)
T ss_dssp --------CHHHHHCSEEEEEEET
T ss_pred ---hh---hhhhccCCEEEEEEEC
Confidence 11 1124568888888876
No 177
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.37 E-value=4.2e-07 Score=72.14 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+++|++|||||||++.+++........|..+.......+.+++. ....+.++|++|.....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~~~-- 72 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD--------------KVATMQVWDTAGQERFQ-- 72 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSS--------------CCEEEEEECCC--------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCC--------------cEEEEEEEECCCChHhh--
Confidence 58999999999999999999987533222233333333334444321 12357899999843211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 73 -----~~~~~~~~~~d~~i~v~d~ 91 (182)
T 1ky3_A 73 -----SLGVAFYRGADCCVLVYDV 91 (182)
T ss_dssp ---------CCSTTCCEEEEEEET
T ss_pred -----hhhHHHhhcCCEEEEEEEC
Confidence 1122334678888888875
No 178
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.37 E-value=1.2e-07 Score=89.07 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=39.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCc
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~ 71 (263)
..++..+..|..++|+|+||||||||+++|+|+ +.|+.|.|++.|.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~-----------i~~~~giitied~ 296 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF-----------IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG-----------SCTTCCEEEEESS
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-----------CCCCCCEEEEcCc
Confidence 445667789999999999999999999999999 4788888888764
No 179
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.36 E-value=5.8e-07 Score=72.39 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-.+|+|+|++|||||||++.|++........+..+.......+.+.+. ...+.++|++|......
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~~ 86 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK---------------RIKLQIWDTAGQERYRT 86 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTE---------------EEEEEEEECCSCCSSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCe---------------EEEEEEEeCCCcHHHhh
Confidence 368999999999999999999987532211111111111122233221 13588999998543221
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ....++.+|.++.++++
T Consensus 87 ~-------~~~~~~~~d~ii~v~d~ 104 (189)
T 2gf9_A 87 I-------TTAYYRGAMGFLLMYDI 104 (189)
T ss_dssp S-------GGGGGTTCSEEEEEEET
T ss_pred h-------HHHhccCCCEEEEEEEC
Confidence 1 12345678888888876
No 180
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.36 E-value=6.1e-08 Score=86.87 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=36.8
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc----ce-eeeCCcc
Q 024748 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE----AR-VNIPDER 72 (263)
Q Consensus 18 ~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~----G~-i~~~g~~ 72 (263)
.+.++.|.+++|+|+||||||||++.|++... .+|+. |. ++++++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~---------~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---------LPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT---------SCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc---------cchhcCCCCCeEEEEeCCC
Confidence 37899999999999999999999999999841 14454 56 7777654
No 181
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.36 E-value=7.3e-07 Score=70.85 Aligned_cols=82 Identities=20% Similarity=0.103 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|+|||||++.+++........+..+.......+.+++.. ..+.++|++|.....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 75 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT---------------VKFEIWDTAGQERYH-- 75 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEE---------------EEEEEEECCCSGGGG--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCChhhh--
Confidence 589999999999999999999875432221211111112233333221 358899999853221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 76 -----~~~~~~~~~~d~~i~v~d~ 94 (181)
T 2efe_B 76 -----SLAPMYYRGAAAAIIVFDV 94 (181)
T ss_dssp -----GGTHHHHTTCSEEEEEEET
T ss_pred -----hhhHHHhccCCEEEEEEEC
Confidence 1122345678998888876
No 182
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=5.2e-07 Score=71.65 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=49.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~-~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|||||||++.+++...... ..+.++.......+.+++.. ..+.++|++|.....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~- 74 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERFR- 74 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHHH-
Confidence 5899999999999999999998754321 12222222222233343321 257889999853221
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 75 ------~~~~~~~~~~d~ii~v~d~ 93 (180)
T 2g6b_A 75 ------SVTHAYYRDAHALLLLYDV 93 (180)
T ss_dssp ----------CCGGGCSEEEEEEET
T ss_pred ------HHHHHHccCCCEEEEEEEC
Confidence 1223345778988888876
No 183
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.35 E-value=9.5e-07 Score=71.88 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.|++........+..+.......+.+++. ...+.++|++|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---- 69 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK---------------RIKLQIWDTAGLER---- 69 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGG----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCe---------------EEEEEEEECCCchh----
Confidence 58999999999999999999987532211111111111112222221 13688999998642
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
........++.+|.++.++++.
T Consensus 70 ---~~~~~~~~~~~~d~ii~v~d~~ 91 (203)
T 1zbd_A 70 ---YRTITTAYYRGAMGFILMYDIT 91 (203)
T ss_dssp ---GHHHHHTTGGGCSEEEEEEETT
T ss_pred ---hcchHHHhhcCCCEEEEEEECc
Confidence 1222344567889999988863
No 184
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.35 E-value=8.4e-08 Score=86.29 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCcccccCC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc----ceeee
Q 024748 15 RPILGRFSS--HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE----ARVNI 68 (263)
Q Consensus 15 ~~~~~~i~~--g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~----G~i~~ 68 (263)
.-++..+.+ |++++|+|+||||||||+++|+|+. .|.. |.+.+
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-----------~~~~~~e~G~i~i 207 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-----------NTTSAWEYGREFV 207 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-----------TCEEECCTTHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-----------CCCcchhhHHHHH
Confidence 346777888 9999999999999999999999995 6666 76655
No 185
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.34 E-value=2.2e-07 Score=76.55 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=52.8
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCccee
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~ 91 (263)
|..|........-.+|+|+|++|||||||++.|++........+..+.......+.+++..... . ........+.
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l~ 87 (217)
T 2f7s_A 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG--S---SGKAFKVHLQ 87 (217)
T ss_dssp --------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEE
T ss_pred CcCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccc--c---ccCceeEEEE
Confidence 4444444444445689999999999999999999864211100111111111122232210000 0 0000123588
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
++|++|... ........++.+|.++.++++.
T Consensus 88 l~Dt~G~~~-------~~~~~~~~~~~~d~iilV~D~~ 118 (217)
T 2f7s_A 88 LWDTAGQER-------FRSLTTAFFRDAMGFLLMFDLT 118 (217)
T ss_dssp EEEEESHHH-------HHHHHHHHHTTCCEEEEEEETT
T ss_pred EEECCCcHh-------HHhHHHHHhcCCCEEEEEEECc
Confidence 999998422 2223345567899999998873
No 186
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.34 E-value=6.6e-07 Score=72.13 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
..+|+|+|++|||||||++.|++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 36899999999999999999998754
No 187
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.34 E-value=2.7e-07 Score=82.80 Aligned_cols=37 Identities=27% Similarity=0.194 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CccceeeeC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIP 69 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~-p~~G~i~~~ 69 (263)
..|++++|+|+||||||||+|+|+|.. . |..|.|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ-----------NEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS-----------SCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc-----------cccccCCcccc
Confidence 368999999999999999999999994 5 778887765
No 188
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=5.3e-07 Score=72.58 Aligned_cols=83 Identities=29% Similarity=0.300 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.|++........+..+.......+.+++.. ..+.++|++|......
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~- 79 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFRT- 79 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhhh-
Confidence 589999999999999999999875332222222222222233333321 3588899998543221
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
+ ....++.+|.++.++++.
T Consensus 80 ---~---~~~~~~~~d~ii~v~d~~ 98 (195)
T 1x3s_A 80 ---L---TPSYYRGAQGVILVYDVT 98 (195)
T ss_dssp ---S---HHHHHTTCCEEEEEEETT
T ss_pred ---h---hHHHhccCCEEEEEEECc
Confidence 1 223457789999998863
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.34 E-value=1.5e-07 Score=82.66 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHH---Hh-hhcCCC-CCCCcceehhhhhccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---LC-QLFKPK-SAVPAFLEIHDIAGLV 99 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~---l~-~~~~~~-~~~~~~l~~~d~~g~~ 99 (263)
..++|||+||||||||+|+|+|.. ..|..| +.+.|..+.. .. ..+.++ ......++++|++|++
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~----------~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD----------LYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----------ccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 356999999999999999999973 245556 4444433211 00 012222 2334579999999985
Q ss_pred c
Q 024748 100 R 100 (263)
Q Consensus 100 ~ 100 (263)
.
T Consensus 88 ~ 88 (301)
T 2qnr_A 88 D 88 (301)
T ss_dssp -
T ss_pred h
Confidence 4
No 190
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.34 E-value=9e-07 Score=72.02 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|++|||||||++.+++........+..+.......+.+++.. ..+.++|++|...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~--- 89 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQER--- 89 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEE---------------EEEEEEECTTCTT---
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCCcc---
Confidence 4699999999999999999999875321111111111112233333321 2588999998532
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 90 ----~~~~~~~~~~~~d~iilv~d~ 110 (199)
T 2p5s_A 90 ----FRSIAKSYFRKADGVLLLYDV 110 (199)
T ss_dssp ----CHHHHHHHHHHCSEEEEEEET
T ss_pred ----hhhhHHHHHhhCCEEEEEEEC
Confidence 122334456789999999886
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.34 E-value=1.2e-07 Score=84.39 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.1
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
.++|++++|+|+||||||||++.|+|. ..|..|.|.+.|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~-----------l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW-----------LKNHGFSVVIAASDT 167 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHhcCCEEEEEeecc
Confidence 367999999999999999999999999 478899998877654
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=83.58 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.+++|+|+||||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999984
No 193
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.33 E-value=1e-06 Score=71.59 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.+++... ...++.++.......+.+++.. ..+.++|++|....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~--- 75 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY--- 75 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhhh---
Confidence 5899999999999999999997652 2334444333333334444321 25889999985421
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.......++.+|.++.++++.
T Consensus 76 ----~~~~~~~~~~~~~~i~v~d~~ 96 (206)
T 2bov_A 76 ----AAIRDNYFRSGEGFLCVFSIT 96 (206)
T ss_dssp ----HHHHHHHHHHCSEEEEEEETT
T ss_pred ----HHHHHHHHhhCCEEEEEEECC
Confidence 122233456788888888763
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.33 E-value=3.4e-07 Score=75.51 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCccce
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~-~-~~~~~~t~~p~~G~ 65 (263)
-.|..++|+||+|||||||++.|++.... . ...+.||+.|..|.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 46889999999999999999999988652 2 56788999999887
No 195
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.33 E-value=6.5e-07 Score=71.55 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||+|.|++... ...++.++.......+.+++.. ..+.++|++|.....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~-- 66 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS-- 66 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---C--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHH--
Confidence 5799999999999999999997652 2344444433334444444422 257789999854322
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+.. ..++.+|.++.+++.
T Consensus 67 --~~~~---~~~~~~~~~i~v~d~ 85 (189)
T 4dsu_A 67 --AMRD---QYMRTGEGFLCVFAI 85 (189)
T ss_dssp --TTHH---HHHHHCSEEEEEEET
T ss_pred --HHHH---HHHhcCCEEEEEEEC
Confidence 1222 234668888888876
No 196
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.31 E-value=4.1e-07 Score=74.32 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.-.+|+|+|++|||||||++.|++........+..+.......+.+++.. ..+.++|++|.....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~ 88 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERFR 88 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhHH
Confidence 34689999999999999999999875433333333333333344444321 368899999854321
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. + ....++.+|.++.++++
T Consensus 89 ~----~---~~~~~~~~d~~i~v~d~ 107 (200)
T 2o52_A 89 S----V---TRSYYRGAAGALLVYDI 107 (200)
T ss_dssp C----C---CHHHHTTCSEEEEEEET
T ss_pred H----H---HHHHhccCCEEEEEEEC
Confidence 1 1 12345678998888876
No 197
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.31 E-value=1e-06 Score=70.50 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=50.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---cceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~---~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
.+|+|+|++|||||||++.|++........ .|...+ ...+.+.+.... ... ......+.++|++|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~l~Dt~G~~~- 82 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFI--TTVGIDFREKRVVYRANGPDG----AVG--RGQRIHLQLWDTAGLER- 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEECTTSCCC----SSC--CCEEEEEEEEEECCSGG-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcc--cccceeeeeEEEEEecCCccc----ccc--cCcEEEEEEEeCCCcHH-
Confidence 589999999999999999999864321111 111111 112222221000 000 00023688999998632
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 83 ------~~~~~~~~~~~~d~~i~v~d~ 103 (195)
T 3bc1_A 83 ------FRSLTTAFFRDAMGFLLLFDL 103 (195)
T ss_dssp ------GHHHHHHTTTTCSEEEEEEET
T ss_pred ------HHHHHHHHHcCCCEEEEEEEC
Confidence 223344556789999999886
No 198
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.31 E-value=2e-07 Score=82.31 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=26.7
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++.|+++||+|+||||||||+++|+|+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 7899999999999999999999999984
No 199
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.31 E-value=7.9e-07 Score=72.26 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=49.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
......+|+|+|++|+|||||++.+++... .+.++.++.......+.+++.. ..+.++|++|..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQD 79 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEE---------------EEEEEEECCCST
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCH
Confidence 334557999999999999999999998642 2334444333333334444321 257799999875
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
..... . ...++.+|.++.++++
T Consensus 80 ~~~~~----~---~~~~~~~~~~i~v~d~ 101 (201)
T 2q3h_A 80 EFDKL----R---PLCYTNTDIFLLCFSV 101 (201)
T ss_dssp TCSSS----G---GGGGTTCSEEEEEEET
T ss_pred HHHHH----h---HhhcCCCcEEEEEEEC
Confidence 43221 1 1234678888888876
No 200
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.31 E-value=1.2e-06 Score=68.56 Aligned_cols=82 Identities=22% Similarity=0.136 Sum_probs=48.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|+|||||++.+++........+..+.......+.+++. ...+.++|++|.....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~-- 69 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT---------------TVKFEIWDTAGQERYH-- 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGG--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCcHHhh--
Confidence 47999999999999999999976432111111000011112222221 1357899999854321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 70 -----~~~~~~~~~~d~~i~v~d~ 88 (170)
T 1r2q_A 70 -----SLAPMYYRGAQAAIVVYDI 88 (170)
T ss_dssp -----GGHHHHHTTCSEEEEEEET
T ss_pred -----hhhHHhccCCCEEEEEEEC
Confidence 1123345778999888876
No 201
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.31 E-value=7.5e-07 Score=71.87 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
-.+++|+|++|||||||++.+++...... ..|+.+ .+.+++.. ..+.++|++|..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQE------ESPEGGRFKKEIVVDGQS---------------YLLLIRDEGGPP 78 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCC------CCTTCEEEEEEEEETTEE---------------EEEEEEECSSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC------cCCCcceEEEEEEECCEE---------------EEEEEEECCCCh
Confidence 36999999999999999998886542211 122233 44444432 257778988753
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.. . .++.+|.++.+++.
T Consensus 79 ~~-------~-----~~~~~~~~i~v~d~ 95 (184)
T 3ihw_A 79 EL-------Q-----FAAWVDAVVFVFSL 95 (184)
T ss_dssp CH-------H-----HHHHCSEEEEEEET
T ss_pred hh-------h-----eecCCCEEEEEEEC
Confidence 21 1 44678888888876
No 202
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.31 E-value=1.3e-06 Score=69.56 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.|++... ...++.++.......+.+++.. ..+.++|++|....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~--- 79 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY--- 79 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC---
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCccc---
Confidence 6899999999999999999997652 2233333322222333333321 25889999985421
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++++
T Consensus 80 ----~~~~~~~~~~~d~~i~v~d~ 99 (187)
T 2a9k_A 80 ----AAIRDNYFRSGEGFLCVFSI 99 (187)
T ss_dssp ----HHHHHHHHHHCSEEEEEEET
T ss_pred ----HHHHHHHhccCCEEEEEEEC
Confidence 12223445778998888876
No 203
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.31 E-value=6.5e-07 Score=72.15 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=51.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+|+|+|.+|||||||++.+++.......+. .|+......+.+++ ..+.++|++|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRY 80 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSS-----------------CEEEEEEECCSTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECC-----------------EEEEEEECCCCHHH
Confidence 3457999999999999999999998753222211 22222333333332 36889999985432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.. .....++.+|.++.++++
T Consensus 81 ~~-------~~~~~~~~~d~ii~v~d~ 100 (190)
T 2h57_A 81 RN-------LWEHYYKEGQAIIFVIDS 100 (190)
T ss_dssp GG-------GGGGGGGGCSEEEEEEET
T ss_pred HH-------HHHHHHhcCCEEEEEEEC
Confidence 11 112345788999998886
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.30 E-value=4.6e-07 Score=74.94 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCccce
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~-~-~~~~~~t~~p~~G~ 65 (263)
++|..++|+||||||||||+++|++.... . ...+.+|+.|..|.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 47899999999999999999999998753 2 45566777777664
No 205
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.30 E-value=1e-06 Score=69.07 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=48.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc------eeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA------RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G------~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
.+++++|++|||||||+|.+++...... ..|..| .+.+.+. ...+.++|++|.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPN------INPTIGASFMTKTVQYQNE---------------LHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT------CCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC------CCCceeEEEEEEEEEECCe---------------EEEEEEEcCCCc
Confidence 5899999999999999999998753211 122222 1222221 135889999986
Q ss_pred ccCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.... ......++.+|.++.++++
T Consensus 66 ~~~~-------~~~~~~~~~~~~~i~v~d~ 88 (170)
T 1z0j_A 66 ERFR-------ALAPMYYRGSAAAIIVYDI 88 (170)
T ss_dssp GGGG-------GGTHHHHTTCSEEEEEEET
T ss_pred hhhh-------cccHhhCcCCCEEEEEEEC
Confidence 4321 1112345678888888876
No 206
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.30 E-value=8.3e-07 Score=70.31 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.+++... ..+++.++.......+.+++.. ..+.++|++|.....
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~-- 71 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQEEFG-- 71 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTTTS--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 5899999999999999999998732 2334444333333334444321 358889999964322
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+.. ..++.+|.++.++++
T Consensus 72 --~~~~---~~~~~~d~~i~v~d~ 90 (181)
T 2fn4_A 72 --AMRE---QYMRAGHGFLLVFAI 90 (181)
T ss_dssp --CCHH---HHHHHCSEEEEEEET
T ss_pred --HHHH---HHHhhCCEEEEEEeC
Confidence 1222 234678888888876
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.29 E-value=3e-07 Score=74.55 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++++|+|+||||||||+++|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999984
No 208
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.29 E-value=1e-06 Score=70.58 Aligned_cols=54 Identities=31% Similarity=0.268 Sum_probs=39.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
+++|+|++|||||||++.+++.....+..|++|..+.. +.+ ..+.++|++|+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~-------------------~~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEW-------------------KNHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEE-------------------TTEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--Eec-------------------CCEEEEECCCccc
Confidence 68999999999999999999986554555655544322 111 1478999999754
No 209
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.28 E-value=2e-06 Score=66.91 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++.... ..+..++.......+.+++. ...+.++|++|....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~--- 64 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQF--- 64 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCE---------------EEEEEEEECCCchhh---
Confidence 47999999999999999999976432 12222211111222333332 124789999985321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.+++.
T Consensus 65 ----~~~~~~~~~~~~~~i~v~d~ 84 (167)
T 1kao_A 65 ----ASMRDLYIKNGQGFILVYSL 84 (167)
T ss_dssp ----HHHHHHHHHHCSEEEEEEET
T ss_pred ----HHHHHHHhccCCEEEEEEeC
Confidence 11222345778888888876
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.27 E-value=2.1e-06 Score=81.87 Aligned_cols=67 Identities=24% Similarity=0.169 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.+|+|+|++|+|||||+|.|+|....+ +++++|...+.|...+.- + .+. .....+.++||+|+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~-~--------~~~-~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCV-P--------HPK-KPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEE-E--------CSS-STTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeec-c--------ccc-CCCceEEEecCCCcCccc
Confidence 578999999999999999999987554 677888788888754310 0 000 012368999999998644
No 211
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.26 E-value=9.8e-08 Score=96.38 Aligned_cols=37 Identities=24% Similarity=0.122 Sum_probs=31.8
Q ss_pred CCCcCCcccccCC-------CcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 11 APAERPILGRFSS-------HLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 11 ~~~~~~~~~~i~~-------g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
....+.++..+.. |++++|+||||||||||+|++ |+.
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 4566777777776 899999999999999999999 873
No 212
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.26 E-value=1.9e-06 Score=81.75 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCccccCC-----ccceeeeCCc-------chHHHh---hhc-----
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP---AENFPFCTIEP-----NEARVNIPDE-------RFEWLC---QLF----- 80 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~---~~~~~~~t~~p-----~~G~i~~~g~-------~~~~l~---~~~----- 80 (263)
--+|+|+|.+|||||||+|.|+|...+ ++..|+||... ..|.+..+.. .+..+. ..|
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 369999999999999999999998764 46677664311 0111111110 000010 000
Q ss_pred ---CCCCCCCcceehhhhhccccCccc--ccc--hHHHHHHHHhhhcceeEEeeccC
Q 024748 81 ---KPKSAVPAFLEIHDIAGLVRGAHE--GQG--LGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 81 ---~~~~~~~~~l~~~d~~g~~~~~~~--~~~--~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.+. .+..++.++||+|+...... ... +.......++.+|+++.|+++..
T Consensus 145 ~~~~~~-~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 145 CAQLPN-QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp EEECCC-HHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred EEeccc-cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 000 00136899999999863221 111 22344556788999999999854
No 213
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.4e-06 Score=83.54 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCC-------------------------------CccccCCccceeeeCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENF-------------------------------PFCTIEPNEARVNIPD 70 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~-------------------------------~~~t~~p~~G~i~~~g 70 (263)
....+|+|+|++|+|||||++.|++....+... +++|+......+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 345799999999999999999999875433211 223333322222222
Q ss_pred cchHHHhhhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...++++|+||... +.......++.+|.++.|+++..
T Consensus 244 ----------------~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 244 ----------------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp ----------------SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred ----------------CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 13688999999632 34455666788999999999853
No 214
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.26 E-value=1.7e-06 Score=69.49 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhccc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~ 99 (263)
..+++|+|++|||||||++.+++... ....|+.| .+.+++ ..+.++|++|..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~-------~~~~~t~g~~~~~~~~~~-----------------~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDI-------SHITPTQGFNIKSVQSQG-----------------FKLNVWDIGGQR 71 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCC-------EEEEEETTEEEEEEEETT-----------------EEEEEEECSSCG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-------CcccCcCCeEEEEEEECC-----------------EEEEEEECCCCH
Confidence 46899999999999999999998632 12234444 222221 357889998853
Q ss_pred cCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ........++.+|.++.++|+
T Consensus 72 ~-------~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 72 K-------IRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp G-------GHHHHHHHHTTCSEEEEEEET
T ss_pred H-------HHHHHHHHhCCCCEEEEEEEC
Confidence 2 122233456789999999886
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.26 E-value=2.5e-07 Score=78.94 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=32.5
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCccceee
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVN 67 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~---G~~~~~~~~~~~t~~p~~G~i~ 67 (263)
.-..+|++++|+|+|||||||++++|+ |+. .++.|.+.
T Consensus 22 ~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-----------~~d~g~i~ 62 (252)
T 4e22_A 22 HMTAIAPVITVDGPSGAGKGTLCKALAESLNWR-----------LLDSGAIY 62 (252)
T ss_dssp -CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCE-----------EEEHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCC-----------cCCCCcee
Confidence 333678999999999999999999999 884 78888877
No 216
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.25 E-value=1.6e-06 Score=68.99 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.+++... .+.++.++.......+.+++.. ..+.++|++|.......
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 70 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDEYSIF 70 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCTTCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchhhhHH
Confidence 4899999999999999999996542 2333333333333344444422 25789999996543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ...++.+|.++.+++.
T Consensus 71 ~-------~~~~~~~~~~i~v~d~ 87 (181)
T 3t5g_A 71 P-------QTYSIDINGYILVYSV 87 (181)
T ss_dssp C-------GGGTTTCSEEEEEEET
T ss_pred H-------HHHHhcCCEEEEEEEC
Confidence 1 1223567888888776
No 217
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.24 E-value=3.9e-07 Score=88.73 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCc--------cceeee-CCc-------------------c
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPN--------EARVNI-PDE-------------------R 72 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~--------~G~i~~-~g~-------------------~ 72 (263)
..+.+|+|+|.+|+|||||+|+|+|..... +..|.|+ .+. ..++.+ +|. .
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~-~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTA-VLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTC-CCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCcc-ceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 467899999999999999999999987654 4455441 110 001111 111 1
Q ss_pred hHHHh-------------hhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 73 FEWLC-------------QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 73 ~~~l~-------------~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+..+. .++.|.......++++||||+..... ........++.+|+++.|+++..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTS
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCC
Confidence 11000 01112111113689999999875321 23445667788999999999853
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.24 E-value=1.5e-06 Score=70.91 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
-+++|+|++|||||||++.+++.... .+ ..|..++.+.+.+++ ..+.++|++|......
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~- 84 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAG-----------------MTFTTFDLGGHIQARR- 84 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT-----------------EEEEEEEECC----CC-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECC-----------------EEEEEEECCCcHhhHH-
Confidence 47999999999999999999986532 11 124455566666654 2578999998543221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.++|+
T Consensus 85 ---~---~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 85 ---V---WKNYLPAINGIVFLVDC 102 (198)
T ss_dssp ---G---GGGGGGGCSEEEEEEET
T ss_pred ---H---HHHHHhcCCEEEEEEEC
Confidence 1 11234678999999887
No 219
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=7.1e-07 Score=72.07 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
...-.+|+|+|++|+|||||++.+++........+..+.......+.+.+. ...+.++|++|...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK---------------RVKLQIWDTAGQER 84 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT---------------TEEEEEECHHHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCChHH
Confidence 344468999999999999999999986422111111111111122222221 13588999998432
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeec
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 85 -------~~~~~~~~~~~~d~~i~v~d~ 105 (191)
T 3dz8_A 85 -------YRTITTAYYRGAMGFILMYDI 105 (191)
T ss_dssp -------CHHHHHHHHTTCCEEEEEEET
T ss_pred -------HHHHHHHHHccCCEEEEEEEC
Confidence 122234456788999988876
No 220
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=70.62 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=48.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|+|||||++.+++........+..+.......+.+++.. ..+.++|++|...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~---- 90 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR---------------VKLQIWDTAGQER---- 90 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEE---------------EEEEEECCTTCGG----
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCcHh----
Confidence 589999999999999999999764321111111111112233333321 2688999998532
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++|+
T Consensus 91 ---~~~~~~~~~~~~d~iilv~D~ 111 (201)
T 2hup_A 91 ---FRTITQSYYRSANGAILAYDI 111 (201)
T ss_dssp ---GHHHHHHHHTTCSEEEEEEET
T ss_pred ---HHHHHHHHHhhCCEEEEEEEC
Confidence 122233456788999998876
No 221
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.23 E-value=2e-06 Score=69.60 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++.... .+ ..|..++.+.+.+++ ..+.++|++|......
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~- 82 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQARR- 82 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT-----------------EEEEEEECCCSGGGTT-
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC-----------------EEEEEEECCCCHHHHH-
Confidence 58999999999999999999986532 11 234455556666654 2578899998654221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.++|+
T Consensus 83 ---~---~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 83 ---L---WKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---S---GGGGCTTCCEEEEEEET
T ss_pred ---H---HHHHHhcCCEEEEEEEC
Confidence 1 11234678888888886
No 222
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.23 E-value=6.7e-07 Score=77.48 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
-.|+|+|.+|||||||+|.|+|...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 5899999999999999999999865
No 223
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.6e-06 Score=71.99 Aligned_cols=83 Identities=25% Similarity=0.240 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|+|||||++.|++........+..+.......+.+++.. ..+.++|++|.......
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERYRAI 78 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTTTCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccchhhh
Confidence 589999999999999999999876443322333333333344444321 25788999985432211
Q ss_pred ccchHHHHHHHHhhhcceeEEeecc
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
....++.+|.++.++++.
T Consensus 79 -------~~~~~~~~d~vilV~D~~ 96 (223)
T 3cpj_B 79 -------TSAYYRGAVGALIVYDIS 96 (223)
T ss_dssp -------CGGGTTTCCEEEEEEC-C
T ss_pred -------HHHHhccCCEEEEEEeCC
Confidence 112346778888887763
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.23 E-value=2.7e-07 Score=80.33 Aligned_cols=38 Identities=13% Similarity=-0.069 Sum_probs=34.7
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
-++...+++.+.+|++++|+|+||||||||++.|+|..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999983
No 225
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.22 E-value=2.2e-06 Score=66.92 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++.... ..+..++.......+.+++. ...+.++|++|.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~-- 65 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTEQFT-- 65 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSCSST--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCE---------------EEEEEEEECCChHHHH--
Confidence 47999999999999999999976422 12222211111112222221 1358899999964322
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+. ...++.+|.++.++++
T Consensus 66 --~~~---~~~~~~~d~~i~v~d~ 84 (167)
T 1c1y_A 66 --AMR---DLYMKNGQGFALVYSI 84 (167)
T ss_dssp --THH---HHHHHHCSEEEEEEET
T ss_pred --HHH---HHHhccCCEEEEEEEC
Confidence 122 2334678888888876
No 226
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.22 E-value=5.1e-07 Score=74.34 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.++|+++||+|+||||||||+++|+|..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999999973
No 227
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.22 E-value=4.5e-08 Score=82.61 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=30.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
.+.. ++++|+||||||||||+++|+|+ ..|+.|.|.++|..+
T Consensus 24 ~~~~-~~~~i~GpnGsGKSTll~~i~g~-----------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 24 DLDE-LVTTLSGGNGAGKSTTMAAFVTA-----------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp CHHH-HHHHHHSCCSHHHHHHHHHHHHH-----------HSCCTTTC-------
T ss_pred EEcC-cEEEEECCCCCCHHHHHHHHhcc-----------cccCCCeEEECCEEc
Confidence 3444 67899999999999999999999 488999999988665
No 228
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.20 E-value=2.1e-06 Score=69.37 Aligned_cols=80 Identities=20% Similarity=0.107 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~--~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.+|+|+|++|||||||++.+++..... .+..+.+.. ...+.+.+. ...+.++|++|.....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNE---------------LHKFLIWDTAGQERFH 86 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSS---------------EEEEEEEEECCSGGGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCE---------------EEEEEEEcCCCchhhH
Confidence 589999999999999999999875321 111111111 111222221 1358899999854321
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 87 -------~~~~~~~~~~d~iilV~d~ 105 (192)
T 2fg5_A 87 -------SLAPMYYRGSAAAVIVYDI 105 (192)
T ss_dssp -------GGTHHHHTTCSEEEEEEET
T ss_pred -------hhhHHhhccCCEEEEEEeC
Confidence 1122345678998888876
No 229
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.20 E-value=6e-07 Score=71.14 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++|+|++|||||||++.+++........|..+.......+.+++. ....+.++|++|.....
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~~Dt~G~~~~~-- 70 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN--------------LNVTLQIWDIGGQTIGG-- 70 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT--------------EEEEEEEEECTTCCTTC--
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC--------------CEEEEEEEECCCCcccc--
Confidence 58999999999999999999976421110111111222233344331 01368899999954322
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+ ....++.+|.++.++++
T Consensus 71 --~~---~~~~~~~~d~~i~v~d~ 89 (178)
T 2hxs_A 71 --KM---LDKYIYGAQGVLLVYDI 89 (178)
T ss_dssp --TT---HHHHHTTCSEEEEEEET
T ss_pred --ch---hhHHHhhCCEEEEEEEC
Confidence 11 12335788999999886
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.20 E-value=4.9e-07 Score=73.24 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+|++++|+|+||||||||+++|++
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Confidence 367999999999999999999986
No 231
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.20 E-value=5e-07 Score=82.82 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
.+|..++|+||||||||||+++|+|. +.|..|.|.+.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~-----------l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE-----------LNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH-----------HCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEEeccc
Confidence 67899999999999999999999998 47778888776543
No 232
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.19 E-value=1.6e-06 Score=70.64 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+|+|+|.+|||||||++.|++.... ..++.++.......+.+.+. ...+.++|++|....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD---------------EFHLHLVDTAGQDEY 85 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC-------------------CEEEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 34568999999999999999999987533 22222221111222222221 235789999985433
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
... ....++.+|.++.++++
T Consensus 86 ~~~-------~~~~~~~~d~~i~v~d~ 105 (201)
T 3oes_A 86 SIL-------PYSFIIGVHGYVLVYSV 105 (201)
T ss_dssp CCC-------CGGGTTTCCEEEEEEET
T ss_pred HHH-------HHHHHhcCCEEEEEEeC
Confidence 211 11234678888888876
No 233
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.19 E-value=1.2e-06 Score=70.18 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+++|.+|+|||||++.+++..... ...|.......+.+.+ ..+.++|++|.....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 79 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEE---EECCSSSSCEEEEETT-----------------EEEEEEEESSSGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCc---cCCcCceeeEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 45699999999999999999999875310 0011111122233322 358899999974322
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. .....++.+|.++.++|+
T Consensus 80 ~-------~~~~~~~~~d~ii~v~D~ 98 (181)
T 2h17_A 80 S-------SWNTYYTNTEFVIVVVDS 98 (181)
T ss_dssp C-------GGGGGGTTCCEEEEEEET
T ss_pred H-------HHHHHhccCCEEEEEEEC
Confidence 1 112345788999999886
No 234
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.19 E-value=8e-07 Score=72.63 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=25.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+.+|++++|+|+|||||||++++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999985
No 235
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.18 E-value=3.4e-06 Score=65.44 Aligned_cols=81 Identities=25% Similarity=0.259 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|||||||++.+++.... ..++.++.......+.+++. ...+.++|++|.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~-- 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS-- 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCSSCC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCE---------------EEEEEEEECCCchhhh--
Confidence 36999999999999999999976422 22222221111222333321 1257889999854321
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. .....++.+|.++.++++
T Consensus 66 --~---~~~~~~~~~~~~i~v~d~ 84 (166)
T 2ce2_X 66 --A---MRDQYMRTGEGFLCVFAI 84 (166)
T ss_dssp --H---HHHHHHHHCSEEEEEEET
T ss_pred --H---HHHHhhccCCEEEEEEEC
Confidence 1 122345678888888775
No 236
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.18 E-value=4.1e-06 Score=65.29 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
+++++|++|+|||||++.+++.... ...| |+......+.+. ...+.++|++|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~----- 56 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDK----- 56 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECS-----------------SCEEEEEECCCCGG-----
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEEC-----------------CEEEEEEEcCCChh-----
Confidence 6899999999999999999875421 1111 222222222221 13688999998642
Q ss_pred cchHHHHHHHHhhhcceeEEeec
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
........++.+|.++.++++
T Consensus 57 --~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 57 --IRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp --GHHHHHHHTTTCSEEEEEEET
T ss_pred --hHHHHHHHhccCCEEEEEEEC
Confidence 122223346788999998886
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.7e-06 Score=67.65 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+++|+|++|||||||++.|++..... ...+..|..+. . + ....+.++|++|.....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~------------~-----~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-D------------Y-----DGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C------------C-----CCTTCSEEEETTCCBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-e------------e-----cCCeEEEEECCCCchHH
Confidence 44689999999999999999999875211 00011111110 0 0 12368899999976533
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. .+...+...+..+|.++.++|+
T Consensus 106 ~---~~~~~~~~~~~~~~~~i~v~d~ 128 (193)
T 2ged_A 106 Y---KLSDYLKTRAKFVKGLIFMVDS 128 (193)
T ss_dssp C---CHHHHHHHHGGGEEEEEEEEET
T ss_pred H---HHHHHHHhhcccCCEEEEEEEC
Confidence 2 2233344445668999999886
No 238
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.18 E-value=2.9e-06 Score=67.51 Aligned_cols=81 Identities=21% Similarity=0.168 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|+|||||++.+++.... ..+..++.......+.+++.. ..+.++|++|.......
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 69 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDRL 69 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEE---------------EEEEEECCCCSGGGTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEE---------------EEEEEEECCCCHhHHHH
Confidence 58999999999999999999975421 222222222112233333321 35779999987532211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
....++.+|.++.++++
T Consensus 70 -------~~~~~~~~d~~i~v~d~ 86 (186)
T 1mh1_A 70 -------RPLSYPQTDVSLICFSL 86 (186)
T ss_dssp -------GGGGCTTCSEEEEEEET
T ss_pred -------HHHhccCCcEEEEEEEC
Confidence 11234678888888876
No 239
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.18 E-value=1.4e-06 Score=68.17 Aligned_cols=79 Identities=23% Similarity=0.178 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|||||||+|.++|..... ++.+++|.. ..+.+++.. ..+.++|++|......
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~i~D~~g~~~~~~ 64 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEE---------------ASLMVYDIWEQDGGRW 64 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEE---------------EEEEEEECC-------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEE---------------EEEEEEECCCCccchh
Confidence 479999999999999999999876432 333333332 223333322 3577889988543211
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.+++.
T Consensus 65 ----~---~~~~~~~~~~~i~v~d~ 82 (166)
T 3q72_A 65 ----L---PGHCMAMGDAYVIVYSV 82 (166)
T ss_dssp ---------------CCEEEEEEET
T ss_pred ----h---hhhhhhhCCEEEEEEEC
Confidence 1 11233667887777765
No 240
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.16 E-value=1.9e-06 Score=80.42 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=55.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
....+++|+|.+|+|||||++.|++.... . ...|+..+.+.+.+.+ ..+.++||+|....
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~--~~~T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-T--TIPTVGFNVETVTYKN-----------------VKFNVWDVGGQDKI 379 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-C--CCCCSSEEEEEEESSS-----------------CEEEEEEECCCGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-C--cCCccceeEEEEEeCC-----------------EEEEEEECCCcHHH
Confidence 34568999999999999999999987622 2 2235555555555433 35889999995332
Q ss_pred cccccchHHHHHHHHhhhcceeEEeecc
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.. .....++.+|.++.|+|+.
T Consensus 380 ~~-------~~~~~~~~ad~~i~V~D~~ 400 (497)
T 3lvq_E 380 RP-------LWRHYYTGTQGLIFVVDCA 400 (497)
T ss_dssp SG-------GGGGGGTTCCEEEEEEETT
T ss_pred HH-------HHHHHhccCCEEEEEEECc
Confidence 21 1234567899999999873
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.16 E-value=1.6e-06 Score=74.56 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~-~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.+++++|.||+|||||+|.|+|.... .++.|++|.... .+.+ ...+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~------------------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL------------------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC------------------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe------------------CCCEEEEECCCcccCc
Confidence 59999999999999999999998753 366677766542 2222 1358999999998654
No 242
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.16 E-value=4.1e-07 Score=72.68 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|+|||||++.+++........|..+.......+.+++.. ..+.++|++|......
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~- 72 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFRT- 72 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhhh-
Confidence 589999999999999999999764221111111211222233333321 3588999998543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 73 ------~~~~~~~~~d~~i~v~d~ 90 (183)
T 2fu5_C 73 ------ITTAYYRGAMGIMLVYDI 90 (183)
T ss_dssp -------CCTTTTTCSEEEEEEET
T ss_pred ------hHHHHHhcCCEEEEEEEC
Confidence 112234678888888876
No 243
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.16 E-value=3.5e-06 Score=68.68 Aligned_cols=94 Identities=20% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCcCCcccccCC-CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 12 PAERPILGRFSS-HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 12 ~~~~~~~~~i~~-g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
|..|......+. ..+|+|+|.+|+|||||++.+++...... +..++.......+.+++.. ..+
T Consensus 12 ~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~l 75 (201)
T 2gco_A 12 SGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQ---------------VEL 75 (201)
T ss_dssp TTCCC-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEE---------------EEE
T ss_pred CCcccCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEE---------------EEE
Confidence 334444444433 25899999999999999999998653322 2122111222233443321 257
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.++|++|...... + ....++.+|.++.++++
T Consensus 76 ~i~Dt~G~~~~~~----~---~~~~~~~~d~~i~v~d~ 106 (201)
T 2gco_A 76 ALWDTAGQEDYDR----L---RPLSYPDTDVILMCFSI 106 (201)
T ss_dssp EEECCCCSGGGTT----T---GGGGCTTCSEEEEEEET
T ss_pred EEEECCCchhHHH----H---HHHhcCCCCEEEEEEEC
Confidence 8899998543211 1 11234678888888775
No 244
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=5.4e-06 Score=64.85 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-cceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++++|++|||||||+|.+++........+ |.... ...+.+++. ...+.++|++|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~-- 64 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP--TVEDTYRQVISCDKS---------------ICTLQITDTTGSHQF-- 64 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC--CSCEEEEEEEEETTE---------------EEEEEEEECCSCSSC--
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CccccEEEEEEECCE---------------EEEEEEEECCCchhh--
Confidence 5799999999999999999998643211111 11100 111222221 125789999985432
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.......++.+|.++.++++
T Consensus 65 -----~~~~~~~~~~~~~~i~v~d~ 84 (172)
T 2erx_A 65 -----PAMQRLSISKGHAFILVYSI 84 (172)
T ss_dssp -----HHHHHHHHHHCSEEEEEEET
T ss_pred -----HHHHHHhcccCCEEEEEEEC
Confidence 12223345678999888876
No 245
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.15 E-value=1.9e-06 Score=69.58 Aligned_cols=82 Identities=23% Similarity=0.225 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|.+|+|||||++.+++.... ..+..++.......+.+++.. ..+.++|++|......
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 86 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQEEYDR 86 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 468999999999999999999987531 222222211112223333321 2578999998432211
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 87 -------~~~~~~~~~d~~i~v~d~ 104 (194)
T 3reg_A 87 -------LRPLSYADSDVVLLCFAV 104 (194)
T ss_dssp -------TGGGGCTTCSEEEEEEET
T ss_pred -------HhHhhccCCcEEEEEEEC
Confidence 112234678888888876
No 246
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.15 E-value=9.6e-07 Score=72.39 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+|++++|+|+||||||||+++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999999987
No 247
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=4.2e-06 Score=67.73 Aligned_cols=82 Identities=24% Similarity=0.250 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+|+|.+|||||||++.+++..... .+..++.......+.+++. ...+.++|++|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~-- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED-- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc--
Confidence 34689999999999999999999864321 1111111111122333322 13588999998754
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ......++.+|.++.++++
T Consensus 89 ---~---~~~~~~~~~~d~iilv~D~ 108 (196)
T 2atv_A 89 ---T---IQREGHMRWGEGFVLVYDI 108 (196)
T ss_dssp ---C---HHHHHHHHHCSEEEEEEET
T ss_pred ---c---cchhhhhccCCEEEEEEEC
Confidence 1 1223445778999998886
No 248
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.15 E-value=2.9e-06 Score=67.32 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|.+|||||||++.+++..... +..++.......+.+++.. ..+.++|++|...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~---- 66 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQT---------------HLVLIREEAGAPD---- 66 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEE---------------EEEEEEECSSSCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEE---------------EEEEEEECCCCch----
Confidence 589999999999999999999864321 1111111112223333321 2578899988543
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
...++.+|.++.++|.
T Consensus 67 --------~~~~~~~d~~ilv~D~ 82 (178)
T 2iwr_A 67 --------AKFSGWADAVIFVFSL 82 (178)
T ss_dssp --------HHHHHHCSEEEEEEET
T ss_pred --------hHHHHhCCEEEEEEEC
Confidence 1234678999988876
No 249
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.14 E-value=5.4e-07 Score=81.37 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=34.1
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-cceeeeCC
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPD 70 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-~G~i~~~g 70 (263)
+.+|..++|+|+||||||||+++|+|. +.|. .|.|.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~-----------~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH-----------HHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcCCCcEEEEec
Confidence 678999999999999999999999998 4676 78886654
No 250
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.14 E-value=2.4e-06 Score=68.41 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=49.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+...+++++|++|||||||++.+++.. ...+. .|.......+.+++ ..+.++|++|....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG-----------------FKLNIWDVGGQKSL 75 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT-----------------EEEEEEEECCSHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 355799999999999999999999875 21111 11222222333322 35889999986432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ......++.+|.++.++++
T Consensus 76 ~-------~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 76 R-------SYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp H-------TTGGGGCTTCSEEEEEEET
T ss_pred H-------HHHHHHhcCCCEEEEEEEC
Confidence 1 1112335678888888886
No 251
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.14 E-value=3.3e-06 Score=66.53 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
.+++|+|++|+|||||++.+++..... .+.++++ .....+.+++.. ..+.++|++|......
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGED---------------TTLVVVDTWEAEKLDK 67 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEE---------------EEEEEECCC-------
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEE---------------EEEEEEecCCCCccch
Confidence 479999999999999999999876432 2222222 123344444422 2578899998653211
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
..+. ...++.+|.++.+++.
T Consensus 68 --~~~~---~~~~~~~~~~i~v~d~ 87 (175)
T 2nzj_A 68 --SWSQ---ESCLQGGSAYVIVYSI 87 (175)
T ss_dssp --CHHH---HHTTTSCSEEEEEEET
T ss_pred --hhhH---HhhcccCCEEEEEEEC
Confidence 1111 1233567887777765
No 252
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.13 E-value=3.1e-06 Score=67.42 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
-.+|+|+|++|+|||||++.+++.... ..+..++.......+.+++.. ..+.++|++|.....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~- 80 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQEEFS- 80 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCGGGC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCcE---------------EEEEEEECCCchhhH-
Confidence 368999999999999999999976322 222222222222233333321 246779999854322
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+. ...++.+|.++.+++.
T Consensus 81 ---~~~---~~~~~~~d~~i~v~d~ 99 (183)
T 3kkq_A 81 ---AMR---EQYMRTGDGFLIVYSV 99 (183)
T ss_dssp ---SSH---HHHHHHCSEEEEEEET
T ss_pred ---HHH---HHHHhcCCEEEEEEEC
Confidence 112 2335678999888876
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.13 E-value=6.7e-08 Score=91.15 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=28.5
Q ss_pred ccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 18 ~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+.+.+|++++|+|+||||||||+++++|..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999984
No 254
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.13 E-value=3e-06 Score=68.02 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=46.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+++|.+|||||||++.|++.... ..++.++.......+.+++.. ..+.++|++|.....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 83 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS-- 83 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC-------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEE---------------EEEEEEECCChHHHH--
Confidence 58999999999999999999976422 233333322222333333321 257889999854221
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
......++.+|.++.++++
T Consensus 84 -----~~~~~~~~~~d~~i~v~d~ 102 (190)
T 3con_A 84 -----AMRDQYMRTGEGFLCVFAI 102 (190)
T ss_dssp -----------CTTCSEEEEEEET
T ss_pred -----HHHHHhhCcCCEEEEEEEC
Confidence 1112334667888877765
No 255
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=4.4e-06 Score=67.32 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|+|||||++.+++... ...+..++.......+.+++.. ..+.++|++|.......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~~ 82 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDRL 82 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSSSTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcchhHH
Confidence 5899999999999999999997642 2333333333222334443321 35788999986543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
....++.+|.++.++++
T Consensus 83 -------~~~~~~~~d~~i~v~d~ 99 (194)
T 2atx_A 83 -------RPLSYPMTDVFLICFSV 99 (194)
T ss_dssp -------GGGGCTTCSEEEEEEET
T ss_pred -------HHHhcCCCCEEEEEEEC
Confidence 11234678888888876
No 256
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.12 E-value=4.1e-06 Score=65.71 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
+...+++++|++|||||||++.+++.... +..|+.| .+.+. ...+.++|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------~~~~t~~~~~~~~~~~-----------------~~~~~~~Dt~G 60 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-------TTIPTIGFNVETVTYK-----------------NLKFQVWDLGG 60 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-------CCCCCSSEEEEEEEET-----------------TEEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-------CcCCcCccceEEEEEC-----------------CEEEEEEECCC
Confidence 34568999999999999999999876421 1123223 22322 13588999998
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
...... .....++.+|.++.++++.
T Consensus 61 ~~~~~~-------~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 61 LTSIRP-------YWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp CGGGGG-------GGGGGCTTCSEEEEEEETT
T ss_pred ChhhhH-------HHHHHhccCCEEEEEEECC
Confidence 643211 1123446789999988873
No 257
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.12 E-value=6.8e-07 Score=85.76 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-ccceeeeCCcc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDER 72 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-~~G~i~~~g~~ 72 (263)
.+||+|+||||||||+++|+|+. .| ++|.|++.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~-----------~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA-----------LPRGSGIVTRCPLV 83 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC------------------CCCSCEE
T ss_pred eEEEECCCCChHHHHHHHHhCCC-----------CCCCCCeEEEcCEE
Confidence 49999999999999999999994 56 67877777654
No 258
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.12 E-value=3e-06 Score=67.31 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+++|+|++|+|||||++.+++.... ..++.++.......+.+++. ...+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGA---------------TVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC----------------------CEEECCCC-CTTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCE---------------EEEEEEEECCCChhhhh
Confidence 368999999999999999999976421 22222221111111222221 12577899998543221
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.++++
T Consensus 72 ----~---~~~~~~~~d~~i~v~d~ 89 (182)
T 3bwd_D 72 ----L---RPLSYRGADVFILAFSL 89 (182)
T ss_dssp ----T---GGGGGTTCSEEEEEEET
T ss_pred ----h---HHhhccCCCEEEEEEEC
Confidence 1 12334678888888876
No 259
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.12 E-value=3.8e-06 Score=77.44 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
+....++|+|++|+|||||++.|++..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 345699999999999999999997653
No 260
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.12 E-value=6.6e-07 Score=72.76 Aligned_cols=86 Identities=26% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccc-cCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCT-IEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t-~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
...+|+|+|++|+|||||++.+++..... +.+..++ .......+.+++.. ....+.++|++|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcHH
Confidence 34689999999999999999999873222 2222222 12333344444320 013588999998642
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeec
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. .......++.+|.++.++++
T Consensus 86 ~-------~~~~~~~~~~~d~~i~v~d~ 106 (208)
T 2yc2_C 86 Y-------KEQISQYWNGVYYAILVFDV 106 (208)
T ss_dssp H-------HHHHSTTCCCCCEEEEEEET
T ss_pred H-------HHHHHHHHhhCcEEEEEEEC
Confidence 1 12223345678888888876
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.12 E-value=4.2e-07 Score=73.27 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---cceeeeCCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDER 72 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~---~G~i~~~g~~ 72 (263)
.+++|+|++|||||||+++|+|++ .|. .|.|.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~-----------~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL-----------RERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-----------HHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----------hhcCCceEEEEEcCcc
Confidence 589999999999999999999994 666 7999988765
No 262
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.10 E-value=5.9e-06 Score=67.61 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+++|+|.+|+|||||++.+++... ...+..++.......+.+++.. ..+.++|++|......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYSR 72 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 35899999999999999999997642 1233333322222333343321 3688999998754321
Q ss_pred cccchHHHHHHHHhhhcceeEEeecc
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. ....++.+|.++.+++..
T Consensus 73 ~-------~~~~~~~~d~~ilv~d~~ 91 (212)
T 2j0v_A 73 L-------RPLSYRGADIFVLAFSLI 91 (212)
T ss_dssp ---------CGGGTTCSEEEEEEETT
T ss_pred H-------HHhhccCCCEEEEEEECC
Confidence 1 112356789888888863
No 263
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.10 E-value=3.8e-06 Score=67.59 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
+...+|+|+|++|+|||||++.+++........ .|...+...+... ...+.++|++|....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKG-----------------NVTIKLWDIGGQPRF 80 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEET-----------------TEEEEEEEECCSHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeC-----------------CEEEEEEECCCCHhH
Confidence 345789999999999999999999764321111 1111111112111 135889999985421
Q ss_pred cccccchHHHHHHHHhhhcceeEEeec
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ......++.+|.++.++|+
T Consensus 81 ~-------~~~~~~~~~~d~ii~v~D~ 100 (188)
T 1zd9_A 81 R-------SMWERYCRGVSAIVYMVDA 100 (188)
T ss_dssp H-------TTHHHHHTTCSEEEEEEET
T ss_pred H-------HHHHHHHccCCEEEEEEEC
Confidence 1 1122345788999999886
No 264
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.09 E-value=3.5e-06 Score=67.98 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcccee--eeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV--NIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i--~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
...+|+|+|.+|||||||++.+++......++ .|+.|.. .+.+ ....+.++|++|...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~-----~~t~~~~~~~~~~---------------~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI-----TATVGYNVETFEK---------------GRVAFTVFDMGGAKK 75 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CC-----CCCSSEEEEEEEE---------------TTEEEEEEEECCSGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccc-----ccccceeEEEEEe---------------CCEEEEEEECCCCHh
Confidence 34689999999999999999999875432111 2233311 1111 113688999998743
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
... .....++.+|.++.|+++.
T Consensus 76 ~~~-------~~~~~~~~~d~ii~v~D~~ 97 (199)
T 4bas_A 76 FRG-------LWETYYDNIDAVIFVVDSS 97 (199)
T ss_dssp GGG-------GGGGGCTTCSEEEEEEETT
T ss_pred HHH-------HHHHHHhcCCEEEEEEECC
Confidence 221 1123356889999998873
No 265
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.09 E-value=2.5e-06 Score=69.87 Aligned_cols=82 Identities=21% Similarity=0.170 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+++|++|||||||++.+++... ...+..++.......+.+++.. ..+.++|++|......
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 93 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDYDR 93 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CE---------------EEEEEEEECCSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEE---------------EEEEEEECCCchhhHH
Confidence 46999999999999999999996532 1233333322222333333321 2567999998743221
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 94 -------~~~~~~~~~d~~i~v~d~ 111 (204)
T 4gzl_A 94 -------LRPLSYPQTDVFLICFSL 111 (204)
T ss_dssp -------TGGGGCTTCSEEEEEEET
T ss_pred -------HHHHHhccCCEEEEEEEC
Confidence 112244678988888876
No 266
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.09 E-value=6.3e-07 Score=81.55 Aligned_cols=55 Identities=11% Similarity=-0.021 Sum_probs=44.2
Q ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHHHHHh----hcCCcccc
Q 024748 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWL----QDGKDVRL 203 (263)
Q Consensus 146 ~i~ilde~~~~~d~~~~~k~~~~~~~~~~~~~-----~h~~~~i~~l~d~i~~~L----~~G~~~~~ 203 (263)
+++++|||+...|+.......+.+.++. .+. +|+...+ .+||++ .+| .+|+++..
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i-~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHH-YKVEKQVEDGRTVSH 380 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEE-EEEEEEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeE-EEEEEeccCCceEEE
Confidence 6999999999999999999888888775 333 3998654 679999 888 88877654
No 267
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=3.4e-06 Score=67.66 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+|+|++|||||||++.+++.... .. ..|+......+.+.+ ..+.++|++|.....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVINN-----------------TRFLMWDIGGQESLR 74 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEETT-----------------EEEEEEECCC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4578999999999999999999965421 00 112222222333322 368899999874322
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. +. ...++.+|.++.++|+.
T Consensus 75 ~----~~---~~~~~~~d~ii~v~d~~ 94 (187)
T 1zj6_A 75 S----SW---NTYYTNTEFVIVVVDST 94 (187)
T ss_dssp G----GG---HHHHTTCCEEEEEEETT
T ss_pred H----HH---HHHhcCCCEEEEEEeCC
Confidence 1 11 23347799999999873
No 268
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.06 E-value=2.4e-06 Score=68.04 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
...+++|+|++|||||||++.+++... ....|+.| .+.+++ ..+.++|++|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~ 72 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVETLSYKN-----------------LKLNVWDLGGQ 72 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-------EEECSSTTCCEEEEEETT-----------------EEEEEEEEC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-------CccCCcCccceEEEEECC-----------------EEEEEEECCCC
Confidence 457999999999999999999996532 11122222 222221 36889999997
Q ss_pred ccCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
...... ....++.+|.++.++|+
T Consensus 73 ~~~~~~-------~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 73 TSIRPY-------WRCYYADTAAVIFVVDS 95 (183)
T ss_dssp --CCTT-------GGGTTTTEEEEEEEEET
T ss_pred HhHHHH-------HHHHhccCCEEEEEEEC
Confidence 542211 12334678999998886
No 269
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.06 E-value=3.6e-06 Score=69.42 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|.+|||||||++.+++.... ..+..++.......+.+++.. ..+.++|++|......
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~~- 97 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQDDYDR- 97 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC---------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCchhhhH-
Confidence 58999999999999999999976421 122222222222233333321 2588999998543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.....++.+|.++.++++
T Consensus 98 ------~~~~~~~~~d~~i~v~d~ 115 (214)
T 2j1l_A 98 ------LRPLFYPDASVLLLCFDV 115 (214)
T ss_dssp -------------CEEEEEEEEET
T ss_pred ------HHHHHhccCCEEEEEEEC
Confidence 111234678888888876
No 270
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.06 E-value=4.9e-06 Score=68.11 Aligned_cols=81 Identities=20% Similarity=0.180 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||++.+++..... .+..++.......+.+++. ...+.++|++|.......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~~ 89 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYDRL 89 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTE---------------EEEEEEEECTTCTTCTTT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCE---------------EEEEEEEECCCcHHHHHH
Confidence 489999999999999999999865321 1111111111122333332 135788999986432211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
....++.+|.++.+++.
T Consensus 90 -------~~~~~~~~d~~i~v~d~ 106 (207)
T 2fv8_A 90 -------RPLSYPDTDVILMCFSV 106 (207)
T ss_dssp -------GGGGCTTCCEEEEEEET
T ss_pred -------HHhhcCCCCEEEEEEEC
Confidence 11234678888888875
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.05 E-value=1.1e-06 Score=72.06 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcccee--eeCCcc
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV--NIPDER 72 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i--~~~g~~ 72 (263)
......+|++++|+|+|||||||+.++|++.. . ..|.+ .+++..
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l-----------~-~~G~~~~~~d~d~ 63 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQML-----------Y-QKGKLCYILDGDN 63 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH-----------H-HTTCCEEEEEHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH-----------H-hcCceEEEecCch
Confidence 33445789999999999999999999999983 3 56766 666543
No 272
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.05 E-value=3.7e-06 Score=77.05 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
.++|||+||||||||+|+|+|...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 469999999999999999999864
No 273
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.04 E-value=4.8e-06 Score=77.65 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=53.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------------------------CCccccCCccceeeeCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN-------------------------------FPFCTIEPNEARVNIPD 70 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~-------------------------------~~~~t~~p~~G~i~~~g 70 (263)
....+++|+|++|+|||||++.|++....+.. .++.|+......+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 34569999999999999999999865221110 011121111111111
Q ss_pred cchHHHhhhcCCCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
-...+.++|++|... +.......++.+|.++.++++.+
T Consensus 109 ---------------~~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 109 ---------------HRANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 146 (483)
T ss_dssp ---------------SSCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC
T ss_pred ---------------CCceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCC
Confidence 123688999998732 34555667788999999999864
No 274
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.04 E-value=1.1e-05 Score=64.86 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-cceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~-~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
..+|+|+|++|||||||++.|++...... +. .|.... ...+.+++. ...+.++|++|.....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~-~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 70 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDT-YI-PTIEDTYRQVISCDKS---------------VCTLQITDTTGSHQFP 70 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCT-TS-CCCCEEEEEEEEETTE---------------EEEEEEEECCGGGSCH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCc-cc-CccccceeEEEEECCE---------------EEEEEEEeCCChHHhH
Confidence 36899999999999999999998643211 10 111110 111122221 1358899999854321
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
......++.+|.++.++++.
T Consensus 71 -------~~~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 71 -------AMQRLSISKGHAFILVFSVT 90 (199)
T ss_dssp -------HHHHHHHHHCSEEEEEEETT
T ss_pred -------HHHHHhhccCCEEEEEEECc
Confidence 22233456789998888863
No 275
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.03 E-value=5e-06 Score=67.42 Aligned_cols=86 Identities=17% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeee--CCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI--PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~--~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
.-.++.|+|.+|||||||++.+++..... +..+..+....+.+ .+ .....+.++|++|...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~--------------~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISN--------------SSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECC--------------TTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccC--------------CCeeEEEEEECCCCHH
Confidence 34699999999999999999999864221 11112222222221 11 0123688999998543
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeecc
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
... ........++.+|.++.++|+.
T Consensus 82 ~~~----~~~~~~~~~~~~~~~i~v~d~~ 106 (196)
T 3llu_A 82 FFD----PTFDYEMIFRGTGALIYVIDAQ 106 (196)
T ss_dssp TTC----TTCCHHHHHHTCSEEEEEEETT
T ss_pred HHh----hhhhcccccccCCEEEEEEECC
Confidence 221 1100023446799999998873
No 276
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.03 E-value=3.9e-06 Score=69.29 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+|+|.+|||||||++.+++.... ..+..++.......+.+++. ...+.++|++|.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSPYYD 89 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCHhHH
Confidence 3469999999999999999999976432 11111111111112222221 1357889998854322
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. + ....++.+|.++.++++.
T Consensus 90 ~----~---~~~~~~~~d~~i~v~d~~ 109 (214)
T 3q3j_B 90 N----V---RPLCYSDSDAVLLCFDIS 109 (214)
T ss_dssp T----T---GGGGCTTCSEEEEEEETT
T ss_pred H----H---HHHHcCCCeEEEEEEECc
Confidence 1 1 112346788888888863
No 277
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.03 E-value=1.3e-06 Score=72.29 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCcCCcc-cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 12 PAERPIL-GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 12 ~~~~~~~-~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++...++ +.+++|+.++|+|+||||||||++.|++..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455566 489999999999999999999999999773
No 278
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.02 E-value=7.2e-06 Score=65.66 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+++++|++|+|||||++.+++.... ..+..+........+.+++. ...+.++|++|......
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~- 70 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYYDN- 70 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSC---------------EEEEEEEEECCSGGGTT-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCE---------------EEEEEEEECCCChhhhh-
Confidence 58999999999999999999986422 11111111111112222221 13578899998543211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+ ....++.+|.++.+++.
T Consensus 71 ---~---~~~~~~~~~~~i~v~d~ 88 (184)
T 1m7b_A 71 ---V---RPLSYPDSDAVLICFDI 88 (184)
T ss_dssp ---T---GGGGCTTCSEEEEEEET
T ss_pred ---h---HHhhcCCCcEEEEEEEC
Confidence 1 11234678888888876
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.5e-06 Score=69.76 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 9 KEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 9 ~~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
...++...++..+.+|.+++|+|++||||||+.+.|++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346788999999999999999999999999999999865
No 280
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.02 E-value=1.5e-06 Score=76.70 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
.+++|+|+||||||||+|.|+|... ++-..-+.++.|.|.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHHH
Confidence 5899999999999999999999841 01111125677877776644
No 281
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.00 E-value=3.7e-07 Score=74.33 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCccc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 104 (263)
.+|+|+|++|||||||+|.|++........+..+.......+.+++.. ..+.++|++|.......
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFRTI 98 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHHHH
Confidence 589999999999999999999865333223333333334444544422 25888999985432211
Q ss_pred ccchHHHHHHHHhhhcceeEEeec
Q 024748 105 GQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 105 ~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
. ...++.+|.++.++++
T Consensus 99 ~-------~~~~~~~d~~i~v~d~ 115 (199)
T 3l0i_B 99 T-------SSYYRGAHGIIVVYDV 115 (199)
T ss_dssp S-------CC--CCCSEEEECC-C
T ss_pred H-------HHHhhcCCEEEEEEEC
Confidence 1 1233567888877765
No 282
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.00 E-value=7.9e-06 Score=67.10 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|++|+|||||++.+++..... .+..++.......+.+++. ...+.++|++|......
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYYDN 91 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSSS---------------EEEEEEEEECCSGGGTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECCE---------------EEEEEEEeCCCcHhhhH
Confidence 3589999999999999999999874321 1111111111112222221 13588999998543211
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
+. ...++.+|.++.++|.
T Consensus 92 ----~~---~~~~~~~d~~ilv~D~ 109 (205)
T 1gwn_A 92 ----VR---PLSYPDSDAVLICFDI 109 (205)
T ss_dssp ----TG---GGGCTTCSEEEEEEET
T ss_pred ----HH---HhhccCCCEEEEEEEC
Confidence 11 1234678888888876
No 283
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=3.9e-06 Score=70.15 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=35.5
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----ccceeeeCCcc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDER 72 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p-----~~G~i~~~g~~ 72 (263)
+.++.|++++|+|+||||||||++.|++... ..+ ..|.+++.+..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---------~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQ---------LPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTT---------SCGGGTCCSSEEEEEESSS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHh---------CchhcCCCCCeEEEEECCC
Confidence 6789999999999999999999999998321 122 46777776543
No 284
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.99 E-value=3.4e-06 Score=67.69 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..+...+.+| ..+|+|+||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 3466777788 99999999999999999998874
No 285
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.99 E-value=7.8e-06 Score=76.23 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-------CCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI-------PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~-------~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
..++++|+.++|||||++.|+|... .....++.|+......+.+++ ..++++|+||
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtPG 82 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAPG 82 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCSS
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECCC
Confidence 5899999999999999999998751 112233444444433333332 2589999998
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.. .+.......+..+|.++.++++.+
T Consensus 83 h~-------~~~~~~~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 83 HA-------DLIRAVVSAADIIDLALIVVDAKE 108 (482)
T ss_dssp HH-------HHHHHHHHHTTSCCEEEEEEETTT
T ss_pred hH-------HHHHHHHHHHhhCCEEEEEEecCC
Confidence 53 233445566788999999999864
No 286
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.97 E-value=2.4e-06 Score=70.18 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=25.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....|.++||+|+||||||||+++|++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999987
No 287
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.97 E-value=4.5e-06 Score=67.01 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+++|+|++|||||||++.++|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999964
No 288
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.96 E-value=8.8e-06 Score=65.52 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+|+|+|.+|||||||++.+++... ...+..++.......+.+++.. ..+.++|++|.....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~- 83 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQP---------------VHLRVMDTADLDTPR- 83 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---CC-
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEE---------------EEEEEEECCCCCcch-
Confidence 36899999999999999999997642 1222222211111122333221 357889999865322
Q ss_pred cccchHHHHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.+ ...++.+|.++.+.+.
T Consensus 84 ---~~----~~~~~~~~~~ilv~d~ 101 (187)
T 3c5c_A 84 ---NC----ERYLNWAHAFLVVYSV 101 (187)
T ss_dssp ---CT----HHHHTTCSEEEEEEET
T ss_pred ---hH----HHHHhhCCEEEEEEEC
Confidence 12 1244678888888775
No 289
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.96 E-value=6.5e-06 Score=73.57 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
-.|+|+|.+|||||||+|.|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999999864
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.96 E-value=2.9e-06 Score=71.21 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=27.4
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+..++|++++|+|+||||||||+++|+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4455678999999999999999999999986
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.94 E-value=2.2e-06 Score=76.97 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
...+|..++|+||||||||||+++|+|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34677899999999999999999999983
No 292
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=5.5e-06 Score=74.43 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
..++|+|++|+|||||+|.|+|...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999988753
No 293
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.93 E-value=4.5e-06 Score=67.73 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDE 71 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~ 71 (263)
.+|+|||.+|+|||||+|.++|....+ +.++.++.......+.++|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE 54 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCe
Confidence 479999999999999999999754433 33343333333344555553
No 294
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.91 E-value=2.2e-05 Score=64.19 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..+++|+|++|+|||||++.+++... ...++.+ ..+...+.+++.. ...+.++|++|....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~--~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~-- 67 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSI--TDSSAIYKVNNNR--------------GNSLTLIDLPGHESL-- 67 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCC--SCEEEEEECSSTT--------------CCEEEEEECCCCHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCc--ceeeEEEEecCCC--------------ccEEEEEECCCChhH--
Confidence 46899999999999999999997642 1223222 1222334444210 135899999986421
Q ss_pred cccchHH-HHHHHHhhhcceeEEeec
Q 024748 104 EGQGLGN-SFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 104 ~~~~~~~-~~~~~~~~~d~~l~vv~~ 128 (263)
.. .....++.+|.++.++|+
T Consensus 68 -----~~~~~~~~~~~~~~~i~v~d~ 88 (214)
T 2fh5_B 68 -----RFQLLDRFKSSARAVVFVVDS 88 (214)
T ss_dssp -----HHHHHHHHGGGEEEEEEEEET
T ss_pred -----HHHHHHHHHhhCCEEEEEEEC
Confidence 11 112235788999999886
No 295
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.91 E-value=7.4e-06 Score=65.69 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
.+|+|+|++|||||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5899999999999999999998753
No 296
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.90 E-value=9.9e-06 Score=67.20 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCccceeeeCCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDE 71 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~~G~i~~~g~ 71 (263)
.+|+|||.+|+|||||++.++|....+ +.++.++.......+.++|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~ 85 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE 85 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCe
Confidence 589999999999999999999865443 33343333322334555553
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=4.1e-06 Score=67.22 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=26.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..+..|..++|+||||+|||||++++++..
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999883
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.90 E-value=5.1e-06 Score=65.91 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+|++++|+|+|||||||+.++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999986
No 299
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.88 E-value=3.5e-06 Score=66.11 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.|+.++|+|+||+|||||++++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999984
No 300
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.88 E-value=5.7e-06 Score=71.46 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+...++.| ++|+||||||||||+++|+|..
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 344566677 9999999999999999999973
No 301
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.88 E-value=2.6e-05 Score=75.47 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchH-----HHh--hhcCCCC-C---CCc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----WLC--QLFKPKS-A---VPA 88 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~-----~l~--~~~~~~~-~---~~~ 88 (263)
.+..+.+++|+|++|+|||||++.|++....+ +..|.| .+|..+. ... ..+.++. . -..
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---------~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~ 74 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---------ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH 74 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---------SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---------Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCE
Confidence 46778999999999999999999999764221 123333 1221110 000 0111111 0 012
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
.+.++|++|... +.......++.+|..+.++|+.+.
T Consensus 75 ~~nliDTpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 75 RVFLLDAPGYGD-------FVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp EEEEEECCCSGG-------GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred EEEEEeCCCccc-------hHHHHHHHHhhcCcEEEEEcCCcc
Confidence 477888887542 234456677889999999997543
No 302
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.86 E-value=9.6e-06 Score=65.64 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc----eeeeCCcchHHHhhhcCCCCCCCcceehhhhhcc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G----~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~ 98 (263)
...+|+|+|++|||||||++.+++... .+..|+.| .+.+. ...+.++|++|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-------~~~~~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~ 83 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYK-----------------NICFTVWDVGGQ 83 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-------EEEEEETTEEEEEEEET-----------------TEEEEEEECC--
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-------cccCCcCceeEEEEEEC-----------------CEEEEEEECCCC
Confidence 457999999999999999999986531 11123333 12221 135889999987
Q ss_pred ccCcccccchHHHHHHHHhhhcceeEEeec
Q 024748 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.... .+ ....++.+|.++.++|+
T Consensus 84 ~~~~----~~---~~~~~~~~d~iilv~D~ 106 (192)
T 2b6h_A 84 DKIR----PL---WRHYFQNTQGLIFVVDS 106 (192)
T ss_dssp ---C----TT---HHHHHHTCCEEEEEEET
T ss_pred HhHH----HH---HHHHhccCCEEEEEEEC
Confidence 4321 11 12345788999999886
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.86 E-value=7.2e-06 Score=65.33 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+|++++|+|+|||||||+.++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45889999999999999999999976
No 304
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.85 E-value=4.6e-06 Score=78.66 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
..-+|+|+|++|+|||||++.|++........+++|.+.....+.+++ ...++++||||.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChHHHH
Confidence 345799999999999999999998765445566666665555544421 1258899999954322
Q ss_pred ccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
... ...++.+|.++.++++.+
T Consensus 67 ~~~-------~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 67 AMR-------ARGTQVTDIVILVVAADD 87 (537)
T ss_dssp TSB-------BSSSBSBSSCEEECBSSS
T ss_pred HHH-------HHHHccCCEEEEEEECCC
Confidence 211 122356888899988764
No 305
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.84 E-value=4.7e-06 Score=78.96 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=35.5
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc-eee-eCCcch
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVN-IPDERF 73 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G-~i~-~~g~~~ 73 (263)
.+.+|++++|+|+||||||||+++|+|. +.|..| .+. +++..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~-----------L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR-----------LMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH-----------HHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh-----------hcccCCceEEEECCcHH
Confidence 5778999999999999999999999998 467776 564 666443
No 306
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.06 E-value=2.2e-06 Score=69.84 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+|+|.+|||||||++.+++.... ..+..++.......+.+++. ...+.++|++|.....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD 92 (204)
Confidence 3468999999999999999999865321 12222222222222222221 1246789999864322
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. .....++.+|.++.++++.
T Consensus 93 ~-------~~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 93 R-------LRPLSYPQTDVFLICFSLV 112 (204)
Confidence 1 1122346788888888764
No 307
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.84 E-value=2.5e-05 Score=64.13 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
..++.|+|++|+|||||++.|++...... .++..|..+ .. + ....+.++|++|......
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~---~~----------~-----~~~~~~l~Dt~G~~~~~~ 70 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSA---AD----------Y-----DGSGVTLVDFPGHVKLRY 70 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEE---TT----------G-----GGSSCEEEECCCCGGGTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEE---EE----------e-----eCceEEEEECCCcHHHHH
Confidence 35899999999999999999998752110 001112111 10 0 113588999999754221
Q ss_pred cccchHHHHHHHHhhhcceeEEeecc
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.....+...+..+|.++.++|+.
T Consensus 71 ---~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 71 ---KLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp ---HHHHHHHHHGGGEEEEEEEEETT
T ss_pred ---HHHHHHHhccccCCEEEEEEECC
Confidence 11122222334488999999875
No 308
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.83 E-value=8.8e-06 Score=72.09 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+|+|+|.+|+|||||++.+++.... ..+| |+......+...+ ..++++|++|-....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR 223 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhHH
Confidence 3458999999999999999999876421 1111 2222222222221 358899999833211
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.+ ....++.+|.++.|+++.
T Consensus 224 ----~~---~~~~~~~ad~vilV~D~~ 243 (329)
T 3o47_A 224 ----PL---WRHYFQNTQGLIFVVDSN 243 (329)
T ss_dssp ----CS---HHHHHTTEEEEEEEEETT
T ss_pred ----HH---HHHHhccCCEEEEEEECC
Confidence 11 223456789999999873
No 309
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.83 E-value=1.3e-05 Score=64.18 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
...+++++|++|||||||++.+++.... ...| |.......+.+.+ ..+.++|++|.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGVR 80 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhHH
Confidence 4579999999999999999999765321 1111 1111222233221 368899999975432
Q ss_pred ccccchHHHHHHHHhhhcceeEEeec
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
... ...++.+|.++.++|+
T Consensus 81 ~~~-------~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 81 PYW-------RCYFSDTDAVIYVVDS 99 (189)
T ss_dssp CCC-------SSSSTTCCEEEEEEET
T ss_pred HHH-------HHHhhcCCEEEEEEeC
Confidence 211 1223678888888886
No 310
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.82 E-value=1.3e-05 Score=78.04 Aligned_cols=82 Identities=22% Similarity=0.159 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc---CCCC---------CCC------CCccccCCccceeeeCCcchHHHhhhcCCCCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK---LAIP---------AEN------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G---~~~~---------~~~------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~ 86 (263)
..++|+|++|+|||||++.|++ .... ..+ .+++|+....+.+.+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC----------------
Confidence 5899999999999999999984 3210 001 13334444433333332
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
..+.++||+|.... .......++.+|.++.++|+.+
T Consensus 75 -~~i~liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 75 -HRVNIIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp -EEEEEECCCCCSSC-------CHHHHHHHHHCSEEEEEEETTT
T ss_pred -eeEEEEECcCCcch-------HHHHHHHHHHCCEEEEEECCCC
Confidence 35889999997542 2334566788999999999864
No 311
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.82 E-value=2.5e-05 Score=68.17 Aligned_cols=85 Identities=20% Similarity=0.149 Sum_probs=53.7
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhcccc
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~ 100 (263)
.....+++++|.+|+|||||++.+++... ...+..++.......+.+++.. ..+.++|++|...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLED 215 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCCGG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEE---------------EEEEEEeCCCchh
Confidence 34567999999999999999999996542 2333333333333333443322 2567999999654
Q ss_pred CcccccchHHHHHHHHhhhcceeEEeec
Q 024748 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (263)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~d~~l~vv~~ 128 (263)
.... ....++.+|.++.++++
T Consensus 216 ~~~~-------~~~~~~~~d~~i~v~d~ 236 (332)
T 2wkq_A 216 YDRL-------RPLSYPQTDVFLICFSL 236 (332)
T ss_dssp GTTT-------GGGGCTTCSEEEEEEET
T ss_pred hhHH-------HHHhccCCCEEEEEEeC
Confidence 3211 12234678988888886
No 312
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.81 E-value=9.1e-06 Score=76.61 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCCCCC------CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhh
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA------ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~~~~------~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~ 95 (263)
....+|+|+|.+|||||||++.+++..... ....+++..|+.|.+.+.+ ......+.++|+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~-------------~~~~~~~~i~Dt 105 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD-------------ELKECLFHFWDF 105 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS-------------TTTTCEEEEECC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC-------------CCceEEEEEEEC
Confidence 344689999999999999999999875211 0111111112222222221 011236889999
Q ss_pred hccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+|..... .+...+ ++.+|++++|+|+..
T Consensus 106 ~G~e~~~----~~~~~~---l~~~d~ii~V~D~s~ 133 (535)
T 3dpu_A 106 GGQEIMH----ASHQFF---MTRSSVYMLLLDSRT 133 (535)
T ss_dssp CSCCTTT----TTCHHH---HHSSEEEEEEECGGG
T ss_pred CcHHHHH----HHHHHH---ccCCcEEEEEEeCCC
Confidence 9943221 122222 456899999998753
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.80 E-value=1.3e-05 Score=65.76 Aligned_cols=33 Identities=39% Similarity=0.492 Sum_probs=28.5
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++--++++|.+++|+|++||||||+.++|++..
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345567889999999999999999999999873
No 314
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.80 E-value=1.5e-05 Score=72.41 Aligned_cols=98 Identities=20% Similarity=0.172 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCc-----cceeeeCCcchHHHhhhcCCCCCCCcceehhhhhc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPN-----EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~~~t~~p~-----~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g 97 (263)
-.+++++|++|+|||||+|.|+|..... .+++.+|.... ...+.... ..... .+.........++++|+||
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEP-SCKSC--GSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSS-CCGGG--TCCSCCEEEEEEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccc-ccccc--cccccccccceEEEEECCC
Confidence 4689999999999999999999965321 11111111000 00000000 00000 0000000113688999998
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
.. .+.......+..+|.++.++++.+.
T Consensus 85 h~-------~~~~~~~~~~~~~D~~ilVvda~~~ 111 (403)
T 3sjy_A 85 HE-------VLMATMLSGAALMDGAILVVAANEP 111 (403)
T ss_dssp CG-------GGHHHHHHHHTTCSEEEEEEETTSC
T ss_pred cH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 32 3345566677889999999998753
No 315
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.79 E-value=7.2e-06 Score=67.71 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCcHHHHHHH-HHcCCCCC-CCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccC
Q 024748 24 HLKIGIVGLPNVGKSTLFNT-LTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~-L~G~~~~~-~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~ 101 (263)
..+|+|+|.+|||||||++. +.|..... .+.+++|..... +.+.+. ...+.++|++|....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~---------------~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRG---------------PIKFNVWDTAGQEKF 77 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEE--EEETTE---------------EEEEEEEEECSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--EEECCE---------------EEEEEEEeCCChHHH
Confidence 36899999999999999999 55543222 222333222211 122221 135788999985432
Q ss_pred cccccchHHHHHHHHhhhcceeEEeecc
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
.. +.. ..++.+|.++.++++.
T Consensus 78 ~~----~~~---~~~~~~~~~i~v~d~~ 98 (221)
T 3gj0_A 78 GG----LRD---GYYIQAQCAIIMFDVT 98 (221)
T ss_dssp SC----CCH---HHHTTCCEEEEEEETT
T ss_pred hH----HHH---HHHhcCCEEEEEEECC
Confidence 21 111 2345788888888864
No 316
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.78 E-value=9.4e-06 Score=81.01 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=33.7
Q ss_pred CCCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 10 ~~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+....+.++..+..|++++|+||||||||||||+++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 35667788999999999999999999999999999765
No 317
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.77 E-value=1.2e-05 Score=69.34 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
-+....+.+.++.|++++|+|+||||||||++.+++.
T Consensus 17 ~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 17 PPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445566678999999999999999999999999975
No 318
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.75 E-value=1.4e-05 Score=78.86 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
....+.++.. +.|++++|+||||||||||+|+++|+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4456677777 889999999999999999999999873
No 319
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.74 E-value=1.6e-05 Score=65.37 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCcc-cccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 15 RPIL-GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 15 ~~~~-~~i~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..++ +.+++|++++|+|+||||||||++.|++
T Consensus 10 D~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 10 DSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444 5899999999999999999999999997
No 320
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.74 E-value=1.4e-05 Score=65.72 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~ 102 (263)
.-.+|+|+|.+|||||||+|.|++..... ...+..|.....-. +.........+.++|++|.....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~--------~~~~~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK------NYNATVGAVNHPVT--------FLDDQGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC------EEETTTTEEEEEEE--------EEBTTSCEEEEEEEEECSGGGTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceeeEEEE--------EEeCCCcEEEEEEEecCCchhhc
Confidence 34689999999999999999999764211 11222222111000 00000111258899999965432
Q ss_pred ccccchHHHHHHHHhhhcceeEEeecc
Q 024748 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (263)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~l~vv~~~ 129 (263)
. +.. ..++.+|.++.++++.
T Consensus 76 ~----~~~---~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 76 V----LKD---VYYIGASGAILFFDVT 95 (218)
T ss_dssp C----CCH---HHHTTCSEEEEEEETT
T ss_pred h----HHH---HHhhcCCEEEEEEeCC
Confidence 1 111 2246789999988874
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.73 E-value=1.2e-05 Score=65.90 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=33.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcccee
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARV 66 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~-~-~~~~~~t~~p~~G~i 66 (263)
....|..++|+|++|||||||.+.|...... . -..+.+|+.|..|.+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 3467889999999999999999999865422 2 223456777665543
No 322
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.71 E-value=1.3e-05 Score=76.71 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..|+|+|++|+|||||++.|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 323
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.70 E-value=1.6e-05 Score=71.81 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=30.2
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
...++..++.|+.++|+||||||||||+++|+|.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445678999999999999999999999999986
No 324
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.70 E-value=5.5e-05 Score=71.30 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC----------------C------CCccccCCccceeeeCCcchHHHhhhcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAE----------------N------FPFCTIEPNEARVNIPDERFEWLCQLFK 81 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~----------------~------~~~~t~~p~~G~i~~~g~~~~~l~~~~~ 81 (263)
--.++|+|++|||||||++.|++....+. + .++.|+......+.+.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------ 80 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------------ 80 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC------------
Confidence 35899999999999999999974321110 0 0112222222222221
Q ss_pred CCCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 82 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
...+.++||||..... ......++.+|.++.|+|+..
T Consensus 81 -----~~~i~liDTPG~~df~-------~~~~~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 81 -----DYLINLLDTPGHADFT-------EDTYRTLTAVDSALMVIDAAK 117 (528)
T ss_dssp -----TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTT
T ss_pred -----CEEEEEEECCCchhHH-------HHHHHHHHhCCEEEEEEeCCC
Confidence 1358899999965422 345566788999999999864
No 325
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.69 E-value=5.2e-05 Score=74.18 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP 61 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p 61 (263)
-.|+++|..+||||||+|+|+|......+...+|+.|
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~P 88 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 88 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccc
Confidence 4899999999999999999999765222222455544
No 326
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.69 E-value=1.5e-05 Score=71.02 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=27.7
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.++..+..|.+++|+|+||||||||++.|++.
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556788999999999999999999999865
No 327
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.68 E-value=3.3e-05 Score=71.17 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL---------------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~---------------~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
-+|+|+|++++|||||+|.|+|. ...+-....+|...+.|...+...-.. -.| ..-..+
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~-----~~~-~~~~~~ 141 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLI-----NKP-DGKKVA 141 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEE-----ECS-SSCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCcccc-----ccC-CCCcce
Confidence 47889999999999999999975 233322333666677887665320000 000 011236
Q ss_pred eehhhhhccccC
Q 024748 90 LEIHDIAGLVRG 101 (263)
Q Consensus 90 l~~~d~~g~~~~ 101 (263)
+.++||+|+...
T Consensus 142 vvllDTeG~~~~ 153 (447)
T 3q5d_A 142 VLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEECCCSS
T ss_pred EEEEcCCccccc
Confidence 888999998653
No 328
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.66 E-value=2e-05 Score=77.28 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=29.2
Q ss_pred CCCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 11 ~~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
....+.++.. |++++|+||||||||||+|+++|+.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3445555555 9999999999999999999999984
No 329
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=6.1e-05 Score=70.99 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.....++|+|++|||||||++.|++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhh
Confidence 34468999999999999999999964
No 330
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.64 E-value=3.1e-05 Score=69.77 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=48.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcccc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 105 (263)
.++++|++++|||||++.|+. .+.|+......+...+ ..++++|+||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~----- 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPK----- 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS-----------------SEEEEEECTTTTT-----
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC-----------------eEEEEEECCChHH-----
Confidence 899999999999999999981 1233333222222221 2589999999643
Q ss_pred cchHHHHHHHHhhhcceeEEee
Q 024748 106 QGLGNSFLSHIRAVDGIFHVLR 127 (263)
Q Consensus 106 ~~~~~~~~~~~~~~d~~l~vv~ 127 (263)
+.......++.+|.++.+++
T Consensus 73 --f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 73 --TLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp --CHHHHHHHHHTCSEEEEEEC
T ss_pred --HHHHHHHHHHHCCEEEEEEc
Confidence 23344556688999999998
No 331
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.64 E-value=2.5e-05 Score=63.63 Aligned_cols=40 Identities=30% Similarity=0.230 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcccee
Q 024748 27 IGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARV 66 (263)
Q Consensus 27 vgivG~nGaGKSTLl~~L~G~~~~-~-~~~~~~t~~p~~G~i 66 (263)
+.|+||+|||||||++.|...... . -..+.||+.|..|.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 789999999999999999765432 2 467889999998874
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.64 E-value=2.8e-05 Score=64.40 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+.+++|+|++||||||+.++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999875
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.63 E-value=2.4e-05 Score=69.20 Aligned_cols=24 Identities=46% Similarity=0.495 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.++||+|+||||||||+++|.++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999884
No 334
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.61 E-value=8.2e-06 Score=69.64 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=32.7
Q ss_pred CCCcCCcccccCC---CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 11 APAERPILGRFSS---HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 11 ~~~~~~~~~~i~~---g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
......++..+.+ |++++|+|++||||||+.++|++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4566778888888 999999999999999999999874
No 335
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.61 E-value=2.4e-05 Score=70.29 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.0
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
.+...++.| .++|+|+|||||||||++|+
T Consensus 16 ~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 16 NVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345677788 78899999999999999998
No 336
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.59 E-value=3e-05 Score=72.53 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhhhccccCcc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~~g~~~~~~ 103 (263)
--+++|+|+.|+|||||++.|.+........++.|.+.....+.+++ ..++++||||......
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHHHH
Confidence 35799999999999999999987543333334444433222222222 2578999999654332
Q ss_pred cccchHHHHHHHHhhhcceeEEeeccC
Q 024748 104 EGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 104 ~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
.. ...++.+|.++.++++.+
T Consensus 67 ~~-------~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 67 MR-------ARGAQATDIVVLVVAADD 86 (501)
T ss_dssp SB-------CSSSBSCSSEEEEEETTT
T ss_pred HH-------HHHHhhCCEEEEEeeccc
Confidence 11 122366888888888753
No 337
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=2.2e-05 Score=68.95 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=34.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
....+|.+++|+|+|||||||++..|++.. .+..|.|.+.+.+
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-----------~~~g~kV~lv~~D 141 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-----------VDEGKSVVLAAAD 141 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHH-----------HHTTCCEEEEEEC
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHH-----------HhcCCEEEEEccc
Confidence 345678999999999999999999999984 5666777665443
No 338
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.58 E-value=3.1e-05 Score=69.46 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=29.2
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
...+...+.+| +++|+|+||||||||+++|.++
T Consensus 17 ~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 17 LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 45677888899 9999999999999999999875
No 339
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.58 E-value=0.0001 Score=71.61 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHH---cCCCCCC---------C------CCccccCCccceeeeCCcchHHHhhhcCCCCCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLT---KLAIPAE---------N------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~---G~~~~~~---------~------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~ 86 (263)
-.++|+|++|+|||||++.|+ |...... + ..+.|+......+.+.
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----------------- 75 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----------------- 75 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET-----------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC-----------------
Confidence 589999999999999999998 3211000 0 1112222222222211
Q ss_pred CcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 87 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
...+.++||+|... +.......++.+|.++.++++.+.
T Consensus 76 ~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp TEEEEEECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CeEEEEEECcCccc-------hHHHHHHHHHHCCEEEEEEECCCC
Confidence 23688999998743 233455667889999999998643
No 340
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.57 E-value=5.3e-05 Score=70.12 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++++|+.|+|||||++.|++.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=3.5e-05 Score=65.17 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+..+++.| +.|+||||+|||||+++|++.
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34556677 999999999999999999987
No 342
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.54 E-value=9e-05 Score=67.45 Aligned_cols=96 Identities=25% Similarity=0.212 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCccceeeeCCcchHHHhhhcCCCC-------C--CCcceeh
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-------A--VPAFLEI 92 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~---~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-------~--~~~~l~~ 92 (263)
..++++|+.++|||||++.|+|..... ...++.|+........+.... ... .|.... . ....+++
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~--~~~-~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCP--NCG-RYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECT--TTC-CEESSSBCTTTCCBCEEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccc--ccc-cccccccccccCcccccccEEEE
Confidence 589999999999999999999875322 111233333222111111000 000 011000 0 0136889
Q ss_pred hhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
+|+||.. .+.......+..+|.++.++++.+
T Consensus 88 iDtPGh~-------~f~~~~~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 88 IDAPGHE-------ALMTTMLAGASLMDGAILVIAANE 118 (410)
T ss_dssp EECSSHH-------HHHHHHHHCGGGCSEEEEEEETTS
T ss_pred EECCChH-------HHHHHHHhhhhhCCEEEEEEECCC
Confidence 9999843 223445556678899999999864
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.53 E-value=4.3e-05 Score=62.42 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.++||+|+|||||||+.++|+++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999984
No 344
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=8.8e-06 Score=72.11 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~ 73 (263)
..++|+||||+|||||+++|+|... +...+.+|.+...+.++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~-------~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ-------TNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT-------CCEEEEETTTCCSHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC-------CCEEEEechHhcCHHHH
Confidence 7899999999999999999998731 11234556555544443
No 345
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.52 E-value=5.8e-05 Score=68.59 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CC--------------CCccccCCccceeeeCCcchHHHhhhcCCCCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA---EN--------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~---~~--------------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~ 85 (263)
...+++++|+.|+|||||++.|++..... +. ..+.|+.. ..+.+. .
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~---------------~ 72 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYE---------------T 72 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEE---------------C
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEec---------------c
Confidence 44689999999999999999999741000 00 00111111 111111 0
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
-...+.++|+||... +.......++.+|.++.++++.+.
T Consensus 73 ~~~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 73 AKRHYSHVDCPGHAD-------YIKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp SSCEEEEEECCCSGG-------GHHHHHHHHTTCSSEEEEEETTTC
T ss_pred CCeEEEEEECCChHH-------HHHHHHHHHHHCCEEEEEEECCCC
Confidence 113688999999653 234445567889999999998643
No 346
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.51 E-value=3.4e-05 Score=68.14 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
..++..+.+|.+++|+|+||+||||++..|++.. .+..|.|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l-----------~~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY-----------AELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH-----------HHTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-----------HHCCCeEEEEeCC
Confidence 3566677889999999999999999999999984 5667777775543
No 347
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.51 E-value=3.5e-05 Score=67.31 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..|.+++|+|+|||||||++..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999884
No 348
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.51 E-value=6e-05 Score=60.71 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.5
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+++.+...+..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45666778899999999999999999999854
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.51 E-value=4.5e-05 Score=62.16 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++|+|+|||||||+.++|+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 37999999999999999999984
No 350
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.50 E-value=0.00015 Score=66.47 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+++++|+.|+|||||++.|++..
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHhhc
Confidence 589999999999999999998764
No 351
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.49 E-value=6.3e-05 Score=69.10 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++++|+.|+|||||++.|++.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
No 352
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=4.7e-05 Score=65.40 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=31.5
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
+..+++.| +.|+||||+|||||+++|++.. . .|.+.+.+..
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~-----------~--~~~i~~~~~~ 108 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEA-----------R--VPFITASGSD 108 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHT-----------T--CCEEEEEHHH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHc-----------C--CCEEEecHHH
Confidence 34456666 9999999999999999999873 2 5667666544
No 353
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.48 E-value=5.5e-05 Score=60.41 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+|+.++|+|++||||||+.++|.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999986
No 354
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.48 E-value=1.8e-05 Score=65.15 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=35.9
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccc--eeeeCC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA--RVNIPD 70 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G--~i~~~g 70 (263)
..+....+.+|..+.|+|++||||||+.+.|.+. +.|..| .+.+++
T Consensus 15 ~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~-----------l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 15 SERTELRNQRGLTIWLTGLSASGKSTLAVELEHQ-----------LVRDRRVHAYRLDG 62 (211)
T ss_dssp HHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHH-----------HHHHHCCCEEEECH
T ss_pred HHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHH-----------hccccCCcEEEECC
Confidence 3444566788999999999999999999999987 344566 566654
No 355
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.47 E-value=7.8e-05 Score=67.84 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=25.7
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHH--HcC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTL--TKL 47 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L--~G~ 47 (263)
+-|+.|+++.|+|+||||||||++.| .+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 67899999999999999999999955 454
No 356
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.44 E-value=6.4e-05 Score=68.85 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~~ 49 (263)
.+..|.+++|+|+||||||||+++|+++..
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 466789999999999999999999998753
No 357
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.36 E-value=0.00028 Score=58.59 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+|.|||.+|+|||||++.++.-
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 58999999999999999998854
No 358
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=7.6e-05 Score=65.73 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=26.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+...+.+| +.+|+|+||||||||+.+|..+
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 45567788 9999999999999999999855
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.36 E-value=0.0001 Score=57.59 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHH
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
+.+| ..+|+|+|||||||++.+|.
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4443 78999999999999999986
No 360
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.34 E-value=0.00027 Score=67.47 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=48.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCccccCCccceeeeCCcchHHHhhhcCCCCCCCcc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAEN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~---------------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (263)
-.++|+|+.|+|||||++.|+.....++. ..+.|+......+.+.+ .......
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~------------~dg~~~~ 74 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA------------KDGNTYK 74 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC------------TTSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc------------CCCCeEE
Confidence 37999999999999999999753111110 01112222222222110 0011136
Q ss_pred eehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 90 LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 90 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
++++||||.... .......++.+|.++.++|+.+.
T Consensus 75 inliDTPGh~dF-------~~ev~r~l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 75 LHLIDTPGHVDF-------SYEVSRALAACEGALLLIDASQG 109 (600)
T ss_dssp EEEECCCCSGGG-------HHHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECCCcHhH-------HHHHHHHHHhCCEEEEEEECCCC
Confidence 889999997542 23344557889999999998643
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.33 E-value=6.8e-05 Score=65.39 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~ 72 (263)
+|.+++++|+||+||||++..|++.. .+..|.+.+.+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-----------~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-----------KGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-----------HHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-----------HHcCCeEEEecCC
Confidence 78999999999999999999999984 5567777776544
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.31 E-value=0.00011 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..|+.++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 363
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.31 E-value=0.00023 Score=64.73 Aligned_cols=97 Identities=25% Similarity=0.214 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCccceeeeCCcchHHHhhhcCCCC-------C--CCccee
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-------A--VPAFLE 91 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~---~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~-------~--~~~~l~ 91 (263)
-.+++++|+.++|||||++.|+|..... ...++.|+........+... .... .|.... . ....++
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~--~~~~-~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC--PQCG-TYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEEC--TTTC-CEESSSBCTTSCCBCEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccc--cccc-cccccccccccCcccccccEEE
Confidence 3689999999999999999999875322 11133343322111111000 0000 011100 0 013688
Q ss_pred hhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 92 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
++|+||.. .+.......+..+|.++.++++.+
T Consensus 85 iiDtPGh~-------~f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 85 FVDSPGHE-------TLMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp EEECSSHH-------HHHHHHHTTCSCCSEEEEEEETTS
T ss_pred EEECCCHH-------HHHHHHHHhHhhCCEEEEEEECCC
Confidence 99999842 222334445567799999999864
No 364
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.31 E-value=0.00012 Score=67.96 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
.+++++|+.++|||||++.|++
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 365
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.29 E-value=0.00012 Score=59.62 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999865
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.28 E-value=0.00015 Score=58.27 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=25.1
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+..+|..+.|+|++||||||+.+.|++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999976
No 367
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.26 E-value=0.00013 Score=63.38 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..+.+|||+|++|||||||.+.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999884
No 368
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.25 E-value=0.00014 Score=65.87 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCC------CccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhh
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENF------PFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~--~~~------~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~ 95 (263)
..+++++|+.|+|||||++.|++..... +.+ +..+.+...|. ++.-.. ..|. .-...++++|+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~gi-Ti~~~~-----~~~~---~~~~~~~iiDt 73 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGI-TINAAH-----VEYS---TAARHYAHTDC 73 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTE-EEECEE-----EEEE---CSSCEEEEEEC
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCc-EEEeee-----EEec---cCCeEEEEEEC
Confidence 3589999999999999999999742100 000 00011111221 110000 0000 01135889999
Q ss_pred hccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
||... +.......++.+|.++.++++.+
T Consensus 74 pG~~~-------f~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 74 PGHAD-------YVKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp SSHHH-------HHHHHHHTSSCCSEEEEEEETTT
T ss_pred CChHH-------HHHHHHhhHhhCCEEEEEEECCC
Confidence 98643 22233445678999999999865
No 369
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.22 E-value=0.0003 Score=65.76 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcch---------HHHhhhcCCCCC
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF---------EWLCQLFKPKSA 85 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~---------~~l~~~~~~~~~ 85 (263)
..+..+++.| +.|+||||+|||||+++|++.. ..+.+.+++..+ ..+...|+....
T Consensus 57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~-------------~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~ 121 (499)
T 2dhr_A 57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA-------------RVPFITASGSDFVEMFVGVGAARVRDLFETAKR 121 (499)
T ss_dssp TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT-------------TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS
T ss_pred hhccCCCCce--EEEECCCCCCHHHHHHHHHHHh-------------CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3445566677 9999999999999999999873 134455544332 224445554332
Q ss_pred CCcceehhhhhcc
Q 024748 86 VPAFLEIHDIAGL 98 (263)
Q Consensus 86 ~~~~l~~~d~~g~ 98 (263)
....+.++|.+..
T Consensus 122 ~~p~il~IDEId~ 134 (499)
T 2dhr_A 122 HAPCIVFIDEIDA 134 (499)
T ss_dssp SSSCEEEEECGGG
T ss_pred cCCCEEEEehHHH
Confidence 2335677776643
No 370
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.00019 Score=59.69 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.5
Q ss_pred CcCCc-ccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 024748 13 AERPI-LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 13 ~~~~~-~~~i~~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
+...+ .+.+++|+.++|+|+||||||||+..++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33444 5778999999999999999999965554
No 371
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.18 E-value=0.0003 Score=67.16 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---------------CccccCCccceeeeCCcchHHHhhhcCCCCCCCcce
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENF---------------PFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~~~~~~~---------------~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l 90 (263)
.++|+|+.|+|||||++.|+.....+... .+.|+......+.+. ........+
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~------------~~~g~~~~l 73 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYK------------ASDGETYQL 73 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEE------------CTTSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEe------------cCCCCeEEE
Confidence 78999999999999999998642111100 111111111111111 000111368
Q ss_pred ehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 91 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
+++||||... +.......++.+|.++.|+|+.+.
T Consensus 74 ~liDTPGh~d-------F~~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 74 NFIDTPGHVD-------FSYEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp EEEECCCCGG-------GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred EEEECCCchH-------HHHHHHHHHHHCCEEEEEEECCCC
Confidence 8999999643 233445567889999999998643
No 372
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.17 E-value=0.00062 Score=66.27 Aligned_cols=90 Identities=21% Similarity=0.119 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------CCccccCCccceeeeCCcchHHHhhhcCCCCC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAEN------------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~~~~~------------------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~ 85 (263)
--.++|+|+.|+|||||++.|+.....+.. ..+.|+......+.+.+.. ...
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~~ 79 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQY 79 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------ccC
Confidence 358999999999999999999643111100 0011111111111111100 001
Q ss_pred CCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 86 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
....+.++||+|.... .......++.+|.++.++++.+
T Consensus 80 ~~~~i~liDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDF-------TIEVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CceeEEEEeCCCccch-------HHHHHHHHHHCCEEEEEEeCCC
Confidence 1146889999996532 2334556688999999999864
No 373
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.17 E-value=0.00026 Score=70.33 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCC---------------ccccCCccceeeeCCcchHHHhhhcCCCCCCCc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFP---------------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPA 88 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~-~~~~---------------~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~ 88 (263)
-.++|+|+.|+|||||++.|++....+ +..+ +.|+......+.+.... ..+...-........
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD-EDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH-HHHHHCSSCCCSSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc-cccccccccccCCCc
Confidence 479999999999999999998642222 1111 11222222222221000 000000000001123
Q ss_pred ceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 89 ~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
.+.++||+|..... ......++.+|.++.|+|+.+.
T Consensus 99 ~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 99 LINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred eEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 58899999976532 2345566889999999998643
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.13 E-value=0.00025 Score=59.38 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=26.0
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
....|..++|.|++||||||+++.|....
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999999999874
No 375
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.12 E-value=0.00026 Score=59.26 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 376
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00016 Score=63.76 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 024748 26 KIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G 46 (263)
.+.|.||||+||||++++|++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999999
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00027 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.099 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++|.|++||||||+.+.|+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999854
No 378
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.09 E-value=0.00023 Score=67.23 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g 70 (263)
+|..+.|+||||+|||||+++|++.. .+..|.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l-----------~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL-----------GRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH-----------TCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-----------CCCeEEEEecc
Confidence 68899999999999999999999883 55566665554
No 379
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00029 Score=55.07 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 024748 25 LKIGIVGLPNVGKSTLFNTL 44 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L 44 (263)
++++|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 380
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.06 E-value=0.00034 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 381
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.05 E-value=0.00036 Score=55.90 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.++..+.|.|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
No 382
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00041 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
++..+.|.|++||||||+.+.|...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999865
No 383
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.02 E-value=0.00035 Score=57.34 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 024748 25 LKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~ 45 (263)
...+|+|+|||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999985
No 384
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.01 E-value=0.00045 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|..++|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999865
No 385
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.00 E-value=0.00039 Score=56.12 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
++++|+|++||||||+.+.|+..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHh
Confidence 47899999999999999999874
No 386
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.00 E-value=0.00034 Score=61.96 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 024748 25 LKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~ 45 (263)
.+.+|+|||||||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 377899999999999999874
No 387
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.99 E-value=0.00044 Score=66.00 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCccceeeeCCcchHHHhhhc-CCC--CCCCcceehhhhhccccC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF-KPK--SAVPAFLEIHDIAGLVRG 101 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~-~~~--~~~~~~l~~~d~~g~~~~ 101 (263)
-+++|+|+.|+|||||++.|++.... .+....+.++.|...+.-..+....... ... ......++++||||....
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 48999999999999999999976321 1111111223333322110000000000 000 000125899999997544
Q ss_pred cccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
..... ..++.+|.++.|+++.+
T Consensus 84 ~~~~~-------r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTLRK-------RGGALADLAILIVDINE 105 (594)
T ss_dssp TTSBC-------SSSBSCSEEEEEEETTT
T ss_pred HHHHH-------HHHhhCCEEEEEEECCC
Confidence 32211 12356888889988865
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.99 E-value=0.00036 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++|+|++|||||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999976
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.00043 Score=56.95 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+.+++|.|++||||||+.+.|..+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999863
No 390
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.96 E-value=0.00033 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=28.7
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+...+..|..+.|+|+||+|||||+++|++..
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 345556788999999999999999999999985
No 391
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.94 E-value=0.00054 Score=55.53 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....+|+|.|++||||||+.+.|+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999843
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00057 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..|..|+|.|++||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999974
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00054 Score=55.57 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+|..|+|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 394
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.89 E-value=0.00063 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999743
No 395
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.89 E-value=0.00059 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
..+.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.86 E-value=0.00066 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..|..|+|.|++||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999984
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.85 E-value=0.00038 Score=58.97 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....+..+.|+|+|||||||+.+.|...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999875
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.83 E-value=0.00063 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
++++|.|++||||||+.+.|+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.83 E-value=0.00071 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|+.+.|+|++||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999754
No 400
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.82 E-value=0.00066 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+..|+|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 401
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.82 E-value=0.00041 Score=55.81 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=23.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.++++.+|+|.|++||||||+.+.|+..
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999854
No 402
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.82 E-value=0.00053 Score=61.98 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=29.4
Q ss_pred CcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 16 ~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+.+..+.+|++++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 57778899999999999999999999999876
No 403
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00071 Score=53.79 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..+..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999983
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.81 E-value=0.00068 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
++++|.|++||||||+.+.|+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.80 E-value=0.0008 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+++|+|+|++||||||+.+.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999753
No 406
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00081 Score=54.24 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+|+|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999854
No 407
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.76 E-value=0.00084 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+..+.|+|++||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999743
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.00071 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++|+|++|||||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 409
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.73 E-value=0.00087 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+..+.|+|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999843
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.72 E-value=0.00075 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~ 47 (263)
++.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 411
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.72 E-value=0.00048 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.2
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++...+ +.+++++|+||+||||++..|++..
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444455 8999999999999999999999873
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.72 E-value=0.0004 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++|.|++||||||+++.|...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999865
No 413
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.70 E-value=0.00078 Score=53.71 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+.+|+|+|++||||||+-+.|+.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.69 E-value=0.00094 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+.|+|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 415
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.69 E-value=0.001 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
++++|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.68 E-value=0.00091 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..|.|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 417
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.68 E-value=0.00076 Score=60.23 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=26.1
Q ss_pred cccccCCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~--vgivG~nGaGKSTLl~~L~G~ 47 (263)
+...++.|+. ++|+|++||||||+.++|++.
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3455677776 999999999999999999875
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.67 E-value=0.001 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
...+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999984
No 419
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.65 E-value=0.0011 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
++++|.|.+||||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.64 E-value=0.00074 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|.|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999743
No 421
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.00093 Score=56.67 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+.|+|+||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.63 E-value=0.0011 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 423
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.62 E-value=0.0015 Score=66.60 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC----C----CCCCCccccCCccceeeeCCcchHHHhhhcCCCCCCCcceehhhh
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKLAI----P----AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~~~----~----~~~~~~~t~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~l~~~d~ 95 (263)
..+++++|+.|+|||||++.|++... . .+..+..+.+...|. ++.-.. ..|. .-...++++|+
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGI-TIdva~-----v~f~---~~~~kI~IIDT 366 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI-TINTSH-----VEYD---TPTRHYAHVDC 366 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------CCSC-----EEEE---CSSCEEEEEEC
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCce-eEEEEE-----EEEc---CCCEEEEEEEC
Confidence 36899999999999999999997410 0 000011111112221 100000 0000 01136889999
Q ss_pred hccccCcccccchHHHHHHHHhhhcceeEEeeccC
Q 024748 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (263)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~ 130 (263)
||... ........++.+|.++.|+++.+
T Consensus 367 PGHed-------F~~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 367 PGHAD-------YVKNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp CCHHH-------HHHHHHHTSCCCSEEEEEEETTT
T ss_pred CChHH-------HHHHHHHHHhhCCEEEEEEcCCc
Confidence 98643 22334445678999999999864
No 424
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0012 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..+++++|.|++||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999974
No 425
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.00097 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
-+.|+|+||+|||||.++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48899999999999999999763
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.61 E-value=0.0012 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+..+++|.|++||||||+.+.|+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 427
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.60 E-value=0.0031 Score=59.59 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC----------------CC------CCccccCCccceeeeCCcchHHHhhhcCC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA----------------EN------FPFCTIEPNEARVNIPDERFEWLCQLFKP 82 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~~~~~----------------~~------~~~~t~~p~~G~i~~~g~~~~~l~~~~~~ 82 (263)
-.+||||+.++|||||.-.|+-.--.+ .+ .-+.|+....-.+.+.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------------ 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------------ 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------------
Confidence 579999999999999999985221000 00 01111221111222221
Q ss_pred CCCCCcceehhhhhccccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 83 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
..++++||||..... ..+...++-+|.++.|+++.+.
T Consensus 100 -----~~iNlIDTPGHvDF~-------~Ev~raL~~~DgAvlVvda~~G 136 (548)
T 3vqt_A 100 -----RVVNLLDTPGHQDFS-------EDTYRVLTAVDSALVVIDAAKG 136 (548)
T ss_dssp -----EEEEEECCCCGGGCS-------HHHHHHHHSCSEEEEEEETTTB
T ss_pred -----EEEEEEeCCCcHHHH-------HHHHHHHHhcCceEEEeecCCC
Confidence 358899999976543 4556777889999999998544
No 428
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.58 E-value=0.00095 Score=59.69 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.8
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|-++.|.++.|.|+||+|||||+..++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999876
No 429
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.0011 Score=57.26 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+..+.|.|+|||||||+.+.|+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999853
No 430
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.57 E-value=0.0011 Score=60.64 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+.+++++|++||||||++..|++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999999884
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.55 E-value=0.0013 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|+.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999753
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.53 E-value=0.0014 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
++++|.|++||||||+.+.|+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 433
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.52 E-value=0.0032 Score=60.57 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCccceeeeCCcchHHHhhh-----cCCCCCCCcceehhhhhc
Q 024748 26 KIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~---G~~~~~~~~~~~t~~p~~G~i~~~g~~~~~l~~~-----~~~~~~~~~~l~~~d~~g 97 (263)
.+||||+-++|||||.-.|+ |....... .+.|.-..+-....+-..+ ..+-..-...++++||||
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~-------v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGS-------VDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSS-------CCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccc-------cccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCC
Confidence 47999999999999999884 54211100 0111101110001000000 000000123588999999
Q ss_pred cccCcccccchHHHHHHHHhhhcceeEEeeccCC
Q 024748 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (263)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~d~~l~vv~~~~~ 131 (263)
-.. +.......++-+|..+.|+|+.+.
T Consensus 77 H~D-------F~~Ev~raL~~~DgavlVVDa~~G 103 (638)
T 3j25_A 77 HMD-------FLAEVYRSLSVLDGAILLISAKDG 103 (638)
T ss_dssp SSS-------THHHHHHHHTTCSEEECCEESSCT
T ss_pred cHH-------HHHHHHHHHHHhCEEEEEEeCCCC
Confidence 653 345566778899999999998644
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.49 E-value=0.0015 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 435
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.47 E-value=0.0016 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+++.|.|++||||||+.+.|+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999743
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.46 E-value=0.0016 Score=55.26 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
.+..|.|.|++||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.46 E-value=0.0016 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|++.|+|||||||+|..+.|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999854
No 438
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.44 E-value=0.0033 Score=53.15 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.4
Q ss_pred CCcEEEEEcCC---------CCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLP---------NVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~n---------GaGKSTLl~~L~G~ 47 (263)
.-.+|+|||.+ |||||||++.+++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 34689999999 99999999999983
No 439
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.44 E-value=0.0016 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++|+|++|||||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.43 E-value=0.0018 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999874
No 441
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.43 E-value=0.0015 Score=53.60 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
-.+++|+|.+|||||||++.+++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999865
No 442
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.42 E-value=0.00067 Score=63.55 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.8
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+...+.+| ..+|+|+||||||||+.+|..+
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34455677 9999999999999999999654
No 443
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.00096 Score=58.78 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=24.9
Q ss_pred ccccCCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 024748 18 LGRFSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 18 ~~~i~~g~~--vgivG~nGaGKSTLl~~L~G~ 47 (263)
...+..|.. +.|.||||+||||+++++++.
T Consensus 38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 38 RKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 334456665 999999999999999999987
No 444
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.40 E-value=0.002 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
++++|.|.+||||||+-+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.37 E-value=0.0023 Score=53.25 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=22.9
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....+..+.|+|++||||||+.+.|+..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345689999999999999999999854
No 446
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.34 E-value=0.0019 Score=57.53 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.5
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|.++.|..+.|.|+||+|||||...++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998887744
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.34 E-value=0.0021 Score=55.74 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+..+.|.||||+|||||.++|++.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3567788999999999999999999976
No 448
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.0017 Score=64.07 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=26.5
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+..+..+.|+|+||+|||||+++|++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46788999999999999999999999974
No 449
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.29 E-value=0.0022 Score=57.15 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
...+++|+|++|+|||||++.|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999754
No 450
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.29 E-value=0.0027 Score=52.79 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.1
Q ss_pred cccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 17 ~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....++...++.|+|||||||+|..+.|+..
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3344556678899999999999999999844
No 451
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.26 E-value=0.0025 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
...+|||.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 452
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.26 E-value=0.0048 Score=54.51 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
++.|+|..|+|||||++.+.+..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~ 23 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM 23 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999887653
No 453
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.22 E-value=0.0014 Score=60.42 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.7
Q ss_pred cCCcccccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 14 ~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
...+.+.+.+|+.+.|.|+||+|||||+..+++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455677999999999999999999999999876
No 454
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.0017 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+.+++++|+|||||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999965
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.11 E-value=0.0032 Score=51.16 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++||.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999843
No 456
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.10 E-value=0.0021 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+..+.|+|++||||||+++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999764
No 457
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.08 E-value=0.0031 Score=56.46 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 024748 25 LKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~ 45 (263)
-...|+|+|||||||+|.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999985
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.07 E-value=0.0036 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G 46 (263)
..+|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999983
No 459
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.04 E-value=0.0032 Score=52.66 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
....|..|.|.|++||||||+.+.|...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999754
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.01 E-value=0.004 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G 46 (263)
.+..||+|++||||||+.+.|+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 47899999999999999999964
No 461
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.97 E-value=0.0021 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|..+.|.|+.|+|||||++.+...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 4679999999999999999999854
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.96 E-value=0.0048 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|.|++|+|||||++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 463
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.93 E-value=0.0036 Score=58.06 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.2
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+++.| +.|+||||+|||||.+++++.
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34444 889999999999999999985
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.90 E-value=0.0039 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|.|++|+|||||++.+++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 465
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.89 E-value=0.0051 Score=54.50 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=26.6
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|.++.|.++.|.|++|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999998864
No 466
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.0032 Score=52.39 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred ccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 20 RFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 20 ~i~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
.+..|..+.++|++||||||++.+++.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345689999999999999998887753
No 467
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.86 E-value=0.0061 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|.|++|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999865
No 468
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.86 E-value=0.0049 Score=52.85 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+..+.|.||||+|||||.+++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999763
No 469
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.85 E-value=0.0037 Score=58.48 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCcccccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 15 ~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
.++.+.+..+.++.|.|.+||||||++|.|..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 35667777889999999999999999999875
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.83 E-value=0.0053 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|..|.|-|++||||||+.+.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999654
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.83 E-value=0.0077 Score=54.80 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.....+.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999854
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.83 E-value=0.0051 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G 46 (263)
..+.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 473
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.83 E-value=0.0051 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
.+.|.|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999763
No 474
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.78 E-value=0.005 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 475
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.75 E-value=0.0039 Score=57.63 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
-.|.+++|+|++|+|||||++.|++.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhh
Confidence 36899999999999999999999765
No 476
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.69 E-value=0.0062 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.|.|++|+|||||+++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999999875
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.65 E-value=0.0035 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+.+|||.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 478
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.007 Score=51.47 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.6
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 21 i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+..+..+-|.|++|+|||||.++++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356677999999999999999999876
No 479
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.62 E-value=0.0067 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.|.|+||+||||+.++|++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999986
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.60 E-value=0.0073 Score=50.35 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
|..++|-|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999999865
No 481
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.60 E-value=0.0066 Score=53.22 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 19 ~~i~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+.++.|..+.|.|++|+|||||...++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 67889999999999999999999988754
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.60 E-value=0.004 Score=52.74 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+..|+|.|..||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999865
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.58 E-value=0.0079 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
-.|..+.|.|++||||||+.+.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998754
No 484
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.51 E-value=0.009 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|..|.|-|++||||||+.+.|...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999754
No 485
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.46 E-value=0.0098 Score=49.27 Aligned_cols=27 Identities=37% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~~ 48 (263)
..|..+.+-|++||||||+.+.|....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999998653
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.45 E-value=0.005 Score=53.87 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=29.1
Q ss_pred CCcCCcccccCCCcEEEEEcCCCCcHHHHHHHHHc
Q 024748 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (263)
Q Consensus 12 ~~~~~~~~~i~~g~~vgivG~nGaGKSTLl~~L~G 46 (263)
+....+.+.+.+|+.+.|.|+||+|||||...++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 33445567899999999999999999999888764
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.39 E-value=0.0082 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 24 g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+..+.|.|++|+|||||++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999865
No 488
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.39 E-value=0.0073 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+..+.|.|++|+|||||++++++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999875
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.34 E-value=0.011 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..|..|.|.|.+||||||+.+.|...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999754
No 490
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.25 E-value=0.013 Score=48.44 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.7
Q ss_pred CCCcCCcc-cccCCCcEEEEEcCCCCcHHHHHHHHH
Q 024748 11 APAERPIL-GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 11 ~~~~~~~~-~~i~~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
-+.....+ |-+++|..+-|.|+||+|||||.-.++
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34455555 589999999999999999999976543
No 491
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.20 E-value=0.011 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..++|+|++|||||||.+.|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37999999999999999999865
No 492
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.20 E-value=0.0071 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+++|+|++|+||||+++.|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 493
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.19 E-value=0.011 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 024748 26 KIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 26 ~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.+.|.|++|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999754
No 494
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.19 E-value=0.012 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.|+|++|||||||-+.|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 495
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.17 E-value=0.011 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~ 45 (263)
...+|+|+|++||||||+++.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999999
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.16 E-value=0.013 Score=48.90 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 22 ~~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.....+-|.|++|+||||+.++++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999865
No 497
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.09 E-value=0.011 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 024748 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 25 ~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
..+.|.|+||+||||+++++++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999876
No 498
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.01 E-value=0.014 Score=48.96 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH-----cCCCCC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLT-----KLAIPA 51 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~-----G~~~~~ 51 (263)
...++.++|+.|||||||++.|+ |..+.+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~v 46 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAY 46 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34688999999999999999998 665543
No 499
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.01 E-value=0.013 Score=47.96 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
.|..+.|+|++|+|||||...|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999865
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.00 E-value=0.015 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 024748 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (263)
Q Consensus 23 ~g~~vgivG~nGaGKSTLl~~L~G~ 47 (263)
+|..|+|=|..||||||+.+.|...
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999864
Done!