Query 024751
Match_columns 263
No_of_seqs 131 out of 1284
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 1.8E-58 3.9E-63 394.7 23.7 233 16-261 6-241 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 1.9E-57 4.1E-62 388.2 22.3 217 14-261 3-220 (280)
3 KOG1575 Voltage-gated shaker-l 100.0 2E-47 4.3E-52 332.4 23.1 227 8-259 6-277 (336)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.6E-47 7.7E-52 329.5 24.1 205 27-260 2-207 (267)
5 COG0667 Tas Predicted oxidored 100.0 3.5E-47 7.6E-52 335.7 23.6 220 14-260 1-262 (316)
6 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.2E-46 6.9E-51 324.7 24.0 213 15-260 5-217 (275)
7 TIGR01293 Kv_beta voltage-depe 100.0 1.3E-45 2.9E-50 327.2 23.5 216 22-260 5-269 (317)
8 PRK09912 L-glyceraldehyde 3-ph 100.0 2.9E-45 6.3E-50 328.4 25.1 224 13-260 12-285 (346)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 6.2E-45 1.3E-49 318.1 24.4 219 17-260 2-240 (285)
10 PRK10625 tas putative aldo-ket 100.0 4.9E-45 1.1E-49 327.2 24.0 236 14-260 1-292 (346)
11 PLN02587 L-galactose dehydroge 100.0 3.8E-44 8.2E-49 317.5 22.7 222 17-260 2-249 (314)
12 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.6E-43 3.5E-48 308.8 18.0 209 30-260 1-236 (283)
13 PRK10376 putative oxidoreducta 100.0 1.7E-42 3.6E-47 303.7 23.3 212 16-260 9-241 (290)
14 PRK14863 bifunctional regulato 100.0 8.3E-42 1.8E-46 299.2 18.4 209 25-260 2-235 (292)
15 COG4989 Predicted oxidoreducta 100.0 3.1E-42 6.7E-47 283.9 14.1 222 14-260 1-246 (298)
16 KOG1576 Predicted oxidoreducta 100.0 2.3E-35 5.1E-40 245.0 15.6 201 14-237 22-241 (342)
17 COG1453 Predicted oxidoreducta 100.0 5.5E-35 1.2E-39 253.2 15.9 194 16-234 3-211 (391)
18 KOG3023 Glutamate-cysteine lig 98.8 2.3E-08 5E-13 82.9 9.6 139 87-225 73-227 (285)
19 PF07021 MetW: Methionine bios 93.1 0.84 1.8E-05 37.5 8.7 100 111-229 64-170 (193)
20 cd03319 L-Ala-DL-Glu_epimerase 91.1 10 0.00023 33.4 14.6 152 40-229 133-290 (316)
21 PRK08392 hypothetical protein; 89.6 11 0.00024 31.3 16.5 181 45-261 16-211 (215)
22 cd03316 MR_like Mandelate race 89.3 16 0.00034 32.8 15.8 149 41-226 139-299 (357)
23 cd01973 Nitrogenase_VFe_beta_l 88.4 13 0.00027 34.9 12.9 116 64-196 66-193 (454)
24 PRK06361 hypothetical protein; 86.9 16 0.00035 30.1 13.8 179 45-260 12-197 (212)
25 PRK08609 hypothetical protein; 85.3 37 0.00081 32.8 16.8 185 45-261 351-555 (570)
26 cd01974 Nitrogenase_MoFe_beta 83.1 40 0.00086 31.4 13.8 169 63-257 64-280 (435)
27 cd03322 rpsA The starvation se 82.8 36 0.00078 30.7 13.8 146 40-227 125-274 (361)
28 PRK00912 ribonuclease P protei 82.6 14 0.0003 31.2 9.5 171 42-260 15-203 (237)
29 PRK14017 galactonate dehydrata 82.3 29 0.00063 31.6 12.1 149 41-226 124-287 (382)
30 COG1748 LYS9 Saccharopine dehy 80.5 11 0.00023 34.6 8.4 82 41-134 77-159 (389)
31 PRK07945 hypothetical protein; 78.6 49 0.0011 29.6 18.8 182 42-261 110-321 (335)
32 PRK04452 acetyl-CoA decarbonyl 78.5 31 0.00067 30.8 10.4 75 173-260 129-207 (319)
33 COG1140 NarY Nitrate reductase 77.7 1.5 3.3E-05 39.5 2.0 55 165-220 261-317 (513)
34 TIGR02932 vnfK_nitrog V-contai 77.6 63 0.0014 30.3 13.4 117 64-196 69-197 (457)
35 PF03102 NeuB: NeuB family; I 77.0 19 0.00042 30.7 8.5 116 40-183 53-185 (241)
36 cd03315 MLE_like Muconate lact 76.3 48 0.001 28.3 15.2 152 41-229 85-242 (265)
37 cd01965 Nitrogenase_MoFe_beta_ 76.2 65 0.0014 29.8 14.4 116 65-197 62-188 (428)
38 KOG0259 Tyrosine aminotransfer 75.9 59 0.0013 29.8 11.4 51 40-97 78-135 (447)
39 PF01175 Urocanase: Urocanase; 75.5 25 0.00054 33.3 9.2 123 46-202 105-258 (546)
40 cd03327 MR_like_2 Mandelate ra 75.1 62 0.0013 28.9 13.4 148 41-225 120-280 (341)
41 TIGR00190 thiC thiamine biosyn 74.0 20 0.00044 32.8 8.1 100 40-179 74-184 (423)
42 TIGR00381 cdhD CO dehydrogenas 74.0 72 0.0016 29.2 13.7 129 105-260 128-272 (389)
43 PRK13796 GTPase YqeH; Provisio 74.0 69 0.0015 29.0 12.8 122 40-187 54-181 (365)
44 COG0635 HemN Coproporphyrinoge 73.8 36 0.00078 31.5 10.0 73 100-180 199-276 (416)
45 KOG0369 Pyruvate carboxylase [ 73.1 31 0.00068 33.9 9.4 147 42-231 42-197 (1176)
46 cd03324 rTSbeta_L-fuconate_deh 72.8 80 0.0017 29.2 13.8 149 40-225 195-352 (415)
47 COG2089 SpsE Sialic acid synth 72.5 58 0.0013 29.1 10.4 122 40-189 87-225 (347)
48 PLN00191 enolase 71.6 91 0.002 29.3 13.2 94 103-224 296-394 (457)
49 TIGR01928 menC_lowGC/arch o-su 71.0 76 0.0016 28.2 14.0 150 41-229 132-285 (324)
50 TIGR02931 anfK_nitrog Fe-only 70.5 96 0.0021 29.1 13.6 116 64-196 72-200 (461)
51 TIGR01862 N2-ase-Ialpha nitrog 70.1 92 0.002 29.0 12.0 163 65-255 98-290 (443)
52 CHL00076 chlB photochlorophyll 69.9 1E+02 0.0023 29.4 12.5 170 59-255 59-266 (513)
53 cd03325 D-galactonate_dehydrat 69.1 87 0.0019 28.1 14.2 149 41-226 123-286 (352)
54 PRK13352 thiamine biosynthesis 67.9 37 0.00079 31.3 8.4 107 40-186 74-194 (431)
55 PRK02910 light-independent pro 66.5 1.2E+02 0.0026 28.9 12.2 165 66-257 67-263 (519)
56 cd03174 DRE_TIM_metallolyase D 65.9 34 0.00074 29.0 7.7 102 103-225 17-135 (265)
57 PRK07535 methyltetrahydrofolat 64.4 94 0.002 26.8 11.2 134 104-260 24-158 (261)
58 COG3623 SgaU Putative L-xylulo 63.3 28 0.00061 29.6 6.3 72 24-98 66-156 (287)
59 PF00809 Pterin_bind: Pterin b 63.2 52 0.0011 27.2 8.1 69 154-228 56-126 (210)
60 cd00308 enolase_like Enolase-s 62.8 53 0.0011 27.4 8.2 70 158-229 134-207 (229)
61 PRK13602 putative ribosomal pr 62.6 17 0.00038 25.4 4.3 58 161-225 3-60 (82)
62 PRK05692 hydroxymethylglutaryl 62.0 49 0.0011 29.0 8.0 96 108-222 28-137 (287)
63 cd00739 DHPS DHPS subgroup of 61.9 1E+02 0.0022 26.4 14.1 136 104-260 23-170 (257)
64 cd03321 mandelate_racemase Man 61.2 1.2E+02 0.0027 27.1 11.5 148 41-225 141-295 (355)
65 PRK06740 histidinol-phosphatas 60.7 1E+02 0.0022 27.5 10.0 137 109-256 156-317 (331)
66 PRK09061 D-glutamate deacylase 59.7 1.4E+02 0.003 28.4 11.2 111 45-178 171-285 (509)
67 COG0159 TrpA Tryptophan syntha 59.6 1.2E+02 0.0026 26.4 10.1 121 105-256 2-150 (265)
68 PF02679 ComA: (2R)-phospho-3- 59.5 30 0.00066 29.6 6.0 79 42-131 83-169 (244)
69 PRK05414 urocanate hydratase; 59.4 34 0.00074 32.4 6.7 121 48-202 117-268 (556)
70 PRK08446 coproporphyrinogen II 58.3 1.3E+02 0.0028 27.0 10.3 120 46-180 98-231 (350)
71 TIGR01228 hutU urocanate hydra 58.3 35 0.00076 32.2 6.6 122 47-202 107-259 (545)
72 PLN02746 hydroxymethylglutaryl 57.9 67 0.0015 29.0 8.3 98 106-222 68-179 (347)
73 COG0422 ThiC Thiamine biosynth 57.8 1.5E+02 0.0033 27.1 13.3 143 33-223 68-222 (432)
74 TIGR01286 nifK nitrogenase mol 57.8 1.8E+02 0.0039 27.8 12.2 119 61-196 119-252 (515)
75 TIGR01283 nifE nitrogenase mol 57.5 1.7E+02 0.0036 27.4 13.5 162 64-254 101-295 (456)
76 PRK14476 nitrogenase molybdenu 57.4 1.7E+02 0.0037 27.5 13.2 114 64-195 72-199 (455)
77 PRK14461 ribosomal RNA large s 56.6 1.1E+02 0.0023 28.0 9.3 98 125-229 231-352 (371)
78 TIGR00735 hisF imidazoleglycer 56.2 1.3E+02 0.0028 25.7 12.3 64 158-221 188-253 (254)
79 PRK07379 coproporphyrinogen II 55.4 1.1E+02 0.0025 28.0 9.6 122 46-180 115-255 (400)
80 TIGR01278 DPOR_BchB light-inde 55.4 1.8E+02 0.0038 27.8 11.1 146 66-228 67-243 (511)
81 COG2159 Predicted metal-depend 55.3 1.5E+02 0.0031 26.1 10.7 114 115-253 55-191 (293)
82 COG0135 TrpF Phosphoribosylant 54.8 1.1E+02 0.0023 25.6 8.4 80 116-222 19-102 (208)
83 cd01976 Nitrogenase_MoFe_alpha 54.8 1.8E+02 0.0039 26.9 13.5 168 64-255 78-271 (421)
84 PRK08776 cystathionine gamma-s 54.7 1.7E+02 0.0037 26.9 10.6 74 155-229 110-186 (405)
85 PRK10550 tRNA-dihydrouridine s 54.6 1.6E+02 0.0034 26.2 14.2 132 40-193 72-219 (312)
86 PTZ00081 enolase; Provisional 54.6 1.9E+02 0.0041 27.1 16.4 94 102-223 281-381 (439)
87 cd02801 DUS_like_FMN Dihydrour 54.4 1.2E+02 0.0027 24.9 9.7 128 41-193 65-208 (231)
88 COG5310 Homospermidine synthas 53.7 1.3E+02 0.0027 27.3 8.9 80 40-134 46-125 (481)
89 cd07944 DRE_TIM_HOA_like 4-hyd 53.0 1.5E+02 0.0032 25.5 9.6 106 106-224 20-128 (266)
90 COG1149 MinD superfamily P-loo 52.4 29 0.00064 30.2 4.8 50 178-229 201-250 (284)
91 cd01822 Lysophospholipase_L1_l 52.1 94 0.002 24.1 7.6 87 168-255 37-137 (177)
92 cd00423 Pterin_binding Pterin 52.1 1.5E+02 0.0033 25.3 14.3 108 103-228 22-130 (258)
93 PRK07328 histidinol-phosphatas 51.9 1.5E+02 0.0033 25.3 15.4 120 44-174 19-159 (269)
94 cd01981 Pchlide_reductase_B Pc 51.3 2E+02 0.0044 26.5 12.4 160 67-255 68-265 (430)
95 cd03323 D-glucarate_dehydratas 51.1 74 0.0016 29.2 7.6 69 157-227 249-321 (395)
96 PRK05283 deoxyribose-phosphate 50.3 1.3E+02 0.0029 25.9 8.5 76 41-124 144-227 (257)
97 PF14871 GHL6: Hypothetical gl 50.1 58 0.0013 25.0 5.8 22 208-229 47-68 (132)
98 cd01821 Rhamnogalacturan_acety 50.1 1.3E+02 0.0028 24.0 8.7 87 169-255 36-148 (198)
99 PRK13347 coproporphyrinogen II 50.0 1.2E+02 0.0025 28.4 8.9 124 46-180 152-291 (453)
100 PF01904 DUF72: Protein of unk 49.5 1.6E+02 0.0034 24.7 9.1 67 57-132 19-95 (230)
101 cd03318 MLE Muconate Lactonizi 49.4 2E+02 0.0043 25.9 13.2 69 157-227 227-299 (365)
102 PRK10528 multifunctional acyl- 48.5 82 0.0018 25.3 6.8 90 164-255 40-144 (191)
103 PRK09058 coproporphyrinogen II 47.8 2.4E+02 0.0051 26.4 10.6 123 46-178 163-302 (449)
104 PRK00164 moaA molybdenum cofac 47.4 2E+02 0.0043 25.4 15.9 161 40-221 49-226 (331)
105 PRK08208 coproporphyrinogen II 47.2 1.8E+02 0.0039 26.9 9.7 122 46-180 141-275 (430)
106 PRK01018 50S ribosomal protein 46.9 57 0.0012 23.6 5.0 59 159-224 6-64 (99)
107 PRK06294 coproporphyrinogen II 46.5 1.8E+02 0.0038 26.4 9.3 122 46-180 103-243 (370)
108 PF00682 HMGL-like: HMGL-like 46.5 1.6E+02 0.0035 24.5 8.5 96 106-223 14-126 (237)
109 PF00113 Enolase_C: Enolase, C 46.1 1.4E+02 0.0029 26.4 8.1 101 102-228 133-238 (295)
110 TIGR03677 rpl7ae 50S ribosomal 46.1 88 0.0019 23.4 6.1 64 155-224 12-75 (117)
111 COG4626 Phage terminase-like p 45.6 96 0.0021 29.8 7.5 79 151-229 409-487 (546)
112 TIGR00126 deoC deoxyribose-pho 45.4 1.3E+02 0.0028 25.1 7.6 73 40-122 129-205 (211)
113 cd04731 HisF The cyclase subun 45.4 1.8E+02 0.004 24.3 14.2 47 26-79 70-117 (243)
114 PF00578 AhpC-TSA: AhpC/TSA fa 45.0 1.2E+02 0.0025 21.9 6.8 39 156-194 43-84 (124)
115 PRK06015 keto-hydroxyglutarate 44.5 62 0.0013 26.8 5.5 60 157-223 42-102 (201)
116 COG1167 ARO8 Transcriptional r 44.3 2.7E+02 0.0059 26.0 14.9 152 40-228 104-270 (459)
117 PRK15072 bifunctional D-altron 44.3 91 0.002 28.6 7.2 69 157-227 245-317 (404)
118 cd06543 GH18_PF-ChiA-like PF-C 43.9 2.3E+02 0.0049 24.9 16.5 173 30-229 71-264 (294)
119 TIGR01182 eda Entner-Doudoroff 43.6 76 0.0016 26.3 5.9 60 157-223 46-106 (204)
120 PRK13958 N-(5'-phosphoribosyl) 43.3 1.2E+02 0.0026 25.1 7.1 66 114-201 16-83 (207)
121 PF04748 Polysacc_deac_2: Dive 42.0 2E+02 0.0044 23.9 9.2 92 32-129 63-182 (213)
122 PRK05660 HemN family oxidoredu 42.0 2.7E+02 0.0058 25.3 10.9 120 47-181 108-244 (378)
123 PF13380 CoA_binding_2: CoA bi 41.9 1.4E+02 0.0031 22.0 6.9 21 205-225 89-109 (116)
124 COG1038 PycA Pyruvate carboxyl 41.9 1.8E+02 0.0039 29.6 8.8 150 42-231 16-171 (1149)
125 cd07948 DRE_TIM_HCS Saccharomy 41.6 2.3E+02 0.005 24.4 9.1 98 103-225 20-132 (262)
126 PF02593 dTMP_synthase: Thymid 41.1 2.2E+02 0.0047 24.0 9.1 89 161-256 46-134 (217)
127 TIGR01282 nifD nitrogenase mol 41.1 3.1E+02 0.0068 25.8 12.4 163 65-255 112-306 (466)
128 cd07939 DRE_TIM_NifV Streptomy 40.7 62 0.0013 27.6 5.2 28 90-119 155-182 (259)
129 cd07939 DRE_TIM_NifV Streptomy 40.7 2.3E+02 0.005 24.1 11.6 97 107-227 21-132 (259)
130 PF01248 Ribosomal_L7Ae: Ribos 40.2 74 0.0016 22.4 4.8 63 157-225 3-65 (95)
131 TIGR02534 mucon_cyclo muconate 39.9 2.8E+02 0.0061 24.9 13.0 69 158-228 227-299 (368)
132 PF13378 MR_MLE_C: Enolase C-t 39.7 55 0.0012 23.7 4.1 51 176-229 3-56 (111)
133 COG1751 Uncharacterized conser 38.9 88 0.0019 24.8 5.1 69 44-121 15-85 (186)
134 cd03328 MR_like_3 Mandelate ra 38.6 2.9E+02 0.0064 24.7 13.1 67 157-225 221-293 (352)
135 cd01971 Nitrogenase_VnfN_like 38.5 3.2E+02 0.007 25.2 10.8 113 64-197 66-192 (427)
136 PRK12323 DNA polymerase III su 38.4 1.5E+02 0.0034 29.4 7.8 68 104-190 106-175 (700)
137 TIGR01502 B_methylAsp_ase meth 38.0 1.3E+02 0.0028 27.9 7.0 70 156-227 279-357 (408)
138 TIGR03569 NeuB_NnaB N-acetylne 37.8 3E+02 0.0065 24.7 10.7 117 40-182 73-206 (329)
139 PF01408 GFO_IDH_MocA: Oxidore 37.7 1.5E+02 0.0033 21.3 8.5 85 160-255 15-115 (120)
140 PRK08195 4-hyroxy-2-oxovalerat 37.5 2.8E+02 0.0062 24.8 9.0 103 98-224 18-134 (337)
141 TIGR02660 nifV_homocitr homoci 37.4 3.1E+02 0.0068 24.7 11.4 92 108-223 25-131 (365)
142 COG0820 Predicted Fe-S-cluster 37.4 2.5E+02 0.0054 25.5 8.5 98 125-229 215-330 (349)
143 PLN02444 HMP-P synthase 37.1 3.5E+02 0.0076 26.3 9.6 133 40-222 234-378 (642)
144 COG1168 MalY Bifunctional PLP- 37.1 81 0.0018 28.8 5.4 77 40-133 38-117 (388)
145 KOG4175 Tryptophan synthase al 36.7 2.5E+02 0.0055 23.5 8.5 85 25-119 93-202 (268)
146 cd01980 Chlide_reductase_Y Chl 36.7 3.4E+02 0.0074 25.0 13.8 163 63-257 69-256 (416)
147 PF06506 PrpR_N: Propionate ca 36.7 53 0.0012 26.3 3.9 65 154-223 63-130 (176)
148 PLN02363 phosphoribosylanthran 36.5 1.7E+02 0.0038 25.1 7.2 64 117-201 65-130 (256)
149 cd07943 DRE_TIM_HOA 4-hydroxy- 36.5 64 0.0014 27.7 4.6 87 25-124 125-215 (263)
150 COG0042 tRNA-dihydrouridine sy 36.4 3.1E+02 0.0068 24.4 12.2 131 40-193 76-223 (323)
151 TIGR03597 GTPase_YqeH ribosome 36.4 3.2E+02 0.007 24.6 11.7 123 40-188 48-176 (360)
152 cd08568 GDPD_TmGDE_like Glycer 36.3 2.5E+02 0.0053 23.2 8.4 67 161-227 109-203 (226)
153 PRK06552 keto-hydroxyglutarate 36.2 99 0.0021 25.8 5.5 60 157-223 51-114 (213)
154 PRK14459 ribosomal RNA large s 36.1 3E+02 0.0065 25.2 9.0 77 153-229 263-359 (373)
155 PRK03031 rnpA ribonuclease P; 36.0 1.9E+02 0.004 21.7 7.1 65 87-167 47-114 (122)
156 PRK06683 hypothetical protein; 35.9 80 0.0017 22.0 4.2 58 161-225 3-60 (82)
157 cd00248 Mth938-like Mth938-lik 35.8 1.6E+02 0.0034 21.6 6.0 53 175-227 36-88 (109)
158 PRK02901 O-succinylbenzoate sy 35.3 3E+02 0.0065 24.6 8.8 70 158-229 173-243 (327)
159 COG2987 HutU Urocanate hydrata 35.1 94 0.002 29.1 5.5 101 68-202 149-268 (561)
160 TIGR02080 O_succ_thio_ly O-suc 35.1 3.5E+02 0.0075 24.6 10.5 74 155-229 101-177 (382)
161 PF00155 Aminotran_1_2: Aminot 34.9 3.1E+02 0.0068 24.0 11.0 52 177-228 129-191 (363)
162 PRK10558 alpha-dehydro-beta-de 34.9 1.5E+02 0.0033 25.4 6.6 69 160-229 9-80 (256)
163 PRK04175 rpl7ae 50S ribosomal 34.8 1.4E+02 0.003 22.5 5.6 64 155-224 16-79 (122)
164 cd05560 Xcc1710_like Xcc1710_l 34.8 1.5E+02 0.0033 21.8 5.8 52 175-227 37-88 (109)
165 PF01118 Semialdhyde_dh: Semia 34.7 61 0.0013 24.0 3.7 28 40-67 74-101 (121)
166 cd03329 MR_like_4 Mandelate ra 34.6 3.4E+02 0.0075 24.4 15.1 147 41-225 143-299 (368)
167 PRK14477 bifunctional nitrogen 34.6 5.4E+02 0.012 26.6 13.1 115 65-196 552-676 (917)
168 PRK00730 rnpA ribonuclease P; 34.5 2.2E+02 0.0047 22.1 7.2 45 87-132 46-92 (138)
169 PF02817 E3_binding: e3 bindin 34.2 56 0.0012 19.3 2.7 22 240-261 4-25 (39)
170 PRK14456 ribosomal RNA large s 33.8 3.5E+02 0.0075 24.7 9.0 77 153-229 260-353 (368)
171 cd00405 PRAI Phosphoribosylant 33.8 1E+02 0.0022 25.1 5.3 41 122-183 73-113 (203)
172 PF05049 IIGP: Interferon-indu 33.5 87 0.0019 28.6 5.1 59 68-133 129-201 (376)
173 COG0821 gcpE 1-hydroxy-2-methy 33.4 3.6E+02 0.0079 24.3 13.0 93 105-223 36-128 (361)
174 TIGR00612 ispG_gcpE 1-hydroxy- 33.4 3.6E+02 0.0079 24.3 12.5 69 155-223 58-126 (346)
175 TIGR02026 BchE magnesium-proto 33.3 4.2E+02 0.0092 25.0 12.4 163 40-219 222-392 (497)
176 TIGR01496 DHPS dihydropteroate 33.2 3.1E+02 0.0068 23.5 12.2 62 157-225 63-125 (257)
177 PF07026 DUF1317: Protein of u 33.0 45 0.00098 21.7 2.3 36 218-254 11-47 (60)
178 TIGR00262 trpA tryptophan synt 33.0 3.1E+02 0.0068 23.4 9.1 75 152-228 69-151 (256)
179 PRK05628 coproporphyrinogen II 33.0 3.7E+02 0.008 24.2 9.7 123 47-180 109-248 (375)
180 TIGR03586 PseI pseudaminic aci 32.9 3.6E+02 0.0078 24.1 10.1 115 40-182 74-205 (327)
181 PRK07003 DNA polymerase III su 32.7 2.1E+02 0.0047 29.0 7.9 92 104-220 101-197 (830)
182 KOG2264 Exostosin EXT1L [Signa 32.6 1.4E+02 0.0031 28.9 6.3 64 68-144 634-698 (907)
183 PRK14478 nitrogenase molybdenu 32.5 4.3E+02 0.0094 24.9 13.3 160 64-252 99-287 (475)
184 PF06080 DUF938: Protein of un 32.2 78 0.0017 26.3 4.2 65 196-260 109-191 (204)
185 PF01081 Aldolase: KDPG and KH 32.1 1.2E+02 0.0026 25.0 5.3 59 155-223 47-106 (196)
186 KOG1549 Cysteine desulfurase N 31.7 2.3E+02 0.005 26.4 7.5 25 42-67 56-80 (428)
187 TIGR00035 asp_race aspartate r 31.7 2.4E+02 0.0052 23.5 7.3 82 105-192 17-99 (229)
188 TIGR00048 radical SAM enzyme, 31.6 3.4E+02 0.0073 24.5 8.6 76 154-229 241-333 (355)
189 PRK09284 thiamine biosynthesis 31.5 4.8E+02 0.01 25.3 9.6 139 40-223 229-374 (607)
190 cd03770 SR_TndX_transposase Se 31.4 1E+02 0.0022 23.5 4.6 52 108-175 54-105 (140)
191 PF00148 Oxidored_nitro: Nitro 30.9 3.8E+02 0.0081 24.2 9.0 160 66-254 56-244 (398)
192 TIGR01304 IMP_DH_rel_2 IMP deh 30.9 3.3E+02 0.0071 24.9 8.3 69 155-223 119-193 (369)
193 COG2256 MGS1 ATPase related to 30.8 4.4E+02 0.0096 24.5 9.0 98 47-180 37-143 (436)
194 cd08557 PI-PLCc_bacteria_like 30.7 1.9E+02 0.004 24.5 6.6 19 48-66 42-60 (271)
195 PRK02399 hypothetical protein; 30.6 1.4E+02 0.0031 27.5 5.9 59 106-190 199-271 (406)
196 COG0673 MviM Predicted dehydro 30.5 3E+02 0.0064 24.0 8.1 85 161-254 20-119 (342)
197 PRK04390 rnpA ribonuclease P; 30.4 2.3E+02 0.005 21.1 7.1 47 87-133 44-92 (120)
198 PF11181 YflT: Heat induced st 30.3 90 0.002 22.6 3.9 29 66-96 6-34 (103)
199 PRK02301 putative deoxyhypusin 30.0 4E+02 0.0088 23.8 9.3 52 42-97 42-94 (316)
200 cd00740 MeTr MeTr subgroup of 29.8 3.6E+02 0.0077 23.1 11.4 105 102-227 23-128 (252)
201 cd00668 Ile_Leu_Val_MetRS_core 29.8 76 0.0016 27.9 4.1 48 105-172 82-131 (312)
202 smart00148 PLCXc Phospholipase 29.7 1.7E+02 0.0037 22.3 5.5 18 46-63 31-48 (135)
203 TIGR02090 LEU1_arch isopropylm 29.6 4.3E+02 0.0092 23.9 9.3 92 108-223 24-130 (363)
204 PRK08247 cystathionine gamma-s 29.4 3.8E+02 0.0082 24.0 8.6 58 170-228 116-176 (366)
205 PRK01222 N-(5'-phosphoribosyl) 29.2 2.3E+02 0.005 23.4 6.6 32 168-201 53-85 (210)
206 PRK13803 bifunctional phosphor 29.2 5.5E+02 0.012 25.1 10.1 67 116-202 20-88 (610)
207 cd01967 Nitrogenase_MoFe_alpha 29.2 4.4E+02 0.0095 23.9 13.7 162 65-254 68-258 (406)
208 PF08671 SinI: Anti-repressor 28.9 65 0.0014 18.0 2.2 16 43-58 3-18 (30)
209 cd08319 Death_RAIDD Death doma 28.7 77 0.0017 22.2 3.1 71 106-199 11-81 (83)
210 cd07940 DRE_TIM_IPMS 2-isoprop 28.7 3.7E+02 0.0081 22.9 8.9 40 40-79 140-181 (268)
211 PRK07114 keto-hydroxyglutarate 28.5 1.1E+02 0.0025 25.7 4.7 62 155-223 54-117 (222)
212 PHA02820 phospholipase-D-like 28.4 4.9E+02 0.011 24.2 9.9 45 87-132 230-282 (424)
213 PRK10415 tRNA-dihydrouridine s 28.2 4.2E+02 0.0092 23.4 12.4 129 40-193 74-219 (321)
214 COG1618 Predicted nucleotide k 28.1 3.2E+02 0.007 22.1 9.0 86 69-188 87-173 (179)
215 TIGR02637 RhaS rhamnose ABC tr 28.0 2.9E+02 0.0063 23.5 7.5 43 158-200 198-241 (302)
216 PRK09454 ugpQ cytoplasmic glyc 28.0 3.7E+02 0.0079 22.6 15.2 61 167-227 139-218 (249)
217 cd03326 MR_like_1 Mandelate ra 27.9 4.7E+02 0.01 23.9 13.4 146 41-221 160-314 (385)
218 TIGR02764 spore_ybaN_pdaB poly 27.7 3.2E+02 0.0068 21.8 11.1 41 111-169 142-182 (191)
219 PRK14455 ribosomal RNA large s 27.7 3.7E+02 0.0081 24.3 8.2 77 153-229 244-337 (356)
220 TIGR02329 propionate_PrpR prop 27.6 2.7E+02 0.0058 26.8 7.5 68 154-224 83-151 (526)
221 PLN02951 Molybderin biosynthes 27.5 2.1E+02 0.0047 26.0 6.6 140 40-204 90-239 (373)
222 PRK10128 2-keto-3-deoxy-L-rham 27.2 2.7E+02 0.0059 24.1 6.9 67 161-228 9-78 (267)
223 cd08606 GDPD_YPL110cp_fungi Gl 27.2 2.8E+02 0.0062 23.8 7.2 66 161-226 156-253 (286)
224 PF10668 Phage_terminase: Phag 27.1 45 0.00098 21.9 1.6 16 244-259 24-39 (60)
225 COG1448 TyrB Aspartate/tyrosin 27.0 2.4E+02 0.0052 25.9 6.6 88 67-173 105-210 (396)
226 cd08572 GDPD_GDE5_like Glycero 26.7 4.1E+02 0.0089 23.1 8.1 30 162-191 171-200 (293)
227 cd00316 Oxidoreductase_nitroge 26.7 4.7E+02 0.01 23.5 12.9 165 64-259 60-258 (399)
228 PRK09413 IS2 repressor TnpA; R 26.6 1.3E+02 0.0029 22.4 4.4 40 40-79 13-53 (121)
229 cd06376 PBP1_mGluR_groupIII Li 26.6 5.2E+02 0.011 23.9 9.6 47 111-179 219-269 (463)
230 cd02930 DCR_FMN 2,4-dienoyl-Co 26.6 4.7E+02 0.01 23.4 14.0 131 45-193 139-301 (353)
231 PF07287 DUF1446: Protein of u 26.5 1.9E+02 0.0041 26.4 6.0 87 157-255 11-100 (362)
232 PF01784 NIF3: NIF3 (NGG1p int 26.5 45 0.00097 28.3 1.9 37 42-79 198-234 (241)
233 COG1358 RPL8A Ribosomal protei 26.5 2.2E+02 0.0049 21.3 5.5 65 154-224 12-76 (116)
234 PRK07811 cystathionine gamma-s 26.4 4.9E+02 0.011 23.6 9.8 52 177-229 133-187 (388)
235 PRK00499 rnpA ribonuclease P; 26.3 2.7E+02 0.0058 20.5 7.1 64 87-167 38-104 (114)
236 PRK10799 metal-binding protein 26.1 1.3E+02 0.0029 25.5 4.8 34 46-80 197-230 (247)
237 cd03314 MAL Methylaspartate am 26.1 2.2E+02 0.0048 26.0 6.4 69 157-227 244-321 (369)
238 COG4464 CapC Capsular polysacc 26.0 3.4E+02 0.0075 23.0 6.8 27 40-66 17-43 (254)
239 TIGR01060 eno phosphopyruvate 26.0 5.4E+02 0.012 23.9 10.9 68 157-226 291-366 (425)
240 COG1242 Predicted Fe-S oxidore 25.9 4E+02 0.0088 23.5 7.5 63 90-178 181-245 (312)
241 PRK09490 metH B12-dependent me 25.7 4.2E+02 0.0091 28.5 9.0 87 173-260 434-523 (1229)
242 PF01527 HTH_Tnp_1: Transposas 25.6 22 0.00048 23.8 -0.1 40 41-80 8-48 (76)
243 TIGR02660 nifV_homocitr homoci 25.6 1.6E+02 0.0034 26.7 5.4 17 103-119 169-185 (365)
244 PRK11858 aksA trans-homoaconit 25.5 1.6E+02 0.0036 26.8 5.5 27 154-188 233-260 (378)
245 cd02742 GH20_hexosaminidase Be 25.4 88 0.0019 27.5 3.7 16 208-223 75-90 (303)
246 cd01966 Nitrogenase_NifN_1 Nit 25.2 5.5E+02 0.012 23.7 14.5 115 65-196 62-189 (417)
247 PF00875 DNA_photolyase: DNA p 25.1 2E+02 0.0044 22.4 5.4 62 164-226 62-125 (165)
248 TIGR03239 GarL 2-dehydro-3-deo 25.1 2.5E+02 0.0053 24.0 6.2 64 165-229 7-73 (249)
249 cd03466 Nitrogenase_NifN_2 Nit 25.1 5.5E+02 0.012 23.7 10.6 113 65-194 65-184 (429)
250 COG0761 lytB 4-Hydroxy-3-methy 25.1 2.3E+02 0.0049 25.0 5.9 44 205-260 201-244 (294)
251 PRK00507 deoxyribose-phosphate 25.0 3.3E+02 0.0072 22.8 6.9 73 40-122 133-209 (221)
252 cd00959 DeoC 2-deoxyribose-5-p 24.9 3.4E+02 0.0074 22.1 6.9 72 41-121 129-203 (203)
253 PF03851 UvdE: UV-endonuclease 24.7 2.6E+02 0.0055 24.4 6.3 135 42-200 44-212 (275)
254 cd08556 GDPD Glycerophosphodie 24.7 3.4E+02 0.0073 21.1 13.4 24 41-64 11-34 (189)
255 PRK07714 hypothetical protein; 24.7 2.7E+02 0.0058 20.0 6.6 64 154-224 3-66 (100)
256 PF00388 PI-PLC-X: Phosphatidy 24.6 59 0.0013 25.0 2.2 18 47-64 30-47 (146)
257 COG3737 Uncharacterized conser 24.6 1.5E+02 0.0032 22.4 4.1 51 179-229 56-107 (127)
258 PRK10188 DNA-binding transcrip 24.5 3.7E+02 0.0081 22.6 7.2 98 102-233 21-133 (240)
259 PRK11194 ribosomal RNA large s 24.5 5.4E+02 0.012 23.5 8.6 75 154-228 242-336 (372)
260 PF01476 LysM: LysM domain; I 24.4 49 0.0011 19.3 1.3 18 243-260 7-24 (44)
261 PRK06582 coproporphyrinogen II 24.4 4.9E+02 0.011 23.8 8.4 74 98-180 170-250 (390)
262 PRK13015 3-dehydroquinate dehy 24.3 3E+02 0.0066 21.6 5.9 80 102-207 26-107 (146)
263 PRK13361 molybdenum cofactor b 24.3 5E+02 0.011 22.9 14.4 130 40-190 45-179 (329)
264 COG3607 Predicted lactoylgluta 24.2 93 0.002 23.8 3.0 32 31-66 75-106 (133)
265 PRK00366 ispG 4-hydroxy-3-meth 24.1 5.5E+02 0.012 23.4 12.8 94 105-223 39-135 (360)
266 COG1801 Uncharacterized conser 24.1 4.7E+02 0.01 22.6 11.0 97 29-134 3-115 (263)
267 cd01968 Nitrogenase_NifE_I Nit 24.0 5.6E+02 0.012 23.4 13.8 166 61-255 63-257 (410)
268 TIGR01163 rpe ribulose-phospha 23.9 3.8E+02 0.0083 21.5 9.5 21 105-126 11-31 (210)
269 COG4943 Predicted signal trans 23.7 3.6E+02 0.0077 25.7 7.2 146 87-252 350-517 (524)
270 PRK08599 coproporphyrinogen II 23.7 5.4E+02 0.012 23.1 9.6 126 46-180 100-240 (377)
271 PF01113 DapB_N: Dihydrodipico 23.6 2.2E+02 0.0048 21.1 5.1 44 154-197 77-120 (124)
272 cd08605 GDPD_GDE5_like_1_plant 23.6 3.3E+02 0.0072 23.4 6.9 63 164-226 164-258 (282)
273 PRK08649 inosine 5-monophospha 23.6 5E+02 0.011 23.7 8.2 70 154-223 117-192 (368)
274 PTZ00106 60S ribosomal protein 23.5 2.6E+02 0.0056 20.6 5.3 63 155-224 11-73 (108)
275 PRK04820 rnpA ribonuclease P; 23.5 3.6E+02 0.0078 21.0 7.4 65 87-167 48-114 (145)
276 PLN02494 adenosylhomocysteinas 23.5 1.8E+02 0.0038 27.6 5.3 55 172-228 48-105 (477)
277 cd00945 Aldolase_Class_I Class 23.5 3.7E+02 0.0079 21.1 7.3 77 42-123 64-146 (201)
278 KOG2367 Alpha-isopropylmalate 23.4 2.9E+02 0.0062 26.3 6.5 86 40-131 201-288 (560)
279 PF13443 HTH_26: Cro/C1-type H 23.4 16 0.00035 23.5 -1.1 46 211-261 14-59 (63)
280 COG4359 Uncharacterized conser 23.3 1.3E+02 0.0029 24.7 3.9 35 180-225 62-96 (220)
281 PF05221 AdoHcyase: S-adenosyl 23.3 2.1E+02 0.0046 24.8 5.4 54 172-227 45-101 (268)
282 PRK14468 ribosomal RNA large s 23.2 5.5E+02 0.012 23.1 8.8 77 153-229 228-321 (343)
283 COG2949 SanA Uncharacterized m 23.2 4.5E+02 0.0099 22.1 8.0 74 154-227 78-182 (235)
284 TIGR00314 cdhA CO dehydrogenas 23.0 3.3E+02 0.0072 27.6 7.3 74 154-233 246-336 (784)
285 PRK15440 L-rhamnonate dehydrat 23.0 2.2E+02 0.0047 26.2 5.8 66 157-224 247-318 (394)
286 TIGR02082 metH 5-methyltetrahy 22.9 9.6E+02 0.021 25.7 11.5 87 173-260 418-507 (1178)
287 PRK14463 ribosomal RNA large s 22.8 5.7E+02 0.012 23.0 8.4 77 153-229 232-325 (349)
288 cd00338 Ser_Recombinase Serine 22.6 1.9E+02 0.0042 21.3 4.7 52 108-176 51-102 (137)
289 cd01972 Nitrogenase_VnfE_like 22.6 6.1E+02 0.013 23.3 10.4 163 64-254 69-265 (426)
290 PF07476 MAAL_C: Methylasparta 22.6 2.4E+02 0.0053 23.9 5.4 100 102-223 86-194 (248)
291 TIGR01329 cysta_beta_ly_E cyst 22.4 5.8E+02 0.013 23.0 9.2 59 170-229 111-172 (378)
292 TIGR00355 purH phosphoribosyla 22.4 2.1E+02 0.0046 27.3 5.6 73 41-129 9-98 (511)
293 COG2102 Predicted ATPases of P 22.4 1.9E+02 0.0042 24.4 4.8 93 154-258 75-178 (223)
294 COG1751 Uncharacterized conser 22.4 4.1E+02 0.0088 21.2 8.7 76 154-229 12-94 (186)
295 COG0825 AccA Acetyl-CoA carbox 22.2 1E+02 0.0022 27.2 3.2 35 44-78 138-179 (317)
296 PRK02714 O-succinylbenzoate sy 22.1 5.5E+02 0.012 22.6 8.4 71 157-229 205-276 (320)
297 PRK14465 ribosomal RNA large s 22.0 3.5E+02 0.0076 24.4 6.8 99 125-229 215-329 (342)
298 COG1031 Uncharacterized Fe-S o 21.9 6E+02 0.013 24.2 8.2 105 40-181 215-324 (560)
299 PRK01492 rnpA ribonuclease P; 21.9 3.4E+02 0.0075 20.2 7.2 46 88-133 47-98 (118)
300 cd04734 OYE_like_3_FMN Old yel 21.9 5.8E+02 0.013 22.8 12.6 38 158-195 274-312 (343)
301 TIGR01921 DAP-DH diaminopimela 21.9 3.1E+02 0.0066 24.6 6.3 71 45-122 73-143 (324)
302 TIGR01761 thiaz-red thiazoliny 21.9 5.9E+02 0.013 22.9 8.8 81 164-254 21-116 (343)
303 cd03313 enolase Enolase: Enola 21.9 6.3E+02 0.014 23.3 13.7 64 158-223 291-361 (408)
304 COG1832 Predicted CoA-binding 21.8 3.2E+02 0.007 21.2 5.6 48 178-226 4-51 (140)
305 PRK14851 hypothetical protein; 21.8 5.4E+02 0.012 25.7 8.6 116 107-232 54-174 (679)
306 cd08607 GDPD_GDE5 Glycerophosp 21.7 4.9E+02 0.011 22.4 7.6 21 41-61 19-39 (290)
307 COG1831 Predicted metal-depend 21.7 4.3E+02 0.0093 23.1 6.9 65 154-219 106-185 (285)
308 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.7 5.2E+02 0.011 22.2 13.8 25 40-64 18-42 (275)
309 PF04760 IF2_N: Translation in 21.7 19 0.00041 22.7 -1.0 18 244-261 5-22 (54)
310 COG0677 WecC UDP-N-acetyl-D-ma 21.7 6E+02 0.013 23.7 8.1 163 87-253 119-298 (436)
311 PRK00039 ruvC Holliday junctio 21.6 2.6E+02 0.0057 22.2 5.4 46 209-254 88-133 (164)
312 TIGR02766 crypt_chrom_pln cryp 21.6 4E+02 0.0087 25.0 7.5 71 155-225 50-123 (475)
313 PLN02321 2-isopropylmalate syn 21.5 6.2E+02 0.013 25.0 8.8 91 31-129 227-322 (632)
314 cd08612 GDPD_GDE4 Glycerophosp 21.3 5.5E+02 0.012 22.3 8.1 24 40-63 38-61 (300)
315 PF09370 TIM-br_sig_trns: TIM- 21.3 1.4E+02 0.0029 26.0 3.8 58 154-224 94-156 (268)
316 cd02901 Macro_Poa1p_like Macro 21.2 76 0.0016 24.1 2.1 27 26-54 112-138 (140)
317 cd00466 DHQase_II Dehydroquina 21.1 3.1E+02 0.0068 21.3 5.4 80 102-207 24-105 (140)
318 TIGR00099 Cof-subfamily Cof su 21.1 4.9E+02 0.011 21.7 8.7 71 155-226 19-104 (256)
319 PF03618 Kinase-PPPase: Kinase 20.8 2.7E+02 0.0058 24.0 5.5 15 209-223 68-82 (255)
320 smart00857 Resolvase Resolvase 20.8 3.1E+02 0.0067 20.6 5.6 51 108-175 51-101 (148)
321 TIGR00036 dapB dihydrodipicoli 20.7 4.2E+02 0.0091 22.7 6.9 38 154-191 78-115 (266)
322 CHL00200 trpA tryptophan synth 20.7 5.5E+02 0.012 22.1 10.5 74 152-227 74-153 (263)
323 TIGR03822 AblA_like_2 lysine-2 20.7 5.9E+02 0.013 22.5 13.9 125 40-189 119-253 (321)
324 PRK00077 eno enolase; Provisio 20.6 6.8E+02 0.015 23.2 14.4 97 103-227 262-366 (425)
325 cd00814 MetRS_core catalytic c 20.5 1.6E+02 0.0035 25.9 4.4 47 104-170 68-114 (319)
326 PF09989 DUF2229: CoA enzyme a 20.4 5.1E+02 0.011 21.6 11.2 42 183-224 175-218 (221)
327 PF00697 PRAI: N-(5'phosphorib 20.4 4.7E+02 0.01 21.2 7.4 52 159-215 38-90 (197)
328 PRK01313 rnpA ribonuclease P; 20.4 4E+02 0.0086 20.3 7.2 46 87-133 47-96 (129)
329 COG3033 TnaA Tryptophanase [Am 20.3 2.3E+02 0.0051 26.0 5.2 51 177-227 168-228 (471)
330 PRK07764 DNA polymerase III su 20.3 5.4E+02 0.012 26.3 8.4 93 104-221 102-199 (824)
331 PLN03228 methylthioalkylmalate 20.3 7.2E+02 0.016 23.8 8.8 96 108-226 108-230 (503)
332 PF01964 ThiC: ThiC family; I 20.2 55 0.0012 30.1 1.3 78 40-131 73-161 (420)
333 cd06361 PBP1_GPC6A_like Ligand 20.2 6.6E+02 0.014 22.8 12.4 110 40-179 155-270 (403)
334 PF12689 Acid_PPase: Acid Phos 20.2 2.7E+02 0.0059 22.3 5.2 40 154-193 47-86 (169)
335 TIGR02159 PA_CoA_Oxy4 phenylac 20.1 3.4E+02 0.0074 21.1 5.6 41 182-222 47-91 (146)
336 cd06362 PBP1_mGluR Ligand bind 20.1 6.8E+02 0.015 22.9 9.8 25 155-179 241-268 (452)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.8e-58 Score=394.65 Aligned_cols=233 Identities=49% Similarity=0.770 Sum_probs=211.8
Q ss_pred eEEcCCCCCccccCeeceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEee
Q 024751 16 EVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITT 95 (263)
Q Consensus 16 ~~~l~~g~~g~~v~~iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~t 95 (263)
+++||+| .+||.||||||+ .+++++.++++.|++.||||||||..||+|+.+|++|++.++++.+ +|+++||+|
T Consensus 6 ~~~Ln~G---~~mP~iGlGTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v-~RediFiTS 79 (300)
T KOG1577|consen 6 TVKLNNG---FKMPIIGLGTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGV-KREDIFITS 79 (300)
T ss_pred eEeccCC---CccceeeeEecc--cChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCc-chhhheeee
Confidence 7899998 999999999999 6789999999999999999999999999999999999999987766 999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCc--c-ccccCCHHHHHHHHHHHHHcCCccE
Q 024751 96 KLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPE--E-DLVSLDYNGVWEAMEECQRHGLTKS 172 (263)
Q Consensus 96 K~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~l~~~G~ir~ 172 (263)
|+|...+.++.++.++++||++||+||+|+|++|||...++ ..|.+. + .....+..++|++|++++++|++|+
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~----~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rs 155 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD----SFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRS 155 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCC----CCCcccccccccccchHHHHHHHHHHHHHcCCceE
Confidence 99999889999999999999999999999999999987643 122211 1 1223568999999999999999999
Q ss_pred EEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHh
Q 024751 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQ 252 (263)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~ 252 (263)
||||||+..+|++++..++++|+++|+++||+.++.++++||+++||.+.||||||+++. +. .++.+|.+.+||+||
T Consensus 156 IGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~~-~ll~~~~l~~iA~K~ 232 (300)
T KOG1577|consen 156 IGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--GS-DLLEDPVLKEIAKKY 232 (300)
T ss_pred eeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--cc-ccccCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998544 22 789999999999999
Q ss_pred CCCchhhcc
Q 024751 253 QGETERELG 261 (263)
Q Consensus 253 ~~t~~~~~~ 261 (263)
++||+||+=
T Consensus 233 ~kt~aQIlL 241 (300)
T KOG1577|consen 233 NKTPAQILL 241 (300)
T ss_pred CCCHHHHHH
Confidence 999999973
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.9e-57 Score=388.16 Aligned_cols=217 Identities=41% Similarity=0.709 Sum_probs=198.3
Q ss_pred cCeEEcCCCCCccccCeeceeccccCCChHH-HHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEE
Q 024751 14 VPEVKLSSASGHRKMPVIGLGSAVDNIDESA-MKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELF 92 (263)
Q Consensus 14 ~~~~~l~~g~~g~~v~~iglG~~~~~~~~~~-~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~ 92 (263)
..+.+|++| .+||.||||||.++ .++ +.+.+.+|++.|||+||||..||||+.+|++|++. |+ +|+++|
T Consensus 3 ~~~~~l~~g---~~iP~iGlGt~~~~--~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~v--~ReelF 72 (280)
T COG0656 3 KTKVTLNNG---VEIPAIGLGTWQIG--DDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---GV--PREELF 72 (280)
T ss_pred CceeecCCC---CcccCcceEeeecC--CchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---CC--CHHHeE
Confidence 356788988 88999999999964 333 89999999999999999999999999999999985 77 899999
Q ss_pred EeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccE
Q 024751 93 ITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS 172 (263)
Q Consensus 93 I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 172 (263)
|+||+|....+++.+.+++++||++||+||+|||++|||.+. .. ....++|++|++++++|+||+
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~--------------~~~~etw~alE~l~~~G~ir~ 137 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-KY--------------VVIEETWKALEELVDEGLIRA 137 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-cC--------------ccHHHHHHHHHHHHhcCCccE
Confidence 999999999999999999999999999999999999999543 10 016799999999999999999
Q ss_pred EEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHh
Q 024751 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQ 252 (263)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~ 252 (263)
||||||+.+.++++++..++.|++||++|||+.++.++++||+++||.+++||||+. |. .++++|.+.+||++|
T Consensus 138 IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~-----~l~~~~~l~~Ia~k~ 211 (280)
T COG0656 138 IGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG-----KLLDNPVLAEIAKKY 211 (280)
T ss_pred EEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc-----ccccChHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999995 32 178999999999999
Q ss_pred CCCchhhcc
Q 024751 253 QGETERELG 261 (263)
Q Consensus 253 ~~t~~~~~~ 261 (263)
|+||+||+=
T Consensus 212 g~t~AQv~L 220 (280)
T COG0656 212 GKTPAQVAL 220 (280)
T ss_pred CCCHHHHHH
Confidence 999999863
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2e-47 Score=332.39 Aligned_cols=227 Identities=28% Similarity=0.408 Sum_probs=196.0
Q ss_pred CccCCCcCeEEcCCCCCccccCeeceeccccC-----CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHH
Q 024751 8 MNVSINVPEVKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEA 79 (263)
Q Consensus 8 ~~~~~~~~~~~l~~g~~g~~v~~iglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~ 79 (263)
++....++++.|+ ++|++||++|||||.+. .+.+++.+++++|+++|+||||||+.|| ||..+|++|+++
T Consensus 6 ~~~~~~~~~~~lg--~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~ 83 (336)
T KOG1575|consen 6 PSTELGMLRRKLG--NSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR 83 (336)
T ss_pred ccchhcceeeecc--CCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc
Confidence 3444445666666 45799999999996442 5899999999999999999999999999 899999999987
Q ss_pred HhcCCCCCCccEEEeeCCCC-------CCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccC
Q 024751 80 LKLGLVASREELFITTKLWC-------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSL 152 (263)
Q Consensus 80 ~~~~~~~~R~~~~I~tK~~~-------~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~ 152 (263)
+. .|++++|+||++. ...+...+.+.++.|+++|+++|||+|++||+|+..+
T Consensus 84 ---~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p---------------- 142 (336)
T KOG1575|consen 84 ---GW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP---------------- 142 (336)
T ss_pred ---CC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC----------------
Confidence 54 7999999999842 3456688899999999999999999999999966544
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCCC
Q 024751 153 DYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 153 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~~ 229 (263)
.++++++|.+++++|+||+||+|+++.+++.++...++++++.+|++||++.+. .+++++|++.||++++||||++
T Consensus 143 -iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~ 221 (336)
T KOG1575|consen 143 -IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR 221 (336)
T ss_pred -HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc
Confidence 789999999999999999999999999999999999988999999999999875 4699999999999999999997
Q ss_pred CCCCCCCCCC-------------C----C----------cHHHHHHHHHhCCCchhh
Q 024751 230 VGSSWGTNQV-------------M----N----------NEALKQIAALQQGETERE 259 (263)
Q Consensus 230 ~G~l~~~~~~-------------l----~----------~~~l~~ia~~~~~t~~~~ 259 (263)
|+|++.... + + -..+.+||++||+|++|+
T Consensus 222 -G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~ql 277 (336)
T KOG1575|consen 222 -GLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQL 277 (336)
T ss_pred -ceeccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 999864221 0 0 134889999999999986
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.6e-47 Score=329.51 Aligned_cols=205 Identities=37% Similarity=0.662 Sum_probs=183.7
Q ss_pred ccCeeceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhH
Q 024751 27 KMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDL 106 (263)
Q Consensus 27 ~v~~iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~ 106 (263)
+||+||||||++ +.+++.++++.|++.|||+||||+.||+|+.+|++|+.. ++ +|+++||+||++....+++.
T Consensus 2 ~vs~lglGt~~~--~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~v~i~TK~~~~~~~~~~ 74 (267)
T PRK11172 2 SIPAFGLGTFRL--KDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---GV--PRDELFITTKIWIDNLAKDK 74 (267)
T ss_pred CCCCEeeEcccc--ChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---CC--ChhHeEEEEEeCCCCCCHHH
Confidence 689999999985 467899999999999999999999999999999999864 54 69999999999877778899
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 024751 107 VVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETI 186 (263)
Q Consensus 107 i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~ 186 (263)
+++++++||++||+||+|+|++|||++.. .....+.|++|++|+++||||+||||||+.++++++
T Consensus 75 ~~~~~~~SL~rL~~d~iDl~~lH~~~~~~---------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 139 (267)
T PRK11172 75 LIPSLKESLQKLRTDYVDLTLIHWPSPND---------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQA 139 (267)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCCC---------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHH
Confidence 99999999999999999999999995421 012678999999999999999999999999999999
Q ss_pred HHhCCC-CCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhc
Q 024751 187 LAFATI-PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 187 ~~~~~~-~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
++.... .|.++|++||++.++.+++++|+++||++++|+||+. |.+ +.++.+.++|++|++|++|++
T Consensus 140 ~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~------~~~~~l~~~a~~~~~s~aqva 207 (267)
T PRK11172 140 IAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKV------LKDPVIARIAAKHNATPAQVI 207 (267)
T ss_pred HHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Ccc------cCCHHHHHHHHHhCCCHHHHH
Confidence 887654 6889999999999888999999999999999999996 643 446889999999999999974
No 5
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.5e-47 Score=335.72 Aligned_cols=220 Identities=31% Similarity=0.445 Sum_probs=189.0
Q ss_pred cCeEEcCCCCCccccCeeceeccccCC-----ChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCC
Q 024751 14 VPEVKLSSASGHRKMPVIGLGSAVDNI-----DESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLV 85 (263)
Q Consensus 14 ~~~~~l~~g~~g~~v~~iglG~~~~~~-----~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~ 85 (263)
|++++|++ ||++||+||||||.++. +.+++.+++++|+++||||||||+.|| ||+.+|++|+.. +
T Consensus 1 m~~r~lG~--~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~-- 73 (316)
T COG0667 1 MKYRRLGR--SGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G-- 73 (316)
T ss_pred CCceecCC--CCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--
Confidence 45677774 57999999999999982 234667799999999999999999999 899999999976 2
Q ss_pred CCCccEEEeeCCCC----------CCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHH
Q 024751 86 ASREELFITTKLWC----------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (263)
Q Consensus 86 ~~R~~~~I~tK~~~----------~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
.|++++|+||++. .+.+++.++++++.||+|||+||||+|++|||+.. +| ..
T Consensus 74 -~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-------~p----------~~ 135 (316)
T COG0667 74 -RRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-------TP----------IE 135 (316)
T ss_pred -CCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-------CC----------HH
Confidence 2899999999942 24589999999999999999999999999999653 33 78
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCCCCCCC
Q 024751 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSS 233 (263)
Q Consensus 156 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~~~G~l 233 (263)
+.+++|.+|+++|+||+||+||++.+++.++++.+ .++.++|.+||++.++ .+++++|+++||++++||||++ |+|
T Consensus 136 e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~L 213 (316)
T COG0667 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLL 213 (316)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-ccc
Confidence 88999999999999999999999999999999987 6778999999999964 4599999999999999999996 999
Q ss_pred CCCCCC----C------C------------cHHHHHHHHHhCCCchhhc
Q 024751 234 WGTNQV----M------N------------NEALKQIAALQQGETEREL 260 (263)
Q Consensus 234 ~~~~~~----l------~------------~~~l~~ia~~~~~t~~~~~ 260 (263)
++.... . . -..++++|+++|+||+|+.
T Consensus 214 tgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~A 262 (316)
T COG0667 214 TGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVA 262 (316)
T ss_pred CCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 875322 0 0 1348999999999999873
No 6
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.2e-46 Score=324.75 Aligned_cols=213 Identities=37% Similarity=0.670 Sum_probs=189.3
Q ss_pred CeEEcCCCCCccccCeeceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEe
Q 024751 15 PEVKLSSASGHRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFIT 94 (263)
Q Consensus 15 ~~~~l~~g~~g~~v~~iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~ 94 (263)
.+++|++| +.||+||||||++ +.+++.++++.|++.|||+||||+.||+|+.+|++|++. ++ +|++++|+
T Consensus 5 ~~~~l~~g---~~v~~lglG~~~~--~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~~--~R~~~~i~ 74 (275)
T PRK11565 5 TVIKLQDG---NVMPQLGLGVWQA--SNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---SV--AREELFIT 74 (275)
T ss_pred ceEEcCCC---CccCCcceECccC--CHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---CC--CHHHEEEE
Confidence 34668776 9999999999984 578899999999999999999999999999999999975 54 69999999
Q ss_pred eCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEE
Q 024751 95 TKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIG 174 (263)
Q Consensus 95 tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 174 (263)
||++.. +++.+++++++||++||+||+|+|++|||+.... ...++|++|++|+++|+||+||
T Consensus 75 tK~~~~--~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~----------------~~~~~~~~l~~l~~~G~ir~iG 136 (275)
T PRK11565 75 TKLWND--DHKRPREALEESLKKLQLDYVDLYLMHWPVPAID----------------HYVEAWKGMIELQKEGLIKSIG 136 (275)
T ss_pred EEecCc--chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcC----------------cHHHHHHHHHHHHHcCCeeEEe
Confidence 999753 4689999999999999999999999999954211 1578999999999999999999
Q ss_pred ecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 175 VSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
||||+.+++++++....+.|.++|++|+++.++.+++++|+++||++++|+||++ |. ...+.++.+.++|++||+
T Consensus 137 vSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~----~~~~~~~~l~~ia~~~g~ 211 (275)
T PRK11565 137 VCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG----KGVFDQKVIRDLADKYGK 211 (275)
T ss_pred eccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC----cccccCHHHHHHHHHhCC
Confidence 9999999999999888888999999999999888999999999999999999985 42 123557899999999999
Q ss_pred Cchhhc
Q 024751 255 ETEREL 260 (263)
Q Consensus 255 t~~~~~ 260 (263)
|++|++
T Consensus 212 s~aq~a 217 (275)
T PRK11565 212 TPAQIV 217 (275)
T ss_pred CHHHHH
Confidence 999985
No 7
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.3e-45 Score=327.18 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=183.5
Q ss_pred CCCccccCeeceeccc-cC--CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCccEEEee
Q 024751 22 ASGHRKMPVIGLGSAV-DN--IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITT 95 (263)
Q Consensus 22 g~~g~~v~~iglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R~~~~I~t 95 (263)
|+||++||+||||||. ++ .+.+++.++++.|++.|||+||||+.|| ||+.+|++|++. +. +|++++|+|
T Consensus 5 g~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~~--~R~~~~iaT 79 (317)
T TIGR01293 5 GKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---GW--RRSSYVITT 79 (317)
T ss_pred CCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---CC--CcccEEEEe
Confidence 3578999999999996 33 5788899999999999999999999998 899999999864 43 699999999
Q ss_pred CCCC-------CCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC
Q 024751 96 KLWC-------SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG 168 (263)
Q Consensus 96 K~~~-------~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 168 (263)
|++. ...+++.+++++++||++||+||||+|++|||+... | ..++|++|++|+++|
T Consensus 80 K~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~-------~----------~~e~~~aL~~l~~~G 142 (317)
T TIGR01293 80 KIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNT-------P----------MEETVRAMTYVINQG 142 (317)
T ss_pred eeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCC-------C----------HHHHHHHHHHHHHcC
Confidence 9842 135789999999999999999999999999995422 1 678999999999999
Q ss_pred CccEEEecCCCHHHHHHHHHhCC----CCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCCCCCCCCCCCCC--
Q 024751 169 LTKSIGVSNFSPKKIETILAFAT----IPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV-- 239 (263)
Q Consensus 169 ~ir~iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~-- 239 (263)
+||+||||||+.+++.++...+. ++|+++|.+||++.++ .+++++|+++||++++|+||++ |+|++...-
T Consensus 143 ~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~-G~Ltg~~~~~~ 221 (317)
T TIGR01293 143 MAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC-GLVSGKYDSGI 221 (317)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc-cccCCCCCCCC
Confidence 99999999999999888765432 6788999999999875 3699999999999999999996 998753210
Q ss_pred -------------CC--------------cHHHHHHHHHhCCCchhhc
Q 024751 240 -------------MN--------------NEALKQIAALQQGETEREL 260 (263)
Q Consensus 240 -------------l~--------------~~~l~~ia~~~~~t~~~~~ 260 (263)
+. .+.++++|++|++|++|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqla 269 (317)
T TIGR01293 222 PPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLA 269 (317)
T ss_pred CCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 00 1468999999999999985
No 8
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.9e-45 Score=328.44 Aligned_cols=224 Identities=22% Similarity=0.345 Sum_probs=187.3
Q ss_pred CcCeEEcCCCCCccccCeeceeccc-cC--CChHHHHHHHHHHHHcCCcEEeCCCCcC-----CHHHHHHHHHHHHhcCC
Q 024751 13 NVPEVKLSSASGHRKMPVIGLGSAV-DN--IDESAMKSAVLESIKLGYRHFDTASLYG-----TERALGEAIAEALKLGL 84 (263)
Q Consensus 13 ~~~~~~l~~g~~g~~v~~iglG~~~-~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-----se~~lG~al~~~~~~~~ 84 (263)
.|++++|+ +||++||+||||||. ++ .+.+++.++++.|++.|||+||||+.|| +|+.+|++|++.. +.
T Consensus 12 ~m~~r~lg--~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~--~~ 87 (346)
T PRK09912 12 QMQYRYCG--KSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF--AA 87 (346)
T ss_pred CcceeecC--CCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc--cC
Confidence 36788886 568999999999996 54 3567789999999999999999999998 6999999998631 11
Q ss_pred CCCCccEEEeeCCC----CC----CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHH
Q 024751 85 VASREELFITTKLW----CS----DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNG 156 (263)
Q Consensus 85 ~~~R~~~~I~tK~~----~~----~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (263)
.|+++||+||++ .. ..+++.+++++++||++||+||||+|++|||+...+ .++
T Consensus 88 --~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-----------------~~e 148 (346)
T PRK09912 88 --YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-----------------MEE 148 (346)
T ss_pred --CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-----------------HHH
Confidence 599999999974 21 246889999999999999999999999999954221 788
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHH---hCCCCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCCCC
Q 024751 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILA---FATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAV 230 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~~~ 230 (263)
+|++|++|+++|+||+||||||+.++++++.+ ...+++.++|++||++++. .+++++|+++||++++|+||++
T Consensus 149 ~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~- 227 (346)
T PRK09912 149 TASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ- 227 (346)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC-
Confidence 99999999999999999999999998876654 3456788999999998863 4699999999999999999996
Q ss_pred CCCCCCCC----------------------CCC------cHHHHHHHHHhCCCchhhc
Q 024751 231 GSSWGTNQ----------------------VMN------NEALKQIAALQQGETEREL 260 (263)
Q Consensus 231 G~l~~~~~----------------------~l~------~~~l~~ia~~~~~t~~~~~ 260 (263)
|+|++... .+. .+.+.++|++||+|++|++
T Consensus 228 G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~A 285 (346)
T PRK09912 228 GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMA 285 (346)
T ss_pred ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99875310 000 1568899999999999985
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=6.2e-45 Score=318.07 Aligned_cols=219 Identities=38% Similarity=0.555 Sum_probs=193.0
Q ss_pred EEcCCCCCccccCeeceeccccCC---ChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCcc
Q 024751 17 VKLSSASGHRKMPVIGLGSAVDNI---DESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREE 90 (263)
Q Consensus 17 ~~l~~g~~g~~v~~iglG~~~~~~---~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R~~ 90 (263)
++|+ +||++||+||||||.++. +.+++.++++.|++.|||+||||+.|| +|+.+|++|+.. + .|++
T Consensus 2 r~lg--~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~---~R~~ 73 (285)
T cd06660 2 RTLG--KTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G---PREE 73 (285)
T ss_pred cccC--CCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C---CcCc
Confidence 4555 457999999999999763 678999999999999999999999999 899999999975 1 3999
Q ss_pred EEEeeCCCCCC-----CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHH
Q 024751 91 LFITTKLWCSD-----AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQ 165 (263)
Q Consensus 91 ~~I~tK~~~~~-----~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (263)
++|+||++... .+++.+++++++||++||++|+|+|++|||+.... ...++|++|++++
T Consensus 74 ~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~----------------~~~~~~~~l~~l~ 137 (285)
T cd06660 74 VFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP----------------DIEETLRALEELV 137 (285)
T ss_pred EEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC----------------CHHHHHHHHHHHH
Confidence 99999997653 57899999999999999999999999999965322 2789999999999
Q ss_pred HcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHH--HHHHHHhCCceEEEccCCCCCCCCCCCCCCCC--
Q 024751 166 RHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRK--LVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMN-- 241 (263)
Q Consensus 166 ~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~--~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~-- 241 (263)
++|+||+||||||+.+.+.++++.+..+|.++|++||++.+... ++++|+++||++++|+||++ |.+++......
T Consensus 138 ~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l~~~~~~~~~~ 216 (285)
T cd06660 138 KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLLTGKYLPGAPP 216 (285)
T ss_pred HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-ceecCCCCCCCCC
Confidence 99999999999999999999999877889999999999998754 99999999999999999996 88875433222
Q ss_pred -----cHHHHHHHHHhCCCchhhc
Q 024751 242 -----NEALKQIAALQQGETEREL 260 (263)
Q Consensus 242 -----~~~l~~ia~~~~~t~~~~~ 260 (263)
.+.+..+|++++++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~s~~q~a 240 (285)
T cd06660 217 PEGDLLEALKEIAEKHGVTPAQVA 240 (285)
T ss_pred ChhhHHHHHHHHHHHhCCCHHHHH
Confidence 3678999999999999986
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4.9e-45 Score=327.17 Aligned_cols=236 Identities=24% Similarity=0.306 Sum_probs=188.5
Q ss_pred cCeEEcCCCCCccccCeeceeccccC--CChHHHHHHHHHHHHcCCcEEeCCCCcC----------CHHHHHHHHHHHHh
Q 024751 14 VPEVKLSSASGHRKMPVIGLGSAVDN--IDESAMKSAVLESIKLGYRHFDTASLYG----------TERALGEAIAEALK 81 (263)
Q Consensus 14 ~~~~~l~~g~~g~~v~~iglG~~~~~--~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----------se~~lG~al~~~~~ 81 (263)
|++++|+ +||++||+||||||.++ .+.+++.++++.|++.|||+||||+.|| ||..+|++|+..
T Consensus 1 m~~r~lg--~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~-- 76 (346)
T PRK10625 1 MQYHRIP--HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR-- 76 (346)
T ss_pred CCceecC--CCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc--
Confidence 3567775 56899999999999986 4678999999999999999999999996 899999999863
Q ss_pred cCCCCCCccEEEeeCCCCC------------CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCC--CccccCCCCcc
Q 024751 82 LGLVASREELFITTKLWCS------------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKP--SEKLRNDIPEE 147 (263)
Q Consensus 82 ~~~~~~R~~~~I~tK~~~~------------~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~--~~~~~~~~~~~ 147 (263)
+ .|++++|+||++.. +.+++.+++++++||++||+||||+|++|||+.... +++.. ...+
T Consensus 77 -~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~-~~~~- 150 (346)
T PRK10625 77 -G---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGY-SWTD- 150 (346)
T ss_pred -C---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccccccccc-cccc-
Confidence 3 59999999998531 357899999999999999999999999999964210 00000 0000
Q ss_pred ccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC---C-CCCeeeccccCCCCCc--HHHHHHHHhCCceE
Q 024751 148 DLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA---T-IPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIV 221 (263)
Q Consensus 148 ~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v 221 (263)
......+.++|++|++|+++|+||+||+|||+.+++.+++..+ . ..+.++|.+||+++++ .+++++|+++||++
T Consensus 151 ~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~v 230 (346)
T PRK10625 151 SAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVEL 230 (346)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeE
Confidence 0001237899999999999999999999999999988876532 2 4577899999998765 57999999999999
Q ss_pred EEccCCCCCCCCCCCC-----------CCCC-------------cHHHHHHHHHhCCCchhhc
Q 024751 222 TAFSPLGAVGSSWGTN-----------QVMN-------------NEALKQIAALQQGETEREL 260 (263)
Q Consensus 222 ~a~spl~~~G~l~~~~-----------~~l~-------------~~~l~~ia~~~~~t~~~~~ 260 (263)
++|+||++ |+|++.. ..+. ...+.++|++|++|++|++
T Consensus 231 ia~spL~~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqva 292 (346)
T PRK10625 231 LAYSCLAF-GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMA 292 (346)
T ss_pred EEeccccC-eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999996 9987531 0111 2468899999999999985
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.8e-44 Score=317.51 Aligned_cols=222 Identities=23% Similarity=0.295 Sum_probs=183.3
Q ss_pred EEcCCCCCccccCeeceeccccC-----CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCC
Q 024751 17 VKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASR 88 (263)
Q Consensus 17 ~~l~~g~~g~~v~~iglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R 88 (263)
++|+ +||++||+||||||.++ .+.+++.+++++|++.|||+||||+.|| +|+.+|++|++. +. +|
T Consensus 2 r~lg--~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~~--~R 74 (314)
T PLN02587 2 RELG--STGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---GI--PR 74 (314)
T ss_pred CcCC--CCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---CC--Cc
Confidence 4454 67899999999999875 4788999999999999999999999997 699999999975 43 69
Q ss_pred ccEEEeeCCCC----CCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 024751 89 EELFITTKLWC----SDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEEC 164 (263)
Q Consensus 89 ~~~~I~tK~~~----~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (263)
+++||+||++. ...+++.+++++++||++||+||||+|++|||+...+ .....++|++|++|
T Consensus 75 ~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~--------------~~~~~~~~~~l~~l 140 (314)
T PLN02587 75 EKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSL--------------DQIVNETIPALQKL 140 (314)
T ss_pred ceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcch--------------hhhHHHHHHHHHHH
Confidence 99999999963 2567899999999999999999999999999953111 01156899999999
Q ss_pred HHcCCccEEEecCCCHHHHHHHHHhC---CCCCeeeccccCCCCCc-HHHHHHHHhCCceEEEccCCCCCCCCCCCCCC-
Q 024751 165 QRHGLTKSIGVSNFSPKKIETILAFA---TIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV- 239 (263)
Q Consensus 165 ~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~- 239 (263)
+++||||+||+|||+.+++..+++.. .++++.+|.+|++..+. .+++++|+++||++++|+||++ |+|++....
T Consensus 141 ~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G~L~~~~~~~ 219 (314)
T PLN02587 141 KESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-GLLTENGPPE 219 (314)
T ss_pred HHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-cccCCCCCCC
Confidence 99999999999999999888777642 24555678888876653 5899999999999999999996 999864211
Q ss_pred C--C-------cHHHHHHHHHhCCCchhhc
Q 024751 240 M--N-------NEALKQIAALQQGETEREL 260 (263)
Q Consensus 240 l--~-------~~~l~~ia~~~~~t~~~~~ 260 (263)
. . ...+.++|++|++|++|+.
T Consensus 220 ~~~~~~~~~~~~~~l~~~a~~~~~s~aq~a 249 (314)
T PLN02587 220 WHPAPPELKSACAAAATHCKEKGKNISKLA 249 (314)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 1 0 1246789999999999875
No 12
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.6e-43 Score=308.81 Aligned_cols=209 Identities=34% Similarity=0.603 Sum_probs=179.4
Q ss_pred eeceeccccC---CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCC-----C
Q 024751 30 VIGLGSAVDN---IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKL-----W 98 (263)
Q Consensus 30 ~iglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~-----~ 98 (263)
+||||||+++ .+.+++.++++.|++.|||+||||+.|| +|+.+|++|++. +. +|++++|+||+ +
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~---~~--~r~~~~i~tK~~~~~~~ 75 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS---RV--PRDDIFISTKVYGDGKP 75 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT---SS--TGGGSEEEEEEESSSST
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc---cc--ccccccccccccccccc
Confidence 5899999984 7899999999999999999999999993 899999999983 33 89999999999 6
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC
Q 024751 99 CSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF 178 (263)
Q Consensus 99 ~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 178 (263)
....+++.+++++++||++||+||+|+|++|||+.... ...++|++|++|+++|+||+||||||
T Consensus 76 ~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----------------~~~~~~~~l~~l~~~G~ir~iGvs~~ 139 (283)
T PF00248_consen 76 EPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED----------------ALEEVWEALEELKKEGKIRHIGVSNF 139 (283)
T ss_dssp GGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS----------------HHHHHHHHHHHHHHTTSEEEEEEES-
T ss_pred cccccccccccccccccccccccchhcccccccccccc----------------ccchhhhhhhhccccccccccccccc
Confidence 66788999999999999999999999999999965432 27899999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCeeeccccCCCC--CcHHHHHHHHhCCceEEEccCCCCCCCCCCCCC--------------CCCc
Q 024751 179 SPKKIETILAFATIPPTVNQVEMNPAW--QQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ--------------VMNN 242 (263)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~--------------~l~~ 242 (263)
+++.++++.....++|+++|++||++. ...+++++|+++||++++|+||++ |.+++... ....
T Consensus 140 ~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T PF00248_consen 140 SPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLLTGKYKSPPPPPSRASLRDAQELA 218 (283)
T ss_dssp -HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCGGTTTTTTTTSTTTSGSSTHGGGH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-CccccccccCCCcccccccchhhhhh
Confidence 999999997777899999999999993 357899999999999999999996 88864321 1445
Q ss_pred HHHHHHHHHhCCCchhhc
Q 024751 243 EALKQIAALQQGETEREL 260 (263)
Q Consensus 243 ~~l~~ia~~~~~t~~~~~ 260 (263)
+.+.++|++|++|++|++
T Consensus 219 ~~l~~~a~~~g~s~~q~a 236 (283)
T PF00248_consen 219 DALRELAEEHGVSPAQLA 236 (283)
T ss_dssp HHHHHHHHHHTSSHHHHH
T ss_pred hhhhhhhhhcccccchhh
Confidence 789999999999999875
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-42 Score=303.67 Aligned_cols=212 Identities=23% Similarity=0.314 Sum_probs=179.0
Q ss_pred eEEcCCCCCccccCeeceeccccC--------CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCC
Q 024751 16 EVKLSSASGHRKMPVIGLGSAVDN--------IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGL 84 (263)
Q Consensus 16 ~~~l~~g~~g~~v~~iglG~~~~~--------~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~ 84 (263)
+++|+ | ++||+||||||+++ .+.+++.++++.|++.|||+||||+.|| +|+.+|++++.
T Consensus 9 ~~~l~-g---~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~------ 78 (290)
T PRK10376 9 TFTLG-G---RSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP------ 78 (290)
T ss_pred ceecC-C---eeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc------
Confidence 45666 5 99999999999875 2567899999999999999999999998 68899999963
Q ss_pred CCCCccEEEeeCCC---------CCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHH
Q 024751 85 VASREELFITTKLW---------CSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (263)
Q Consensus 85 ~~~R~~~~I~tK~~---------~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
.|+++||+||+. ....+++.+++++++||++||+||||+|++||+.... .|. .....
T Consensus 79 --~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h------~p~------~~~~~ 144 (290)
T PRK10376 79 --YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGH------GPA------EGSIE 144 (290)
T ss_pred --CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCC------CCC------CCCHH
Confidence 599999999973 2356789999999999999999999999999863110 110 11267
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc-HHHHHHHHhCCceEEEccCCCCCCCCC
Q 024751 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSW 234 (263)
Q Consensus 156 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~a~spl~~~G~l~ 234 (263)
+.|++|++|+++||||+||||||+.+++.++++.+. +.++|++||++.+. .+++++|+++||++++|+||++ +.
T Consensus 145 ~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~-- 219 (290)
T PRK10376 145 EPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT-- 219 (290)
T ss_pred HHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC--
Confidence 899999999999999999999999999999988764 56899999998865 6799999999999999999974 32
Q ss_pred CCCCCCCcHHHHHHHHHhCCCchhhc
Q 024751 235 GTNQVMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 235 ~~~~~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
....+.+.++|++|++|++|++
T Consensus 220 ----~~~~~~l~~ia~~~~~t~aq~a 241 (290)
T PRK10376 220 ----PLQSSTLSDVAASLGATPMQVA 241 (290)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHH
Confidence 1235789999999999999985
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=8.3e-42 Score=299.15 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=173.6
Q ss_pred ccccCeeceeccccC------------CChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCccE
Q 024751 25 HRKMPVIGLGSAVDN------------IDESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREEL 91 (263)
Q Consensus 25 g~~v~~iglG~~~~~------------~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~~~~~~~~~R~~~ 91 (263)
+++||+||||||.++ .+.+++.++++.|++.|||+||||+.|| ||+.+|++|+.. .++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~-------~~~~~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP-------VPFRV 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC-------CceEe
Confidence 489999999999876 2678899999999999999999999999 799999999741 35679
Q ss_pred EEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc
Q 024751 92 FITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK 171 (263)
Q Consensus 92 ~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 171 (263)
+|+||.. +.+++.+++++++||++||+||||+|++|||+.... + ...++|++|++|+++||||
T Consensus 75 ~i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~------~---------~~~~~~~~l~~l~~~Gkir 137 (292)
T PRK14863 75 TLSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELFG------P---------HGAALWERLQALKDQGLFA 137 (292)
T ss_pred ecccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcC------c---------chHHHHHHHHHHHHcCCcc
Confidence 9999853 346799999999999999999999999999853110 0 1357899999999999999
Q ss_pred EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCCCCCCCCCCCC----CCC---
Q 024751 172 SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ----VMN--- 241 (263)
Q Consensus 172 ~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~----~l~--- 241 (263)
+||||||+++++.++.. ..+|.++|++||+++++ .+++++|+++||++++|+||++ |+|++... .+.
T Consensus 138 ~iGvSn~~~~~~~~~~~--~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L~~~~~~~~~~~~~~~ 214 (292)
T PRK14863 138 KIGVSAHASDDPVGVAR--RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLLFLPPDRVPAQLKGAS 214 (292)
T ss_pred eEeeeccCHHHHHHHHh--cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccccCCcccCccchhhhh
Confidence 99999999999888765 35788999999999875 3599999999999999999996 98875321 111
Q ss_pred --cHHHHHHHHHhCCCchhhc
Q 024751 242 --NEALKQIAALQQGETEREL 260 (263)
Q Consensus 242 --~~~l~~ia~~~~~t~~~~~ 260 (263)
-..+.+++.++++|++|+.
T Consensus 215 ~~~~~~~~~~~~~~~s~aqla 235 (292)
T PRK14863 215 GRLSRVRRMIAEGRSDPLQAA 235 (292)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 1335677888899998864
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=283.88 Aligned_cols=222 Identities=27% Similarity=0.422 Sum_probs=193.9
Q ss_pred cCeEEcCCCCCccccCeeceeccccC---CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCC
Q 024751 14 VPEVKLSSASGHRKMPVIGLGSAVDN---IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVAS 87 (263)
Q Consensus 14 ~~~~~l~~g~~g~~v~~iglG~~~~~---~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~ 87 (263)
|.+.+|++. |+++|+|.+|+|++. +.+.+....+..|++.|||+||-|+.|| .|+.+|++|+.. ++ -
T Consensus 1 m~rI~l~~~--~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~--p~---l 73 (298)
T COG4989 1 MQRITLAPD--GLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA--PG---L 73 (298)
T ss_pred CceEEecCC--CccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC--hh---h
Confidence 356677743 599999999999986 6778999999999999999999999999 799999999964 23 5
Q ss_pred CccEEEeeCCC------------CCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHH
Q 024751 88 REELFITTKLW------------CSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYN 155 (263)
Q Consensus 88 R~~~~I~tK~~------------~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
|+++.|.||++ ..+.+.++|..++|+||++|++||+|++++|+|++ .++.+
T Consensus 74 RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDp-----------------Lmd~e 136 (298)
T COG4989 74 REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDP-----------------LMDAE 136 (298)
T ss_pred hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcc-----------------cCCHH
Confidence 99999999984 23667899999999999999999999999999965 45589
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCCCCCC
Q 024751 156 GVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLGAVGS 232 (263)
Q Consensus 156 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~~~G~ 232 (263)
++.++|..|.+.||||++|||||++.|++.+.+......++||+++|+++.. .+.+++|+.+.|.+++||||+++|+
T Consensus 137 eVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~ 216 (298)
T COG4989 137 EVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL 216 (298)
T ss_pred HHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc
Confidence 9999999999999999999999999999999998888999999999999875 5799999999999999999998555
Q ss_pred CCCCCCCC--CcHHHHHHHHHhC-CCchhhc
Q 024751 233 SWGTNQVM--NNEALKQIAALQQ-GETEREL 260 (263)
Q Consensus 233 l~~~~~~l--~~~~l~~ia~~~~-~t~~~~~ 260 (263)
+.+ ...+ ...++.+||.++| +|.++|.
T Consensus 217 F~g-~~~~q~l~~~l~~ia~e~ga~s~~~Va 246 (298)
T COG4989 217 FLG-DDKFQRLRKVLDRIAEEYGAVSITAVA 246 (298)
T ss_pred ccC-CcchHHHHHHHHHHHHHhCcccHHHHH
Confidence 555 3332 2578999999999 6887764
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.3e-35 Score=245.02 Aligned_cols=201 Identities=26% Similarity=0.316 Sum_probs=167.5
Q ss_pred cCeEEcCCCCCccccCeeceeccccC-----CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCC
Q 024751 14 VPEVKLSSASGHRKMPVIGLGSAVDN-----IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLV 85 (263)
Q Consensus 14 ~~~~~l~~g~~g~~v~~iglG~~~~~-----~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~ 85 (263)
|.++++ |+||++||+||||...++ .+.++....+.+|+..|||+|||++-|| +|..+|.++++.
T Consensus 22 meyR~l--g~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~v------ 93 (342)
T KOG1576|consen 22 MEYRQL--GSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDV------ 93 (342)
T ss_pred HHHhhc--CCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhC------
Confidence 344554 478999999999998775 4788889999999999999999999999 899999999986
Q ss_pred CCCccEEEeeCCCCC--------CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHH
Q 024751 86 ASREELFITTKLWCS--------DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGV 157 (263)
Q Consensus 86 ~~R~~~~I~tK~~~~--------~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (263)
||+.+||+||++.. +++++.+++++++||++|++||+|++++|..+..... +..+.++
T Consensus 94 -PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l-------------d~vl~Et 159 (342)
T KOG1576|consen 94 -PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL-------------DIVLNET 159 (342)
T ss_pred -ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc-------------cHHHHHH
Confidence 99999999999643 5678999999999999999999999999988653211 2347899
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC--CCCeeeccccCCCCCc-HHHHHHHHhCCceEEEccCCCCCCCCC
Q 024751 158 WEAMEECQRHGLTKSIGVSNFSPKKIETILAFAT--IPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSW 234 (263)
Q Consensus 158 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~a~spl~~~G~l~ 234 (263)
+.+|++|+++||||+|||+.++.+.+.++++... ++.+.+..+|++.+.. -..+++.+++|++|+.-++++- |+|+
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gLLt 238 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GLLT 238 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HHhh
Confidence 9999999999999999999999999999997654 4444444555554433 3577788999999999999995 9998
Q ss_pred CCC
Q 024751 235 GTN 237 (263)
Q Consensus 235 ~~~ 237 (263)
+.+
T Consensus 239 ~~g 241 (342)
T KOG1576|consen 239 NQG 241 (342)
T ss_pred cCC
Confidence 543
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=253.19 Aligned_cols=194 Identities=24% Similarity=0.339 Sum_probs=163.6
Q ss_pred eEEcCCCCCccccCeeceeccccC------CChHHHHHHHHHHHHcCCcEEeCCCCc--C-CHHHHHHHHHHHHhcCCCC
Q 024751 16 EVKLSSASGHRKMPVIGLGSAVDN------IDESAMKSAVLESIKLGYRHFDTASLY--G-TERALGEAIAEALKLGLVA 86 (263)
Q Consensus 16 ~~~l~~g~~g~~v~~iglG~~~~~------~~~~~~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~al~~~~~~~~~~ 86 (263)
++++. +||.++|.+|||+|++. ++.+.+.+++++|++.|||+||||..| | ||..+|+||++.
T Consensus 3 yr~~~--k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------- 73 (391)
T COG1453 3 YRKFP--KTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------- 73 (391)
T ss_pred hhhcC--CCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc-------
Confidence 44444 56899999999999987 488999999999999999999999999 7 899999999985
Q ss_pred CCccEEEeeCCCCC-CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHH
Q 024751 87 SREELFITTKLWCS-DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQ 165 (263)
Q Consensus 87 ~R~~~~I~tK~~~~-~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (263)
.|++++++||+.+. -.+++++++-++++|++|++||+|+|++|..... .+........++.+++++
T Consensus 74 ~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-------------~~~k~~~~g~~df~~kak 140 (391)
T COG1453 74 YREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-------------TWEKIERLGVFDFLEKAK 140 (391)
T ss_pred ccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-------------HHHHHHccChHHHHHHHH
Confidence 89999999999632 3467999999999999999999999999988431 111111234789999999
Q ss_pred HcCCccEEEecCCC-HHHHHHHHHhCCCCCeeeccccCCCCCc----HHHHHHHHhCCceEEEccCCCCCCCCC
Q 024751 166 RHGLTKSIGVSNFS-PKKIETILAFATIPPTVNQVEMNPAWQQ----RKLVEFCKSKSIIVTAFSPLGAVGSSW 234 (263)
Q Consensus 166 ~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~i~~~~~~gi~v~a~spl~~~G~l~ 234 (263)
++|+||++|+|.|+ .+.+.+++....+ .++|++||.++.. .+.+++|.++|++|+.++|+.+ |.|.
T Consensus 141 ~eGkIr~~GFSfHgs~e~~~~iv~a~~~--dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g-G~l~ 211 (391)
T COG1453 141 AEGKIRNAGFSFHGSTEVFKEIVDAYPW--DFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG-GGLL 211 (391)
T ss_pred hcCcEEEeeecCCCCHHHHHHHHhcCCc--ceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-CCcc
Confidence 99999999999997 5778899887764 4888888877653 3899999999999999999997 5443
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.84 E-value=2.3e-08 Score=82.88 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=95.8
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC----CCcccEE-----------EeecCCCCCCCccccCCCCcccccc
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQ----IEYVDLY-----------LIHWPMSAKPSEKLRNDIPEEDLVS 151 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg----~~~iDl~-----------~lh~p~~~~~~~~~~~~~~~~~~~~ 151 (263)
.++++-+..|++..++.-+.++...+..++-+- +..+|.+ .+--+.......+.+......+...
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 577888888987776666666666666554331 1111211 1111100000000000001112234
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCC-cHHHHHHHHhCCceEEEcc
Q 024751 152 LDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ-QRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 152 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~~i~~~~~~gi~v~a~s 225 (263)
......|+.||+++.+|+|..||+|.|+..+|+++++.+.+.|.++|+++.-++. +.++.+||..++|.+..++
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 5578899999999999999999999999999999999999999999999987765 6899999999999999876
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.10 E-value=0.84 Score=37.47 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=75.0
Q ss_pred HHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q 024751 111 LKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA 190 (263)
Q Consensus 111 ~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 190 (263)
++..|..+.-+.+|.+.+..-- -....-.+.|+++..-|+---|++.||..+....-+-..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL-------------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~ 124 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL-------------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLR 124 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH-------------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhc
Confidence 4556677777778888876431 113445566888888898888999999988877666645
Q ss_pred CCCCeeeccccCCCCCc-------HHHHHHHHhCCceEEEccCCCC
Q 024751 191 TIPPTVNQVEMNPAWQQ-------RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 191 ~~~~~~~q~~~~~~~~~-------~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+-.|+.-.++|+-++.+ .+.-++|++.|+.|.-..++.+
T Consensus 125 GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 125 GRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 55677778888776654 5889999999999999999986
No 20
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.06 E-value=10 Score=33.42 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
.++++..+.+..+.+.|++.|..--.-. .+...=+++++. -. ++-|..+... ..+.+.. ..+-+.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-------~g-~~~l~vD~n~-~~~~~~A-~~~~~~l~~ 202 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-------AP-DARLRVDANQ-GWTPEEA-VELLRELAE 202 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-------CC-CCeEEEeCCC-CcCHHHH-HHHHHHHHh
Confidence 3567778888999999999998643111 122222334432 12 5667777743 2333332 222233444
Q ss_pred hCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCee
Q 024751 118 LQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTV 196 (263)
Q Consensus 118 Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~ 196 (263)
. ++.++..|.. ..-|+.+.+|++.-.|. ..|=+-++.+.+.++++...++ +
T Consensus 203 ~-----~l~~iEeP~~---------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~ 254 (316)
T cd03319 203 L-----GVELIEQPVP---------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--G 254 (316)
T ss_pred c-----CCCEEECCCC---------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--E
Confidence 4 4445555521 12356777888776666 3345567889999999877655 6
Q ss_pred eccccCCCC---CcHHHHHHHHhCCceEEEccCCCC
Q 024751 197 NQVEMNPAW---QQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 197 ~q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+|......- .-.++..+|+++|+.++..+-+.+
T Consensus 255 v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 255 INIKLMKTGGLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred EEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 666654432 226799999999999998765543
No 21
>PRK08392 hypothetical protein; Provisional
Probab=89.57 E-value=11 Score=31.35 Aligned_cols=181 Identities=16% Similarity=0.144 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEe--eCCCCCCCChhHHHHHHHHHHHHhCC
Q 024751 45 MKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFIT--TKLWCSDAHRDLVVPALKKSLKTLQI 120 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~--tK~~~~~~~~~~i~~~~~~sL~~Lg~ 120 (263)
..+.++.|.+.|++.+=.+++.. ....+...+++..+-. .+.++.|. .-+.... +. .+..+..++. .
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~---~~~~i~il~GiE~~~~~---~~-~~~~~~~~~~--~ 86 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG---EESEIVVLAGIEANITP---NG-VDITDDFAKK--L 86 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh---hccCceEEEeEEeeecC---Cc-chhHHHHHhh--C
Confidence 56889999999999997777753 2222333333221111 12223222 2221111 11 2233344443 3
Q ss_pred CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecC-------C-CHHHHHHHHHhC--
Q 024751 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN-------F-SPKKIETILAFA-- 190 (263)
Q Consensus 121 ~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-------~-~~~~l~~~~~~~-- 190 (263)
||+ +.-+|.... . ......++.+.++.+.+.+.-+|=-. + ..+.++++++..
T Consensus 87 D~v-I~SvH~~~~--~---------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~ 148 (215)
T PRK08392 87 DYV-IASVHEWFG--R---------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEA 148 (215)
T ss_pred CEE-EEEeecCcC--C---------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHH
Confidence 444 556684311 0 01456778888888888777666321 1 123444444432
Q ss_pred -CCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhcc
Q 024751 191 -TIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETERELG 261 (263)
Q Consensus 191 -~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~~ 261 (263)
+...-+|- ....+...+++.|++.|+.++.-|=-.. ...+-.-....+++++.|.+++.++.
T Consensus 149 ~g~~lEiNt---~~~~p~~~~l~~~~~~G~~~~igSDAH~------~~~vg~~~~a~~~~~~~g~~~~~~~~ 211 (215)
T PRK08392 149 YGKAFEISS---RYRVPDLEFIRECIKRGIKLTFASDAHR------PEDVGNVSWSLKVFKKAGGKKEDLLF 211 (215)
T ss_pred hCCEEEEeC---CCCCCCHHHHHHHHHcCCEEEEeCCCCC------hHHCCcHHHHHHHHHHcCCCHHHeec
Confidence 33222331 1123446899999999987654332221 11122235678999999999988764
No 22
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=89.32 E-value=16 Score=32.81 Aligned_cols=149 Identities=10% Similarity=0.137 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCC--------HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGT--------ERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALK 112 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs--------e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 112 (263)
+.++..+.++.+.+.|++.|-.--..+. ....=+++++. -.+++.|...... ..+.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~-------~g~~~~l~vDaN~-~~~~~~a~---- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA-------VGPDVDLMVDANG-RWDLAEAI---- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh-------hCCCCEEEEECCC-CCCHHHHH----
Confidence 4677888888899999998865332222 12222344433 2345566666532 23333333
Q ss_pred HHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCC
Q 024751 113 KSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFAT 191 (263)
Q Consensus 113 ~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~ 191 (263)
+.++.|. ..++.+++.|.+ ...++.+.+|++.-.+. ..|=+.++.+.+.++++...
T Consensus 207 ~~~~~l~--~~~i~~iEqP~~---------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~ 263 (357)
T cd03316 207 RLARALE--EYDLFWFEEPVP---------------------PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA 263 (357)
T ss_pred HHHHHhC--ccCCCeEcCCCC---------------------ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC
Confidence 2333332 234556666622 12356677777775554 44455678999999998766
Q ss_pred CCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccC
Q 024751 192 IPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 192 ~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~sp 226 (263)
.+ ++|+...-+- +-.++...|+++|+.++..+-
T Consensus 264 ~d--~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 264 VD--IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CC--EEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 55 6666654432 236899999999999887764
No 23
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=88.38 E-value=13 Score=34.95 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCC-CccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC----cccEEEeecCCCCCCCc
Q 024751 64 SLYGTERALGEAIAEALKLGLVAS-REELFITTKLWCSDAHRDLVVPALKKSLKTLQIE----YVDLYLIHWPMSAKPSE 138 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~-R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~----~iDl~~lh~p~~~~~~~ 138 (263)
-.||.++.+-++|++..+.. + .+-++|.|-..+.-. -+++..-+++.-+.++.+ .+.++.+|.|......
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~---~~p~~I~V~tTC~~eiI-GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~- 140 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRY---PDLRVIPIITTCSTEII-GDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSM- 140 (454)
T ss_pred eEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHhhh-ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCH-
Confidence 45888999999999865432 2 345778777643211 133333333332222111 3678888888553211
Q ss_pred cccCCCCccccccCCHHHHHHHHHH-HHH----cCCccEEEecC--CCHHHHHHHHHhCCCCCee
Q 024751 139 KLRNDIPEEDLVSLDYNGVWEAMEE-CQR----HGLTKSIGVSN--FSPKKIETILAFATIPPTV 196 (263)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~~----~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~~ 196 (263)
..-...+++++-+ +.. +++|.-||-.+ .+.+.++++++..++++.+
T Consensus 141 ------------~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 141 ------------VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred ------------HHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 0012333333322 221 46688887332 3357788888888776543
No 24
>PRK06361 hypothetical protein; Provisional
Probab=86.91 E-value=16 Score=30.11 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCcEEeCCCCcC--CHH-H---HHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh
Q 024751 45 MKSAVLESIKLGYRHFDTASLYG--TER-A---LGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Yg--se~-~---lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 118 (263)
..++++.|.+.|+..+=.+++.. +.. . +-+..++. +.. .+=+++.-.-+.. ..++.+ ..+...+.++
T Consensus 12 ~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~~---~~i~v~~GiE~~~--~~~~~~-~~~~~~~~~~ 84 (212)
T PRK06361 12 PSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-ELY---WDIEVIPGVELTH--VPPKLI-PKLAKKARDL 84 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hhc---CCCEEEEEEEEcc--cCchhh-chHHHHHHHC
Confidence 57899999999999887777754 211 1 11112211 000 1112333332321 112222 3333455555
Q ss_pred CCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCCeee
Q 024751 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVN 197 (263)
Q Consensus 119 g~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~ 197 (263)
+ +|+..+|....+.+ . . ...-.++.+.|.+.-+|=-.. ..+.+ +++...++.+-++
T Consensus 85 ~---~~~~svH~~~~~~~-----------------~-~-~~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~~lEin 141 (212)
T PRK06361 85 G---AEIVVVHGETIVEP-----------------V-E-EGTNLAAIECEDVDILAHPGLITEEEA-ELAAENGVFLEIT 141 (212)
T ss_pred C---CEEEEECCCCcchh-----------------h-h-hhhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCeEEEEE
Confidence 5 57778994321111 0 0 001145667787765553222 22333 3334344333332
Q ss_pred ccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhc
Q 024751 198 QVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 198 q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
- ..........++++|++.|+.++..|.... ...+.....+.+++++.+.++++|+
T Consensus 142 ~-~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v~ 197 (212)
T PRK06361 142 A-RKGHSLTNGHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKELE 197 (212)
T ss_pred C-CCCcccchHHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1 011112235799999999999988877764 2233345678889999998888775
No 25
>PRK08609 hypothetical protein; Provisional
Probab=85.29 E-value=37 Score=32.83 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCcEEeCCCCcC--------CHHHHHHHHHHH--HhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHH
Q 024751 45 MKSAVLESIKLGYRHFDTASLYG--------TERALGEAIAEA--LKLGLVASREELFITTKLWCSDAHRDLVVPALKKS 114 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Yg--------se~~lG~al~~~--~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 114 (263)
..++++.|.+.|++.+=.++++. +...+-..+++. ..... ..=+|+.-.-+. +.++......+..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~--~~i~Il~GiEv~---i~~~g~~d~~~~~ 425 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKY--PEIDILSGIEMD---ILPDGSLDYDDEV 425 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEe---ecCCcchhhcHHH
Confidence 55699999999999998888752 222233222211 01110 111233322221 1111122223334
Q ss_pred HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecC------CC--HHHHHHH
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN------FS--PKKIETI 186 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~~--~~~l~~~ 186 (263)
|+. .||+ +.-+|++... ...++++.+.++.+.|.+--||=-. +. ...++++
T Consensus 426 L~~--~D~v-I~SvH~~~~~------------------~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i 484 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFSQ------------------SEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQL 484 (570)
T ss_pred HHh--hCEE-EEEeecCCCC------------------CHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHH
Confidence 544 3554 6667865211 1466788899988888887776332 11 2334444
Q ss_pred HHhCCCCCeeeccccCCCC--CcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhcc
Q 024751 187 LAFATIPPTVNQVEMNPAW--QQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETERELG 261 (263)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~--~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~~ 261 (263)
++.+.-.=.+.|++-++.. ....++..|.+.|+.++. ++=+. ....+-.-..-..+|++-+.+++.|+-
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i-gSDAH-----~~~~l~~~~~~v~~ar~~~~~~~~v~N 555 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAI-NTDAH-----HTEMLDDMKYGVATARKGWIQKDRVIN 555 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEE-ECCCC-----ChhhhCcHHHHHHHHHHcCCCHHHccc
Confidence 4432211125566655442 236799999999997544 33332 122333445678999999999998875
No 26
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=83.10 E-value=40 Score=31.35 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=90.0
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC-cccEEEeecCCCCCCCcccc
Q 024751 63 ASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE-YVDLYLIHWPMSAKPSEKLR 141 (263)
Q Consensus 63 A~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~-~iDl~~lh~p~~~~~~~~~~ 141 (263)
.-.||.++.+-++|++..+.. +.+-++|.|-.-+.-. -+++...+++.-++.... .+.++.++.|......
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~---~p~~I~v~ttC~~~ii-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~---- 135 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY---KPDMIAVSTTCMAEVI-GDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSH---- 135 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHhhh-hccHHHHHHHHHHhccCCCCCeEEEecCCCCccCH----
Confidence 345888999999998875443 4556777776643211 133444444333333211 3688888877443210
Q ss_pred CCCCccccccCCHHHHHHHHHH-HH-------HcCCccEEEecC--CC-HHHHHHHHHhCCCCCeeec------------
Q 024751 142 NDIPEEDLVSLDYNGVWEAMEE-CQ-------RHGLTKSIGVSN--FS-PKKIETILAFATIPPTVNQ------------ 198 (263)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~-l~-------~~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~~~q------------ 198 (263)
..-...++++|-+ +. +.+.|.-||-.+ .+ .+.+.++++..++++.+.-
T Consensus 136 ---------~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~ 206 (435)
T cd01974 136 ---------ITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILPDTSDVLDTPADG 206 (435)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEecccccccCCCCCC
Confidence 0013334444432 22 233465665222 22 6789999998887754310
Q ss_pred ----cc---------------cCCCCC---cHHHHHHHHh-CCceEEEcc-CCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 199 ----VE---------------MNPAWQ---QRKLVEFCKS-KSIIVTAFS-PLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 199 ----~~---------------~~~~~~---~~~~i~~~~~-~gi~v~a~s-pl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
+. +|+... .....++.++ .||.++... |+|-. -.+..++++++..+.
T Consensus 207 ~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~~~p~G~~---------~t~~~l~~l~~~~g~ 277 (435)
T cd01974 207 EYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLNMPIGVA---------ATDEFLMALSELTGK 277 (435)
T ss_pred CccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeecCCCcChH---------HHHHHHHHHHHHhCC
Confidence 00 111111 1345666564 799888875 66530 124567777777776
Q ss_pred Cch
Q 024751 255 ETE 257 (263)
Q Consensus 255 t~~ 257 (263)
..+
T Consensus 278 ~~~ 280 (435)
T cd01974 278 PIP 280 (435)
T ss_pred CCC
Confidence 643
No 27
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=82.82 E-value=36 Score=30.72 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 119 (263)
.+.++..+.+..+++.|++.|=.-- .+ .=+++++. -.+++.|..-.. ..++++.. .+.++.|.
T Consensus 125 ~~~~~~~~~a~~~~~~Gf~~~KiKv----~~-~v~avre~-------~G~~~~l~vDaN-~~w~~~~A----~~~~~~l~ 187 (361)
T cd03322 125 RDIPELLEAVERHLAQGYRAIRVQL----PK-LFEAVREK-------FGFEFHLLHDVH-HRLTPNQA----ARFGKDVE 187 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeCH----HH-HHHHHHhc-------cCCCceEEEECC-CCCCHHHH----HHHHHHhh
Confidence 3456666777888889998773211 11 12333432 233444544442 22344432 22233332
Q ss_pred CCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeec
Q 024751 120 IEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQ 198 (263)
Q Consensus 120 ~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q 198 (263)
.+++.++..|.+ .+-++.+.+|++...+. ..|=|-++...+..+++...++ ++|
T Consensus 188 --~~~l~~iEeP~~---------------------~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~d--i~~ 242 (361)
T cd03322 188 --PYRLFWMEDPTP---------------------AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLID--YIR 242 (361)
T ss_pred --hcCCCEEECCCC---------------------cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCC--EEe
Confidence 346777777632 22366788888887665 6677778899999998876544 777
Q ss_pred cccCCC---CCcHHHHHHHHhCCceEEEccCC
Q 024751 199 VEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 199 ~~~~~~---~~~~~~i~~~~~~gi~v~a~spl 227 (263)
....-+ ..-.++.+.|+++|+.++.++..
T Consensus 243 ~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 243 TTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 666543 23368999999999999876543
No 28
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=82.65 E-value=14 Score=31.21 Aligned_cols=171 Identities=9% Similarity=0.029 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE 121 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~ 121 (263)
.....+++..|.+.|+..+=.+++...........+.. . ++-|-.-+-....+++.+... +++. ..
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~-------~--~i~Il~GiEi~~~~~~~~~~~----~~~~-~~ 80 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL-------L--GFEIFRGVEIVASNPSKLRGL----VGKF-RK 80 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh-------c--CCcEEeeEEEecCCHHHHHHH----HHhc-cC
Confidence 44578899999999999887776643210001111111 1 122222221112223333333 3332 23
Q ss_pred cccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC---C---HHHHHHHHHhCCCCCe
Q 024751 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF---S---PKKIETILAFATIPPT 195 (263)
Q Consensus 122 ~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~---~---~~~l~~~~~~~~~~~~ 195 (263)
.+|++.+|.. .+. ......+.+.+--||--.. . ...+.++....++
T Consensus 81 ~~d~v~v~~~----------------------~~~---~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv--- 132 (237)
T PRK00912 81 KVDVLAVHGG----------------------DEK---VNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV--- 132 (237)
T ss_pred cccEEEEeCC----------------------CHH---HHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe---
Confidence 5788889921 111 1134677788877775432 1 1222233333333
Q ss_pred eeccccCCCCC------------cHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhc
Q 024751 196 VNQVEMNPAWQ------------QRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 196 ~~q~~~~~~~~------------~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
...++++++.. ...++..|++.|+.++.-|=-.. ...+-.-.....+++..|.+.+++.
T Consensus 133 ~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~------~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 133 AIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMS------CYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc------ccccCCHHHHHHHHHHcCCCHHHHH
Confidence 34445543311 14689999999988875443322 1222233456888888888877764
No 29
>PRK14017 galactonate dehydratase; Provisional
Probab=82.29 E-value=29 Score=31.57 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCC-----CcCCHH------HHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTAS-----LYGTER------ALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVP 109 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~-----~Ygse~------~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 109 (263)
++++..+.+..+++.|++.|=.-. .++.+. ..=+++++. -.+++.|..-.. ..++.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~-------~g~~~~l~vDaN-~~w~~~~A-- 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA-------VGPEIGIGVDFH-GRVHKPMA-- 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH-------hCCCCeEEEECC-CCCCHHHH--
Confidence 567777888888899999875421 112211 112233432 123444444442 22333332
Q ss_pred HHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHH
Q 024751 110 ALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILA 188 (263)
Q Consensus 110 ~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~ 188 (263)
.+.++.|. .+++.++..|... .-++.+.+|++...+. ..|=|-++...+..+++
T Consensus 194 --~~~~~~l~--~~~~~~iEeP~~~---------------------~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~ 248 (382)
T PRK14017 194 --KVLAKELE--PYRPMFIEEPVLP---------------------ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLE 248 (382)
T ss_pred --HHHHHhhc--ccCCCeEECCCCc---------------------CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHH
Confidence 33333342 2466677766321 2246788888877665 55667788999999998
Q ss_pred hCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccC
Q 024751 189 FATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 189 ~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~sp 226 (263)
...++ ++|+..+.+- .-.++.+.|+++||.++.++.
T Consensus 249 ~~a~d--~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 249 AGGVD--IIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred cCCCC--eEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 76555 6776665432 236899999999999998765
No 30
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.46 E-value=11 Score=34.64 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCC-CCCCChhHHHHHHHHHHHHhC
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLW-CSDAHRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~-~~~~~~~~i~~~~~~sL~~Lg 119 (263)
++.....+++.|++.|++++|||........+.+..+ +..+.+..-++ .+..+---....+++-.+ .
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~----------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK----------KAGITAVLGCGFDPGITNVLAAYAAKELFD--E 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH----------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--c
Confidence 3455678999999999999999987755333333333 22344444442 233321222222222222 5
Q ss_pred CCcccEEEeecCCCC
Q 024751 120 IEYVDLYLIHWPMSA 134 (263)
Q Consensus 120 ~~~iDl~~lh~p~~~ 134 (263)
+.++|+|..+-|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 889999999988654
No 31
>PRK07945 hypothetical protein; Provisional
Probab=78.61 E-value=49 Score=29.63 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcC--------CHHHHHHHHHHHH--hcCCCCCCccEEEeeC--CC-CCCCChhHHH
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYG--------TERALGEAIAEAL--KLGLVASREELFITTK--LW-CSDAHRDLVV 108 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg--------se~~lG~al~~~~--~~~~~~~R~~~~I~tK--~~-~~~~~~~~i~ 108 (263)
.....+++..|.+.|+..+=.+++.. +...+-+.++... +.. .++ +.|-.= +. .++...+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~k---y~~-I~Il~GiE~d~~~~g~~~~~- 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEE---LAP-FRILTGIEVDILDDGSLDQE- 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHh---cCC-ceEEEEeEecccCCCCcchh-
Confidence 34467899999999999887776632 2222222232210 011 122 333222 21 112212222
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecC-----------
Q 024751 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN----------- 177 (263)
Q Consensus 109 ~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----------- 177 (263)
++.|+. .||+ +..+|+.... +.....+.|.+..+.+.+.-||=-.
T Consensus 185 ---~~~l~~--~D~v-IgSvH~~~~~------------------~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~ 240 (335)
T PRK07945 185 ---PELLDR--LDVV-VASVHSKLRM------------------DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTR 240 (335)
T ss_pred ---HHHHHh--CCEE-EEEeecCCCC------------------CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCC
Confidence 333333 4454 6667875211 1345567888888888877777221
Q ss_pred ----CCHHHHHHHHHhCCCCCeeeccccCCC--CCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHH
Q 024751 178 ----FSPKKIETILAFATIPPTVNQVEMNPA--WQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAL 251 (263)
Q Consensus 178 ----~~~~~l~~~~~~~~~~~~~~q~~~~~~--~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~ 251 (263)
+..+.+-+++...++.+-+| -+.. .+...+++.|++.|+.++.-|=-.. ...+-.-..-.++|++
T Consensus 241 ~~~~~~~~~i~~a~~e~g~~lEIN---t~~~r~~P~~~il~~a~e~G~~vtigSDAH~------p~~v~~~~~~~~~a~~ 311 (335)
T PRK07945 241 PESKFDAEAVFAACREHGTAVEIN---SRPERRDPPTRLLRLALDAGCLFSIDTDAHA------PGQLDWLGYGCERAEE 311 (335)
T ss_pred ChhhcCHHHHHHHHHHhCCEEEEe---CCCCCCCChHHHHHHHHHcCCeEEecCCCCC------hhhcchHHHHHHHHHH
Confidence 22233333333333333233 2222 2346799999999998644332221 1122222447888899
Q ss_pred hCCCchhhcc
Q 024751 252 QQGETERELG 261 (263)
Q Consensus 252 ~~~t~~~~~~ 261 (263)
.+.+++.|+.
T Consensus 312 ~g~~~~~i~n 321 (335)
T PRK07945 312 AGVPADRIVN 321 (335)
T ss_pred cCCCHHHccc
Confidence 9999988875
No 32
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=78.48 E-value=31 Score=30.78 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=50.4
Q ss_pred EEecCC---CHHHHHHHHHhCC-CCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHH
Q 024751 173 IGVSNF---SPKKIETILAFAT-IPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQI 248 (263)
Q Consensus 173 iGvs~~---~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~i 248 (263)
|..|.. +++.+++.++.+. -+|.++-.... .-..+.+.|+++|..+++.+|..- -....+...
T Consensus 129 Id~s~n~~kD~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~Dl----------n~ak~L~~~ 195 (319)
T PRK04452 129 IGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPLDI----------NLAKQLNIL 195 (319)
T ss_pred EecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHHHH----------HHHHHHHHH
Confidence 555543 7899999999876 44666644421 125799999999999999987642 112345566
Q ss_pred HHHhCCCchhhc
Q 024751 249 AALQQGETEREL 260 (263)
Q Consensus 249 a~~~~~t~~~~~ 260 (263)
+.++|+.++.++
T Consensus 196 l~~~Gi~~edIv 207 (319)
T PRK04452 196 LTELGVPRERIV 207 (319)
T ss_pred HHHcCCCHHHEE
Confidence 667777665543
No 33
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=77.71 E-value=1.5 Score=39.49 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC--CcHHHHHHHHhCCce
Q 024751 165 QRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW--QQRKLVEFCKSKSII 220 (263)
Q Consensus 165 ~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~--~~~~~i~~~~~~gi~ 220 (263)
-=-|+||++||--++.+.+.++.+..+-+ .+.+.+..++. ....+++.+++.||+
T Consensus 261 TCVGriRYlGVlLYDaDrv~eaAs~~~e~-dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 261 TCVGRIRYLGVLLYDADRVEEAASTENEK-DLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhcceeeeeeeeecHHHHHHhhcCccHH-HHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 34599999999999999999987765421 23333333332 234677777776654
No 34
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=77.65 E-value=63 Score=30.33 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC----cccEEEeecCCCCCCCcc
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE----YVDLYLIHWPMSAKPSEK 139 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~----~iDl~~lh~p~~~~~~~~ 139 (263)
-.||.++-+-++|++..+... +.+-++|.|-....-. -+++..-+++.-+++..+ .+.++.+|.|......
T Consensus 69 vVfGG~~kL~~aI~~~~~~~~--~p~~I~V~ttC~~eiI-GDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~-- 143 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRYP--NLRVIPIITTCSTETI-GDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQ-- 143 (457)
T ss_pred eEECcHHHHHHHHHHHHHhCC--CCCEEEEECCchHHhh-cCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcH--
Confidence 458899999999998754320 1345777777643211 134444444432222111 3678888988654211
Q ss_pred ccCCCCccccccCCHHHHHHHHHHHH------HcCCccEEEecCC--CHHHHHHHHHhCCCCCee
Q 024751 140 LRNDIPEEDLVSLDYNGVWEAMEECQ------RHGLTKSIGVSNF--SPKKIETILAFATIPPTV 196 (263)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~ 196 (263)
..-...+++++-+.. .+++|.-||-.+. +.+.++++++..++++.+
T Consensus 144 -----------~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 144 -----------VTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred -----------HHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 011344444444322 2466877764332 456788889888777544
No 35
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.99 E-value=19 Score=30.67 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHH-----------------HHHHHHHhcCCCCCCccEEEeeCCCCCCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALG-----------------EAIAEALKLGLVASREELFITTKLWCSDA 102 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG-----------------~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 102 (263)
.+.++..++.++|-+.||.||-|.....+-..+- ..|+.. +. ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~-A~----tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYI-AK----TGKPVILSTGMS---- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHH-HT----T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHH-HH----hCCcEEEECCCC----
Confidence 6789999999999999999998776432211110 112221 11 344466666553
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
+.+.+.++++...+.- .-++.++|+...+.. | .+ +--++.|..|++.=- --||.|.|+...
T Consensus 124 tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~------~--~e-------~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 124 TLEEIERAVEVLREAG---NEDLVLLHCVSSYPT------P--PE-------DVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -HHHHHHHHHHHHHHC---T--EEEEEE-SSSS----------GG-------G--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCC------C--hH-------HcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 3366766666654443 369999999865421 1 11 223456666664333 578999998643
Q ss_pred H
Q 024751 183 I 183 (263)
Q Consensus 183 l 183 (263)
.
T Consensus 185 ~ 185 (241)
T PF03102_consen 185 E 185 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=76.33 E-value=48 Score=28.32 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCCH--HHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGTE--RALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse--~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 118 (263)
++++..+.++.+++.|++.|-.--.-..+ ...=+++++. -.+++.|...... .++.+...+-+ +.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~-------~g~~~~l~vDan~-~~~~~~a~~~~-~~l~~~ 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA-------VGDDAELRVDANR-GWTPKQAIRAL-RALEDL 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh-------cCCCCEEEEeCCC-CcCHHHHHHHH-HHHHhc
Confidence 45666777788888898887643211112 1222344443 2334455544432 23333333222 233333
Q ss_pred CCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeee
Q 024751 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVN 197 (263)
Q Consensus 119 g~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (263)
++.++..|.. ..-++.+.++++.-.+. ..|=+-++...+.++++...++ ++
T Consensus 156 -----~i~~iEeP~~---------------------~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d--~v 207 (265)
T cd03315 156 -----GLDYVEQPLP---------------------ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAAD--AV 207 (265)
T ss_pred -----CCCEEECCCC---------------------cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCC--EE
Confidence 4455565522 11245677777665554 4444567888899988876655 66
Q ss_pred ccccCCCC---CcHHHHHHHHhCCceEEEccCCCC
Q 024751 198 QVEMNPAW---QQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 198 q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
|+..+..- .-.++...|+++|+.++..+.+.+
T Consensus 208 ~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s 242 (265)
T cd03315 208 NIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIES 242 (265)
T ss_pred EEecccccCHHHHHHHHHHHHHcCCcEEecCccch
Confidence 66655432 236799999999999999876654
No 37
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=76.19 E-value=65 Score=29.77 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=64.3
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC-CCcccEEEeecCCCCCCCccccCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
.||.++.+-++|++..+.. +.+-++|.+-..+.-. -+++..-+++.-++.. ...+.++.++.|......
T Consensus 62 V~Gg~~~L~~~i~~~~~~~---~p~~I~v~~tC~~~li-GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~------ 131 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY---KPDVIGVLTTCLTETI-GDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSH------ 131 (428)
T ss_pred eECcHHHHHHHHHHHHHhc---CCCEEEEECCcchhhc-CCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcH------
Confidence 4788899999999875442 4556777776643211 1333333333222211 013567777777543210
Q ss_pred CCccccccCCHHHHHHHHHHH-------HHcCCccEEEecCC---CHHHHHHHHHhCCCCCeee
Q 024751 144 IPEEDLVSLDYNGVWEAMEEC-------QRHGLTKSIGVSNF---SPKKIETILAFATIPPTVN 197 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~~ 197 (263)
..-...++++|-+. ++.++|.-||-++. +.+.+.++++..++++...
T Consensus 132 -------~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 132 -------ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred -------HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 00133344444332 24566888876654 4688999999888775543
No 38
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=75.91 E-value=59 Score=29.83 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC-------CHHHHHHHHHHHHhcCCCCCCccEEEeeCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG-------TERALGEAIAEALKLGLVASREELFITTKL 97 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------se~~lG~al~~~~~~~~~~~R~~~~I~tK~ 97 (263)
.+..++.+++..|++.|- ...|+ +.+.+.+.+..-.. +.+ ..+++||++-.
T Consensus 78 ~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~-~kl-~a~DV~ltsGC 135 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLP-NKL-TADDVVLTSGC 135 (447)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCC-Ccc-CcCceEEeccc
Confidence 467889999999999983 34565 35556666543222 223 78899998654
No 39
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=75.53 E-value=25 Score=33.27 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCcEE--eCCCCc---C-------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC-------------
Q 024751 46 KSAVLESIKLGYRHF--DTASLY---G-------TERALGEAIAEALKLGLVASREELFITTKLWCS------------- 100 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~--DtA~~Y---g-------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~------------- 100 (263)
-+-.+.....|.+.+ =||.+| | +-+.+..+-++++... -+-++||++-++.-
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~---L~Gk~~lTaGLGGMgGAQplA~~m~g~ 181 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD---LAGKLFLTAGLGGMGGAQPLAATMAGG 181 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS----TT-EEEEE--STTCCHHHHHHHHTT-
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC---CcceEEEEecccccccchHHHHHhcCc
Confidence 345677778888776 356554 2 4566677777776533 47789999988532
Q ss_pred -----CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEe
Q 024751 101 -----DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV 175 (263)
Q Consensus 101 -----~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 175 (263)
+.+++.++ +|+.+.|+|.+.- +.+++++-.++.+++|+...||+
T Consensus 182 v~l~vEvd~~ri~-------kR~~~g~ld~~~~------------------------~ldea~~~~~ea~~~~~~~SIg~ 230 (546)
T PF01175_consen 182 VGLIVEVDPSRIE-------KRLEQGYLDEVTD------------------------DLDEALARAKEARAKKEPLSIGL 230 (546)
T ss_dssp EEEEEES-HHHHH-------HHHHTTSSSEEES------------------------SHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEECHHHHH-------HHHhCCCeeEEcC------------------------CHHHHHHHHHHhhccCCeeEEEE
Confidence 33444444 4555678887542 28999999999999999999999
Q ss_pred cCCCHHHHHHHHHhCC-CCCeeeccccC
Q 024751 176 SNFSPKKIETILAFAT-IPPTVNQVEMN 202 (263)
Q Consensus 176 s~~~~~~l~~~~~~~~-~~~~~~q~~~~ 202 (263)
-..-.+.++++++..- ++...-|...|
T Consensus 231 ~GN~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 231 LGNAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp ES-HHHHHHHHHHTT---SEE---SSTT
T ss_pred eccHHHHHHHHHHcCCCCCcccCCCccc
Confidence 9988899999988743 56666788775
No 40
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=75.05 E-value=62 Score=28.93 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcC---------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYG---------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPAL 111 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~ 111 (263)
++++..+.++.+++.|++.|=.--..+ .....=+++++.+ .+++-|..-.. ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~-------g~~~~l~vDan-~~~~~~~A~--- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAV-------GYDVDLMLDCY-MSWNLNYAI--- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHh-------CCCCcEEEECC-CCCCHHHHH---
Confidence 567677788888899999774321111 1111223344331 22333333332 223343332
Q ss_pred HHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhC
Q 024751 112 KKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFA 190 (263)
Q Consensus 112 ~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~ 190 (263)
+.+++|. .+++.++..|.+ .+-++.+.+|++...|. +.|=+.++...+.++++..
T Consensus 189 -~~~~~l~--~~~~~~iEeP~~---------------------~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~ 244 (341)
T cd03327 189 -KMARALE--KYELRWIEEPLI---------------------PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR 244 (341)
T ss_pred -HHHHHhh--hcCCccccCCCC---------------------ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC
Confidence 2233332 245666665532 22356778888776666 5666778899999999876
Q ss_pred CCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEcc
Q 024751 191 TIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 191 ~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~s 225 (263)
.++ ++|....-. ..-.++.+.|+++|+.++.++
T Consensus 245 a~d--~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 245 AVD--ILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CCC--EEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 544 777665543 223689999999999988764
No 41
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=74.00 E-value=20 Score=32.84 Aligned_cols=100 Identities=26% Similarity=0.259 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHcCCc-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEee--------CC--CCCCCChhHHH
Q 024751 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITT--------KL--WCSDAHRDLVV 108 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~t--------K~--~~~~~~~~~i~ 108 (263)
.+.++=.+-++.|++.|-- ..|-+ ..|.-..+-+.+-+. ..+-|-| +. ...+.+++.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~ 143 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDA---------VPVPVGTVPIYQAAEKVHGAVEDMDEDDMF 143 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 4555556678999999975 55655 344333333332211 0111111 00 12356777777
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCC
Q 024751 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS 179 (263)
Q Consensus 109 ~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 179 (263)
+.+++..+ +-+|.+.+|.. -..+.++.+++.|++ .||-+-.
T Consensus 144 ~~ie~qa~----dGVDfmTiH~G------------------------i~~~~~~~~~~~~R~--~giVSRG 184 (423)
T TIGR00190 144 RAIEKQAK----DGVDFMTIHAG------------------------VLLEYVERLKRSGRI--TGIVSRG 184 (423)
T ss_pred HHHHHHHH----hCCCEEEEccc------------------------hhHHHHHHHHhCCCc--cCeecCc
Confidence 77777655 45899999965 245688889988854 5655443
No 42
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=73.99 E-value=72 Score=29.22 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=77.1
Q ss_pred hHHHHHHHHHH-----------HHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHH-cCCccE
Q 024751 105 DLVVPALKKSL-----------KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR-HGLTKS 172 (263)
Q Consensus 105 ~~i~~~~~~sL-----------~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~ir~ 172 (263)
+.+++.++... +.+| +|++.+|.-.....+ ...+.++..+..++..+ .+.=--
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~------------~d~~~~e~a~~vk~V~~av~vPLI 192 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKL------------DDKSPSEAAKVLEDVLQAVDVPIV 192 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccc------------cccCHHHHHHHHHHHHHhCCCCEE
Confidence 55555555544 4555 799999975332110 11224555666665433 222223
Q ss_pred EEec---CCCHHHHHHHHHhCCC-CCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHH
Q 024751 173 IGVS---NFSPKKIETILAFATI-PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQI 248 (263)
Q Consensus 173 iGvs---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~i 248 (263)
|+=| ..+++.+++.++.+.- +|.++-.+... .-..+.+.|+++|..+++++|..- +.+ ..+...
T Consensus 193 L~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di-n~a---------k~Ln~k 260 (389)
T TIGR00381 193 IGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI-NMQ---------KTLNRY 260 (389)
T ss_pred EeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH-HHH---------HHHHHH
Confidence 3333 5689999999998763 67766444321 225799999999999999999874 322 234444
Q ss_pred HHHhCCCchhhc
Q 024751 249 AALQQGETEREL 260 (263)
Q Consensus 249 a~~~~~t~~~~~ 260 (263)
..++|..++.++
T Consensus 261 L~~~Gv~~eDIV 272 (389)
T TIGR00381 261 LLKRGLMPRDIV 272 (389)
T ss_pred HHHcCCCHHHEE
Confidence 457777765543
No 43
>PRK13796 GTPase YqeH; Provisional
Probab=73.99 E-value=69 Score=29.02 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHcC---CcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCC--CCCChhHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLG---YRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC--SDAHRDLVVPALKKS 114 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~--~~~~~~~i~~~~~~s 114 (263)
.+.++..++++..-+.- +-.+|..+.-++. -..|++.. + .+.-++|.+|.-. .....+.+.+-++..
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~---~~~L~~~~--~---~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW---IPGLHRFV--G---NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCch---hHHHHHHh--C---CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 45666666666666544 4567876655431 11233221 1 3556889999832 222345555555666
Q ss_pred HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH-HHHH
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI-ETIL 187 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l-~~~~ 187 (263)
.+.+|....|++++..-... .+.+.++.+.++.+.+.+-.+|.+|.....| ..++
T Consensus 126 ~k~~g~~~~~v~~vSAk~g~------------------gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKGH------------------GIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred HHhcCCCcCcEEEEECCCCC------------------CHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHH
Confidence 66777655577777644211 2778888888887788899999999997664 4444
No 44
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=73.75 E-value=36 Score=31.55 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=41.3
Q ss_pred CCCChhHHHHHHHHHHHHhCCCcccEEEe-ecCCCCCCC--ccc-cCCCCccccccCCHHHHHHHH-HHHHHcCCccEEE
Q 024751 100 SDAHRDLVVPALKKSLKTLQIEYVDLYLI-HWPMSAKPS--EKL-RNDIPEEDLVSLDYNGVWEAM-EECQRHGLTKSIG 174 (263)
Q Consensus 100 ~~~~~~~i~~~~~~sL~~Lg~~~iDl~~l-h~p~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l-~~l~~~G~ir~iG 174 (263)
+..+.+.+.+.+++.++ |+.|+|.+|.+ |-|...... .+. ..|..+ ...+.++.. +.|.+.|. +.+|
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d------~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDED------EKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChH------HHHHHHHHHHHHHHHCCC-cEEe
Confidence 45566667666666554 67999999988 444321100 000 011100 122344443 45677787 9999
Q ss_pred ecCCCH
Q 024751 175 VSNFSP 180 (263)
Q Consensus 175 vs~~~~ 180 (263)
+|||..
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999976
No 45
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=73.10 E-value=31 Score=33.93 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE 121 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~ 121 (263)
-+.+.+.++.|-|.|++.+ ..|. |+--+..=|. +-|+-|+.-|..++-..+ -.+.+..+.-...
T Consensus 42 gEIaIRvFRa~tEL~~~tv---AiYs-eqD~~sMHRq--------KADEaY~iGk~l~PV~AY----L~ideii~iak~~ 105 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTV---AIYS-EQDRLSMHRQ--------KADEAYLIGKGLPPVGAY----LAIDEIISIAKKH 105 (1176)
T ss_pred CcchhHHHHHHhhhcceEE---EEEe-ccchhhhhhh--------ccccceecccCCCchhhh----hhHHHHHHHHHHc
Confidence 4668899999999999988 4673 3322333332 577888988986553322 2233333333333
Q ss_pred cccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH---------HHhCCC
Q 024751 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETI---------LAFATI 192 (263)
Q Consensus 122 ~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~---------~~~~~~ 192 (263)
.+|. +| |.... ..+--+--+...+.| |++||=| ++.+..+ .-.+.+
T Consensus 106 ~vda--vH-PGYGF------------------LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agV 160 (1176)
T KOG0369|consen 106 NVDA--VH-PGYGF------------------LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGV 160 (1176)
T ss_pred CCCe--ec-CCccc------------------cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCC
Confidence 3454 34 21111 111122333445555 7899987 3333322 222333
Q ss_pred CCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCC
Q 024751 193 PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVG 231 (263)
Q Consensus 193 ~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G 231 (263)
+ ++.---.|...-.+..+||+++|.+||.-..+|++|
T Consensus 161 p--vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 161 P--VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred C--ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 3 232223344445789999999999999999998744
No 46
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.83 E-value=80 Score=29.23 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCH--HHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTE--RALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse--~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
.++++..+..+.+++.|++.|=.--.-..+ ...=+++|+. -.+++.|..-.. ..++++...+. +++
T Consensus 195 ~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~-------vG~~~~L~vDaN-~~w~~~~A~~~----~~~ 262 (415)
T cd03324 195 YSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV-------IGPDNKLMIDAN-QRWDVPEAIEW----VKQ 262 (415)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh-------cCCCCeEEEECC-CCCCHHHHHHH----HHH
Confidence 356667777888889999987432111111 1222344443 233444444442 22344443322 233
Q ss_pred hCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC----CccEEEecCCCHHHHHHHHHhCCCC
Q 024751 118 LQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG----LTKSIGVSNFSPKKIETILAFATIP 193 (263)
Q Consensus 118 Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~ 193 (263)
|. .+++.++..|.. .+-++.+.+|++.. .=-+.|=+.++...+.++++...++
T Consensus 263 L~--~~~l~~iEEP~~---------------------~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~d 319 (415)
T cd03324 263 LA--EFKPWWIEEPTS---------------------PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAID 319 (415)
T ss_pred hh--ccCCCEEECCCC---------------------CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCC
Confidence 32 346667776632 12345666676653 2224455677888999998876555
Q ss_pred CeeeccccCCCC---CcHHHHHHHHhCCceEEEcc
Q 024751 194 PTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 194 ~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~s 225 (263)
++|....-.- .-.++...|+.+|+.+..++
T Consensus 320 --il~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 320 --VVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred --EEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 7776665432 33689999999999998874
No 47
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=72.55 E-value=58 Score=29.11 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCH----------------HHHH-HHHHHHHhcCCCCCCccEEEeeCCCCCCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTE----------------RALG-EAIAEALKLGLVASREELFITTKLWCSDA 102 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse----------------~~lG-~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 102 (263)
++.+...++.++|-+.|+-+|-|--.+.+- +..- ..|+ +++. ..+.+.++|-+...
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik-~iA~----~~kPiIlSTGma~~-- 159 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIK-YIAK----KGKPIILSTGMATI-- 159 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHH-HHHh----cCCCEEEEcccccH--
Confidence 788889999999999999999665544311 1111 1111 1121 23467777766432
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
+.+.++++..++. |. .|+.++|+.+.+.. +-+ +.-+++|..|.+.= ---||+|.|+...
T Consensus 160 --~ei~~av~~~r~~-g~--~~i~LLhC~s~YPa--------p~e-------d~NL~~i~~l~~~F-n~~vGlSDHT~g~ 218 (347)
T COG2089 160 --EEIEEAVAILREN-GN--PDIALLHCTSAYPA--------PFE-------DVNLKAIPKLAEAF-NAIVGLSDHTLGI 218 (347)
T ss_pred --HHHHHHHHHHHhc-CC--CCeEEEEecCCCCC--------CHH-------HhhHHHHHHHHHHh-CCccccccCccch
Confidence 5666666654443 33 49999998764421 111 22344555554443 4469999999776
Q ss_pred HHHHHHh
Q 024751 183 IETILAF 189 (263)
Q Consensus 183 l~~~~~~ 189 (263)
+..+...
T Consensus 219 ~a~l~Av 225 (347)
T COG2089 219 LAPLAAV 225 (347)
T ss_pred hHHHHHH
Confidence 5555443
No 48
>PLN00191 enolase
Probab=71.63 E-value=91 Score=29.35 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEE-ec-CCCH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIG-VS-NFSP 180 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG-vs-~~~~ 180 (263)
+++.+.+-++..++ ..++.++-.|.. .+-|+.+.+|.+..++.-+| =+ ..++
T Consensus 296 s~~e~i~~~~~L~~-----~y~I~~IEDPl~---------------------~~D~eg~~~Lt~~~~ipIvgDE~~vtn~ 349 (457)
T PLN00191 296 SGDELIDLYKEFVS-----DYPIVSIEDPFD---------------------QDDWEHWAKLTSLEDVQIVGDDLLVTNP 349 (457)
T ss_pred CHHHHHHHHHHHhh-----cCCcEEEECCCC---------------------cccHHHHHHHHccCCCcEEccCcccCCH
Confidence 44444444444332 346778887732 23477888888887777666 22 3668
Q ss_pred HHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEc
Q 024751 181 KKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 181 ~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~ 224 (263)
+.+.++++....+ ++++..+-.- ...++++.|+++|+.++.-
T Consensus 350 ~~l~~~I~~~aad--~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 350 KRVAKAIQEKACN--ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred HHHHHHHHhCCCC--EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 8899998876544 5555554332 2367999999999999774
No 49
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=70.95 E-value=76 Score=28.16 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~ 120 (263)
++++..+.+..+.+.|++.|=.--.-..+...=+++++.+ + ++.|..-.. ..++++... . ++.|.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~------~--~~~l~vDaN-~~~~~~~a~-~----~~~l~- 196 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRF------P--QIPLVIDAN-ESYDLQDFP-R----LKELD- 196 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhC------C--CCcEEEECC-CCCCHHHHH-H----HHHHh-
Confidence 4566777788888899987722110012223334455431 2 233333332 223444331 1 23332
Q ss_pred CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeecc
Q 024751 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQV 199 (263)
Q Consensus 121 ~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~ 199 (263)
..++.++..|.. .+-++.+.+|++.-.+. ..|=|.++...+..+++...++ ++|+
T Consensus 197 -~~~~~~iEeP~~---------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--vi~~ 252 (324)
T TIGR01928 197 -RYQLLYIEEPFK---------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK--VINI 252 (324)
T ss_pred -hCCCcEEECCCC---------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC--EEEe
Confidence 246667776631 33467788888776554 5677788999999998876655 6666
Q ss_pred ccCCCC---CcHHHHHHHHhCCceEEEccCCCC
Q 024751 200 EMNPAW---QQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 200 ~~~~~~---~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
...-+- .-.++...|+++|+.++..+-+.+
T Consensus 253 d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 253 KPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred CcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 654432 235899999999999998766654
No 50
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=70.49 E-value=96 Score=29.15 Aligned_cols=116 Identities=18% Similarity=0.070 Sum_probs=64.7
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCC-CccEEEeeCCCCCCCChhHHHHHHHHHHHHhC---CC--cccEEEeecCCCCCCC
Q 024751 64 SLYGTERALGEAIAEALKLGLVAS-REELFITTKLWCSDAHRDLVVPALKKSLKTLQ---IE--YVDLYLIHWPMSAKPS 137 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~-R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg---~~--~iDl~~lh~p~~~~~~ 137 (263)
-.||.++.+-++|++..+.. + .+-++|.|-....-. -+++...+++.-++++ .. .+.++.+|.|......
T Consensus 72 ~VfGg~~~L~~ai~~~~~~~---~~p~~i~v~ttc~~eii-GDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~ 147 (461)
T TIGR02931 72 AVFGALDRVEEAVDVLLTRY---PDVKVVPIITTCSTEII-GDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSM 147 (461)
T ss_pred eEECcHHHHHHHHHHHHHhc---CCCCEEEEECCchHHhh-hcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcH
Confidence 35788888999998865432 2 344667666533211 1445555555444442 11 3578899987553210
Q ss_pred ccccCCCCccccccCCHHHHHHHHHH-HH----HcCCccEEEecC--CCHHHHHHHHHhCCCCCee
Q 024751 138 EKLRNDIPEEDLVSLDYNGVWEAMEE-CQ----RHGLTKSIGVSN--FSPKKIETILAFATIPPTV 196 (263)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~-l~----~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~~ 196 (263)
..-...+++++-+ +. ..++|.-||-.+ -+.+.+.++++..++++.+
T Consensus 148 -------------~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~ 200 (461)
T TIGR02931 148 -------------ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANV 200 (461)
T ss_pred -------------HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEE
Confidence 0012333433332 22 246788888543 3567788999988877543
No 51
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=70.08 E-value=92 Score=29.05 Aligned_cols=163 Identities=17% Similarity=0.068 Sum_probs=89.5
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCC-ccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASR-EELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
.||.++.+-++|++..+.. ++ +-++|.+-.... .--+++..-+++.-++.+ +.++.+|.|......
T Consensus 98 V~Gg~~~L~~aI~~~~~~~---~p~~~I~V~~tC~~~-liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~------ 164 (443)
T TIGR01862 98 VFGGEKKLKKLIHEAFTEF---PLIKAISVYATCPTG-LIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVS------ 164 (443)
T ss_pred eeCcHHHHHHHHHHHHHhC---CccceEEEECCChHH-HhccCHHHHHHHHHHhcC---CCEEEEecCCccCCc------
Confidence 4788889999998875543 44 667777776432 112344444444434444 689999987543210
Q ss_pred CCccccccCCHHHHHHH-HHHHH--------HcCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccCCC--------
Q 024751 144 IPEEDLVSLDYNGVWEA-MEECQ--------RHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMNPA-------- 204 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~-l~~l~--------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~~~-------- 204 (263)
...-...+.++ ++.+. +.+.|.-||-.++ +.+.+.++++..++++...-.....+
T Consensus 165 ------~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~ 238 (443)
T TIGR01862 165 ------QSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHK 238 (443)
T ss_pred ------cchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccc
Confidence 00012333333 23343 2567888885554 35678999998887764322221111
Q ss_pred -------CCc--HHHHHHHH-hCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 205 -------WQQ--RKLVEFCK-SKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 205 -------~~~--~~~i~~~~-~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
... ....++.+ +.|++++...|+|- - -.+..+++|++..|+.
T Consensus 239 A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~---~------~t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 239 AKLNLVHCARSANYIANELEERYGIPWMKIDFFGF---T------YTAESLRAIAAFFGIE 290 (443)
T ss_pred CCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCH---H------HHHHHHHHHHHHhCCc
Confidence 011 12344444 55999998877532 1 1134566666666643
No 52
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=69.94 E-value=1e+02 Score=29.36 Aligned_cols=170 Identities=12% Similarity=0.038 Sum_probs=87.0
Q ss_pred EEeCCCC-cCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC--CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCC
Q 024751 59 HFDTASL-YGTERALGEAIAEALKLGLVASREELFITTKLWCS--DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAK 135 (263)
Q Consensus 59 ~~DtA~~-Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~--~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~ 135 (263)
++|.... +|+++.+-++|++..+.- +.+-++|.+-+.+. .-|.+.+.+.++ +.+ -++++.+|.|....
T Consensus 59 ~~e~~vv~~Gg~~kL~~~I~~~~~~~---~P~~I~V~tTC~~eiIGDDi~~v~~~~~---~~~---~~pVi~v~t~~f~g 129 (513)
T CHL00076 59 IVDRHVLARGSQEKVVDNITRKDKEE---RPDLIVLTPTCTSSILQEDLQNFVDRAS---IES---DSDVILADVNHYRV 129 (513)
T ss_pred cchhhhhccchHHHHHHHHHHHHHhc---CCCEEEECCCCchhhhhcCHHHHHHHhh---ccc---CCCEEEeCCCCCcc
Confidence 3343333 467777777777653322 45666777666432 223344433332 223 36899999884432
Q ss_pred CCccccCCCCccccccCCHHHHHHHHHH-----------HHHcCCccEEEecC------CCHHHHHHHHHhCCCCCeeec
Q 024751 136 PSEKLRNDIPEEDLVSLDYNGVWEAMEE-----------CQRHGLTKSIGVSN------FSPKKIETILAFATIPPTVNQ 198 (263)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------l~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~~~q 198 (263)
.. .......+..+++.+.. -...++|.-||.++ .+...++++++..++++..+-
T Consensus 130 ~~---------~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~ 200 (513)
T CHL00076 130 NE---------LQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQII 200 (513)
T ss_pred cH---------HHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEE
Confidence 11 00000012222222211 01346788998774 356778999998776643221
Q ss_pred c-ccC-------------CCC-Cc--HHHHHHHH-hCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 199 V-EMN-------------PAW-QQ--RKLVEFCK-SKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 199 ~-~~~-------------~~~-~~--~~~i~~~~-~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
- ..+ +.. +. ..+.++.+ +.|++++...|+|- . -.+..|+++++..|..
T Consensus 201 ~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi-~--------~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 201 PEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGI-V--------DTAECIRQIQKILNKL 266 (513)
T ss_pred CCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCH-H--------HHHHHHHHHHHHhCCC
Confidence 1 111 111 11 23455554 56999888788864 1 1234566666666644
No 53
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.12 E-value=87 Score=28.12 Aligned_cols=149 Identities=16% Similarity=0.185 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCc-----C------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLY-----G------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVP 109 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Y-----g------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 109 (263)
++++..+.+..+.+.|++.|=.--.. . .+...=+++++. -..++.|..-.. ..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~-------~g~~~~l~vDaN-~~~~~~~--- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA-------VGPDIDIGVDFH-GRVSKPM--- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh-------hCCCCEEEEECC-CCCCHHH---
Confidence 45666677777888999877543211 0 122223344443 123444444332 2233333
Q ss_pred HHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHH
Q 024751 110 ALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILA 188 (263)
Q Consensus 110 ~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~ 188 (263)
..+.++.|. ..++.++..|.. .+-++.+.+|++..-+. +.|=|.++..++..+++
T Consensus 192 -A~~~~~~l~--~~~i~~iEeP~~---------------------~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~ 247 (352)
T cd03325 192 -AKDLAKELE--PYRLLFIEEPVL---------------------PENVEALAEIAARTTIPIATGERLFSRWDFKELLE 247 (352)
T ss_pred -HHHHHHhcc--ccCCcEEECCCC---------------------ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHH
Confidence 223333342 345666766632 12367888888776555 55667788999999988
Q ss_pred hCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEccC
Q 024751 189 FATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 189 ~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~sp 226 (263)
...++ ++|.....+ ..-.++.+.|+++|+.++..+.
T Consensus 248 ~~~~d--~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~ 286 (352)
T cd03325 248 DGAVD--IIQPDISHAGGITELKKIAAMAEAYDVALAPHCP 286 (352)
T ss_pred hCCCC--EEecCccccCCHHHHHHHHHHHHHcCCcEeccCC
Confidence 76555 677665433 2236899999999999997763
No 54
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=67.92 E-value=37 Score=31.34 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHcCCc-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEee------------C-CCCCCCChh
Q 024751 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITT------------K-LWCSDAHRD 105 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~t------------K-~~~~~~~~~ 105 (263)
.+.++=.+-++.|++.|-. ..|-+. .|.-..+-+.+-+. ..+-|-| | -...+.+++
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-ggdl~~iR~~il~~---------s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d 143 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLST-GGDLDEIRRAIIEA---------SPVPVGTVPIYQAAVEAARKYGSVVDMTED 143 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---------CCCCCcChhHHHHHHHHHhcCCChhhCCHH
Confidence 5556556678999999975 556553 33322222222111 0000000 0 012356777
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 185 (263)
.+.+.+++-.+ +-+|.+.+|.. -..+.++.+++.|++ .||-+-.-..+..
T Consensus 144 ~~~~~ie~qa~----~GVDfmTiHcG------------------------i~~~~~~~~~~~~R~--~giVSRGGs~~~~ 193 (431)
T PRK13352 144 DLFDVIEKQAK----DGVDFMTIHCG------------------------VTRETLERLKKSGRI--MGIVSRGGSFLAA 193 (431)
T ss_pred HHHHHHHHHHH----hCCCEEEEccc------------------------hhHHHHHHHHhcCCc--cCeecCCHHHHHH
Confidence 78777777655 45899999975 234688889888854 6665554444433
Q ss_pred H
Q 024751 186 I 186 (263)
Q Consensus 186 ~ 186 (263)
+
T Consensus 194 W 194 (431)
T PRK13352 194 W 194 (431)
T ss_pred H
Confidence 3
No 55
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=66.54 E-value=1.2e+02 Score=28.94 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCC
Q 024751 66 YGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIP 145 (263)
Q Consensus 66 Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~ 145 (263)
+|+++.+-++|++..+.. +.+-++|.+-..+ +-+-..++...+.++. .++++.++.|......
T Consensus 67 ~G~~ekL~~aI~~~~~~~---~P~~I~V~sTC~s-----eiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~-------- 129 (519)
T PRK02910 67 RGTAELLKDTLRRADERF---QPDLIVVGPSCTA-----ELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKE-------- 129 (519)
T ss_pred CChHHHHHHHHHHHHHhc---CCCEEEEeCCcHH-----HHhccCHHHHHHHhCC-CCCEEEEecCCccccc--------
Confidence 567778888888764332 3445677666532 2222223333334443 3578888888543211
Q ss_pred ccccccCCHHHHHHHHHH--------HHHcCCccEEEecC------CCHHHHHHHHHhCCCCCeeeccc-cC--------
Q 024751 146 EEDLVSLDYNGVWEAMEE--------CQRHGLTKSIGVSN------FSPKKIETILAFATIPPTVNQVE-MN-------- 202 (263)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~--------l~~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~~~q~~-~~-------- 202 (263)
.......+...++.+.. -.+.+.|.-||.++ .+...+.++++..++++.++--. -+
T Consensus 130 -~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~ 208 (519)
T PRK02910 130 -NWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLP 208 (519)
T ss_pred -chHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcc
Confidence 00001111222222221 01235688888864 24567888898887765443211 11
Q ss_pred -----CCCCc---HHHHHHHH-hCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCch
Q 024751 203 -----PAWQQ---RKLVEFCK-SKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETE 257 (263)
Q Consensus 203 -----~~~~~---~~~i~~~~-~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~ 257 (263)
+...+ ..+.++.+ +.|++++...|+|-. -.+..+++|++..|+.++
T Consensus 209 ~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~---------~T~~fL~~la~~~g~~~~ 263 (519)
T PRK02910 209 AAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVG---------ATARFIREVAELLNLDGA 263 (519)
T ss_pred cCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHH---------HHHHHHHHHHHHhCCChh
Confidence 11011 22444443 568998887887631 123456777777776544
No 56
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.88 E-value=34 Score=28.98 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC-CccEEEecCCCHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPK 181 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~ 181 (263)
+.+...+-+ ..|..+|++++.+-..-.+... | .....++.++.+++.+ .++...++....+
T Consensus 17 s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~--------p---------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 17 STEDKLEIA-EALDEAGVDSIEVGSGASPKAV--------P---------QMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeccCcCcccc--------c---------cCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 334444444 4477889888777766543211 1 0244577888888888 5776677765566
Q ss_pred HHHHHHHhCCCCCeeeccccCCC----------------CCcHHHHHHHHhCCceEEEcc
Q 024751 182 KIETILAFATIPPTVNQVEMNPA----------------WQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~----------------~~~~~~i~~~~~~gi~v~a~s 225 (263)
.++.+.+.. ++ .+++.+... ..-.+.+++++++|+.+...-
T Consensus 79 ~i~~a~~~g-~~--~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 79 GIERALEAG-VD--EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hHHHHHhCC-cC--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 677776643 33 333333322 111357888999998876655
No 57
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=64.45 E-value=94 Score=26.80 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI 183 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 183 (263)
.+.+.+..++. ..-|.+.||+-.=-.+ ....+.....++.+++.-. .-|-|=+++++.+
T Consensus 24 ~~~i~~~A~~~-~~~GAdiIDVg~~~~~-------------------~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~ 82 (261)
T PRK07535 24 AAFIQKLALKQ-AEAGADYLDVNAGTAV-------------------EEEPETMEWLVETVQEVVD-VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHHHH-HHCCCCEEEECCCCCc-------------------hhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHH
Confidence 34554444443 2558889998643111 0013344455555554422 2478889999999
Q ss_pred HHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCC-CCCcHHHHHHHHHhCCCchhhc
Q 024751 184 ETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ-VMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 184 ~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~-~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
++.++.+.-.+.+|-+.... .....+++.++++|+.++.+---. +|....... +-.-..+.+.|.++|+++++++
T Consensus 83 eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~~-~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii 158 (261)
T PRK07535 83 EAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMDD-TGIPKDAEDRLAVAKELVEKADEYGIPPEDIY 158 (261)
T ss_pred HHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecCC-CCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence 99999854345566433211 123578999999999999764322 243211100 1111345667788898887765
No 58
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=63.31 E-value=28 Score=29.61 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=43.7
Q ss_pred CccccCeeceecccc---C----CChHHHHHHHHH----HHHcCCcEEeCCCC--c-C--C---HHHHHHHHHHHHhcCC
Q 024751 24 GHRKMPVIGLGSAVD---N----IDESAMKSAVLE----SIKLGYRHFDTASL--Y-G--T---ERALGEAIAEALKLGL 84 (263)
Q Consensus 24 ~g~~v~~iglG~~~~---~----~~~~~~~~~l~~----A~~~Gi~~~DtA~~--Y-g--s---e~~lG~al~~~~~~~~ 84 (263)
||+.+|-+||.+.+- | ...+++.+++.. |.+.|||.|--|.- | . + .+.+-+.++..+.-.
T Consensus 66 tgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA- 144 (287)
T COG3623 66 TGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA- 144 (287)
T ss_pred hCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH-
Confidence 569999999988752 2 223445555554 55779999988742 2 2 3 344444444432212
Q ss_pred CCCCccEEEeeCCC
Q 024751 85 VASREELFITTKLW 98 (263)
Q Consensus 85 ~~~R~~~~I~tK~~ 98 (263)
.+.+|.++.-+.
T Consensus 145 --~~aqV~lAvEiM 156 (287)
T COG3623 145 --ARAQVMLAVEIM 156 (287)
T ss_pred --HhhccEEEeeec
Confidence 577888888774
No 59
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=63.17 E-value=52 Score=27.23 Aligned_cols=69 Identities=9% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCC
Q 024751 154 YNGVWEAMEECQR--HGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 154 ~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
.+.+...++.+++ .+. -|.|=+++++.++.+++. +.++..+-..+. ...++++.++++|..++++---+
T Consensus 56 ~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~---~~~~~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 56 MERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE---DDPEMLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp HHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS---SSTTHHHHHHHHTSEEEEESESS
T ss_pred HHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc---ccchhhhhhhcCCCEEEEEeccc
Confidence 3445555556554 232 467778999999999998 666555443332 25689999999999999987663
No 60
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=62.81 E-value=53 Score=27.36 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccCCCC
Q 024751 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 158 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
++.+.+|++...+. ..+=|-++...+.++++...++ ++|+..+..- .-.++..+|+++|+.++..+.+.+
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d--~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVD--ILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56777787777665 3345556778887777765554 6666655432 225789999999999999887764
No 61
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=62.61 E-value=17 Score=25.35 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 161 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
+++|++.|++ .+| ..+..+.++......++.--+.++ .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSI-VIG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 4566677754 233 456667777777676666555554 233678889999999987765
No 62
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=62.00 E-value=49 Score=28.96 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETIL 187 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 187 (263)
+..+-+.|.++|+++|++-.++.|..... ..+.++.+..+.+...++...+. .+...++.++
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-----------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~ 89 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSPKWVPQ-----------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAAL 89 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCcccccc-----------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHH
Confidence 44566668999999999875554421111 12235666666554446666665 4788888888
Q ss_pred HhCCCCCeeeccccCCCC------C--------cHHHHHHHHhCCceEE
Q 024751 188 AFATIPPTVNQVEMNPAW------Q--------QRKLVEFCKSKSIIVT 222 (263)
Q Consensus 188 ~~~~~~~~~~q~~~~~~~------~--------~~~~i~~~~~~gi~v~ 222 (263)
+. +++....-+..|..+ . -.+.+++++++|+.+.
T Consensus 90 ~~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 90 AA-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred Hc-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 75 333222223333211 0 1358999999999885
No 63
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=61.93 E-value=1e+02 Score=26.45 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEe-ecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLI-HWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~l-h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
.+.+.+..++.+ .-|.+.||+=.. .+|...... + ....+.....++.+++.-.+- |.|=+++++.
T Consensus 23 ~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~-----~-------~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v 88 (257)
T cd00739 23 LDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVS-----V-------EEELERVIPVLEALRGELDVL-ISVDTFRAEV 88 (257)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCC-----H-------HHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHH
Confidence 344444433332 448889998643 234321110 0 011233333456666553332 7788999999
Q ss_pred HHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCC------CCC-----cHHHHHHHHH
Q 024751 183 IETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQ------VMN-----NEALKQIAAL 251 (263)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~------~l~-----~~~l~~ia~~ 251 (263)
++++++.+ ...+|- .+......++++.++++|..++.+--- |....... ... -....+.|.+
T Consensus 89 ~e~al~~G--~~iINd--isg~~~~~~~~~l~~~~~~~vV~m~~~---g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 89 ARAALEAG--ADIIND--VSGGSDDPAMLEVAAEYGAPLVLMHMR---GTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred HHHHHHhC--CCEEEe--CCCCCCChHHHHHHHHcCCCEEEECCC---CCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999975 334543 333332368999999999999995432 33211000 000 1234567888
Q ss_pred hCCCchhhc
Q 024751 252 QQGETEREL 260 (263)
Q Consensus 252 ~~~t~~~~~ 260 (263)
+|+++++++
T Consensus 162 ~Gi~~~~Ii 170 (257)
T cd00739 162 AGVARNRII 170 (257)
T ss_pred cCCCHHHEE
Confidence 888877664
No 64
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.15 E-value=1.2e+02 Score=27.12 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCc---CCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLY---GTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Y---gse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
++++..+.+..+++.|++.|=.--.. ..+...=+++|+. -.+++.|..-.. ..++++...+. ++.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~-------~g~~~~l~vDaN-~~~~~~~A~~~----~~~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA-------VGDGVGLMVDYN-QSLTVPEAIER----GQA 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh-------hCCCCEEEEeCC-CCcCHHHHHHH----HHH
Confidence 34566667777778888765221111 1222333445543 234555555442 22334433222 222
Q ss_pred hCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCee
Q 024751 118 LQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTV 196 (263)
Q Consensus 118 Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~ 196 (263)
|. .+++.++..|.. ..-++.+.+|++.--|. +.|=+.++...+..+++...++ +
T Consensus 209 l~--~~~i~~iEeP~~---------------------~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d--~ 263 (355)
T cd03321 209 LD--QEGLTWIEEPTL---------------------QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACD--L 263 (355)
T ss_pred HH--cCCCCEEECCCC---------------------CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCC--e
Confidence 32 235666666632 12356777777664432 4556678899999998876554 6
Q ss_pred eccccCCCC---CcHHHHHHHHhCCceEEEcc
Q 024751 197 NQVEMNPAW---QQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 197 ~q~~~~~~~---~~~~~i~~~~~~gi~v~a~s 225 (263)
+|...+-+- .-.++.+.|+.+|+.++.+.
T Consensus 264 i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 264 VMPDLMKIGGVTGWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred EecCHhhhCCHHHHHHHHHHHHHcCCeecccc
Confidence 666655432 22578999999999987544
No 65
>PRK06740 histidinol-phosphatase; Validated
Probab=60.71 E-value=1e+02 Score=27.54 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCcccccc----CCHHHHHHHHHHHHHcCCccEEEecC------C
Q 024751 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVS----LDYNGVWEAMEECQRHGLTKSIGVSN------F 178 (263)
Q Consensus 109 ~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvs~------~ 178 (263)
..++..|+....||+ +.-+|+...+. ...+.....+.. .....-++.+.++.+.|.+..||=-. +
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~----~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~ 230 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWG----FDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNY 230 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcC----CCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCC
Confidence 345556666666766 77779764211 000100011111 11344667788888999888777221 1
Q ss_pred C------HHHHHHHHHh---CCCCCeeecc-ccC-C---CCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCC-cH
Q 024751 179 S------PKKIETILAF---ATIPPTVNQV-EMN-P---AWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMN-NE 243 (263)
Q Consensus 179 ~------~~~l~~~~~~---~~~~~~~~q~-~~~-~---~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~-~~ 243 (263)
. .+.++++++. .++..-+|-. .+. + ..+...+++.|++.|+.++.-|=-.. +..+-. ..
T Consensus 231 ~~~~~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSDAH~------p~~VG~~~~ 304 (331)
T PRK06740 231 RLDENEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSDAHY------PNDLGKYVE 304 (331)
T ss_pred CcchhhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeCCCC------HHHHHhHHH
Confidence 1 1233343332 2333323321 110 1 12335788889999887654332221 111111 13
Q ss_pred HHHHHHHHhCCCc
Q 024751 244 ALKQIAALQQGET 256 (263)
Q Consensus 244 ~l~~ia~~~~~t~ 256 (263)
...++++++|.+.
T Consensus 305 ~a~~~l~~~G~~~ 317 (331)
T PRK06740 305 ENVKTLRNHGVTS 317 (331)
T ss_pred HHHHHHHHcCCcE
Confidence 4567777777654
No 66
>PRK09061 D-glutamate deacylase; Validated
Probab=59.72 E-value=1.4e+02 Score=28.44 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCcEEeCCCCc--C-CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCC-ChhHHHHHHHHHHHHhCC
Q 024751 45 MKSAVLESIKLGYRHFDTASLY--G-TERALGEAIAEALKLGLVASREELFITTKLWCSDA-HRDLVVPALKKSLKTLQI 120 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Y--g-se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~-~~~~i~~~~~~sL~~Lg~ 120 (263)
..++++.|++.|...|-+...| + +...+-+.++.. .+-+..|......... ++.....++++.++....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A-------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~ 243 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA-------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAE 243 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH-------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHH
Confidence 6777888999999999775556 2 555666666655 3445677777754332 222334455555543332
Q ss_pred CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC
Q 024751 121 EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF 178 (263)
Q Consensus 121 ~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 178 (263)
.-.-+.+.|--.... ....+.++.+++.+++|.-=..-++-|
T Consensus 244 ~G~rv~IsHlss~g~----------------~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 244 TGAHMHICHVNSTSL----------------RDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred hCCCEEEEeeccCCc----------------ccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 223477778542211 125777888899999885444444433
No 67
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.57 E-value=1.2e+02 Score=26.35 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEe--------
Q 024751 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGV-------- 175 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGv-------- 175 (263)
..+...+++.-..-+---+-.+.+-+|+ .+.+.+.|..|.+.|- +-.+|+
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP~---------------------~e~s~e~i~~L~~~GaD~iELGvPfSDPvAD 60 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDPD---------------------LETSLEIIKTLVEAGADILELGVPFSDPVAD 60 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCC---------------------HHHHHHHHHHHHhCCCCEEEecCCCCCcCcc
Q ss_pred -------------cCCCHHHHHHHHHhCC---CC-CeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCCCCCCCCCC
Q 024751 176 -------------SNFSPKKIETILAFAT---IP-PTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSSWGT 236 (263)
Q Consensus 176 -------------s~~~~~~l~~~~~~~~---~~-~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~~~G~l~~~ 236 (263)
.+++.+..-++++..+ .+ |.+.+.-||+..+. ...++.|++.|+ . |++..+
T Consensus 61 GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv---------d-GlivpD 130 (265)
T COG0159 61 GPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV---------D-GLLVPD 130 (265)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC---------C-EEEeCC
Q ss_pred CCCCCcHHHHHHHHHhCCCc
Q 024751 237 NQVMNNEALKQIAALQQGET 256 (263)
Q Consensus 237 ~~~l~~~~l~~ia~~~~~t~ 256 (263)
-+......+...|++||..+
T Consensus 131 LP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 131 LPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred CChHHHHHHHHHHHHcCCcE
No 68
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=59.53 E-value=30 Score=29.57 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC------CCChhHHHHHHHH
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCS------DAHRDLVVPALKK 113 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~------~~~~~~i~~~~~~ 113 (263)
.....+.++.+-+.|++.++.++.+- ++...-++++.. ....+.+.+-++.. ..+++.+.+++++
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~-------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~ 155 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA-------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKR 155 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH-------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH-------HHCCCEEeecccCCCchhcccCCHHHHHHHHHH
Confidence 45566778888888999999888776 677777888876 45557888877643 2346777777777
Q ss_pred HHHHhCCCcccEEEeecC
Q 024751 114 SLKTLQIEYVDLYLIHWP 131 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh~p 131 (263)
-|+. | .|.+++..-
T Consensus 156 dLeA-G---A~~ViiEar 169 (244)
T PF02679_consen 156 DLEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHHH-T---ECEEEE--T
T ss_pred HHHC-C---CCEEEEeee
Confidence 7776 5 577888754
No 69
>PRK05414 urocanate hydratase; Provisional
Probab=59.41 E-value=34 Score=32.41 Aligned_cols=121 Identities=20% Similarity=0.173 Sum_probs=85.0
Q ss_pred HHHHHHHcCCcEE--eCCCCc----------CCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC---------------
Q 024751 48 AVLESIKLGYRHF--DTASLY----------GTERALGEAIAEALKLGLVASREELFITTKLWCS--------------- 100 (263)
Q Consensus 48 ~l~~A~~~Gi~~~--DtA~~Y----------gse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~--------------- 100 (263)
-+...-+.|.+.+ =||.+| |+-+.+..+-++++. +- -+-++||++-++.-
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g~--L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-GD--LAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-CC--CceeEEEEecCCccccccHHHHHhcCceE
Confidence 4566667777655 255544 256777777777764 32 37778999888531
Q ss_pred ---CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecC
Q 024751 101 ---DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN 177 (263)
Q Consensus 101 ---~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 177 (263)
+.+++. .-+|+.+.|+|.+.- +++++++-.++.+++|+...||+-.
T Consensus 194 i~vEvd~~r-------i~kR~~~gyld~~~~------------------------~Ldeal~~~~~a~~~~~~~SIg~~G 242 (556)
T PRK05414 194 LAVEVDESR-------IDKRLRTGYLDEKAD------------------------DLDEALALAEEAKAAGEPLSIGLLG 242 (556)
T ss_pred EEEEECHHH-------HHHHHhCCcceeEcC------------------------CHHHHHHHHHHHHHcCCceEEEEec
Confidence 223333 345677788886532 2789999999999999999999999
Q ss_pred CCHHHHHHHHHhCC-CCCeeeccccC
Q 024751 178 FSPKKIETILAFAT-IPPTVNQVEMN 202 (263)
Q Consensus 178 ~~~~~l~~~~~~~~-~~~~~~q~~~~ 202 (263)
.-.+.++++++..- ++...-|...|
T Consensus 243 Naadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 243 NAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred cHHHHHHHHHHcCCCCCccCcCcccc
Confidence 88999999998753 56666787765
No 70
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=58.32 E-value=1.3e+02 Score=27.02 Aligned_cols=120 Identities=21% Similarity=0.218 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcEEe----CCCC-----cC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFD----TASL-----YG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~D----tA~~-----Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...++|+|.+. +... .| +.+.+-++++...+.|+ +.+-+-.=++.+..+.+.+++.++.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~----~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGF----ENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CEEEEEeecCCCCCCHHHHHHHHHH
Confidence 3556666677888772 2211 12 34445556665533332 1122222224456777888888876
Q ss_pred HHHHhCCCcccEEEeec-CCCCCCCccccCCCCccccccCCHHHHH-HHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLIHW-PMSAKPSEKLRNDIPEEDLVSLDYNGVW-EAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.+ .++.+++.++.+.- |...... ..+.. ....+.+ .+.+.|.+.|. ..+++|||..
T Consensus 174 ~~-~l~~~~is~y~L~~~~gT~l~~-~~~~~--------~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 174 AK-ELPINHLSAYSLTIEENTPFFE-KNHKK--------KDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred HH-hcCCCEEEeccceecCCChhHH-hhhcC--------CCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 54 58999998888762 3110000 00000 0122233 34566778896 5799999864
No 71
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=58.30 E-value=35 Score=32.20 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCcEE--eCCCCc----------CCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC--------------
Q 024751 47 SAVLESIKLGYRHF--DTASLY----------GTERALGEAIAEALKLGLVASREELFITTKLWCS-------------- 100 (263)
Q Consensus 47 ~~l~~A~~~Gi~~~--DtA~~Y----------gse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~-------------- 100 (263)
+-+...-+.|.+.+ =||.+| |+-+.+..+-++++... -+-.+||++-++.-
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~---L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGS---LKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCC---CceeEEEEeCCCccccccHHHHHHcCce
Confidence 34566667777655 255443 25677777777776332 37778888888531
Q ss_pred ----CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec
Q 024751 101 ----DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS 176 (263)
Q Consensus 101 ----~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 176 (263)
+.+++.+ -+|+.+.|+|.+.- +++++++-.++.+++|+...||+-
T Consensus 184 ~i~vEvd~~ri-------~kR~~~gyld~~~~------------------------~ldeal~~~~~a~~~~~~~SIg~~ 232 (545)
T TIGR01228 184 SIAVEVDESRI-------DKRLETKYCDEQTD------------------------SLDEALARAEEAKAEGKPISIGLL 232 (545)
T ss_pred EEEEEECHHHH-------HHHHhcCcceeEcC------------------------CHHHHHHHHHHHHHcCCceEEEee
Confidence 2233333 45667788876531 278999999999999999999999
Q ss_pred CCCHHHHHHHHHhC-CCCCeeeccccC
Q 024751 177 NFSPKKIETILAFA-TIPPTVNQVEMN 202 (263)
Q Consensus 177 ~~~~~~l~~~~~~~-~~~~~~~q~~~~ 202 (263)
..-.+.++++++.. .++...-|...|
T Consensus 233 GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 233 GNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred ccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 98899999999864 356666787765
No 72
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=57.93 E-value=67 Score=29.02 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 185 (263)
.-+-.+-+.|.++|+++|++-..-.|... |+ ..+.++..+.+. +...++..++. .+.+.++.
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~v--------Pq------mad~~ev~~~i~---~~~~~~~~~l~-~n~~die~ 129 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWV--------PQ------LADAKDVMAAVR---NLEGARFPVLT-PNLKGFEA 129 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccc--------cc------cccHHHHHHHHH---hccCCceeEEc-CCHHHHHH
Confidence 44556667799999999998755444211 10 112344444443 32335555664 58889999
Q ss_pred HHHhCCCCCeeeccccCCCC--------Cc------HHHHHHHHhCCceEE
Q 024751 186 ILAFATIPPTVNQVEMNPAW--------QQ------RKLVEFCKSKSIIVT 222 (263)
Q Consensus 186 ~~~~~~~~~~~~q~~~~~~~--------~~------~~~i~~~~~~gi~v~ 222 (263)
+++. +.+.+.+-+..|..+ .. .+++++++++|+.+.
T Consensus 130 A~~~-g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 130 AIAA-GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred HHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9875 333222222222211 11 368999999999885
No 73
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=57.80 E-value=1.5e+02 Score=27.11 Aligned_cols=143 Identities=19% Similarity=0.244 Sum_probs=79.8
Q ss_pred eeccccCCChHHHHHHHHHHHHcCC-cEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeC--------CC--CCC
Q 024751 33 LGSAVDNIDESAMKSAVLESIKLGY-RHFDTASLYGTERALGEAIAEALKLGLVASREELFITTK--------LW--CSD 101 (263)
Q Consensus 33 lG~~~~~~~~~~~~~~l~~A~~~Gi-~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK--------~~--~~~ 101 (263)
+|+..-..+-++=.+-++.|.+.|. +..|-+. .|.-..+.+++=+. ..+=|-|= .. ..+
T Consensus 68 iGtS~~~~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~~---------s~vPvGTVPIYqA~~~~~~~~~~ 137 (432)
T COG0422 68 IGTSADTSDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIRN---------SPVPVGTVPIYQALEEVNGKVED 137 (432)
T ss_pred ecCCcccCCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHhc---------CCCCcCCchHHHHHHHHhcchhh
Confidence 3433333566666777899999995 4667663 34444333333221 00101000 00 124
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
.+.+.+...+++..+ +-+|.+.+|.- -.++.+..+++.|++ .|+-+-.-.
T Consensus 138 ~t~d~~~~~v~~qa~----~GVdfmTIHaG------------------------V~~~~~~~~~~~~R~--~giVSRGGs 187 (432)
T COG0422 138 LTEDDFFDTVEKQAE----QGVDFMTIHAG------------------------VLLEYVPRTKRSGRV--TGIVSRGGS 187 (432)
T ss_pred CCHHHHHHHHHHHHH----hCCcEEEeehh------------------------hhHHHHHHHHhcCce--eeeeccchH
Confidence 566666666666554 34799999953 356788899998865 676666555
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCc-HHHHHHHHhCCceEEE
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTA 223 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~a 223 (263)
.+..++-.-. .=||+... .++++.|+++++.+--
T Consensus 188 i~a~Wml~~~--------~ENply~~fd~lleI~k~yDvtlSL 222 (432)
T COG0422 188 IMAAWMLHNH--------KENPLYEHFDELLEIFKEYDVTLSL 222 (432)
T ss_pred HHHHHHHHcC--------CcCchhhhHHHHHHHHHHhCeeeec
Confidence 5554433221 11333332 5677777777776643
No 74
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=57.77 E-value=1.8e+02 Score=27.85 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=67.9
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC-CcccEEEeecCCCCCCCcc
Q 024751 61 DTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI-EYVDLYLIHWPMSAKPSEK 139 (263)
Q Consensus 61 DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~-~~iDl~~lh~p~~~~~~~~ 139 (263)
+.+..||.++-+-++|++..+.. +.+-++|.|-....-. -+++..-+++.-+...+ ..+++..+|.|.....-
T Consensus 119 E~~aVfGG~~~L~e~I~~~~~~y---~P~~I~V~tTC~~evI-GDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~-- 192 (515)
T TIGR01286 119 EDAAVFGGLKNMVDGLQNCYALY---KPKMIAVSTTCMAEVI-GDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSH-- 192 (515)
T ss_pred CCceeeCcHHHHHHHHHHHHHhc---CCCEEEEeCCcHHHHh-hccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccH--
Confidence 33446888888888888765432 4566778877643211 14455555555555443 24689999988653210
Q ss_pred ccCCCCccccccCCHHHHHHHHHH-HH----------HcCCccEEE-ecC--CCHHHHHHHHHhCCCCCee
Q 024751 140 LRNDIPEEDLVSLDYNGVWEAMEE-CQ----------RHGLTKSIG-VSN--FSPKKIETILAFATIPPTV 196 (263)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~-l~----------~~G~ir~iG-vs~--~~~~~l~~~~~~~~~~~~~ 196 (263)
..-...+++++-+ +. ..++|.-|| ... -+.+.|+++++..++++.+
T Consensus 193 -----------~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 193 -----------ITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred -----------HHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEE
Confidence 0002233333332 21 236677774 432 2467899999988877554
No 75
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.50 E-value=1.7e+02 Score=27.40 Aligned_cols=162 Identities=15% Similarity=0.027 Sum_probs=89.0
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
-.||.++.+-++|++..+.. +.+-++|.|-..+.-. .+++..-+++.-++.+ +.++.++.|......
T Consensus 101 vVfGg~~kL~~~I~e~~~~~---~P~~I~V~ttC~~~lI-GdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~------ 167 (456)
T TIGR01283 101 VIFGGEKKLFHAIREIVERY---HPPAVFVYSTCVPGLI-GDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSK------ 167 (456)
T ss_pred eEeCCHHHHHHHHHHHHHhC---CCCEEEEECCChHHHh-cCCHHHHHHHHHHHhC---CCEEEEECCCCccch------
Confidence 35788999999999876553 4666778777643211 1333333333333344 678888877532110
Q ss_pred CCccccccCCHHHHHHHHHHHHH-------------cCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccCCCC---
Q 024751 144 IPEEDLVSLDYNGVWEAMEECQR-------------HGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMNPAW--- 205 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~-------------~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~--- 205 (263)
..-...++++|-++.. .+.|.-||-.+. +.+.+.++++..++++...-....-+.
T Consensus 168 -------~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~ 240 (456)
T TIGR01283 168 -------NLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQ 240 (456)
T ss_pred -------hHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHH
Confidence 0013344444443321 457888885442 456899999988776543222111110
Q ss_pred -----------Cc---HHHHHHH-HhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 206 -----------QQ---RKLVEFC-KSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 206 -----------~~---~~~i~~~-~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
.. ..+.++. ++.|++++..+|+|- - -.+..+++||+.++.
T Consensus 241 ~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~---~------~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 241 TAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGI---E------DTSKALRDIADLFGD 295 (456)
T ss_pred hcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcH---H------HHHHHHHHHHHHhCC
Confidence 11 2344445 456999998666542 0 123456777777664
No 76
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=57.44 E-value=1.7e+02 Score=27.45 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=61.5
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC--CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCcccc
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCS--DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLR 141 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~--~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~ 141 (263)
-.||.++.+-++|++..+.- +.+-++|.|-.-+. ..|.+.+.+.++.-..+ ...+.++.++.|......
T Consensus 72 ~VfGg~~~L~~aI~~~~~~~---~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~g~~---- 142 (455)
T PRK14476 72 TILGGDENVEEAILNICKKA---KPKIIGLCTTGLTETRGDDVAGALKEIRARHPE--LADTPIVYVSTPDFKGAL---- 142 (455)
T ss_pred eEeCCHHHHHHHHHHHHHhh---CCCEEEEeCcchHhhhhccHHHHHHHHHhhccc--cCCCeEEEecCCCCCCcH----
Confidence 35888999999998875432 34567777665321 22223333333222111 113578888887543210
Q ss_pred CCCCccccccCCHHHHHHHHHH-HH--------HcCCccEEEecC---CCHHHHHHHHHhCCCCCe
Q 024751 142 NDIPEEDLVSLDYNGVWEAMEE-CQ--------RHGLTKSIGVSN---FSPKKIETILAFATIPPT 195 (263)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~-l~--------~~G~ir~iGvs~---~~~~~l~~~~~~~~~~~~ 195 (263)
..-...+++++.+ +. +.++|.-||-++ -+.+.+.++++..++++.
T Consensus 143 ---------~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 143 ---------EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred ---------HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 0013334444432 22 345688887443 356788888888887753
No 77
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.65 E-value=1.1e+02 Score=28.01 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=62.5
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHHhCC-C----
Q 024751 125 LYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-------NFSPKKIETILAFAT-I---- 192 (263)
Q Consensus 125 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~---- 192 (263)
.+.||.|+...+. .-.|... ...++++++++.+..++.. |-|-+- |.+.+..+++.+..+ .
T Consensus 231 AiSLHA~~~e~R~--~lmPin~----~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~ 303 (371)
T PRK14461 231 AISLHAPDDALRS--ELMPVNR----RYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPG 303 (371)
T ss_pred EEEeCCCCHHHHH--HhcCccc----CCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCcccc
Confidence 3678998754431 1222221 1247888888888764432 234321 666777777766543 3
Q ss_pred --CCeeeccccCCCCC-----c-----HHHHHHHHhCCceEEEccCCCC
Q 024751 193 --PPTVNQVEMNPAWQ-----Q-----RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 193 --~~~~~q~~~~~~~~-----~-----~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+..+|-++||+... . ..+.+.++++||.+......|.
T Consensus 304 ~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 304 PLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred CCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 56799999998642 1 3467778999999999988874
No 78
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=56.18 E-value=1.3e+02 Score=25.65 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCccEEEecC-CCHHHHHHHHHhCCCCCeeeccccC-CCCCcHHHHHHHHhCCceE
Q 024751 158 WEAMEECQRHGLTKSIGVSN-FSPKKIETILAFATIPPTVNQVEMN-PAWQQRKLVEFCKSKSIIV 221 (263)
Q Consensus 158 ~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~~~~-~~~~~~~~i~~~~~~gi~v 221 (263)
|+.+.++++.-.+.-|.... .+.+.+.++++..+++-++.-.-++ .-..-.++.+.|+++||.+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 34455555554566665554 3567888888876666543321211 1112257889999998864
No 79
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=55.39 E-value=1.1e+02 Score=28.00 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCcEEeCCCCc---------C---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFDTASLY---------G---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Y---------g---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...++|+|.+...--= | +.+.+-++++...+.|+ + .+-+--=++.+..+.+.+++.++.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~--~--~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGI--E--NFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC--C--eEEEEeecCCCCCCHHHHHHHHHH
Confidence 345666667788877433211 1 33444555655433343 1 122222224455677778777776
Q ss_pred HHHHhCCCcccEEEeec-CCCC-----CCCccccCCCCccccccCCHHHHH-HHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLIHW-PMSA-----KPSEKLRNDIPEEDLVSLDYNGVW-EAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh~-p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.+ .|+.+++.++.+.- |... ..+ ....| + .....+.+ .+.+.|.+.|.. .+++|||..
T Consensus 191 ~~-~l~p~~is~y~L~~~pgT~l~~~~~~g-~~~~~--~----~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 191 AI-ALNPTHLSCYDLVLEPGTAFGKQYQPG-KAPLP--S----DETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred HH-cCCCCEEEEecceecCCchhHHHhhcC-CCCCC--C----HHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 55 48889999987762 2110 000 00001 0 00112233 355678889985 689999974
No 80
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=55.37 E-value=1.8e+02 Score=27.77 Aligned_cols=146 Identities=8% Similarity=0.073 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCC
Q 024751 66 YGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIP 145 (263)
Q Consensus 66 Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~ 145 (263)
+|+++.+-++|++..+.. +.+-++|.+-+.+ +-+-+.++...+.++.+.++++.++.|......
T Consensus 67 ~G~~~~L~~aI~~~~~~~---~P~~I~V~sTC~s-----elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~-------- 130 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF---KPDLIVVTPSCTS-----SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKE-------- 130 (511)
T ss_pred cchHHHHHHHHHHHHHhc---CCCEEEEeCCChH-----HHhccCHHHHHHHhccCCCcEEEecCCCcccch--------
Confidence 778888999998775432 3445666665532 222233344444455445889999988543211
Q ss_pred ccccccCCHHHHHHHHHHH-------HHcCCccEEEecCC------CHHHHHHHHHhCCCCCeeeccc-cC---------
Q 024751 146 EEDLVSLDYNGVWEAMEEC-------QRHGLTKSIGVSNF------SPKKIETILAFATIPPTVNQVE-MN--------- 202 (263)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~l-------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~~~q~~-~~--------- 202 (263)
......-+..+++.+..- .+.+.|.-||.++. +...++++++..++.+.++--. -+
T Consensus 131 -~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~ 209 (511)
T TIGR01278 131 -NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPA 209 (511)
T ss_pred -hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhccc
Confidence 000001112222222110 13466888998763 4577888998887765433111 11
Q ss_pred ----CC-CCc--HHHHHHH-HhCCceEEEccCCC
Q 024751 203 ----PA-WQQ--RKLVEFC-KSKSIIVTAFSPLG 228 (263)
Q Consensus 203 ----~~-~~~--~~~i~~~-~~~gi~v~a~spl~ 228 (263)
+. .+. ..+.++. ++.|++++...|+|
T Consensus 210 A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 210 AWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 11 010 1244444 35599998778886
No 81
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=55.34 E-value=1.5e+02 Score=26.07 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=68.8
Q ss_pred HHHhCCCcccEEEeec--CCCCCCCccccCCCCccccccCCHHHH-----HHHHHHHHHcCCccEEEecCCCHH------
Q 024751 115 LKTLQIEYVDLYLIHW--PMSAKPSEKLRNDIPEEDLVSLDYNGV-----WEAMEECQRHGLTKSIGVSNFSPK------ 181 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~--p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~------ 181 (263)
++-++-.++|++.+.. +... ..+. -+.+.++..+--=|++|+.+.++.
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~-------------------~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~ 115 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI-------------------IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAA 115 (293)
T ss_pred HhhhcccccceEEeeccccccc-------------------hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHH
Confidence 6777888899999884 2110 1111 246777777777899999988754
Q ss_pred -HHHHHHHhCCCCCeeeccccCCCCC-------c-HHHHHHHHhCCceEEEccCCCCCCCCCCCCCC-CCcHHHHHHHHH
Q 024751 182 -KIETILAFATIPPTVNQVEMNPAWQ-------Q-RKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQV-MNNEALKQIAAL 251 (263)
Q Consensus 182 -~l~~~~~~~~~~~~~~q~~~~~~~~-------~-~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~-l~~~~l~~ia~~ 251 (263)
.+++.+...+ +.++.+++..+ . ..++++|+++|+.|+.+..... ..++.... ...-.+..+|.+
T Consensus 116 ~E~er~v~~~g----f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~--~~~~~~~~~~~p~~~~~va~~ 189 (293)
T COG2159 116 EELERRVRELG----FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP--GGAGLEKGHSDPLYLDDVARK 189 (293)
T ss_pred HHHHHHHHhcC----ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC--CCcccccCCCCchHHHHHHHH
Confidence 3444444433 33333433322 1 4699999999999999665543 11111111 233367888888
Q ss_pred hC
Q 024751 252 QQ 253 (263)
Q Consensus 252 ~~ 253 (263)
+.
T Consensus 190 fP 191 (293)
T COG2159 190 FP 191 (293)
T ss_pred CC
Confidence 83
No 82
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=54.80 E-value=1.1e+02 Score=25.61 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEec-CCCHHHHHHHHHhCCC
Q 024751 116 KTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVS-NFSPKKIETILAFATI 192 (263)
Q Consensus 116 ~~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~ 192 (263)
..+|.||+=+.+.- +|..- ..+...++.+.-. ++.+||. |.+.+.+.++++..++
T Consensus 19 ~~~gad~iG~If~~~SpR~V----------------------s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~l 76 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYV----------------------SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGL 76 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcC----------------------CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCC
Confidence 45788888877765 44221 1233444444433 8899987 6678889999887654
Q ss_pred CCeeeccccCCCCCcHHHHHHHHhCC-ceEE
Q 024751 193 PPTVNQVEMNPAWQQRKLVEFCKSKS-IIVT 222 (263)
Q Consensus 193 ~~~~~q~~~~~~~~~~~~i~~~~~~g-i~v~ 222 (263)
+ .+|++-. ...+.++..++.. +.|+
T Consensus 77 d--~VQlHG~---e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 77 D--AVQLHGD---EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred C--EEEECCC---CCHHHHHHHHhhcCCceE
Confidence 4 8887753 2345566655543 4443
No 83
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=54.78 E-value=1.8e+02 Score=26.93 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=90.8
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCC-ccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccC
Q 024751 64 SLYGTERALGEAIAEALKLGLVASR-EELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRN 142 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~ 142 (263)
-.||.++.+.++|++..+.. +. +-++|.|-..+.-. -+++..-+++.-++++ ++++.+|.|......
T Consensus 78 vVfGg~~kL~~~I~~~~~~~---~p~~~I~V~tTC~~~iI-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s----- 145 (421)
T cd01976 78 IVFGGDKKLAKAIDEAYELF---PLNKGISVQSECPVGLI-GDDIEAVARKASKELG---IPVVPVRCEGFRGVS----- 145 (421)
T ss_pred eecCCHHHHHHHHHHHHHhC---CCccEEEEECCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEeCCCccCCc-----
Confidence 35788889999999876543 34 66888877643211 1334444444434454 588899887542210
Q ss_pred CCCccccccCCHHHHHHHHHHH-----HHcCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccCCC-----------
Q 024751 143 DIPEEDLVSLDYNGVWEAMEEC-----QRHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMNPA----------- 204 (263)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~l-----~~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~~~----------- 204 (263)
...+ ...-...+++.|... ...+.|.-||-.++ +.+.+.++++..++++...-.....+
T Consensus 146 -~~~G--~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~l 222 (421)
T cd01976 146 -QSLG--HHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKL 222 (421)
T ss_pred -ccHH--HHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCE
Confidence 0000 000012233333221 12467888885554 35678999998887654322111111
Q ss_pred ---CCcH---HHHHHHH-hCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 205 ---WQQR---KLVEFCK-SKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 205 ---~~~~---~~i~~~~-~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
.... .+.++.+ +.||+++...|+|-. -.+..+++||+..|..
T Consensus 223 niv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~---------~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 223 NLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPT---------KIAESLRKIAAYFDDE 271 (421)
T ss_pred EEEECcHHHHHHHHHHHHHhCCcEEecccCCHH---------HHHHHHHHHHHHhCch
Confidence 0111 2445554 479999988776530 1245678888887765
No 84
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=54.67 E-value=1.7e+02 Score=26.89 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCC---cHHHHHHHHhCCceEEEccCCCC
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
...+..+..+.+.+.++.+-+...+.+.++++++ .+.+.++....-||... -.++.++|+++|+.++.-...+.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~-~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALA-QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 3445555555555556766666567777877764 24455555545555433 25789999999999998777664
No 85
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=54.59 E-value=1.6e+02 Score=26.18 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=79.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCC---C-----CcC-------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCCh
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTA---S-----LYG-------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHR 104 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA---~-----~Yg-------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 104 (263)
.++++..++...+.+.|+..+|-- + .|| ..+.+.+.++...+. -.+++-|+.|+-....+.
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~----~~~~~pVsvKiR~g~~~~ 147 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA----VPAHLPVTVKVRLGWDSG 147 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh----cCCCcceEEEEECCCCCc
Confidence 567888888888889999988832 2 133 245566666654221 122466888863322122
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC-CHHHH
Q 024751 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKI 183 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l 183 (263)
+. ...+-+.++..| +|.+.+|.-..... ...+ ..-|+...++++.-.|--||.... ++++.
T Consensus 148 ~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~---y~g~-----------~~~~~~i~~ik~~~~iPVi~nGdI~t~~da 209 (312)
T PRK10550 148 ER-KFEIADAVQQAG---ATELVVHGRTKEDG---YRAE-----------HINWQAIGEIRQRLTIPVIANGEIWDWQSA 209 (312)
T ss_pred hH-HHHHHHHHHhcC---CCEEEECCCCCccC---CCCC-----------cccHHHHHHHHhhcCCcEEEeCCcCCHHHH
Confidence 22 235555567777 68888895432110 0000 013677777887777888888765 68888
Q ss_pred HHHHHhCCCC
Q 024751 184 ETILAFATIP 193 (263)
Q Consensus 184 ~~~~~~~~~~ 193 (263)
.++++....+
T Consensus 210 ~~~l~~~g~D 219 (312)
T PRK10550 210 QQCMAITGCD 219 (312)
T ss_pred HHHHhccCCC
Confidence 8888765544
No 86
>PTZ00081 enolase; Provisional
Probab=54.58 E-value=1.9e+02 Score=27.11 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC--CccEEEe--cC
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG--LTKSIGV--SN 177 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~ 177 (263)
.+++.+.+-+.+.++.+ +++++-.|.. .+-|+.+.+|.++- .+.-+|= +.
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~---------------------~~D~eg~~~Lt~~lg~~i~IvgDE~~~ 334 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFD---------------------QDDWEAYAKLTAAIGQKVQIVGDDLLV 334 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCC---------------------cccHHHHHHHHHhhCCCceEEcCCccc
Confidence 45666666666666655 4677777632 23356666666553 5544442 34
Q ss_pred CCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEE
Q 024751 178 FSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a 223 (263)
.+++.+.++++....+ ++|+..|-+- .-.+++..|+++|+.++.
T Consensus 335 tn~~~l~~~I~~~aad--~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 335 TNPTRIKKAIEKKACN--ALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCHHHHHHHHHhCCCC--EEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 5688999998876544 5666655432 235789999999999877
No 87
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=54.37 E-value=1.2e+02 Score=24.94 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCC----------CCcC-----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChh
Q 024751 41 DESAMKSAVLESIKLGYRHFDTA----------SLYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRD 105 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg-----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~ 105 (263)
++++..+..+.+.++|+..+|-- +.|| ..+.+-+.++...+ .. . +-|..|+-......+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~--~---~~v~vk~r~~~~~~~ 138 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AV--P---IPVTVKIRLGWDDEE 138 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hc--C---CCEEEEEeeccCCch
Confidence 57888888889999999988753 3466 34556666665421 11 1 345666532211111
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKKIE 184 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~ 184 (263)
...+ +-+.|+..| +|.+.+|....... . . ....|+.+.++++.-.+.-++.... +.+.+.
T Consensus 139 ~~~~-~~~~l~~~G---vd~i~v~~~~~~~~---~-~-----------~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~ 199 (231)
T cd02801 139 ETLE-LAKALEDAG---ASALTVHGRTREQR---Y-S-----------GPADWDYIAEIKEAVSIPVIANGDIFSLEDAL 199 (231)
T ss_pred HHHH-HHHHHHHhC---CCEEEECCCCHHHc---C-C-----------CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 2222 223355567 46667786532110 0 0 0113556666777666666666654 577788
Q ss_pred HHHHhCCCC
Q 024751 185 TILAFATIP 193 (263)
Q Consensus 185 ~~~~~~~~~ 193 (263)
++++....+
T Consensus 200 ~~l~~~gad 208 (231)
T cd02801 200 RCLEQTGVD 208 (231)
T ss_pred HHHHhcCCC
Confidence 887765444
No 88
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.66 E-value=1.3e+02 Score=27.26 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 119 (263)
+++.+ +..+..-+.||+|+-.+-.-. -..+.|+.+.+.+ ..+.+.|..-+-.. .-.+-+.++++|
T Consensus 46 iDp~e--k~~k~~~~~girfV~e~it~~---Nyk~vL~pll~~~---~gqgf~vnLSvd~~-------s~Dlmr~crk~~ 110 (481)
T COG5310 46 IDPRE--KDRKILDERGIRFVQEAITRD---NYKDVLKPLLKGV---GGQGFCVNLSVDTS-------SLDLMRLCRKHG 110 (481)
T ss_pred echhH--HHHHHHHhhhhHHHHHhcChh---hHHHHHHHHhhcC---CCceEEEEeEeccc-------hhHHHHHHHHcC
Confidence 45555 566677789999997775433 2334444433222 34455554433211 123567788999
Q ss_pred CCcccEEEeecCCCC
Q 024751 120 IEYVDLYLIHWPMSA 134 (263)
Q Consensus 120 ~~~iDl~~lh~p~~~ 134 (263)
+=|||-+.=-|+.++
T Consensus 111 vLYidTvVEpW~gfy 125 (481)
T COG5310 111 VLYIDTVVEPWLGFY 125 (481)
T ss_pred eEEEeeeeccccccc
Confidence 999999888887543
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.03 E-value=1.5e+02 Score=25.53 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCC---HHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFS---PKK 182 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~ 182 (263)
.-+..+-+.|.++|+++|++=+......... ........+.|+.+.++.+ +..+..+++... .+.
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 87 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFK-----------GKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDL 87 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccC-----------CCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHH
Confidence 3445566669999999988876553311110 0011112455666666543 346666666443 344
Q ss_pred HHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 183 IETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
+..+.+ ..++..-+....+.+..-.+.+++++++|+.+...
T Consensus 88 l~~a~~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 88 LEPASG-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHhc-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 444433 33443333333333333367899999999876643
No 90
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=52.45 E-value=29 Score=30.17 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCC
Q 024751 178 FSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
|+...+.++.+..+++..++-+.||+... ++-++|++.|+.+++--|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 45566677777788888888888866554 899999999999999999974
No 91
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=52.09 E-value=94 Score=24.07 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=49.9
Q ss_pred CCccEEEecCCCHHH----HHHHHHhCCCCCeeeccccCCCCCc----------HHHHHHHHhCCceEEEccCCCCCCCC
Q 024751 168 GLTKSIGVSNFSPKK----IETILAFATIPPTVNQVEMNPAWQQ----------RKLVEFCKSKSIIVTAFSPLGAVGSS 233 (263)
Q Consensus 168 G~ir~iGvs~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~~i~~~~~~gi~v~a~spl~~~G~l 233 (263)
-.+...|++..+... +.+.+...+.+.+++++.-|-.... ..+++.+++++..++-.++... -..
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~-~~~ 115 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAP-PNY 115 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC-Ccc
Confidence 345667888766543 3344444456666777666643221 4688889888888887654321 110
Q ss_pred CCCCCCCCcHHHHHHHHHhCCC
Q 024751 234 WGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 234 ~~~~~~l~~~~l~~ia~~~~~t 255 (263)
.......-+..++++|+++++.
T Consensus 116 ~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 116 GPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred chHHHHHHHHHHHHHHHHcCCc
Confidence 0000111246788899988864
No 92
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=52.09 E-value=1.5e+02 Score=25.30 Aligned_cols=108 Identities=12% Similarity=0.098 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
+++.+.+..++.+ .-|.+.||+=.-- +|... +.+ . ....+.....++.+++.-.+ -|.|-+++++
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~------~~~--~----~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~ 87 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE------PVS--V----EEELERVIPVLRALAGEPDV-PISVDTFNAE 87 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC------cCC--H----HHHHHHHHHHHHHHHhcCCC-eEEEeCCcHH
Confidence 4455555544443 5588899986432 33211 011 0 01133455566666655233 3888899999
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCC
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
.+++.++.+ .+.+|-+ +......++++.++++|..++.+-.-+
T Consensus 88 v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 88 VAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 999999987 4555533 333223689999999999999876443
No 93
>PRK07328 histidinol-phosphatase; Provisional
Probab=51.88 E-value=1.5e+02 Score=25.33 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCcC---------------CHHHHHHHHHHHHh--cCCCCCCccEEEeeCCCCCCCChhH
Q 024751 44 AMKSAVLESIKLGYRHFDTASLYG---------------TERALGEAIAEALK--LGLVASREELFITTKLWCSDAHRDL 106 (263)
Q Consensus 44 ~~~~~l~~A~~~Gi~~~DtA~~Yg---------------se~~lG~al~~~~~--~~~~~~R~~~~I~tK~~~~~~~~~~ 106 (263)
...+++..|.+.|+..+=.+++.. +...+-..+++..+ ... .+=+|++-.-+... + .
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y--~~i~Il~GiE~~~~---~-~ 92 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARF--PDLYVRLGIEADYH---P-G 92 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHc--CCCeEEEEEEeccc---C-C
Confidence 357889999999999775554421 11122223322200 010 11123333322211 1 2
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHH----HHHHHHHcCCccEEE
Q 024751 107 VVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWE----AMEECQRHGLTKSIG 174 (263)
Q Consensus 107 i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~G~ir~iG 174 (263)
....+++.|+.-..||+ +..+|+...+. ...+.....+...+.++.++ .+.++.+.|.+.-||
T Consensus 93 ~~~~~~~~l~~~~~D~v-igSvH~~~~~~----~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 93 TEEFLERLLEAYPFDYV-IGSVHYLGAWG----FDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred cHHHHHHHHHhCCCCeE-EEEEeecCCcC----CCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 33445566666666666 77779864221 10110001111223344443 577788888887776
No 94
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=51.28 E-value=2e+02 Score=26.52 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCc
Q 024751 67 GTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPE 146 (263)
Q Consensus 67 gse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~ 146 (263)
|+++.+-++|++..+.. +.+-++|.+-.-.. .--+++...+++.-++.+ +.++.+|.|......
T Consensus 68 G~~~kL~~~I~~~~~~~---~p~~I~v~~tC~~~-iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--------- 131 (430)
T cd01981 68 GSQEKVVENITRKDKEE---KPDLIVLTPTCTSS-ILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNE--------- 131 (430)
T ss_pred CcHHHHHHHHHHHHHhc---CCCEEEEeCCccHH-HHhhCHHHHHHHhhhccC---CCeEEecCCCccchH---------
Confidence 45667777777664432 34556777665322 111333333333333333 578888888543210
Q ss_pred cccccCCHHHHHHHHHH-HH-------------HcCCccEEEecCC------CHHHHHHHHHhCCCCCeeecccc-C---
Q 024751 147 EDLVSLDYNGVWEAMEE-CQ-------------RHGLTKSIGVSNF------SPKKIETILAFATIPPTVNQVEM-N--- 202 (263)
Q Consensus 147 ~~~~~~~~~~~~~~l~~-l~-------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~~~q~~~-~--- 202 (263)
.. -...++.++-+ +. ++..|.-||.++. +.+.+.++++..++++..+-... +
T Consensus 132 ~~----g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~ 207 (430)
T cd01981 132 LQ----AADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDD 207 (430)
T ss_pred HH----HHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHH
Confidence 00 01222222221 11 2356888887743 45678888888877654422111 1
Q ss_pred ----------CCCCc---HHHHHHH-HhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 203 ----------PAWQQ---RKLVEFC-KSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 203 ----------~~~~~---~~~i~~~-~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
+...+ ..+.++. ++.||+++...|+|-. -.+..+++|++..++.
T Consensus 208 i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G~~---------~t~~~l~~i~~~~g~~ 265 (430)
T cd01981 208 LNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIGVV---------ATARFLREIQELLGIQ 265 (430)
T ss_pred HHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCChH---------HHHHHHHHHHHHhCCc
Confidence 11011 1234444 4569999888787641 1234567777777654
No 95
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=51.07 E-value=74 Score=29.19 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccCC
Q 024751 157 VWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl 227 (263)
-++.+.+|++...+- +.|-|-++..++.++++...++ +.|......- .-.++...|+++|+.+..++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avd--il~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVD--IPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCc--EEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 356788888876655 5566677888899988876655 6666654332 3368999999999999998765
No 96
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=50.29 E-value=1.3e+02 Score=25.90 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=52.8
Q ss_pred ChH-HHHHHHHHHHHcCCcEEeCCCCcC----CH---HHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHH
Q 024751 41 DES-AMKSAVLESIKLGYRHFDTASLYG----TE---RALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALK 112 (263)
Q Consensus 41 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg----se---~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~ 112 (263)
+++ +..++.+.|.++|..|+=|+..|+ +. +.+-++++++ + ...+ +-.|....-.+.++..+-++
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~---~~~~--vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G---VAKT--VGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c---cCCC--eeEEccCCCCCHHHHHHHHH
Confidence 455 478899999999999999999986 22 3333343322 1 1222 44555444556688999999
Q ss_pred HHHHHhCCCccc
Q 024751 113 KSLKTLQIEYVD 124 (263)
Q Consensus 113 ~sL~~Lg~~~iD 124 (263)
..-+.||.+|++
T Consensus 216 ag~~~lg~~~~~ 227 (257)
T PRK05283 216 LADEILGADWAD 227 (257)
T ss_pred HHHHHhChhhcC
Confidence 999999998876
No 97
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=50.12 E-value=58 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCceEEEccCCCC
Q 024751 208 RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 208 ~~~i~~~~~~gi~v~a~spl~~ 229 (263)
.++++.|+++||.+++|-.+.-
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 6899999999999999988753
No 98
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=50.07 E-value=1.3e+02 Score=24.00 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=54.4
Q ss_pred CccEEEecCCCHHHH------HHHHHhC-CCCCeeeccccCCCCC-------c--------HHHHHHHHhCCceEEEccC
Q 024751 169 LTKSIGVSNFSPKKI------ETILAFA-TIPPTVNQVEMNPAWQ-------Q--------RKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 169 ~ir~iGvs~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~~i~~~~~~gi~v~a~sp 226 (263)
.|...|++..+..++ .+++... ..+.+++++..|-... . ..+++.+++++..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 566778888876643 2444432 4577778877764322 1 3588889999999999988
Q ss_pred CCCCCCCCCC--CCCCC--cHHHHHHHHHhCCC
Q 024751 227 LGAVGSSWGT--NQVMN--NEALKQIAALQQGE 255 (263)
Q Consensus 227 l~~~G~l~~~--~~~l~--~~~l~~ia~~~~~t 255 (263)
.......... ...+. ...++++|+++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 7531111111 11111 46789999999865
No 99
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=50.02 E-value=1.2e+02 Score=28.43 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCcEEeCCCC---------cC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFDTASL---------YG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~---------Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...+.|+|.+...-- .+ +.+.+-++++...+.|+ . .+-+..=++.+..+.+.+.+.++.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~--~--~v~~dli~GlPgqt~e~~~~tl~~ 227 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGF--E--SINFDLIYGLPHQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCC--C--cEEEeEEEeCCCCCHHHHHHHHHH
Confidence 45566667779988743321 11 34455566766543343 1 122222224456677888887777
Q ss_pred HHHHhCCCcccEEEe-ecCCCCCCC---ccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLI-HWPMSAKPS---EKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~l-h~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.+ .++.+++.+|.+ |.|...... .+...|.. .........+.+.|.+.|.. .+|+++|..
T Consensus 228 ~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~-----~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 228 VI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDA-----EERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred HH-hcCCCEEEEeccccccchhhHHhcCCccCCcCH-----HHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 65 589999999876 334211000 00011100 01122223456778899985 599999974
No 100
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=49.50 E-value=1.6e+02 Score=24.74 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=39.7
Q ss_pred CcEEeC-CCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCC-------CChhHHHHHHHHHHHHhCCCcccEE
Q 024751 57 YRHFDT-ASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSD-------AHRDLVVPALKKSLKTLQIEYVDLY 126 (263)
Q Consensus 57 i~~~Dt-A~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~-------~~~~~i~~~~~~sL~~Lg~~~iDl~ 126 (263)
.+.++. +..|+ +.+.+..+.++ ..+++..+.|++..- ...+.+.+.+-+.++-|| +++..+
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~--------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~i 89 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ--------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPI 89 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT--------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh--------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEE
Confidence 455544 23576 78888877765 468899999985321 123555466666888998 899999
Q ss_pred EeecCC
Q 024751 127 LIHWPM 132 (263)
Q Consensus 127 ~lh~p~ 132 (263)
++.-|-
T Consensus 90 L~Q~Pp 95 (230)
T PF01904_consen 90 LFQFPP 95 (230)
T ss_dssp EEE--T
T ss_pred EEEcCC
Confidence 999873
No 101
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=49.43 E-value=2e+02 Score=25.86 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEccCC
Q 024751 157 VWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~spl 227 (263)
.++.+.+|++...+. +.|=+-++...+.++++...++ ++|+...-. ..-.+++..|+++|+.++..+-+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d--~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~ 299 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAAD--VFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML 299 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCC--eEEEeecccCCHHHHHHHHHHHHHcCCceeecCcc
Confidence 357788888776555 5566677888999999876655 566654432 22367899999999999865433
No 102
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=48.46 E-value=82 Score=25.33 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=51.2
Q ss_pred HHHcCCccEEEecCCCHHHH----HHHHHhCCCCCeeeccccCCCCCc----------HHHHHHHHhCCceEEEccC-CC
Q 024751 164 CQRHGLTKSIGVSNFSPKKI----ETILAFATIPPTVNQVEMNPAWQQ----------RKLVEFCKSKSIIVTAFSP-LG 228 (263)
Q Consensus 164 l~~~G~ir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~~i~~~~~~gi~v~a~sp-l~ 228 (263)
|.+...|...|++..+...+ .+.+.....+.+++++..|-.... ..+++.+++++..++...+ +-
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 33456688889998876543 333333356777788877754321 3688888888876665432 21
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 229 AVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 229 ~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
. .............++++|+++++.
T Consensus 120 ~--~~~~~~~~~~~~~~~~~a~~~~v~ 144 (191)
T PRK10528 120 A--NYGRRYNEAFSAIYPKLAKEFDIP 144 (191)
T ss_pred C--cccHHHHHHHHHHHHHHHHHhCCC
Confidence 0 000000001124578889988865
No 103
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.85 E-value=2.4e+02 Score=26.37 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEeCCCCcC----------------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHH
Q 024751 46 KSAVLESIKLGYRHFDTASLYG----------------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVP 109 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Yg----------------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~ 109 (263)
.+.++...++|+|.| +.| +.+.+-++++...+.| ...+.+-.=++.+..+.+.+++
T Consensus 163 ~e~l~~l~~aGvnRi----SiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g----~~~v~~DlI~GlPgqT~e~~~~ 234 (449)
T PRK09058 163 DEKADAALDAGANRF----SIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD----RAAVVCDLIFGLPGQTPEIWQQ 234 (449)
T ss_pred HHHHHHHHHcCCCEE----EecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC----CCcEEEEEEeeCCCCCHHHHHH
Q ss_pred HHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccc-cccCCHHHHHHHHHHHHHcCCccEEEecCC
Q 024751 110 ALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEED-LVSLDYNGVWEAMEECQRHGLTKSIGVSNF 178 (263)
Q Consensus 110 ~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 178 (263)
.++..++ ++.+++++|.+.-.................. ..+....-.-.+.+.|.+.|. +.+++|||
T Consensus 235 ~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~f 302 (449)
T PRK09058 235 DLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHW 302 (449)
T ss_pred HHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeee
No 104
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=47.41 E-value=2e+02 Score=25.36 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 118 (263)
++.++..++++.+.+.|++.+.-...-. -...+-+.++...+.+ .-..+.|+|-... +.+.+ ..|...
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~---~~~~i~itTNG~l-------l~~~~-~~L~~a 117 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP---GIRDLALTTNGYL-------LARRA-AALKDA 117 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC---CCceEEEEcCchh-------HHHHH-HHHHHc
Confidence 5678889999999999998776543111 1222445555431111 1235667666421 11222 234444
Q ss_pred CCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHhCC-CC
Q 024751 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL----TKSIGVSNFSPKKIETILAFAT-IP 193 (263)
Q Consensus 119 g~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~~-~~ 193 (263)
|++.+- +-+|..+..... . .. ....++.++++++.+++.|. |..+.+...+.+++.++++... ..
T Consensus 118 gl~~i~-ISlds~~~e~~~-~-----i~---~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 118 GLDRVN-VSLDSLDPERFK-A-----IT---GRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred CCCEEE-EEeccCCHHHhc-c-----CC---CCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 554332 333433211000 0 00 01247889999999999986 3344444556666666666542 22
Q ss_pred CeeeccccCCCCC-----------cHHHHHHHHhCCceE
Q 024751 194 PTVNQVEMNPAWQ-----------QRKLVEFCKSKSIIV 221 (263)
Q Consensus 194 ~~~~q~~~~~~~~-----------~~~~i~~~~~~gi~v 221 (263)
..+..++|.++.. ..++.+..+++|+.+
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTL 226 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcc
Confidence 2344444444321 145777777775543
No 105
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=47.18 E-value=1.8e+02 Score=26.92 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEe----CCCC-----cC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFD----TASL-----YG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~D----tA~~-----Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...++|++.+. |... .+ +.+.+-++++...+.|+ ..+-+..=++.+..+.+.+.+.++.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~----~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGF----PILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 3556666677988773 3321 12 33444566665533342 1122233335567788888888887
Q ss_pred HHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHH-HHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVW-EAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.+ .|+.+++.++.+.-.....-. ....+ . .....+.+ .+.+.|.+.|. +.+++++|..
T Consensus 217 ~~-~l~~~~is~y~L~~~~~T~l~-~~~~~--~----~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 217 AL-VYRPEELFLYPLYVRPLTGLG-RRARA--W----DDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred HH-hCCCCEEEEccccccCCCccc-hhcCC--C----HHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 76 589888888876532110000 00000 0 01112233 34566778886 5699999964
No 106
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=46.85 E-value=57 Score=23.56 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 159 EAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 159 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
.+|+..++.|++ -+| ..+..+.++....+.+++-...+. .....+..+|++++|+++.|
T Consensus 6 ~~l~~a~ragkl-~~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 6 RELRVAVDTGKV-ILG-----SKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHcCCE-EEc-----HHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 467777778876 233 455666667676676666555433 23367889999999998776
No 107
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=46.46 E-value=1.8e+02 Score=26.41 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEeCCCCc---------C---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFDTASLY---------G---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Y---------g---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...+.|+|.+...--- | +...+-++++...+.|+ +.+-+--=.+.+..+.+.+.+.++.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~----~~v~~Dli~GlPgqt~~~~~~~l~~ 178 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGF----SNLSIDLIYGLPTQSLSDFIVDLHQ 178 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CeEEEEeecCCCCCCHHHHHHHHHH
Confidence 455777778899988433211 1 22333445554422232 1122222224466778888888888
Q ss_pred HHHHhCCCcccEEEee-cCCCC--C---CCccccCCCCccccccCCHHHHH-HHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLIH-WPMSA--K---PSEKLRNDIPEEDLVSLDYNGVW-EAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh-~p~~~--~---~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.++ ++.+++.+|.+. .|... . .+ ....| .+ ....+.+ .+.+.|.+.|. ..+++|||..
T Consensus 179 ~~~-l~~~~is~y~l~~~~gT~l~~~~~~~-~~~~~--~~----~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 179 AIT-LPITHISLYNLTIDPHTSFYKHRKRL-LPSIA--DE----EILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred HHc-cCCCeEEEeeeEecCCChHHHHHhcC-CCCCc--CH----HHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 664 899999999886 23210 0 00 00011 00 0012222 35566888887 5689999964
No 108
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.45 E-value=1.6e+02 Score=24.47 Aligned_cols=96 Identities=14% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 185 (263)
..+..+-+.|.++|++++++- .|.... +..+.++.+.+.... .+..+++....+.++.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg---~~~~~~-----------------~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVG---FPFASE-----------------DDFEQVRRLREALPN--ARLQALCRANEEDIER 71 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE---HCTSSH-----------------HHHHHHHHHHHHHHS--SEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEc---ccccCH-----------------HHHHHhhhhhhhhcc--cccceeeeehHHHHHH
Confidence 344455566999999888887 231100 123344455555555 5555666677777777
Q ss_pred HHH---hCCCCCeeeccccCCCC--------------CcHHHHHHHHhCCceEEE
Q 024751 186 ILA---FATIPPTVNQVEMNPAW--------------QQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 186 ~~~---~~~~~~~~~q~~~~~~~--------------~~~~~i~~~~~~gi~v~a 223 (263)
.++ ....+...+-...|..+ .-.+.+.++++.|..+..
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~ 126 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF 126 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe
Confidence 554 34555444444444411 114678999999999833
No 109
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=46.12 E-value=1.4e+02 Score=26.42 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEE--ecCCC
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIG--VSNFS 179 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG--vs~~~ 179 (263)
.+++.+.+-....+++ |. ++.+-.|-.. +.-+.|..|.+-.. .++.-+| +..-+
T Consensus 133 ~s~delid~y~~li~~----YP-IvsIEDpf~e------------------dD~e~w~~lt~~~g-~~~~iVGDDl~vTn 188 (295)
T PF00113_consen 133 KSSDELIDYYKDLIKK----YP-IVSIEDPFDE------------------DDWEGWAKLTKRLG-DKIQIVGDDLFVTN 188 (295)
T ss_dssp EEHHHHHHHHHHHHHH----S--EEEEESSS-T------------------T-HHHHHHHHHHHT-TTSEEEESTTTTT-
T ss_pred cCHHHHHHHHHHHHHh----cC-eEEEEccccc------------------cchHHHHHHHHhhh-cceeeecccccccc
Confidence 3455665555555544 55 8888877321 12355666665543 3677777 34456
Q ss_pred HHHHHHHHHhCCCCCe---eeccccCCCCCcHHHHHHHHhCCceEEEccCCC
Q 024751 180 PKKIETILAFATIPPT---VNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 180 ~~~l~~~~~~~~~~~~---~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
++.+.+.++.....-. +||+ ......-+.+..|+++|..++.-..-+
T Consensus 189 ~~ri~~~i~~~~~na~llK~NQi--gTvte~lea~~~a~~~g~~~vvS~rsg 238 (295)
T PF00113_consen 189 PKRIKKGIEKKACNALLLKPNQI--GTVTETLEAVKLAKSAGWGVVVSHRSG 238 (295)
T ss_dssp HHHHHHHHHCT--SEEEE-HHHH--SSHHHHHHHHHHHHHTT-EEEEE--SS
T ss_pred hhhhhccchhhhccchhhhhhhh--HHHHHHHHHHHHHHHCCceeeccCCCC
Confidence 8889888875432211 2221 111222467888999999988866544
No 110
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=46.07 E-value=88 Score=23.38 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
...++.|...++.|++ ..| ..+..+.++......++.-...++.+....+..+|++++|+++-+
T Consensus 12 ~ki~~lL~la~ragkl-~~G-----~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~ 75 (117)
T TIGR03677 12 NKALEAVEKARETGKI-KKG-----TNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV 75 (117)
T ss_pred HHHHHHHHHHHHcCCE-eEc-----HHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 5577777888888875 233 466777778777787777777766444467888999999997664
No 111
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=45.59 E-value=96 Score=29.78 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCC
Q 024751 151 SLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 151 ~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
..+..++.+-+.+.+++.+|+.||+=.+..-.+...++..+++++.+--.|.-+...-.-++..-.+|.-+..-.|+..
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~m~ 487 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPLME 487 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcHHh
Confidence 4567889999999999999999999999999999999999988666544554333334455556666666666666643
No 112
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=45.43 E-value=1.3e+02 Score=25.05 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 115 (263)
.+.++...+.+.+.++|..|+=|+..|+ +..- -+.+++. -+++ +-.|....-.+.++..+-++..-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d-v~~m~~~-------v~~~--v~IKaaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVED-VRLMRNT-------VGDT--IGVKASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH-HHHHHHH-------hccC--CeEEEeCCCCCHHHHHHHHHHhh
Confidence 3567788999999999999999998885 2211 1333433 1221 33444333336788889999999
Q ss_pred HHhCCCc
Q 024751 116 KTLQIEY 122 (263)
Q Consensus 116 ~~Lg~~~ 122 (263)
.|+|+++
T Consensus 199 ~riGts~ 205 (211)
T TIGR00126 199 SRIGASA 205 (211)
T ss_pred HHhCcch
Confidence 9999875
No 113
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.36 E-value=1.8e+02 Score=24.32 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=27.0
Q ss_pred cccCeeceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCc-CCHHHHHHHHHHH
Q 024751 26 RKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLY-GTERALGEAIAEA 79 (263)
Q Consensus 26 ~~v~~iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-gse~~lG~al~~~ 79 (263)
+.+|.++-|..+ +.+.+ ..+++.|+..+..+... .+...+.++.+.+
T Consensus 70 ~~~pv~~~GGI~---s~~d~----~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 70 VFIPLTVGGGIR---SLEDA----RRLLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred CCCCEEEeCCCC---CHHHH----HHHHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 456777766654 34444 44445687777655443 3555666666654
No 114
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=44.98 E-value=1.2e+02 Score=21.94 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHH---HcCCccEEEecCCCHHHHHHHHHhCCCCC
Q 024751 156 GVWEAMEECQ---RHGLTKSIGVSNFSPKKIETILAFATIPP 194 (263)
Q Consensus 156 ~~~~~l~~l~---~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 194 (263)
..+..|.++. ++..++.||||..+.+.+.++.+...++.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~ 84 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPF 84 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSS
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcccc
Confidence 3444444444 45568999999999999999988766443
No 115
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.54 E-value=62 Score=26.80 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 157 VWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
..+.+++++++.-=-.||..+. +.++++++++.+- ++.+ +|. -..+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fiv-----SP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIV-----SPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEeC
Confidence 4455666655533346888764 5788888877543 3322 332 246899999999988875
No 116
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=44.34 E-value=2.7e+02 Score=26.02 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHH-cCCc-EEeCCCCcCCHHHHHHHHHHHHh--cCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIK-LGYR-HFDTASLYGTERALGEAIAEALK--LGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~-~Gi~-~~DtA~~Ygse~~lG~al~~~~~--~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 115 (263)
.+.+...+.+..+++ .+.. .+-..+..| ...+-+++.++.. .|+.-..++|+|++=. ..+++-.+
T Consensus 104 fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G-~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~----------q~al~l~~ 172 (459)
T COG1167 104 FPLEALRRALARVLRNYGASLALQYGPTAG-LPELREAIAAYLLARRGISCEPEQIVITSGA----------QQALDLLL 172 (459)
T ss_pred CCHHHHHHHHHHHHhhcchhhhhcCCCCCC-cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH----------HHHHHHHH
Confidence 455666666666663 2333 221111122 2333444433332 3653245677777532 23344333
Q ss_pred HHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecC----CCHHHHHHHHHhCC
Q 024751 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSN----FSPKKIETILAFAT 191 (263)
Q Consensus 116 ~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~~ 191 (263)
+-| ++-=|.+.+..|.. .. ++.-+...| ++.++|.. .+++.++++++..+
T Consensus 173 ~~l-~~pGd~v~vE~PtY---------------------~~---~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~~~ 226 (459)
T COG1167 173 RLL-LDPGDTVLVEDPTY---------------------PG---ALQALEALG-ARVIPVPVDEDGIDPEALEEALAQWK 226 (459)
T ss_pred HHh-CCCCCEEEEcCCCc---------------------HH---HHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhhcC
Confidence 333 23458999998843 22 333333333 67888864 46889999988766
Q ss_pred CCCeeeccccC-CCC------CcHHHHHHHHhCCceEEEccCCC
Q 024751 192 IPPTVNQVEMN-PAW------QQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 192 ~~~~~~q~~~~-~~~------~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
++..++.-.++ |.- +...++++|+++|+.||---+.+
T Consensus 227 ~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~ 270 (459)
T COG1167 227 PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG 270 (459)
T ss_pred CcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch
Confidence 66555443332 221 23679999999999999876664
No 117
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=44.29 E-value=91 Score=28.63 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEccCC
Q 024751 157 VWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~spl 227 (263)
-++.+.+|++.-.+. ..|=|-++...+.++++...++ ++|....-. ..-.++.+.|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~d--ii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLID--YIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCC--EEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 356788888876665 6677778899999999876555 777665543 23368999999999999987553
No 118
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=43.87 E-value=2.3e+02 Score=24.94 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=87.4
Q ss_pred eeceeccccC------CChHHHHHHHHHHH-HcCCcEEeCCCCcCC------HHHHHHHHHHHHhcCCCCCCccEEEeeC
Q 024751 30 VIGLGSAVDN------IDESAMKSAVLESI-KLGYRHFDTASLYGT------ERALGEAIAEALKLGLVASREELFITTK 96 (263)
Q Consensus 30 ~iglG~~~~~------~~~~~~~~~l~~A~-~~Gi~~~DtA~~Ygs------e~~lG~al~~~~~~~~~~~R~~~~I~tK 96 (263)
.|.||.+.-. .+.++..+.+...+ ..|...+|--..|+. -..+-++|+.+.+. +..+.|+.-
T Consensus 71 iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~-----~p~l~vs~T 145 (294)
T cd06543 71 IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE-----YPDLKISFT 145 (294)
T ss_pred EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH-----CCCcEEEEe
Confidence 3466666532 34555555566566 459999998877772 25677888876432 224444444
Q ss_pred C--CCCCCChhHHHHHHHHHHHHhCC--CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccE
Q 024751 97 L--WCSDAHRDLVVPALKKSLKTLQI--EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS 172 (263)
Q Consensus 97 ~--~~~~~~~~~i~~~~~~sL~~Lg~--~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 172 (263)
+ .+...+++.. .+-+..+.-|+ ++|.++-+..-... +. .+. -..+..+.+.++..=+.-+
T Consensus 146 lp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~-~~---------~~m----g~~a~~aa~~~~~ql~~~~ 209 (294)
T cd06543 146 LPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSA-GS---------QDM----GAAAISAAESLHDQLKDLY 209 (294)
T ss_pred cCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCC-Cc---------ccH----HHHHHHHHHHHHHHHHHHc
Confidence 4 3444433322 23333344443 45555555432211 00 000 2333444444433211111
Q ss_pred EEecCCCHHHHHHHHHhCCCCCeeeccccC--CCCC--cHHHHHHHHhCCceEEEccCCCC
Q 024751 173 IGVSNFSPKKIETILAFATIPPTVNQVEMN--PAWQ--QRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~--~~~~--~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
=+ ++..+ +-....+.|.+=+.... .+.. -..+.+|++++||+.++|-.+.+
T Consensus 210 ~~---~s~~~---~~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~R 264 (294)
T cd06543 210 PK---LSDAE---LWAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNR 264 (294)
T ss_pred cC---CCHHH---HHHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccC
Confidence 11 22222 22233455555444432 1222 26799999999999999999975
No 119
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.63 E-value=76 Score=26.35 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 157 VWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
..+.+++++++.-=-.||..+. +.++++++++.+ -++. .+|.. ..+++++|+++|+.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi-----vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI-----VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE-----ECCCC-CHHHHHHHHHcCCcEEC
Confidence 4455666665543356888775 678888888754 3332 23332 46899999999998876
No 120
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.35 E-value=1.2e+02 Score=25.12 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCC
Q 024751 114 SLKTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-NFSPKKIETILAFAT 191 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~ 191 (263)
....+|.|++=+.+.. .|.. .+ .+..+.+.+.. .+.++.+||. |-+++.+.++++..+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~------------------V~-~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~ 75 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH------------------QT-ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTS 75 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc------------------CC-HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCC
Confidence 3456899999887433 2211 11 22333443332 3468889996 778899999988766
Q ss_pred CCCeeecccc
Q 024751 192 IPPTVNQVEM 201 (263)
Q Consensus 192 ~~~~~~q~~~ 201 (263)
+ .++|++-
T Consensus 76 ~--d~vQLHG 83 (207)
T PRK13958 76 I--NTIQLHG 83 (207)
T ss_pred C--CEEEECC
Confidence 4 4888774
No 121
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=42.04 E-value=2e+02 Score=23.89 Aligned_cols=92 Identities=11% Similarity=0.180 Sum_probs=54.2
Q ss_pred ceeccccCCChHHHHHHHHHHHHc-----CCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCC--------
Q 024751 32 GLGSAVDNIDESAMKSAVLESIKL-----GYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLW-------- 98 (263)
Q Consensus 32 glG~~~~~~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~-------- 98 (263)
|=|+...+.++++..+.+..|++. |+|--=.+-...++..+...++... .|.-+||=++..
T Consensus 63 gp~~L~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~------~~gl~FvDS~T~~~s~a~~~ 136 (213)
T PF04748_consen 63 GPGALLTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLK------ERGLFFVDSRTTPRSVAPQV 136 (213)
T ss_dssp -TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHH------HTT-EEEE-S--TT-SHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHH------HcCCEEEeCCCCcccHHHHH
Confidence 333333346788888888888876 3333222222235777777777652 455577744431
Q ss_pred ---------------CCCCChhHHHHHHHHHHHHhCCCcccEEEee
Q 024751 99 ---------------CSDAHRDLVVPALKKSLKTLQIEYVDLYLIH 129 (263)
Q Consensus 99 ---------------~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh 129 (263)
....+.+.|++++++..+.-...-.-+...|
T Consensus 137 A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh 182 (213)
T PF04748_consen 137 AKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGH 182 (213)
T ss_dssp HHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEc
Confidence 1246789999999999888877777777777
No 122
>PRK05660 HemN family oxidoreductase; Provisional
Probab=41.97 E-value=2.7e+02 Score=25.28 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCcEEe----CCCCc-----C---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHH
Q 024751 47 SAVLESIKLGYRHFD----TASLY-----G---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKS 114 (263)
Q Consensus 47 ~~l~~A~~~Gi~~~D----tA~~Y-----g---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 114 (263)
+.++...++|+|.+- +...- + +.+.+-++++...+.|+ . .+-+..=++.+..+.+.+.+.++..
T Consensus 108 e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~--~--~v~~dli~Glpgqt~~~~~~~l~~~ 183 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGL--R--SFNLDLMHGLPDQSLEEALDDLRQA 183 (378)
T ss_pred HHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC--C--eEEEEeecCCCCCCHHHHHHHHHHH
Confidence 556666677877652 22210 1 23333444554433343 1 1223333344667778888888776
Q ss_pred HHHhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHH---H-HHHHHHHcCCccEEEecCCCHH
Q 024751 115 LKTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVW---E-AMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
++ ++.+++.+|.+- .|...........| +.++.| + +.+.|.+.|. ..+++|||...
T Consensus 184 ~~-l~p~~is~y~l~~~~gT~l~~~~~~~~---------~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~~ 244 (378)
T PRK05660 184 IA-LNPPHLSWYQLTIEPNTLFGSRPPVLP---------DDDALWDIFEQGHQLLTAAGY-QQYETSAYAKP 244 (378)
T ss_pred Hh-cCCCeEEeeccEeccCCcccccCCCCc---------CHHHHHHHHHHHHHHHHHcCC-cEeecccccCC
Confidence 55 899999998885 33211000000011 112222 2 3445777887 45799999753
No 123
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.91 E-value=1.4e+02 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHhCCceEEEcc
Q 024751 205 WQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 205 ~~~~~~i~~~~~~gi~v~a~s 225 (263)
..+.+++++|+++|+.++.-+
T Consensus 89 ~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp S--HHHHHHHHHTT-EEEESS
T ss_pred hHHHHHHHHHHHcCCEEEeCC
Confidence 345789999999999988633
No 124
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=41.90 E-value=1.8e+02 Score=29.61 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCC
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIE 121 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~ 121 (263)
.+-+.++++.|.|.|+..+ ..|..|.. +..-| . +-|+-|..-+...+- ...-+|++..+--...
T Consensus 16 gEIAIRvFRAa~ELgi~TV---AIys~ED~-~S~HR-~-------KADEsY~iG~~~~Pi----~aYL~IdeII~iAk~~ 79 (1149)
T COG1038 16 GEIAIRVFRAANELGIKTV---AIYSEEDR-LSLHR-F-------KADESYLIGEGKGPV----EAYLSIDEIIRIAKRS 79 (1149)
T ss_pred chhhHHHHHHHHhcCceEE---EEeecccc-chhhh-c-------cccceeeecCCCCch----HHhccHHHHHHHHHHc
Confidence 3778999999999999988 46754433 22222 2 455556555553332 2222233333222222
Q ss_pred cccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH------HHHHHhCCCCCe
Q 024751 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI------ETILAFATIPPT 195 (263)
Q Consensus 122 ~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l------~~~~~~~~~~~~ 195 (263)
-.|. +| |.... ..+..+--+++.++| |.+||=+....+.+ ..+...++++
T Consensus 80 gaDa--Ih-PGYGf------------------LSEn~efA~~c~eaG-I~FIGP~~e~ld~~GdKv~Ar~~A~~agvP-- 135 (1149)
T COG1038 80 GADA--IH-PGYGF------------------LSENPEFARACAEAG-ITFIGPKPEVLDMLGDKVKARNAAIKAGVP-- 135 (1149)
T ss_pred CCCe--ec-CCccc------------------ccCCHHHHHHHHHcC-CEEeCCCHHHHHHhccHHHHHHHHHHcCCC--
Confidence 3443 33 21111 222333445666777 56898764322221 2223334443
Q ss_pred eeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCC
Q 024751 196 VNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVG 231 (263)
Q Consensus 196 ~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G 231 (263)
++.-.-.+...-.++.+|+++.|-+++.-..+|++|
T Consensus 136 vipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGG 171 (1149)
T COG1038 136 VIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGG 171 (1149)
T ss_pred ccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCc
Confidence 222222223334789999999999999999999744
No 125
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.58 E-value=2.3e+02 Score=24.37 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEecCCCHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFSPK 181 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~ 181 (263)
+.+... .+-+.|.++|+++|.+-. |.. ..+.++..+.+.+.++ .+-.+....+.+
T Consensus 20 s~~~k~-~i~~~L~~~Gv~~IEvG~---P~~--------------------~~~~~~~~~~l~~~~~~~~v~~~~r~~~~ 75 (262)
T cd07948 20 DTEDKI-EIAKALDAFGVDYIELTS---PAA--------------------SPQSRADCEAIAKLGLKAKILTHIRCHMD 75 (262)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEC---CCC--------------------CHHHHHHHHHHHhCCCCCcEEEEecCCHH
Confidence 334333 444558999988877763 421 1334555555554444 344555667788
Q ss_pred HHHHHHHhCCCCCeeeccccCCCC------C---c-----HHHHHHHHhCCceEEEcc
Q 024751 182 KIETILAFATIPPTVNQVEMNPAW------Q---Q-----RKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~------~---~-----~~~i~~~~~~gi~v~a~s 225 (263)
.++.+++. +++..-.-+..|..+ . + .+.+.+++++|+.+...-
T Consensus 76 di~~a~~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 76 DARIAVET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred HHHHHHHc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 88888875 444322322222211 1 1 356788999998766543
No 126
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=41.15 E-value=2.2e+02 Score=23.96 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=51.2
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCC
Q 024751 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVM 240 (263)
Q Consensus 161 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l 240 (263)
|.++.+...+-.+++--.-.-.|.+.++..+++..++-..-.-.....++-..|++.|+.+..=.|+++ + .--
T Consensus 46 Lp~i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~Cs--L-----~~~ 118 (217)
T PF02593_consen 46 LPKIPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCS--L-----EEN 118 (217)
T ss_pred ccCCCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccc--c-----CCC
Confidence 333555555555554433333344444444555444433221112235788889999999999999987 1 112
Q ss_pred CcHHHHHHHHHhCCCc
Q 024751 241 NNEALKQIAALQQGET 256 (263)
Q Consensus 241 ~~~~l~~ia~~~~~t~ 256 (263)
.+|.+.+.++++|+..
T Consensus 119 ~~p~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 119 GNPQIDEFAEYFGKPK 134 (217)
T ss_pred CChhHHHHHHHhCCce
Confidence 4688888888887654
No 127
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=41.07 E-value=3.1e+02 Score=25.78 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=89.9
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCC-ccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASR-EELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R-~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
.||.++.|-++|++..+.- +. +-++|.|-....-. -+++..-+++.-++++ +.++.+|.|......
T Consensus 112 VfGGe~kL~~aI~e~~~~~---~P~~~I~V~tTC~~~lI-GDDi~av~~~~~~~~~---~pVi~v~t~gf~G~s------ 178 (466)
T TIGR01282 112 VFGGDKKLKKAIDEIEELF---PLNKGISIQSECPVGLI-GDDIEAVAKKASKELG---KPVVPVRCEGFRGVS------ 178 (466)
T ss_pred ecCcHHHHHHHHHHHHHhC---CcccEEEEeCCChHHHh-ccCHHHHHHHHhhhcC---CcEEEEeCCCcCCch------
Confidence 4788888899998875543 33 66888887743211 1334433444433444 688899988543100
Q ss_pred CCccccccCCHHHHHHHHHH-HH----------HcCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccC--------
Q 024751 144 IPEEDLVSLDYNGVWEAMEE-CQ----------RHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMN-------- 202 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~-l~----------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~-------- 202 (263)
+ ..-...+.+++-+ +. ..+.|.-||-.++ +.+.+.++++..++++...-..-.
T Consensus 179 ~------~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~sg~~t~~~i~~~ 252 (466)
T TIGR01282 179 Q------SLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILLEEIGLRVVAQWSGDGTLNEMENA 252 (466)
T ss_pred h------hHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 0 0002223333332 22 1367888885554 456799999988876543221111
Q ss_pred ------CCCCc---HHHHHHHHh-CCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 203 ------PAWQQ---RKLVEFCKS-KSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 203 ------~~~~~---~~~i~~~~~-~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
+.... ..+.++.++ .||+++...|+|-. -.+..+++||+..|..
T Consensus 253 ~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~---------~T~~~Lr~ia~~~g~~ 306 (466)
T TIGR01282 253 PKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPT---------KIAESLRKIAEFFDDE 306 (466)
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHH---------HHHHHHHHHHHHHCch
Confidence 11111 124556655 49999988775420 1235677777777754
No 128
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=40.70 E-value=62 Score=27.64 Aligned_cols=28 Identities=4% Similarity=-0.113 Sum_probs=13.1
Q ss_pred cEEEeeCCCCCCCChhHHHHHHHHHHHHhC
Q 024751 90 ELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 90 ~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 119 (263)
.++|+--++ ...|+.+.+-+....+.++
T Consensus 155 ~i~l~DT~G--~~~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 155 RLRFADTVG--ILDPFTTYELIRRLRAATD 182 (259)
T ss_pred EEEeCCCCC--CCCHHHHHHHHHHHHHhcC
Confidence 344444443 2334555555555555444
No 129
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=40.68 E-value=2.3e+02 Score=24.12 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHH
Q 024751 107 VVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG-LTKSIGVSNFSPKKIET 185 (263)
Q Consensus 107 i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~ 185 (263)
-+..+-+.|.++|++++++-+ |.. ...-|+.++.+.+.+ .++..+.+..+.+.++.
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g~---p~~--------------------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~ 77 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVGI---PAM--------------------GEEEREAIRAIVALGLPARLIVWCRAVKEDIEA 77 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEec---CCC--------------------CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHH
Confidence 445555669999999988852 311 122355666766633 47777777777888888
Q ss_pred HHHhCCCCCeeeccccCCCC--------C------cHHHHHHHHhCCceEEEccCC
Q 024751 186 ILAFATIPPTVNQVEMNPAW--------Q------QRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 186 ~~~~~~~~~~~~q~~~~~~~--------~------~~~~i~~~~~~gi~v~a~spl 227 (263)
+.+. .++..-.-+..|..+ + -.+.+++|+++|+.+...-+.
T Consensus 78 a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 132 (259)
T cd07939 78 ALRC-GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED 132 (259)
T ss_pred HHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc
Confidence 7764 344222222222221 0 035788999999976644443
No 130
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=40.24 E-value=74 Score=22.38 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
+.+.|...++.|++ -+| ..++.+.+.......++.--+.++......+..+|++++|+++-..
T Consensus 3 i~~~l~~a~~~~~l-v~G-----~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 3 IYKLLKLARKAGRL-VKG-----IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHHHSEE-EES-----HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHHhcCCE-EEc-----hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 34456666666663 344 4667777787777777776666554433347789999999997643
No 131
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=39.86 E-value=2.8e+02 Score=24.92 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccCCC
Q 024751 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 158 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
++.+.+|++...+. ..|=|-++..++.++++...++ ++|+...-.- .-..+...|+.+|+.++..+.+.
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d--~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~ 299 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAAD--VFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLE 299 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCC--EEEEcccccCCHHHHHHHHHHHHHcCCceeeecchh
Confidence 56777787776655 6677888999999998876655 6666654432 22578999999999998765443
No 132
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=39.71 E-value=55 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=36.8
Q ss_pred cCCCHHHHHHHHHhCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEccCCCC
Q 024751 176 SNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 176 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+.++...+.++++...++ ++|+...-+ ..-..+.+.|+++|+.++..+. .+
T Consensus 3 ~~~~~~~~~~li~~~a~d--~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVD--IVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTTSCS--EEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcCCCC--EEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 457788889998876655 666665332 2236799999999999999997 54
No 133
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.91 E-value=88 Score=24.83 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCccEEEee-CCCCCCCChhHHHHHHHHHHHHhCCC
Q 024751 44 AMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREELFITT-KLWCSDAHRDLVVPALKKSLKTLQIE 121 (263)
Q Consensus 44 ~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~~~~~~~~~R~~~~I~t-K~~~~~~~~~~i~~~~~~sL~~Lg~~ 121 (263)
...-.++.|-+.||.+|=.|+.|| +-..+-+.+. | . =++++.| ..+....+...+.+.++.-|+..|.+
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g---~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G---D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c---C-ceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 344556777788999999999998 3332223222 1 1 2344444 44555555567778888999999853
No 134
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.56 E-value=2.9e+02 Score=24.73 Aligned_cols=67 Identities=7% Similarity=0.067 Sum_probs=48.8
Q ss_pred HHHHHHHHHHc--CCc-cEEEecCCCHHHHHHHHHhCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEEcc
Q 024751 157 VWEAMEECQRH--GLT-KSIGVSNFSPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 157 ~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~s 225 (263)
-++.+.+|++. -.| -..|=|.++...+.++++...++ ++|....-+ ..-.++.+.|+.+|+.++.+.
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~d--iv~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVD--VLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCC--EEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 46778888876 222 25566778999999999876555 777776543 223689999999999999874
No 135
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.55 E-value=3.2e+02 Score=25.22 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=66.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
-.||.++.+-++|++..+.- +.+-++|.|-..+.-. -+++..-+++. ++.+ ++++.++.|......
T Consensus 66 ~V~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-GdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~------ 131 (427)
T cd01971 66 IVFGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-GDDVGAVVSEF-QEGG---APIVYLETGGFKGNN------ 131 (427)
T ss_pred eEeCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-hcCHHHHHHHh-hhcC---CCEEEEECCCcCccc------
Confidence 35788888999998864432 4566777776643211 13344444443 4444 688999988543211
Q ss_pred CCccccccCCHHHHHHHHHH-HH------HcCCccEEEecC-------CCHHHHHHHHHhCCCCCeee
Q 024751 144 IPEEDLVSLDYNGVWEAMEE-CQ------RHGLTKSIGVSN-------FSPKKIETILAFATIPPTVN 197 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~-l~------~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~~~ 197 (263)
..-...++++|-+ +. +.+.|.-||..+ -+.+.+.++++..++++..+
T Consensus 132 -------~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 132 -------YAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred -------ccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 0113334444433 22 335688888642 24578999999888776544
No 136
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.41 E-value=1.5e+02 Score=29.36 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHc--CCccEEEecCCCHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH--GLTKSIGVSNFSPK 181 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~ 181 (263)
.+.+++-++.....-.....-+++|+..+.. ....+++|-+..++ +.+++|.+++....
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~L-------------------s~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------------TNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhc-------------------CHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 4666666665544333445668888866321 24567787777777 89999999998777
Q ss_pred HHHHHHHhC
Q 024751 182 KIETILAFA 190 (263)
Q Consensus 182 ~l~~~~~~~ 190 (263)
.+..+++.+
T Consensus 167 LlpTIrSRC 175 (700)
T PRK12323 167 IPVTVLSRC 175 (700)
T ss_pred hhhHHHHHH
Confidence 777777664
No 137
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=37.99 E-value=1.3e+02 Score=27.90 Aligned_cols=70 Identities=9% Similarity=0.019 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccC
Q 024751 156 GVWEAMEECQRH------GLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 156 ~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~sp 226 (263)
+.++.+.+|++. ..=-..+=|-++.+.+.++++....+ ++|+..+-+- .-.++.++|+++||.++..+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d--~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGH--MVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCC--EEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 456777777765 33334456677899999998876655 7777765432 336899999999999999776
Q ss_pred C
Q 024751 227 L 227 (263)
Q Consensus 227 l 227 (263)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 138
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.82 E-value=3e+02 Score=24.66 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHH-----------------HHHHHHHHhcCCCCCCccEEEeeCCCCCCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERAL-----------------GEAIAEALKLGLVASREELFITTKLWCSDA 102 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~l-----------------G~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 102 (263)
.+.+....+.+++-+.|+.+|-|.-.-.+-..+ -..|+.. +. ....++|+|-..
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~-A~----~gkPvilStGma---- 143 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKI-AR----FGKPVILSTGMA---- 143 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHH-Hh----cCCcEEEECCCC----
Confidence 678889999999999999998665432111111 1112222 11 344577777662
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
+.+.+..+++...+ -|.+.-++.++|+...+. .| .+ .--++++..|++.=. .-||+|.|+.-.
T Consensus 144 tl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP------~~--~~-------~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 144 TLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYP------AP--FE-------DVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred CHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCC------CC--cc-------cCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 45888888888753 343212699999875322 11 11 112345555554332 469999998654
No 139
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=37.66 E-value=1.5e+02 Score=21.26 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=55.4
Q ss_pred HHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCC---------------CCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 160 AMEECQRH-GLTKSIGVSNFSPKKIETILAFATI---------------PPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 160 ~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~---------------~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
.+..+.+. ..++-+|+++-+++..+.+.+..++ +.+++ .++.....+++..|-++|+.|+.
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I---~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVII---ATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEE---ESSGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEE---ecCCcchHHHHHHHHHcCCEEEE
Confidence 34455555 6677788888887777666554442 22221 11212235789999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 224 FSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 224 ~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
=.|++. ..-+-..+.+.++++++.
T Consensus 92 EKP~~~--------~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 92 EKPLAL--------TLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp ESSSSS--------SHHHHHHHHHHHHHHTSC
T ss_pred EcCCcC--------CHHHHHHHHHHHHHhCCE
Confidence 999984 223345688888888764
No 140
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.50 E-value=2.8e+02 Score=24.81 Aligned_cols=103 Identities=8% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCCCCChhHHHHHHHHHHHHhCCCcccE----------EEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHH-HH
Q 024751 98 WCSDAHRDLVVPALKKSLKTLQIEYVDL----------YLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEEC-QR 166 (263)
Q Consensus 98 ~~~~~~~~~i~~~~~~sL~~Lg~~~iDl----------~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~ 166 (263)
+...++.+.+.+-++. |.+.|+++|.+ +....+ ....++.++.+ ..
T Consensus 18 ~~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~----------------------~~~~~e~i~~~~~~ 74 (337)
T PRK08195 18 VRHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFG----------------------AHTDEEYIEAAAEV 74 (337)
T ss_pred CCCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCC----------------------CCCHHHHHHHHHHh
Q ss_pred cCCccEEEecCC---CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 167 HGLTKSIGVSNF---SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 167 ~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
....+...+... +.+.++.+.+ ..++..-+-..++-.+.-.+.+++++++|..+..+
T Consensus 75 ~~~~~~~~ll~pg~~~~~dl~~a~~-~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 75 VKQAKIAALLLPGIGTVDDLKMAYD-AGVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred CCCCEEEEEeccCcccHHHHHHHHH-cCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
No 141
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=37.43 E-value=3.1e+02 Score=24.75 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHH
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFSPKKIETI 186 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~ 186 (263)
+..+-+.|.++|++++++- +|.. -+.-|+.++.+.+.+. .+..+++.-+.+.++.+
T Consensus 25 k~~ia~~L~~~Gv~~IEvG---~p~~--------------------~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a 81 (365)
T TIGR02660 25 KLAIARALDEAGVDELEVG---IPAM--------------------GEEERAVIRAIVALGLPARLMAWCRARDADIEAA 81 (365)
T ss_pred HHHHHHHHHHcCCCEEEEe---CCCC--------------------CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHH
Confidence 3445566999998888874 3421 1233566777766643 67777777778888887
Q ss_pred HHhCCCCCeeeccccCCCCC--------c------HHHHHHHHhCCceEEE
Q 024751 187 LAFATIPPTVNQVEMNPAWQ--------Q------RKLVEFCKSKSIIVTA 223 (263)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~~--------~------~~~i~~~~~~gi~v~a 223 (263)
++. +++..-.-+..|..+. + .+.+++++++|+.+..
T Consensus 82 ~~~-g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 82 ARC-GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HcC-CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 764 3342222223332111 1 3678899999987654
No 142
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=37.40 E-value=2.5e+02 Score=25.46 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=61.8
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHHhCC-CCCee
Q 024751 125 LYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-------NFSPKKIETILAFAT-IPPTV 196 (263)
Q Consensus 125 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~~~~~ 196 (263)
-+.+|.|+...+ +.-.|... ....++..++.+...+... +.|-+- |.+.+..+++++... ++..+
T Consensus 215 AiSLHa~nd~lR--~~L~Pink----~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~V 287 (349)
T COG0820 215 AISLHAPNDELR--DQLMPINK----KYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKV 287 (349)
T ss_pred EEecCCCCHHHH--hhhhcccc----CCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceE
Confidence 356788864332 11222211 2236777888877765554 545432 556777777777654 55589
Q ss_pred eccccCCCCCc----------HHHHHHHHhCCceEEEccCCCC
Q 024751 197 NQVEMNPAWQQ----------RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 197 ~q~~~~~~~~~----------~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+-++||+.... ....+...++||.+....+-+.
T Consensus 288 NLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 288 NLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred EEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 99999987531 2466667789999998887764
No 143
>PLN02444 HMP-P synthase
Probab=37.11 E-value=3.5e+02 Score=26.26 Aligned_cols=133 Identities=12% Similarity=0.079 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHHcCCc-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEee--------CC--CCCCCChhHHH
Q 024751 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITT--------KL--WCSDAHRDLVV 108 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~t--------K~--~~~~~~~~~i~ 108 (263)
.+.++=.+-++.|.+.|-- ..|-+ ..|.-..+-+++=+. ..+=|-| |. ...+.+.+.+.
T Consensus 234 s~ie~EveK~~~A~~~GADTvMDLS-TGgdi~~iR~~Il~~---------spvPVGTVPIYqA~~~~~~~~~~lt~d~~~ 303 (642)
T PLN02444 234 SSIEEEVYKLQWATMWGADTVMDLS-TGRHIHETREWILRN---------SPVPVGTVPIYQALEKVDGIAENLTWEVFR 303 (642)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHc---------CCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 4555556667888888864 55654 233333333333211 0011111 11 11245566666
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q 024751 109 PALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILA 188 (263)
Q Consensus 109 ~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 188 (263)
+.+++..+ +-+|.+.+|.. -..+.++.++ + |..||-+-.-..+..++.
T Consensus 304 d~ieeQae----qGVDfmTIH~G------------------------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml 351 (642)
T PLN02444 304 ETLIEQAE----QGVDYFTIHAG------------------------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCL 351 (642)
T ss_pred HHHHHHHH----hCCCEEEEChh------------------------hHHHHHHHHh--C--cccCceeCCcHHHHHHHH
Confidence 66665544 34788999965 1334444444 3 667777666665555544
Q ss_pred hCCCCCeeeccccCCCCCc-HHHHHHHHhCCceEE
Q 024751 189 FATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVT 222 (263)
Q Consensus 189 ~~~~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~ 222 (263)
... .=|++... .++++.|++++|.+-
T Consensus 352 ~~~--------kENPlYe~FD~ileI~k~YDVtlS 378 (642)
T PLN02444 352 AYH--------KENFAYEHWDDILDICNQYDIALS 378 (642)
T ss_pred HcC--------CcCchHHHHHHHHHHHHHhCeeee
Confidence 322 11333322 567777777777764
No 144
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=37.07 E-value=81 Score=28.79 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhc--CC-CCCCccEEEeeCCCCCCCChhHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKL--GL-VASREELFITTKLWCSDAHRDLVVPALKKSLK 116 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~--~~-~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 116 (263)
..+.+..+.++.+++.|+.=. .|+++... +++..++++ +. + ..+.++.+ ..+...+.-.++
T Consensus 38 ~~pp~i~~Al~~rvdhGvfGY----~~~~~~~~-~ai~~w~~~r~~~~i-~~e~i~~~----------p~VVpgi~~~I~ 101 (388)
T COG1168 38 PTPPEIIEALRERVDHGVFGY----PYGSDELY-AAIAHWFKQRHQWEI-KPEWIVFV----------PGVVPGISLAIR 101 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCC----CCCCHHHH-HHHHHHHHHhcCCCC-CcceEEEc----------CcchHhHHHHHH
Confidence 346778899999999996432 35555443 344433222 11 1 12222222 223344444444
Q ss_pred HhCCCcccEEEeecCCC
Q 024751 117 TLQIEYVDLYLIHWPMS 133 (263)
Q Consensus 117 ~Lg~~~iDl~~lh~p~~ 133 (263)
.+- .-=|-++++.|..
T Consensus 102 ~~T-~~gd~Vvi~tPvY 117 (388)
T COG1168 102 ALT-KPGDGVVIQTPVY 117 (388)
T ss_pred HhC-cCCCeeEecCCCc
Confidence 442 3458888888743
No 145
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.75 E-value=2.5e+02 Score=23.46 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=57.9
Q ss_pred ccccCeeceecccc----C--------------------CChHHHHHHHHHHHHcCCcEEe-CCCCcCCHHHHHHHHHHH
Q 024751 25 HRKMPVIGLGSAVD----N--------------------IDESAMKSAVLESIKLGYRHFD-TASLYGTERALGEAIAEA 79 (263)
Q Consensus 25 g~~v~~iglG~~~~----~--------------------~~~~~~~~~l~~A~~~Gi~~~D-tA~~Ygse~~lG~al~~~ 79 (263)
|+.+|.|-+|-+.. + .+++++..+-++|.+.|+.++= +|+.---|+ + ++|.+.
T Consensus 93 gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeR-m-ell~~~ 170 (268)
T KOG4175|consen 93 GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDER-M-ELLVEA 170 (268)
T ss_pred CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHH-H-HHHHHh
Confidence 48899998887753 1 6789999999999999998773 444432233 2 344433
Q ss_pred HhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC
Q 024751 80 LKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 80 ~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg 119 (263)
...=+|+.+.++.... .+.+.+.+.+.|++..
T Consensus 171 -------adsFiYvVSrmG~TG~-~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 171 -------ADSFIYVVSRMGVTGT-RESVNEKLQSLLQRVR 202 (268)
T ss_pred -------hcceEEEEEecccccc-HHHHHHHHHHHHHHHH
Confidence 3344789999876543 4667777777777764
No 146
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=36.74 E-value=3.4e+02 Score=24.98 Aligned_cols=163 Identities=12% Similarity=-0.003 Sum_probs=89.3
Q ss_pred CCCcCC-HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCcccc
Q 024751 63 ASLYGT-ERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLR 141 (263)
Q Consensus 63 A~~Ygs-e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~ 141 (263)
.-.+|. ++.+-+++++..+.. ..+-++|.|-+...-. -+.+...++ +. ....++.+|.|...... .
T Consensus 69 ~iv~g~~~~~L~~~i~~~~~~~---~p~~I~V~stC~~e~i-GdDi~~~~~----~~--~~~~vv~v~tpgf~g~~-~-- 135 (416)
T cd01980 69 TLSTGKLFEDIREAIRKLADPP---AYTFIPVISLCVAETA-GVAEELLPK----QI--DGVRVILVRGPAFPIHS-H-- 135 (416)
T ss_pred hhccCchHHHHHHHHHHHhhcC---CCCEEEEeCCChhhhh-cCchhhhhc----cc--CCCeEEEecCCCccCCc-c--
Confidence 334565 788888998864332 4556778777643211 123333222 22 23578888888654211 0
Q ss_pred CCCCccccccCCHHHHHHHH-HHHH------HcCCccEEEecC-CCHHHHHHHHHhCCCCCeeeccccCCCC--------
Q 024751 142 NDIPEEDLVSLDYNGVWEAM-EECQ------RHGLTKSIGVSN-FSPKKIETILAFATIPPTVNQVEMNPAW-------- 205 (263)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l-~~l~------~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~~q~~~~~~~-------- 205 (263)
.........++ +.+. +.+.|.-||--+ -+.+.+.++++..++++.+. +.-..+.
T Consensus 136 ---------~~G~~~a~~~i~~~l~~~~~~~~~~~vniiG~~~~~d~~ei~~lL~~~Gl~~~~~-l~~~~~~el~~~~~A 205 (416)
T cd01980 136 ---------PEAKDVGAMLLLARFEDFDGPVAEPSLALLGEMFPADPVAIGSVLERMGLAAVPV-VPTREWRELYAAGDA 205 (416)
T ss_pred ---------hhHHHHHHHHHHHhhhccccCCCCCeEEEEccCCCCCHHHHHHHHHHcCCceeeE-eCCCCHHHHhhcccC
Confidence 00122222222 3333 236788888333 25678999999988876542 1211110
Q ss_pred ------C--cHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCch
Q 024751 206 ------Q--QRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETE 257 (263)
Q Consensus 206 ------~--~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~ 257 (263)
. .....++.+++|+.++.-.|.|-. -.+..++++|+..|+.++
T Consensus 206 ~~~i~~~~~~~~~a~~Le~~GvP~~~~~piG~~---------~td~~l~~la~~~g~~~~ 256 (416)
T cd01980 206 AAVAALHPFYTATIRELEEAGRPIVSGAPVGAD---------GTAAWLEAVGEALGLDMD 256 (416)
T ss_pred cEEEEeChhHHHHHHHHHHcCCceecCCCcCch---------HHHHHHHHHHHHhCcCch
Confidence 1 124566677889998755566530 235677888888887553
No 147
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.67 E-value=53 Score=26.25 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcC-CccEEEecCCC--HHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 154 YNGVWEAMEECQRHG-LTKSIGVSNFS--PKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
..+.+++|.+++..| +|-.+|..+.. ...+.+++ +++ +.+..|+-...-...+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~~--i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GVD--IKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T-E--EEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CCc--eEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 567888888888665 44444444433 45555555 333 4444554322225678888899998887
No 148
>PLN02363 phosphoribosylanthranilate isomerase
Probab=36.55 E-value=1.7e+02 Score=25.11 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred HhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCCC
Q 024751 117 TLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-NFSPKKIETILAFATIPP 194 (263)
Q Consensus 117 ~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~ 194 (263)
++|.|++=+++.. .|.. . ..+..+.+.+......++.+||. +-+.+.+.++++..+++
T Consensus 65 ~~GaD~iGfIf~~~SpR~------------------V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld- 124 (256)
T PLN02363 65 EAGADFIGMILWPKSKRS------------------I-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLE- 124 (256)
T ss_pred HcCCCEEEEecCCCCCCc------------------C-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCC-
Confidence 4899998886433 2211 1 12334444444333246789986 77888898888876654
Q ss_pred eeecccc
Q 024751 195 TVNQVEM 201 (263)
Q Consensus 195 ~~~q~~~ 201 (263)
++|++-
T Consensus 125 -~VQLHG 130 (256)
T PLN02363 125 -LVQLHG 130 (256)
T ss_pred -EEEECC
Confidence 888874
No 149
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.46 E-value=64 Score=27.65 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred ccccCeeceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCC
Q 024751 25 HRKMPVIGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSDA 102 (263)
Q Consensus 25 g~~v~~iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 102 (263)
|+++..-..-+.. .+++...++++.+.+.|...|--++.+| ....+.+.++.. |+.+-. .++..+.+
T Consensus 125 G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l--------~~~~~~-~~l~~H~H 193 (263)
T cd07943 125 GMDVVGFLMMSHM--ASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRAL--------REALDP-TPVGFHGH 193 (263)
T ss_pred CCeEEEEEEeccC--CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHH--------HHhCCC-ceEEEEec
Q ss_pred ChhHHHHHHHHHHHHh--CCCccc
Q 024751 103 HRDLVVPALKKSLKTL--QIEYVD 124 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~L--g~~~iD 124 (263)
+..-.++-+++..+ |.+++|
T Consensus 194 --n~~GlA~AN~laAi~aGa~~vd 215 (263)
T cd07943 194 --NNLGLAVANSLAAVEAGATRID 215 (263)
T ss_pred --CCcchHHHHHHHHHHhCCCEEE
No 150
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=36.38 E-value=3.1e+02 Score=24.41 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=84.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCC----------CcC-----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCCh
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTAS----------LYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHR 104 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg-----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~ 104 (263)
.+++...+.-+.+-+.|+..||--- .+| +...+.+.++...+.- . ++-|+.|+-....+.
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av---~--~iPVTVKiRlG~d~~ 150 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV---G--DIPVTVKIRLGWDDD 150 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh---C--CCCeEEEEecccCcc
Confidence 5678888889999999998888533 234 4777888888763321 2 567888873332222
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEecC-CCHHH
Q 024751 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSN-FSPKK 182 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~-~~~~~ 182 (263)
+.....+.+.++.-| +|.+.+|--+....+ ....-|+.+.++++.=. |--||=.+ ++.+.
T Consensus 151 ~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y---------------~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~ 212 (323)
T COG0042 151 DILALEIARILEDAG---ADALTVHGRTRAQGY---------------LGPADWDYIKELKEAVPSIPVIANGDIKSLED 212 (323)
T ss_pred cccHHHHHHHHHhcC---CCEEEEecccHHhcC---------------CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHH
Confidence 334445566666666 689999976543321 01245778888887765 55555444 67888
Q ss_pred HHHHHHhCCCC
Q 024751 183 IETILAFATIP 193 (263)
Q Consensus 183 l~~~~~~~~~~ 193 (263)
..+.++....+
T Consensus 213 a~~~l~~tg~D 223 (323)
T COG0042 213 AKEMLEYTGAD 223 (323)
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 151
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=36.37 E-value=3.2e+02 Score=24.60 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHcC---CcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCC--CCCCChhHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLG---YRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLW--CSDAHRDLVVPALKKS 114 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~--~~~~~~~~i~~~~~~s 114 (263)
.+.++-.+++....+.- +-.+|..+..++- -..+.+.+ + ...-++|.+|+- ......+.+.+-+.+.
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~---~~~l~~~~--~---~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL---IPELKRFV--G---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc---cHHHHHHh--C---CCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 44555666555554322 3466866555421 01122221 1 355688999983 2333345566666666
Q ss_pred HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH-HHHHH
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI-ETILA 188 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l-~~~~~ 188 (263)
++..|....+++.+..-.. ..+.+.++.+.++.+.+.+-.+|.+|.....+ ..++.
T Consensus 120 ~k~~g~~~~~i~~vSAk~g------------------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 120 AKELGLKPVDIILVSAKKG------------------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred HHHcCCCcCcEEEecCCCC------------------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHh
Confidence 7777765446666543321 12788888888887777888999999987654 44444
No 152
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=36.35 E-value=2.5e+02 Score=23.22 Aligned_cols=67 Identities=6% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCC-CCCeeec---------------cc---cCC----CC-----CcHHHHH
Q 024751 161 MEECQRHGLTKSIGVSNFSPKKIETILAFAT-IPPTVNQ---------------VE---MNP----AW-----QQRKLVE 212 (263)
Q Consensus 161 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q---------------~~---~~~----~~-----~~~~~i~ 212 (263)
++.+++.|....+=+++|+++.+.++.+... ++..+.. .. +++ +. ...++++
T Consensus 109 ~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (226)
T cd08568 109 LEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLR 188 (226)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHH
Confidence 3344456777788899999999988877543 1111100 00 011 00 0157888
Q ss_pred HHHhCCceEEEccCC
Q 024751 213 FCKSKSIIVTAFSPL 227 (263)
Q Consensus 213 ~~~~~gi~v~a~spl 227 (263)
.|+++|+.+.+|.+=
T Consensus 189 ~~~~~G~~v~~WTvn 203 (226)
T cd08568 189 LLRKLGLKIVLWTVN 203 (226)
T ss_pred HHHHCCCEEEEEcCC
Confidence 999999999999653
No 153
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.22 E-value=99 Score=25.79 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCC---ccEEEecCC-CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 157 VWEAMEECQRHGL---TKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 157 ~~~~l~~l~~~G~---ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
..+.+++++++-. =-.||..+. +.++++++++.+- ++.+ +|. -..+++++|+++|+.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fiv-----sP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIV-----SPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEEC
Confidence 4456666655421 135888764 5788888887543 3322 332 236888899988888775
No 154
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.09 E-value=3e+02 Score=25.16 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHHhCC-C---CCeeeccccCCCCC-----c-----HHHHH
Q 024751 153 DYNGVWEAMEECQ-RHGL---TKSIGVS--NFSPKKIETILAFAT-I---PPTVNQVEMNPAWQ-----Q-----RKLVE 212 (263)
Q Consensus 153 ~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~---~~~~~q~~~~~~~~-----~-----~~~i~ 212 (263)
.++++++++.++. +.|+ |+++=+. |.+.+.++++.+..+ . ...++-++||+... . ..+.+
T Consensus 263 ~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~ 342 (373)
T PRK14459 263 KVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVR 342 (373)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHH
Confidence 3788888877766 4454 4445444 445555555444332 2 45688899998532 1 34677
Q ss_pred HHHhCCceEEEccCCCC
Q 024751 213 FCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 213 ~~~~~gi~v~a~spl~~ 229 (263)
..+++||.+......|.
T Consensus 343 ~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 343 RLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred HHHHCCCeEEeeCCCCc
Confidence 78999999999888764
No 155
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=36.00 E-value=1.9e+02 Score=21.70 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC---CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQI---EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~---~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (263)
+|=-+.|+-|+......+..+++.+.+.++.+.. ...|++++-.+.... .+..+..+.|..
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~----------------~~~~~l~~~l~~ 110 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE----------------CNYEQFLQELEQ 110 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc----------------CCHHHHHHHHHH
Confidence 4555677777665566778999999999886632 357999999875432 236777777777
Q ss_pred HHHc
Q 024751 164 CQRH 167 (263)
Q Consensus 164 l~~~ 167 (263)
|.++
T Consensus 111 ll~k 114 (122)
T PRK03031 111 LLIQ 114 (122)
T ss_pred HHHH
Confidence 6544
No 156
>PRK06683 hypothetical protein; Provisional
Probab=35.93 E-value=80 Score=22.01 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=33.7
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 161 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
++++++.|++ -+| ..+..+.++....+.+++--..+.. ....+.+.|++++|+++-+.
T Consensus 3 ~~~~~~agk~-v~G-----~~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 3 YQKVSNAENV-VVG-----HKRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred hHHHHhCCCE-EEc-----HHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEEC
Confidence 3455566653 222 3556666666666655554443321 12567888888888887655
No 157
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=35.78 E-value=1.6e+02 Score=21.62 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=32.4
Q ss_pred ecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCC
Q 024751 175 VSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl 227 (263)
.+..+.+.+..++....++..++=..-+......++.++++++||++..|..-
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 44556777777766532333333222223233478899999999999887654
No 158
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=35.25 E-value=3e+02 Score=24.58 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCC
Q 024751 158 WEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 158 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
++.+.++++.-.+. +.|=|-++...+.++++...++ ++|+....+---.++++.|+++|+.++..|.+.+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~d--vi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~es 243 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAAD--VAVLKVAPLGGVRAALDIAEQIGLPVVVSSALDT 243 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCC--EEEeCcchhCCHHHHHHHHHHcCCcEEEeCCccc
Confidence 45666665553332 3344456677777777765544 6666665554446788899999999998877754
No 159
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.15 E-value=94 Score=29.13 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC------------------CCChhHHHHHHHHHHHHhCCCcccEEEee
Q 024751 68 TERALGEAIAEALKLGLVASREELFITTKLWCS------------------DAHRDLVVPALKKSLKTLQIEYVDLYLIH 129 (263)
Q Consensus 68 se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~------------------~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh 129 (263)
..+.+-++-++.+... -+-++++++-++.- +.+.+.| -.||.+.|+|..
T Consensus 149 TyeT~~~~~r~h~~gd---L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~~--- 215 (561)
T COG2987 149 TYETFAEAGRQHFGGD---LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDEI--- 215 (561)
T ss_pred hHHHHHHHHHHhcCCC---ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhhh---
Confidence 5566666667665433 37778888887431 1222222 356667787742
Q ss_pred cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC-CCCCeeeccccC
Q 024751 130 WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA-TIPPTVNQVEMN 202 (263)
Q Consensus 130 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~~~q~~~~ 202 (263)
..+++++++-.++..++|+-.+||+-..-.+.++++++.. .++.+.-|...|
T Consensus 216 ---------------------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 216 ---------------------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred ---------------------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 1237899999999999999999999999899999999864 356566777765
No 160
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=35.12 E-value=3.5e+02 Score=24.56 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCC---cHHHHHHHHhCCceEEEccCCCC
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
...+..+..+...+.++-.-+...+.+.++++++. +.+.++....-||... -..+.+.|+++|+.++.-...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 33444555555555455554545567777777642 3454444444455432 25789999999998887776653
No 161
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=34.92 E-value=3.1e+02 Score=24.02 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHhC-----CCCCeeeccccCCCCCc------HHHHHHHHhCCceEEEccCCC
Q 024751 177 NFSPKKIETILAFA-----TIPPTVNQVEMNPAWQQ------RKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 177 ~~~~~~l~~~~~~~-----~~~~~~~q~~~~~~~~~------~~~i~~~~~~gi~v~a~spl~ 228 (263)
..+.+.+++.++.. +.+..+.-...||.-.- .+++++|+++++-++.--..+
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeecee
Confidence 55788888888874 22334444444443321 467888999999998766554
No 162
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=34.92 E-value=1.5e+02 Score=25.41 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=50.0
Q ss_pred HHHHHHHcCCccEEEe-cCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCCC
Q 024751 160 AMEECQRHGLTKSIGV-SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 160 ~l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~~ 229 (263)
.|.+-.++|+. .+|+ .......+.+++...+++++++=.+..+++.. ..++..|+..|+..+..-|-..
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~ 80 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE 80 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 34454555764 4554 34444567777788889999999999988765 5788999999999888776654
No 163
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=34.84 E-value=1.4e+02 Score=22.54 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
..+.+.|.-.++.|++. .| ..+..+.++......++.--..++.+-...+..+|++++|+++-.
T Consensus 16 ~ki~~lL~la~ragklv-~G-----~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~ 79 (122)
T PRK04175 16 EKALEAVEKARDTGKIK-KG-----TNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV 79 (122)
T ss_pred HHHHHHHHHHHHcCCEe-Ec-----HHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 44667777778888762 33 466777777777777777666666443457888999999997654
No 164
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=34.78 E-value=1.5e+02 Score=21.78 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=32.7
Q ss_pred ecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCC
Q 024751 175 VSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 175 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl 227 (263)
++..+.+.+..++... ++..++=..-+......++.++++++||++..|..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 3455677777776642 333333333333334578899999999999987654
No 165
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=34.73 E-value=61 Score=23.99 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG 67 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 67 (263)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5677788999999999999999999984
No 166
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.61 E-value=3.4e+02 Score=24.39 Aligned_cols=147 Identities=11% Similarity=0.026 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcC-C----HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYG-T----ERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-s----e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 115 (263)
++++..+.++.+.+.|++.|=.- .++ . ....=+++|+.+ .+++.|..-.. ..++.+... +.+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~-------G~~~~l~vDan-~~~~~~~A~----~~~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAV-------GPDMRLMHDGA-HWYSRADAL----RLG 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHh-------CCCCeEEEECC-CCcCHHHHH----HHH
Confidence 56777888888899999987542 121 1 122233444431 22334433332 223333322 222
Q ss_pred HHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCC-HHHHHHHHHhCCCC
Q 024751 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFS-PKKIETILAFATIP 193 (263)
Q Consensus 116 ~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~ 193 (263)
+.|. .+++.++..|.+ ..-++.+.+|+++-.+. ..|=+-++ ..++.++++...++
T Consensus 210 ~~l~--~~~l~~iEeP~~---------------------~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d 266 (368)
T cd03329 210 RALE--ELGFFWYEDPLR---------------------EASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATD 266 (368)
T ss_pred HHhh--hcCCCeEeCCCC---------------------chhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCC
Confidence 2232 235556665521 12346777888875554 22334566 88899998876554
Q ss_pred CeeeccccCCC---CCcHHHHHHHHhCCceEEEcc
Q 024751 194 PTVNQVEMNPA---WQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 194 ~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a~s 225 (263)
++|...+.+ ..-.++...|+++|+.++..+
T Consensus 267 --~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 267 --FLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred --EEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 777766543 233689999999999998754
No 167
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=34.56 E-value=5.4e+02 Score=26.64 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=63.7
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh-CCCcccEEEeecCCCCCCCccccCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL-QIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L-g~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
.||.++.+-++|++..+.- +.+-++|.|-..+.-. -+++..-+++.-++. ....+.++.++.|......
T Consensus 552 VfGG~~~L~~~I~~~~~~~---~p~~I~V~tTc~~eiI-GDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~------ 621 (917)
T PRK14477 552 IFGGWENLKQGILRVIEKF---KPKVIGVMTTGLTETM-GDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSL------ 621 (917)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEECCchHhhh-hcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCH------
Confidence 5788888888888764332 4556777777643211 133433333332221 1123689999988653210
Q ss_pred CCccccccCCHHHHHHHHH-HH-----HHcCCccEEEecCC---CHHHHHHHHHhCCCCCee
Q 024751 144 IPEEDLVSLDYNGVWEAME-EC-----QRHGLTKSIGVSNF---SPKKIETILAFATIPPTV 196 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~-~l-----~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~ 196 (263)
..-...++++|- .+ +..++|.-||-++. +.+.+.++++..++++.+
T Consensus 622 -------~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 622 -------QEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred -------HHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 011333343432 22 23567888875543 456788888888877644
No 168
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=34.55 E-value=2.2e+02 Score=22.09 Aligned_cols=45 Identities=4% Similarity=0.087 Sum_probs=34.2
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHh--CCCcccEEEeecCC
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTL--QIEYVDLYLIHWPM 132 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L--g~~~iDl~~lh~p~ 132 (263)
.|=-+.|+-|++. ...+..+++.+.++++.. .....|++++....
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~ 92 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGN 92 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccc
Confidence 4666888888754 566788999999988765 33568999998774
No 169
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=34.16 E-value=56 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=16.7
Q ss_pred CCcHHHHHHHHHhCCCchhhcc
Q 024751 240 MNNEALKQIAALQQGETERELG 261 (263)
Q Consensus 240 l~~~~l~~ia~~~~~t~~~~~~ 261 (263)
.-.|..+++|+++|+...+|-|
T Consensus 4 ~asP~ar~la~e~gidl~~v~g 25 (39)
T PF02817_consen 4 KASPAARKLAAELGIDLSQVKG 25 (39)
T ss_dssp CCSHHHHHHHHHTT--GGGSSS
T ss_pred ccCHHHHHHHHHcCCCcccccc
Confidence 3458999999999999998865
No 170
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.80 E-value=3.5e+02 Score=24.68 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=49.5
Q ss_pred CHHHHHHHHHH-HHHcC---CccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCCc----------HHHHHHHH
Q 024751 153 DYNGVWEAMEE-CQRHG---LTKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQQ----------RKLVEFCK 215 (263)
Q Consensus 153 ~~~~~~~~l~~-l~~~G---~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~i~~~~ 215 (263)
.++++++++.+ +.+.| +|+++=+. |.+.+.+.++.+... ....++-++||++... ..+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 47788888875 44555 23444343 455656666666543 3455777888876431 34667788
Q ss_pred hCCceEEEccCCCC
Q 024751 216 SKSIIVTAFSPLGA 229 (263)
Q Consensus 216 ~~gi~v~a~spl~~ 229 (263)
++|+.+......|.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 99999999888764
No 171
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=33.77 E-value=1e+02 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=25.7
Q ss_pred cccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 024751 122 YVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKI 183 (263)
Q Consensus 122 ~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 183 (263)
.+|.+++|..+. .+..+.+.+......++.+|++++...++
T Consensus 73 ~~d~Vqlhg~e~---------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---------------------PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---------------------HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 379999996521 12233444433456889999998865544
No 172
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=33.50 E-value=87 Score=28.65 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCC----------CCCC----hhHHHHHHHHHHHHhCCCcccEEEeecCCC
Q 024751 68 TERALGEAIAEALKLGLVASREELFITTKLWC----------SDAH----RDLVVPALKKSLKTLQIEYVDLYLIHWPMS 133 (263)
Q Consensus 68 se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~----------~~~~----~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~ 133 (263)
++..+.+.+++. ...=+||-||+-. ..++ .+.+++.+.+.|++-|+....+|++.+.+.
T Consensus 129 ndv~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 577778888876 4556889999821 1223 356777888888999999999999987643
No 173
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=33.45 E-value=3.6e+02 Score=24.32 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 024751 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIE 184 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 184 (263)
+...+|+.+ |++.| .|++=+--| ..+..+++.+.+++=.+=-|+=-.|+...+.
T Consensus 36 ~aTv~QI~~-L~~aG---~dIVRvtv~----------------------~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~ 89 (361)
T COG0821 36 EATVAQIKA-LERAG---CDIVRVTVP----------------------DMEAAEALKEIKQRLNVPLVADIHFDYRLAL 89 (361)
T ss_pred HHHHHHHHH-HHHcC---CCEEEEecC----------------------CHHHHHHHHHHHHhCCCCEEEEeeccHHHHH
Confidence 444444433 56667 477777766 3566788999888888888887788866555
Q ss_pred HHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 185 TILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 185 ~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
+..+.+--+..+|.-++.--.+-.++++.|+++|+++=.
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 555543222223333332222236899999999998755
No 174
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=33.38 E-value=3.6e+02 Score=24.30 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
.+..++|.+.++.=.|=-|+=-.|+.......++.+--+..+|.-++.--..-.++++.|+++|+++=.
T Consensus 58 ~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 58 RESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred HHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 567788888888766666666678766555555544334434444443222226799999999998865
No 175
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=33.30 E-value=4.2e+02 Score=25.03 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHH-HcCCcEEeCCCCc-C-CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESI-KLGYRHFDTASLY-G-TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLK 116 (263)
Q Consensus 40 ~~~~~~~~~l~~A~-~~Gi~~~DtA~~Y-g-se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 116 (263)
.+++...+-++... +.|+++|.-++.- . +.+.+-+.++..++.+. ..-...+.+.+.....+ +.+-+.++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~--l~i~w~~~~r~~~i~~d-----~ell~~l~ 294 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNP--ISVTWGINTRVTDIVRD-----ADILHLYR 294 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCC--CCeEEEEecccccccCC-----HHHHHHHH
Confidence 56777777777776 4699887544432 2 44444555555432220 01112233333211112 22333445
Q ss_pred HhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHhCC-
Q 024751 117 TLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS----IGVSNFSPKKIETILAFAT- 191 (263)
Q Consensus 117 ~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~- 191 (263)
+.|..++ .+- .....+. .. ..-......++..++++.+++.|..-. +|+-+.+.+.+.+-++...
T Consensus 295 ~aG~~~v---~iG-iES~~~~-~L-----~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~ 364 (497)
T TIGR02026 295 RAGLVHI---SLG-TEAAAQA-TL-----DHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLD 364 (497)
T ss_pred HhCCcEE---EEc-cccCCHH-HH-----HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5565432 221 1111000 00 000012346778899999999997543 3556677777766666432
Q ss_pred CCCeeeccccCCCCCcHHHHHHHHhCCc
Q 024751 192 IPPTVNQVEMNPAWQQRKLVEFCKSKSI 219 (263)
Q Consensus 192 ~~~~~~q~~~~~~~~~~~~i~~~~~~gi 219 (263)
.+|...++..-...+..++.+.+++++.
T Consensus 365 l~~~~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 365 WDPDQANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred cCCCceEEEEecCCCCcHHHHHHHhhcc
Confidence 3443333322112345678888877654
No 176
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=33.16 E-value=3.1e+02 Score=23.46 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=43.0
Q ss_pred HHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 157 VWEAMEECQRH-GLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 157 ~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
....++.+++. +. -|.+=+++++.++++++.+ . +.+|-+. ... ..++++.++++|..++.+.
T Consensus 63 l~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G-~-~iINsis--~~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 63 VVPVIKALRDQPDV--PISVDTYRAEVARAALEAG-A-DIINDVS--GGQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-C-CEEEECC--CCC-CchhHHHHHHcCCcEEEEe
Confidence 44555566655 43 3788899999999999873 3 3344332 222 4578999999999999954
No 177
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.02 E-value=45 Score=21.71 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.7
Q ss_pred CceEEEccCCCCCCCCCCCCCCCCcHH-HHHHHHHhCC
Q 024751 218 SIIVTAFSPLGAVGSSWGTNQVMNNEA-LKQIAALQQG 254 (263)
Q Consensus 218 gi~v~a~spl~~~G~l~~~~~~l~~~~-l~~ia~~~~~ 254 (263)
|...+.||.+.. |.+...+.+..+|. .+++|++++-
T Consensus 11 G~itl~ys~~~~-GWl~Pgg~vi~NPlkAqR~AE~~n~ 47 (60)
T PF07026_consen 11 GTITLPYSHFKN-GWLMPGGKVITNPLKAQRLAEELNS 47 (60)
T ss_pred eEEEEEEEeccc-eeecCCCeeEcCHHHHHHHHHHHHh
Confidence 567788999986 88877777777765 4788888763
No 178
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=32.99 E-value=3.1e+02 Score=23.43 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcC-CccEEEecCCCH------HHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEE-E
Q 024751 152 LDYNGVWEAMEECQRHG-LTKSIGVSNFSP------KKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVT-A 223 (263)
Q Consensus 152 ~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~------~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~-a 223 (263)
......++.+++++++. .+.-+.++-+|+ +..-+.+..++++-.++ +.-+.....++++.|+++|+..+ .
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii--pDlp~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV--ADLPLEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE--CCCChHHHHHHHHHHHHCCCcEEEE
Confidence 45677888888888663 444455555554 44444444555543332 23343444678999999997744 5
Q ss_pred ccCCC
Q 024751 224 FSPLG 228 (263)
Q Consensus 224 ~spl~ 228 (263)
.+|-.
T Consensus 147 v~P~T 151 (256)
T TIGR00262 147 VAPNA 151 (256)
T ss_pred ECCCC
Confidence 55543
No 179
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=32.98 E-value=3.7e+02 Score=24.24 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCcEEeCCCCcC------------CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHH
Q 024751 47 SAVLESIKLGYRHFDTASLYG------------TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKS 114 (263)
Q Consensus 47 ~~l~~A~~~Gi~~~DtA~~Yg------------se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~s 114 (263)
+.++...++|+|.+...--=+ +.+.+-++++...+.|+ +.+-+-.=++.+..+.+.+++.++..
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~----~~v~~dli~GlPgqt~~~~~~tl~~~ 184 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGF----EHVNLDLIYGTPGESDDDWRASLDAA 184 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC----CcEEEEEeccCCCCCHHHHHHHHHHH
Confidence 445555567999875433221 33344455555433332 12222222344667778887777755
Q ss_pred HHHhCCCcccEEEeecCCCCCCCcc----ccCCCCccccccCCHHHHHHHH-HHHHHcCCccEEEecCCCH
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEK----LRNDIPEEDLVSLDYNGVWEAM-EECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~~l~~~G~ir~iGvs~~~~ 180 (263)
+ .++.+++.+|.+.-. +..+-.. -..+..++ ....+.+... +.|.+.|. ..+++|||..
T Consensus 185 ~-~l~~~~i~~y~l~~~-~gT~l~~~~~~g~~~~~~~----~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~ 248 (375)
T PRK05628 185 L-EAGVDHVSAYALIVE-DGTALARRVRRGELPAPDD----DVLADRYELADARLSAAGF-DWYEVSNWAR 248 (375)
T ss_pred H-hcCCCEEEeeeeecC-CCChHHHHhhcCCCCCCCh----HHHHHHHHHHHHHHHHcCC-CeeeeccccC
Confidence 4 589999998887622 1110000 00000000 0122333343 44667777 5689999864
No 180
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.93 E-value=3.6e+02 Score=24.13 Aligned_cols=115 Identities=13% Similarity=0.046 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHH-----------------HHHHHHHHhcCCCCCCccEEEeeCCCCCCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERAL-----------------GEAIAEALKLGLVASREELFITTKLWCSDA 102 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~l-----------------G~al~~~~~~~~~~~R~~~~I~tK~~~~~~ 102 (263)
.+.++..++.+++-+.|+.++-|.-.-.+-..+ -..|+.. +. ....+.|+|=..
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~v-a~----~gkPvilstG~~---- 144 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYV-AK----TGKPIIMSTGIA---- 144 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHH-Hh----cCCcEEEECCCC----
Confidence 567777888899999999998665432211111 1122222 11 344466666552
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
+.+.+..+++...+ -|. -|+.++|+...+. .| .. .--+.++..|++.=. .-||+|.|+.-.
T Consensus 145 t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP------~~--~~-------~~nL~~i~~lk~~f~-~pVG~SDHt~G~ 205 (327)
T TIGR03586 145 TLEEIQEAVEACRE-AGC--KDLVLLKCTSSYP------AP--LE-------DANLRTIPDLAERFN-VPVGLSDHTLGI 205 (327)
T ss_pred CHHHHHHHHHHHHH-CCC--CcEEEEecCCCCC------CC--cc-------cCCHHHHHHHHHHhC-CCEEeeCCCCch
Confidence 45788888877653 342 4799999865431 11 11 112345555554433 469999998544
No 181
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.66 E-value=2.1e+02 Score=28.97 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHc--CCccEEEecCCCHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH--GLTKSIGVSNFSPK 181 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~ 181 (263)
.+.+++-++...........-+|+|...+.. ....+++|-+..++ ..+++|-++|....
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------------T~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHML-------------------TNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhC-------------------CHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 3556666655443322234567888765321 23567777777766 58999999998766
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCce
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSII 220 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~ 220 (263)
.+..+++.+ .+++|..+... ..+...|++.||.
T Consensus 162 Ip~TIrSRC------q~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 162 IPVTVLSRC------LQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred ccchhhhhe------EEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 666666543 34455544432 2344456655554
No 182
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.55 E-value=1.4e+02 Score=28.86 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh-CCCcccEEEeecCCCCCCCccccCCC
Q 024751 68 TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL-QIEYVDLYLIHWPMSAKPSEKLRNDI 144 (263)
Q Consensus 68 se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L-g~~~iDl~~lh~p~~~~~~~~~~~~~ 144 (263)
+.+.++++|. |.. +|+++.|.--... ++ +-+..||+|| |+.|+.-+.+-|..+..+.+|...|.
T Consensus 634 sGkEF~~aLG-----GN~-pREQFTvVmLTYE----Re---~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPd 698 (907)
T KOG2264|consen 634 SGKEFSKALG-----GNR-PREQFTVVMLTYE----RE---AVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPD 698 (907)
T ss_pred chHHHHHHhc-----CCC-ccceEEEEEEEeh----HH---HHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcC
Confidence 7788888887 434 8998877654421 22 3477899888 88999999999987766655555553
No 183
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=32.46 E-value=4.3e+02 Score=24.88 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=87.5
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
-.||.++.|-++|.+..+.- +.+-++|.+-..+.-. -+++..-+++.-++++ +.++.++.+..... .
T Consensus 99 vVfGg~~kL~~~I~ei~~~~---~P~~I~V~tTC~~~lI-GdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~---~--- 165 (475)
T PRK14478 99 VVFGGEKKLFKAIDEIIEKY---APPAVFVYQTCVVALI-GDDIDAVCKRAAEKFG---IPVIPVNSPGFVGN---K--- 165 (475)
T ss_pred eeeCCHHHHHHHHHHHHHhc---CCCEEEEeCCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEECCCcccc---h---
Confidence 35788889999998875542 4556777777643211 1233333333333444 67888887743211 0
Q ss_pred CCccccccCCHHHHHHHHHH-HH--------HcCCccEEEecCCC--HHHHHHHHHhCCCCCeeeccccC----------
Q 024751 144 IPEEDLVSLDYNGVWEAMEE-CQ--------RHGLTKSIGVSNFS--PKKIETILAFATIPPTVNQVEMN---------- 202 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~-l~--------~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~---------- 202 (263)
..-...++++|-+ +. ..+.|.-||-.++. .+.+.++++..++++...-....
T Consensus 166 -------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~ 238 (475)
T PRK14478 166 -------NLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASAHR 238 (475)
T ss_pred -------hhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhccc
Confidence 0113444444433 32 24568888866544 46789999988876543222111
Q ss_pred ----CCCCc---HHHHHHHHhC-CceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHh
Q 024751 203 ----PAWQQ---RKLVEFCKSK-SIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQ 252 (263)
Q Consensus 203 ----~~~~~---~~~i~~~~~~-gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~ 252 (263)
+.... ..+.++.+++ |++++.-+|+|- --.+..+++|++..
T Consensus 239 A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~---------~~T~~~l~~la~~~ 287 (475)
T PRK14478 239 ARANMMVCSGAMINLARKMEERYGIPFFEGSFYGI---------EDTSDSLRQIARLL 287 (475)
T ss_pred CcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcH---------HHHHHHHHHHHHHH
Confidence 10101 1244444444 999887665442 01245788999888
No 184
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=32.19 E-value=78 Score=26.31 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred eeccccCCCCCcHHHHHHHH---hCCceEEEccCCCCCCCCCCC---------------CCCCCcHHHHHHHHHhCCCch
Q 024751 196 VNQVEMNPAWQQRKLVEFCK---SKSIIVTAFSPLGAVGSSWGT---------------NQVMNNEALKQIAALQQGETE 257 (263)
Q Consensus 196 ~~q~~~~~~~~~~~~i~~~~---~~gi~v~a~spl~~~G~l~~~---------------~~~l~~~~l~~ia~~~~~t~~ 257 (263)
+|.+++.++..-..++.-+. +.|=.++.|+||...|.++.. .-+-+-..+.++|.++|..-.
T Consensus 109 ~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 109 INMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred hhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccC
Confidence 45666666555455555544 346679999999987776521 112334679999999998766
Q ss_pred hhc
Q 024751 258 REL 260 (263)
Q Consensus 258 ~~~ 260 (263)
+++
T Consensus 189 ~~~ 191 (204)
T PF06080_consen 189 EDI 191 (204)
T ss_pred ccc
Confidence 554
No 185
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.10 E-value=1.2e+02 Score=24.99 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
.+.++.+.+-.. + -.||..+. +.++++++++.+- ++.+ +|. -..+++++|+++|+.++.
T Consensus 47 ~~~I~~l~~~~p-~--~~vGAGTV~~~e~a~~a~~aGA-~Fiv-----SP~-~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 47 LEAIEALRKEFP-D--LLVGAGTVLTAEQAEAAIAAGA-QFIV-----SPG-FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHT-T--SEEEEES--SHHHHHHHHHHT--SEEE-----ESS---HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCC-C--CeeEEEeccCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCcccC
Confidence 344444443332 2 45888774 6788888888653 3333 231 247899999999999886
No 186
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=31.68 E-value=2.3e+02 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcC
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYG 67 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg 67 (263)
+....+++..++..+..--|.- .|+
T Consensus 56 ~~~Vldam~~~~~~~~~nPh~~-~y~ 80 (428)
T KOG1549|consen 56 DPRVLDAMLPYLLEYLGNPHSR-SYG 80 (428)
T ss_pred CHHHHHHHHHHHHHhhcCCCcc-ccc
Confidence 4456777777777766555444 455
No 187
>TIGR00035 asp_race aspartate racemase.
Probab=31.65 E-value=2.4e+02 Score=23.47 Aligned_cols=82 Identities=13% Similarity=-0.011 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH-H
Q 024751 105 DLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK-I 183 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~-l 183 (263)
+.+++-++.+=.+.+.++++.+++++|+..++.... . .+....-.....+.++.|.+.| +..|-++.++... +
T Consensus 17 ~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~----~-~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 17 ELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYI----L-GRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHH----h-cCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 445555555556788899999999998643221000 0 0001112455666777777765 7999998887655 5
Q ss_pred HHHHHhCCC
Q 024751 184 ETILAFATI 192 (263)
Q Consensus 184 ~~~~~~~~~ 192 (263)
+++.+...+
T Consensus 91 ~~l~~~~~i 99 (229)
T TIGR00035 91 EDIQKAIGI 99 (229)
T ss_pred HHHHHhCCC
Confidence 555544443
No 188
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=31.62 E-value=3.4e+02 Score=24.54 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHH-cCC---ccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCCc----------HHHHHHHHh
Q 024751 154 YNGVWEAMEECQR-HGL---TKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQQ----------RKLVEFCKS 216 (263)
Q Consensus 154 ~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~i~~~~~ 216 (263)
++++++++.++.+ .|+ |+++=+. |.+.+.+.++.+..+ ++..++-++||++... ..+.++.++
T Consensus 241 l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 241 IETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMS 320 (355)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6788888877554 442 2333333 444566666655432 4456788888876421 246667788
Q ss_pred CCceEEEccCCCC
Q 024751 217 KSIIVTAFSPLGA 229 (263)
Q Consensus 217 ~gi~v~a~spl~~ 229 (263)
+|+.+......|.
T Consensus 321 ~gi~v~iR~~~G~ 333 (355)
T TIGR00048 321 YGFTVTIRKSRGD 333 (355)
T ss_pred CCCeEEEeCCCCc
Confidence 9999999888764
No 189
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=31.50 E-value=4.8e+02 Score=25.28 Aligned_cols=139 Identities=10% Similarity=0.042 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHcCCc-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCcc--E-EEeeCC--CCCCCChhHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREE--L-FITTKL--WCSDAHRDLVVPALKK 113 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~--~-~I~tK~--~~~~~~~~~i~~~~~~ 113 (263)
.+.++=.+-+..|++.|-- ..|-+. .|.-..+-+++=+. +.+ +--. + ....|+ -..+.+.+.+++.+++
T Consensus 229 s~ieeEveK~~~A~~~GADtvMDLST-Ggdi~~~R~~Il~~--spv--PvGTVPiYqA~~~~~~~~~~lt~e~~~d~iee 303 (607)
T PRK09284 229 SSIEEEVEKMVWATRWGADTVMDLST-GKNIHETREWILRN--SPV--PIGTVPIYQALEKVNGVAEDLTWEIFRDTLIE 303 (607)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC-CCCHHHHHHHHHHc--CCC--CccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 4555556678899999964 556553 33333333333211 000 0000 0 000011 1124555666666655
Q ss_pred HHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCC
Q 024751 114 SLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIP 193 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 193 (263)
..+ +-+|.+.+|.. -..+.++.++ + |..||-+-.-..+..++-...
T Consensus 304 QAe----qGVDf~TIHaG------------------------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~-- 349 (607)
T PRK09284 304 QAE----QGVDYFTIHAG------------------------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH-- 349 (607)
T ss_pred HHH----hCCCEEEEChh------------------------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC--
Confidence 544 34799999965 1234444444 2 678887777666666654322
Q ss_pred CeeeccccCCCCC-cHHHHHHHHhCCceEEE
Q 024751 194 PTVNQVEMNPAWQ-QRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 194 ~~~~q~~~~~~~~-~~~~i~~~~~~gi~v~a 223 (263)
.=|++.. -.++++.|++++|.+--
T Consensus 350 ------kENplYe~FD~ileI~k~YDVtlSL 374 (607)
T PRK09284 350 ------KENFLYTHFEEICEIMAAYDVSFSL 374 (607)
T ss_pred ------CcCcHHHHHHHHHHHHHHhCeeeec
Confidence 1123322 25688888888877743
No 190
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=31.38 E-value=1e+02 Score=23.52 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEe
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV 175 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 175 (263)
+..+.+.|+.+....+|+++++..+...+. ..+....++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~----------------~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRN----------------YLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccC----------------HHHHHHHHHHHHhhcCcEEEEe
Confidence 455666666666667888888877654432 5566666777766623444444
No 191
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=30.92 E-value=3.8e+02 Score=24.24 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCC
Q 024751 66 YGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIP 145 (263)
Q Consensus 66 Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~ 145 (263)
||.++.+-+++++..+.. ..+-++|.|-..+.-. -+++..-+++.-++.+. .++.+|.+..... .
T Consensus 56 ~G~~~kL~~~i~~~~~~~---~P~~i~v~~sC~~~iI-GdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~---~----- 120 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKY---KPKAIFVVTSCVPEII-GDDIEAVARELQEEYGI---PVIPVHTPGFSGS---Y----- 120 (398)
T ss_dssp HTSHHHHHHHHHHHHHHH---STSEEEEEE-HHHHHT-TTTHHHHHHHHHHHHSS---EEEEEE--TTSSS---H-----
T ss_pred hcchhhHHHHHHHHHhcC---CCcEEEEECCCCHHHh-CCCHHHHHHHhhcccCC---cEEEEECCCccCC---c-----
Confidence 678888888888765543 4577888877632100 13344444444445554 8888887744111 0
Q ss_pred ccccccCCHHHHHHHHHHHH-H------cCCccEEEecCCC---HHHHHHHHHhCCCCCeeeccc--------------c
Q 024751 146 EEDLVSLDYNGVWEAMEECQ-R------HGLTKSIGVSNFS---PKKIETILAFATIPPTVNQVE--------------M 201 (263)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~l~-~------~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~~~q~~--------------~ 201 (263)
..-.+.++.+|-+.. + ++.|.-||.++.. ..++.++++..+++....-.. +
T Consensus 121 -----~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~l 195 (398)
T PF00148_consen 121 -----SQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAAL 195 (398)
T ss_dssp -----HHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSE
T ss_pred -----cchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcE
Confidence 111455666655544 2 3678888998765 456888888777542222111 1
Q ss_pred CCCCCc--H-HHHHHHHhC-CceEEE-ccCCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 202 NPAWQQ--R-KLVEFCKSK-SIIVTA-FSPLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 202 ~~~~~~--~-~~i~~~~~~-gi~v~a-~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
|+.... . .+.++.+++ |++++. -.|+|-. -.+..+++|++..+.
T Consensus 196 niv~~~~~~~~~a~~L~e~~giP~~~~~~p~G~~---------~t~~~l~~i~~~lg~ 244 (398)
T PF00148_consen 196 NIVLCPEGGPYAAEWLEERFGIPYLYFPSPYGIE---------GTDAWLRAIAEALGK 244 (398)
T ss_dssp EEESSCCHHHHHHHHHHHHHT-EEEEEC-SBSHH---------HHHHHHHHHHHHHTH
T ss_pred EEEeccchhhHHHHHHHHHhCCCeeeccccccHH---------HHHHHHHHHHHHhCC
Confidence 111111 2 266666665 999999 5555420 123567777777773
No 192
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.91 E-value=3.3e+02 Score=24.89 Aligned_cols=69 Identities=22% Similarity=0.183 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccc-----c-CCCCCcHHHHHHHHhCCceEEE
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVE-----M-NPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~-----~-~~~~~~~~~i~~~~~~gi~v~a 223 (263)
+-+.+.++++++.+.+-.+.++..+..++.+++..++.+..+++.. | +.......+.+++++.+|.|++
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 4456677788888877677776666777777777777776665422 1 2222235688899999999886
No 193
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.77 E-value=4.4e+02 Score=24.54 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=64.7
Q ss_pred HHHHHHHHcCC--cEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC
Q 024751 47 SAVLESIKLGY--RHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQI 120 (263)
Q Consensus 47 ~~l~~A~~~Gi--~~~DtA~~Yg----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~ 120 (263)
..++.+++.|- +.| .|| .-..+.+.|... ....+.-.+-+. .+.+.+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~l~SmI----l~GPPG~GKTTlA~liA~~-------~~~~f~~~sAv~---~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGHLHSMI----LWGPPGTGKTTLARLIAGT-------TNAAFEALSAVT---SGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCCCceeE----EECCCCCCHHHHHHHHHHh-------hCCceEEecccc---ccHHHHHHHHHHHHHHHhc
Confidence 45788888762 233 566 366777777765 233333333222 2348999999999888875
Q ss_pred CcccEEEe---ecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 024751 121 EYVDLYLI---HWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 121 ~~iDl~~l---h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
.+=-++++ |+.+ ...=++|--.++.|.|-.||-++-|+
T Consensus 103 gr~tiLflDEIHRfn----------------------K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFN----------------------KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcC----------------------hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 55556666 5542 23345788899999999999987654
No 194
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=30.71 E-value=1.9e+02 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=14.6
Q ss_pred HHHHHHHcCCcEEeCCCCc
Q 024751 48 AVLESIKLGYRHFDTASLY 66 (263)
Q Consensus 48 ~l~~A~~~Gi~~~DtA~~Y 66 (263)
-+...++.|||+||-=..|
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4678899999999865443
No 195
>PRK02399 hypothetical protein; Provisional
Probab=30.64 E-value=1.4e+02 Score=27.55 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEE------------
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI------------ 173 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------------ 173 (263)
....++...|+.-| .|++.+|---... ++||+|.++|.+..+
T Consensus 199 p~v~~~~~~Le~~G---yEvlVFHATG~GG-----------------------raME~Li~~G~~~gVlDlTttEv~d~l 252 (406)
T PRK02399 199 PCVQAAREELEARG---YEVLVFHATGTGG-----------------------RAMEKLIDSGLIAGVLDLTTTEVCDEL 252 (406)
T ss_pred HHHHHHHHHHHhCC---CeEEEEcCCCCch-----------------------HHHHHHHHcCCceEEEEcchHHHHHHH
Confidence 34455555555555 6999999652211 499999999999876
Q ss_pred --EecCCCHHHHHHHHHhC
Q 024751 174 --GVSNFSPKKIETILAFA 190 (263)
Q Consensus 174 --Gvs~~~~~~l~~~~~~~ 190 (263)
|+-+-.++.+..+.+..
T Consensus 253 ~GGv~sagp~Rl~Aa~~~g 271 (406)
T PRK02399 253 FGGVLAAGPDRLEAAARTG 271 (406)
T ss_pred hCcCccCCccHHHHHHHcC
Confidence 66666777787777654
No 196
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=30.54 E-value=3e+02 Score=24.02 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=51.9
Q ss_pred HHHHHHcCC-ccEEEecCCCHHHHHHHHHhCCCC--------------CeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 161 MEECQRHGL-TKSIGVSNFSPKKIETILAFATIP--------------PTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 161 l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~--------------~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
+..+.+.+. +..++++.-+++..+++.+..++. +.++-+ .+|-....+++..|-++|+.|++=.
T Consensus 20 ~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~I-atp~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 20 LPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYI-ATPNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEE-cCCChhhHHHHHHHHhcCCEEEEcC
Confidence 334444444 688899888888777666654432 111111 1111223578888899999999999
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 226 PLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 226 pl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
|++. .+-+...+.++|++.++
T Consensus 99 Pla~--------t~~ea~~l~~~a~~~~~ 119 (342)
T COG0673 99 PLAL--------TLEEAEELVELARKAGV 119 (342)
T ss_pred CCCC--------CHHHHHHHHHHHHHcCC
Confidence 9985 22233456777777654
No 197
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=30.39 E-value=2.3e+02 Score=21.13 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=34.0
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC--CcccEEEeecCCC
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQI--EYVDLYLIHWPMS 133 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~--~~iDl~~lh~p~~ 133 (263)
+|=.+.|+-|+......+..+++.+.++++.... ...|++++..+..
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~ 92 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKF 92 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCc
Confidence 5666777778665566678899999998865432 3469999998743
No 198
>PF11181 YflT: Heat induced stress protein YflT
Probab=30.29 E-value=90 Score=22.56 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCccEEEeeC
Q 024751 66 YGTERALGEAIAEALKLGLVASREELFITTK 96 (263)
Q Consensus 66 Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK 96 (263)
|.++..+-.++.++.+.|. ..++++|.+|
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy--~~ddI~Vva~ 34 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGY--SEDDIYVVAK 34 (103)
T ss_pred ECCHHHHHHHHHHHHHcCC--CcccEEEEEc
Confidence 4577888888988888898 8999999998
No 199
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=29.98 E-value=4e+02 Score=23.76 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHH-HcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCC
Q 024751 42 ESAMKSAVLESI-KLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKL 97 (263)
Q Consensus 42 ~~~~~~~l~~A~-~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~ 97 (263)
-.++.+++...+ +.+.+.|=|=..==.-..++..|+.+++.|. =+++|+|=.
T Consensus 42 l~~A~~i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~----VD~iVtTga 94 (316)
T PRK02301 42 LAEAVDIYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGH----IDVLVTTGA 94 (316)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCC----eeEEEcCCC
Confidence 456777888887 5666654221111145667888888866653 346666654
No 200
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.84 E-value=3.6e+02 Score=23.08 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
.+++.+.+.+++.++ -|.|+||+=. .|. .. + ..++.-+.+..+++.-. .-|.|=+++++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~--~~------~---------~~ee~~r~v~~i~~~~~-~piSIDT~~~~ 81 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG--GL------D---------GVSAMKWLLNLLATEPT-VPLMLDSTNWE 81 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC--CC------C---------HHHHHHHHHHHHHHhcC-CcEEeeCCcHH
Confidence 445677777666665 4999999854 121 00 0 02222223222222211 23777789999
Q ss_pred HHHHHHHhCCCCCeeeccccCCCC-CcHHHHHHHHhCCceEEEccCC
Q 024751 182 KIETILAFATIPPTVNQVEMNPAW-QQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~-~~~~~i~~~~~~gi~v~a~spl 227 (263)
.+++.++.+.=.+.+|-+....+. ....+++.++++|..++.+.--
T Consensus 82 v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 82 VIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999999974323445543322211 2356889999999999887543
No 201
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=29.83 E-value=76 Score=27.88 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCCCcc--cEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccE
Q 024751 105 DLVVPALKKSLKTLQIEYV--DLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKS 172 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~i--Dl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~ 172 (263)
+...+.+.+.+++||+.+- ..+.-+.+ .....+++.+++|+++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~--------------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEP--------------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCH--------------------HHHHHHHHHHHHHHHCCCEEe
Confidence 6677788899999998542 22222222 126789999999999999865
No 202
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.70 E-value=1.7e+02 Score=22.33 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCcEEeCC
Q 024751 46 KSAVLESIKLGYRHFDTA 63 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA 63 (263)
...+..+++.|+|+||.-
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 457889999999999754
No 203
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.62 E-value=4.3e+02 Score=23.91 Aligned_cols=92 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHH
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFSPKKIETI 186 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~ 186 (263)
+..+-+.|.++|+++|.+-+.-.+ ++-|+.+..+.+.+. .+-.+.+....+.++.+
T Consensus 24 k~~ia~~L~~~Gv~~IEvG~p~~~-----------------------~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a 80 (363)
T TIGR02090 24 KVEIARKLDELGVDVIEAGFPIAS-----------------------EGEFEAIKKISQEGLNAEICSLARALKKDIDKA 80 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-----------------------hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHH
Q ss_pred HHhCCCCCeeeccccCCCCCc--------------HHHHHHHHhCCceEEE
Q 024751 187 LAFATIPPTVNQVEMNPAWQQ--------------RKLVEFCKSKSIIVTA 223 (263)
Q Consensus 187 ~~~~~~~~~~~q~~~~~~~~~--------------~~~i~~~~~~gi~v~a 223 (263)
.+ ++++..-+-+..|..+.+ .+.+++|+++|..+..
T Consensus 81 ~~-~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 130 (363)
T TIGR02090 81 ID-CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF 130 (363)
T ss_pred HH-cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
No 204
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=29.40 E-value=3.8e+02 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=38.8
Q ss_pred ccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCceEEEccCCC
Q 024751 170 TKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 170 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v~a~spl~ 228 (263)
++..-+-..+.+.+++++.. +.+.++.....||.... .++.+.|+++|+.++.-..++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44555555567777777643 44555555566775432 578999999999998877764
No 205
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=29.21 E-value=2.3e+02 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCccEEEec-CCCHHHHHHHHHhCCCCCeeecccc
Q 024751 168 GLTKSIGVS-NFSPKKIETILAFATIPPTVNQVEM 201 (263)
Q Consensus 168 G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~ 201 (263)
+.++.+||. +-+++.+.++++...++ ++|++-
T Consensus 53 ~~i~~VgVf~~~~~~~i~~~~~~~~~d--~vQLHg 85 (210)
T PRK01222 53 PFVKVVGVFVNASDEEIDEIVETVPLD--LLQLHG 85 (210)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcCCC--EEEECC
Confidence 568899997 66788898998876654 888864
No 206
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=29.20 E-value=5.5e+02 Score=25.14 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHhCCCcccEEEee-cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCC
Q 024751 116 KTLQIEYVDLYLIH-WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS-NFSPKKIETILAFATIP 193 (263)
Q Consensus 116 ~~Lg~~~iDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~ 193 (263)
..+|.|++=+++.. .|... +.+.....+.+....-.++.|||. |-+.+.+.++.+...++
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V------------------~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld 81 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFV------------------GNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGID 81 (610)
T ss_pred HHcCCCEEEEEecCCCCCCC------------------CHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 45899998887544 22111 123313333333332357789996 77888999998876655
Q ss_pred CeeeccccC
Q 024751 194 PTVNQVEMN 202 (263)
Q Consensus 194 ~~~~q~~~~ 202 (263)
++|++-.
T Consensus 82 --~vQLHG~ 88 (610)
T PRK13803 82 --FVQLHGA 88 (610)
T ss_pred --EEEECCC
Confidence 8888753
No 207
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=29.18 E-value=4.4e+02 Score=23.93 Aligned_cols=162 Identities=18% Similarity=0.093 Sum_probs=90.5
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDI 144 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~ 144 (263)
.||.++.+-+++++..+.. +.+-++|.|-..+.-. -+++..-+++.-++.+ +.++.+|.|...... .
T Consensus 68 V~Gg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~i-GdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--~---- 134 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF---PPKAIFVYSTCPTGLI-GDDIEAVAKEASKELG---IPVIPVNCEGFRGVS--Q---- 134 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC---CCCEEEEECCCchhhh-ccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCc--c----
Confidence 4788889999998875432 3455777776643211 1334433444333444 789999987432210 0
Q ss_pred CccccccCCHHHHHHHHHHHH---------HcCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccC-----------
Q 024751 145 PEEDLVSLDYNGVWEAMEECQ---------RHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMN----------- 202 (263)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~----------- 202 (263)
..-...++++|-+.. +.+.|.-||..++ +.+++.++++..++++...-....
T Consensus 135 ------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A 208 (406)
T cd01967 135 ------SLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRA 208 (406)
T ss_pred ------cHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccC
Confidence 011444555555443 3456888887665 347889999987766443221111
Q ss_pred ---CC-CCc--HHHHHH-HHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 203 ---PA-WQQ--RKLVEF-CKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 203 ---~~-~~~--~~~i~~-~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
+. .+. ..+.++ .++.|+.++...|.+- --.+..++.+++..|+
T Consensus 209 ~~niv~~~~~~~~~a~~L~~r~GiP~~~~~p~G~---------~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 209 KLNLVHCSRSMNYLAREMEERYGIPYMEVNFYGF---------EDTSESLRKIAKFFGD 258 (406)
T ss_pred CEEEEEChHHHHHHHHHHHHhhCCCEEEecCCcH---------HHHHHHHHHHHHHhCC
Confidence 11 110 123333 3467888877566542 0124568888888887
No 208
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.92 E-value=65 Score=17.98 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCc
Q 024751 43 SAMKSAVLESIKLGYR 58 (263)
Q Consensus 43 ~~~~~~l~~A~~~Gi~ 58 (263)
++-..++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4677899999999975
No 209
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=28.70 E-value=77 Score=22.20 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 024751 106 LVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIET 185 (263)
Q Consensus 106 ~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 185 (263)
.+-...+.....||.+..|+..+..-.+.. -.+.+++.|...++.. | .+-+...|..
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~-----------------l~eQv~~mL~~W~~r~-----G-~~ATv~~L~~ 67 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKENHPHN-----------------VQSQIVEALVKWRQRF-----G-KKATVQSLIQ 67 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHHhc-----C-CCCcHHHHHH
Confidence 344566777888999999988886432211 1467777888887652 2 3556788999
Q ss_pred HHHhCCCCCeeecc
Q 024751 186 ILAFATIPPTVNQV 199 (263)
Q Consensus 186 ~~~~~~~~~~~~q~ 199 (263)
+++.++++|.+.|+
T Consensus 68 aL~~~~~~~~~~~~ 81 (83)
T cd08319 68 SLKAVEVDPSVLQF 81 (83)
T ss_pred HHHHcCCCHHHHHh
Confidence 99988888776553
No 210
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=28.68 E-value=3.7e+02 Score=22.94 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEA 79 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~ 79 (263)
.+++...++++.+.+.|+..|--++.+| ....+.+.++..
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 4556666666666666666665555555 344455555443
No 211
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.51 E-value=1.1e+02 Score=25.66 Aligned_cols=62 Identities=10% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHHHHH-HHHcCCccEEEecCC-CHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEE
Q 024751 155 NGVWEAMEE-CQRHGLTKSIGVSNF-SPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 155 ~~~~~~l~~-l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a 223 (263)
.+.++.|.+ ..++.-=-.||..+. +.++++.+++.+- ++.+ +|. -..+++++|+++||.++.
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA-~FiV-----sP~-~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGA-NFIV-----TPL-FNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCC-CEEE-----CCC-CCHHHHHHHHHcCCCEeC
Confidence 444555532 223321125888764 6788888877543 3322 332 246899999999998875
No 212
>PHA02820 phospholipase-D-like protein; Provisional
Probab=28.41 E-value=4.9e+02 Score=24.19 Aligned_cols=45 Identities=9% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCccEEEeeCCCCCC---CCh-----hHHHHHHHHHHHHhCCCcccEEEeecCC
Q 024751 87 SREELFITTKLWCSD---AHR-----DLVVPALKKSLKTLQIEYVDLYLIHWPM 132 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~---~~~-----~~i~~~~~~sL~~Lg~~~iDl~~lh~p~ 132 (263)
.++.|+|+|=.+.+. .+. ..+..++.+.-..=|+ .+=+++-+|++
T Consensus 230 Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV-~VriLvp~~~d 282 (424)
T PHA02820 230 ASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKV-SVKLLISCWQR 282 (424)
T ss_pred HhhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCC-EEEEEEeccCC
Confidence 367778877665554 111 2455555432223344 24445555553
No 213
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.24 E-value=4.2e+02 Score=23.45 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCC----------CcC-----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCC-CC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTAS----------LYG-----TERALGEAIAEALKLGLVASREELFITTKLWCSD-AH 103 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg-----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~-~~ 103 (263)
.++++..++.+.+.+.|+..||.-- .+| ..+.+.+.++..++. - ++-|+.|+-... .+
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a----~--d~pv~vKiR~G~~~~ 147 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA----V--DVPVTLKIRTGWAPE 147 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh----c--CCceEEEEEccccCC
Confidence 5678878888888889999999432 234 255566666654211 1 244666762211 11
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCC-CHHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNF-SPKK 182 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~ 182 (263)
.... ..+-+.++..| +|.+.+|.-+..... . -..-|+.+.++++.=.|--||.... +++.
T Consensus 148 ~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~---~------------G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d 208 (321)
T PRK10415 148 HRNC-VEIAQLAEDCG---IQALTIHGRTRACLF---N------------GEAEYDSIRAVKQKVSIPVIANGDITDPLK 208 (321)
T ss_pred cchH-HHHHHHHHHhC---CCEEEEecCcccccc---C------------CCcChHHHHHHHHhcCCcEEEeCCCCCHHH
Confidence 1112 12333466677 577788954321100 0 0123667777777666777777764 6788
Q ss_pred HHHHHHhCCCC
Q 024751 183 IETILAFATIP 193 (263)
Q Consensus 183 l~~~~~~~~~~ 193 (263)
+.++++....+
T Consensus 209 a~~~l~~~gad 219 (321)
T PRK10415 209 ARAVLDYTGAD 219 (321)
T ss_pred HHHHHhccCCC
Confidence 88888765544
No 214
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.12 E-value=3.2e+02 Score=22.08 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccc
Q 024751 69 ERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEED 148 (263)
Q Consensus 69 e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~ 148 (263)
|+..-.+|+..+ ...++.|.--+++-......+++.+++.|+ .+..=+..+|.-+..
T Consensus 87 e~i~~~al~rA~------~~aDvIIIDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~-------------- 143 (179)
T COG1618 87 EEIAIPALRRAL------EEADVIIIDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRH-------------- 143 (179)
T ss_pred HHHhHHHHHHHh------hcCCEEEEecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCC--------------
Confidence 666677787651 334899999998887777888888888754 455677888964221
Q ss_pred cccCCHHHHHHHHHHHHHcCCccE-EEecCCCHHHHHHHHH
Q 024751 149 LVSLDYNGVWEAMEECQRHGLTKS-IGVSNFSPKKIETILA 188 (263)
Q Consensus 149 ~~~~~~~~~~~~l~~l~~~G~ir~-iGvs~~~~~~l~~~~~ 188 (263)
..++++++.|.+.- +-..|.+ ..+.++++
T Consensus 144 ----------P~v~~ik~~~~v~v~lt~~NR~-~i~~~Il~ 173 (179)
T COG1618 144 ----------PLVQRIKKLGGVYVFLTPENRN-RILNEILS 173 (179)
T ss_pred ----------hHHHHhhhcCCEEEEEccchhh-HHHHHHHH
Confidence 16788888999888 4445555 33444443
No 215
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.03 E-value=2.9e+02 Score=23.49 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCccEEEecCCC-HHHHHHHHHhCCCCCeeeccc
Q 024751 158 WEAMEECQRHGLTKSIGVSNFS-PKKIETILAFATIPPTVNQVE 200 (263)
Q Consensus 158 ~~~l~~l~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~ 200 (263)
..+++.+++.|+-+.|-|..|+ ...+.++++...+.-.+.|-+
T Consensus 198 ~ga~~al~~~g~~~~i~vvg~d~~~~~~~~l~~g~i~~~~~q~p 241 (302)
T TIGR02637 198 KAAAQAVSDAKLIGKVKLTGLGLPSEMAKYVKNGTVKAFALWNP 241 (302)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHhcCccceEEEeCH
Confidence 3444445555544444444444 244444455444444444433
No 216
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=27.98 E-value=3.7e+02 Score=22.63 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=38.1
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCCeee--------------ccc---cCCC--CCcHHHHHHHHhCCceEEEccCC
Q 024751 167 HGLTKSIGVSNFSPKKIETILAFATIPPTVN--------------QVE---MNPA--WQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 167 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~--------------q~~---~~~~--~~~~~~i~~~~~~gi~v~a~spl 227 (263)
.+..+.+=+++|+++.+..+.+...--+... +.. +++. .-..++++.|+++|+.+.+|.+=
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn 218 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVN 218 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCC
Confidence 3444567889999998888877543111110 010 1111 12368999999999999999754
No 217
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.92 E-value=4.7e+02 Score=23.86 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCC---HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGT---ERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygs---e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
++++..+....+++.|++.|=.--.... ....=+++++. -.+++-|..-.. ..++.+... +.++.
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~-------~G~~~~l~vDaN-~~w~~~~A~----~~~~~ 227 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDV-------LGDGARLAVDAN-GRFDLETAI----AYAKA 227 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHh-------cCCCCeEEEECC-CCCCHHHHH----HHHHH
Confidence 4566677778888999997743211111 12222344433 122333433332 223333322 23333
Q ss_pred hCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCC--CC
Q 024751 118 LQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK-SIGVSNFSPKKIETILAFATI--PP 194 (263)
Q Consensus 118 Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~--~~ 194 (263)
|. .+++.++..|.+. +-++.+.+|++...+- ..|=|-++...+.++++.... ..
T Consensus 228 l~--~~~~~~iEeP~~~---------------------~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~ 284 (385)
T cd03326 228 LA--PYGLRWYEEPGDP---------------------LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDR 284 (385)
T ss_pred hh--CcCCCEEECCCCc---------------------cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccC
Confidence 32 3577778777321 2356777887776554 556677889999999887543 12
Q ss_pred eeeccccCCCC---CcHHHHHHHHhCCceE
Q 024751 195 TVNQVEMNPAW---QQRKLVEFCKSKSIIV 221 (263)
Q Consensus 195 ~~~q~~~~~~~---~~~~~i~~~~~~gi~v 221 (263)
.++|....-+- .-.++.+.|+.+|+.+
T Consensus 285 div~~d~~~~GGit~~~kia~lA~a~gi~~ 314 (385)
T cd03326 285 DVLQFDPGLSYGLPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred CEEEeCchhhCCHHHHHHHHHHHHHcCCCC
Confidence 37777665432 2367999999999983
No 218
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=27.72 E-value=3.2e+02 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC
Q 024751 111 LKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL 169 (263)
Q Consensus 111 ~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 169 (263)
+++.++++.- =+++++|..+.. ....+..-..+..|+++|.
T Consensus 142 ~~~~~~~~~~--g~Iil~Hd~~~~----------------~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 142 VDRVVKNTKP--GDIILLHASDSA----------------KQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred HHHHHhcCCC--CCEEEEeCCCCc----------------HhHHHHHHHHHHHHHHCCC
Confidence 4444555543 379999953110 0113444455667788884
No 219
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.69 E-value=3.7e+02 Score=24.29 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCC-----c-----HHHHHHHH
Q 024751 153 DYNGVWEAMEECQRHGL----TKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQ-----Q-----RKLVEFCK 215 (263)
Q Consensus 153 ~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~-----~~~i~~~~ 215 (263)
..++++++++.+.+.+. ++++=+. |.+.+.++++.+... ....++-++||+... . ..+.+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 36889999998876542 2344333 555666666666543 445678788887642 1 24566689
Q ss_pred hCCceEEEccCCCC
Q 024751 216 SKSIIVTAFSPLGA 229 (263)
Q Consensus 216 ~~gi~v~a~spl~~ 229 (263)
++|+.+......|.
T Consensus 324 ~~gi~v~ir~~~g~ 337 (356)
T PRK14455 324 KNGVNCTIRREHGT 337 (356)
T ss_pred HCCCcEEEeCCCCc
Confidence 99999988877764
No 220
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.56 E-value=2.7e+02 Score=26.75 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHH-cCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 154 YNGVWEAMEECQR-HGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 154 ~~~~~~~l~~l~~-~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
..+++++|...+. .++|--||..+.. ..+..+.+..+++ +.+..|+-...-...+..+++.|+.++.-
T Consensus 83 ~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~~l~~~G~~~viG 151 (526)
T TIGR02329 83 GFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNLD--IVQRSYVTEEDARSCVNDLRARGIGAVVG 151 (526)
T ss_pred hhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCCc--eEEEEecCHHHHHHHHHHHHHCCCCEEEC
Confidence 4557777877765 4677777776664 3455555555555 44445544333467889999999999873
No 221
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=27.50 E-value=2.1e+02 Score=25.96 Aligned_cols=140 Identities=15% Similarity=0.167 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLK 116 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~ 116 (263)
.+.++..++++.+.+.|++.|-.+. | -..-+-+.++...+.. .-..+.|+|-... +.+.+ ..|.
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tG--GEPllr~dl~eli~~l~~~~---gi~~i~itTNG~l-------L~~~~-~~L~ 156 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTG--GEPTLRKDIEDICLQLSSLK---GLKTLAMTTNGIT-------LSRKL-PRLK 156 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcchhhHHHHHHHHHhcC---CCceEEEeeCcch-------HHHHH-HHHH
Confidence 4668888888888899998775432 2 1222444444331110 1123556554321 11222 2334
Q ss_pred HhCCCcccEEEee--cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCc----cEEEecCCCHHHHHHHHHhC
Q 024751 117 TLQIEYVDLYLIH--WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLT----KSIGVSNFSPKKIETILAFA 190 (263)
Q Consensus 117 ~Lg~~~iDl~~lh--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~l~~~~~~~ 190 (263)
..|+ |-+.+. ..++.. .... ........++++++.+++.|.. ..+-+-.++.+++.++++.+
T Consensus 157 ~aGl---d~VnISLDsl~~e~------~~~i---tr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a 224 (373)
T PLN02951 157 EAGL---TSLNISLDTLVPAK------FEFL---TRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELT 224 (373)
T ss_pred hCCC---CeEEEeeccCCHHH------HHHH---hcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHH
Confidence 4454 433333 221100 0000 0011257888899999988852 12333446667777766654
Q ss_pred C-CCCeeeccccCCC
Q 024751 191 T-IPPTVNQVEMNPA 204 (263)
Q Consensus 191 ~-~~~~~~q~~~~~~ 204 (263)
. ....+..++|.|+
T Consensus 225 ~~~gi~vr~ie~mP~ 239 (373)
T PLN02951 225 RDKPINVRFIEFMPF 239 (373)
T ss_pred HhCCCeEEEEEcccC
Confidence 3 2233444444443
No 222
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=27.23 E-value=2.7e+02 Score=24.08 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHcCCccEEEe-cCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCC
Q 024751 161 MEECQRHGLTKSIGV-SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 161 l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~ 228 (263)
|.+..++|.. .+|. .......+.+++...+++++++=.+..++... ..++..|+..|+..+..-|-.
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~ 78 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEG 78 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 4444455765 3443 44445567777777889999999999988765 468888999998888766644
No 223
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=27.19 E-value=2.8e+02 Score=23.81 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeecccc-----------------------CC---------CCCcH
Q 024751 161 MEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEM-----------------------NP---------AWQQR 208 (263)
Q Consensus 161 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~-----------------------~~---------~~~~~ 208 (263)
++.+++.|.-+.+=+++|+++.+..+.....--+...-... +. .....
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQWNLLGLVSAAEPLVMCP 235 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHHCCCeEEEechHHhhhCh
Confidence 34455567778899999999998777665431111110000 00 01124
Q ss_pred HHHHHHHhCCceEEEccC
Q 024751 209 KLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 209 ~~i~~~~~~gi~v~a~sp 226 (263)
++++.++++|+.+.+|..
T Consensus 236 ~~v~~~~~~Gl~v~~WTv 253 (286)
T cd08606 236 RLIQVVKRSGLVCVSYGV 253 (286)
T ss_pred HHHHHHHHCCcEEEEECC
Confidence 678888999999999886
No 224
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=27.14 E-value=45 Score=21.90 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=14.2
Q ss_pred HHHHHHHHhCCCchhh
Q 024751 244 ALKQIAALQQGETERE 259 (263)
Q Consensus 244 ~l~~ia~~~~~t~~~~ 259 (263)
.+.+||+++|+++.+|
T Consensus 24 ~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTI 39 (60)
T ss_pred cHHHHHHHHCCCHHHH
Confidence 5899999999998876
No 225
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.99 E-value=2.4e+02 Score=25.92 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC----------------CCChhHHHHHHHHHHHHhC-CCcccEEEee
Q 024751 67 GTERALGEAIAEALKLGLVASREELFITTKLWCS----------------DAHRDLVVPALKKSLKTLQ-IEYVDLYLIH 129 (263)
Q Consensus 67 gse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~----------------~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh 129 (263)
|+.+.-++.++.. . ++..|+|+.=.|.. .++.+.---.++.-|..|. ...=|+++||
T Consensus 105 GAL~~~A~fl~~~---~---~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH 178 (396)
T COG1448 105 GALRVAADFLARF---F---PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLH 178 (396)
T ss_pred hHHHHHHHHHHHh---C---CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEe
Confidence 3678888888876 3 67779999988853 1122221123344443332 2456899998
Q ss_pred cCCCCCCCccccCCCCccccccCCHHHHHHHHHHHH-HcCCccEE
Q 024751 130 WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQ-RHGLTKSI 173 (263)
Q Consensus 130 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~G~ir~i 173 (263)
...+...+.|+ ..+.|+.+.++. +.|+|=.+
T Consensus 179 ~CcHNPTG~D~-------------t~~qW~~l~~~~~~r~lip~~ 210 (396)
T COG1448 179 GCCHNPTGIDP-------------TEEQWQELADLIKERGLIPFF 210 (396)
T ss_pred cCCCCCCCCCC-------------CHHHHHHHHHHHHHcCCeeee
Confidence 66543333121 467888887755 56665544
No 226
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.72 E-value=4.1e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=22.2
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 024751 162 EECQRHGLTKSIGVSNFSPKKIETILAFAT 191 (263)
Q Consensus 162 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 191 (263)
+.+++.+..+.+=+++|+++.+..+.+...
T Consensus 171 ~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 171 AVVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 344556777888899999998887766543
No 227
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=26.66 E-value=4.7e+02 Score=23.47 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=88.5
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC--CCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCcccc
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCS--DAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLR 141 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~--~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~ 141 (263)
-.||.++.+-+++.+..... ..+-++|.+-..+. ..|.+.+.+.+++ ..+ +.++.++.+..... .
T Consensus 60 ~v~Gg~e~l~~~i~~~~~~~---~p~~i~v~~tc~~~liGdDi~~v~~~~~~---~~~---~~vv~~~~~gf~~~---~- 126 (399)
T cd00316 60 VVFGGGEKLLEAIINELKRY---KPKVIFVYTTCTTELIGDDIEAVAKEASK---EIG---IPVVPASTPGFRGS---Q- 126 (399)
T ss_pred eeeCCHHHHHHHHHHHHHHc---CCCEEEEecCchhhhhccCHHHHHHHHHH---hhC---CceEEeeCCCCccc---H-
Confidence 34774444555554443322 33567777766432 2233444444433 333 67888887644311 0
Q ss_pred CCCCccccccCCHHHHHHHHHHHH---------HcCCccEEEecCC---CHHHHHHHHHhCCCCCeeeccccCC------
Q 024751 142 NDIPEEDLVSLDYNGVWEAMEECQ---------RHGLTKSIGVSNF---SPKKIETILAFATIPPTVNQVEMNP------ 203 (263)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~~q~~~~~------ 203 (263)
..-...++.+|.+.. +++.|.-||.++. +.+.+.++++..++++....-.-..
T Consensus 127 ---------~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~ 197 (399)
T cd00316 127 ---------SAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRE 197 (399)
T ss_pred ---------HHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHh
Confidence 001344444444333 3456788888765 5688999999887665443221111
Q ss_pred --------CCC---cHHHHHHHHhC-CceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhC--CCchhh
Q 024751 204 --------AWQ---QRKLVEFCKSK-SIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQ--GETERE 259 (263)
Q Consensus 204 --------~~~---~~~~i~~~~~~-gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~--~t~~~~ 259 (263)
... ...+.++.+++ |+.++...|+|-. -.+..+++|++..| ...+++
T Consensus 198 ~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~---------~t~~~l~~i~~~~g~~~~~~~~ 258 (399)
T cd00316 198 LGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLE---------ATDAFLRKLAELFGIEKEVPEV 258 (399)
T ss_pred hccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHH---------HHHHHHHHHHHHhCCCcchHHH
Confidence 111 12355666555 9999988888641 12356777777777 444443
No 228
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.61 E-value=1.3e+02 Score=22.37 Aligned_cols=40 Identities=15% Similarity=-0.066 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEA 79 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~ 79 (263)
.+.+.-..++..+++.|.+.-+.|..|| +...+..|.+++
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3566677889999999999999999999 999999999987
No 229
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=26.60 E-value=5.2e+02 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHHhCC-CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc---EEEecCCC
Q 024751 111 LKKSLKTLQI-EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK---SIGVSNFS 179 (263)
Q Consensus 111 ~~~sL~~Lg~-~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir---~iGvs~~~ 179 (263)
+...|+++.. ...|++++... ..++...|+++++.|... .||...|.
T Consensus 219 ~~~~l~~ik~~~~~~vIvl~~~----------------------~~~~~~ll~~a~~~~~~g~~~wig~d~~~ 269 (463)
T cd06376 219 FDKIIKRLLETPNARAVIIFAN----------------------EDDIRRVLEAAKRANQVGHFLWVGSDSWG 269 (463)
T ss_pred HHHHHHHHhccCCCeEEEEecC----------------------hHHHHHHHHHHHhcCCcCceEEEEecccc
Confidence 4445555532 56888888754 345566677777777654 35666553
No 230
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.55 E-value=4.7e+02 Score=23.41 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCcEEeCCC-------------------CcC-C----HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCC
Q 024751 45 MKSAVLESIKLGYRHFDTAS-------------------LYG-T----ERALGEAIAEALKLGLVASREELFITTKLWCS 100 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~-------------------~Yg-s----e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~ 100 (263)
..+..+.|.++|+..++-.. .|| + -+.+-+.++...+ . -..++.|..|+...
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~-~---vG~d~~v~iRi~~~ 214 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA-A---VGEDFIIIYRLSML 214 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHH-H---cCCCceEEEEeccc
Confidence 33444566788998877643 244 2 2333344443311 1 34567888887543
Q ss_pred C-----CChhHHHHHHHHHHHHhCCCcccEE-Eeec-CCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEE
Q 024751 101 D-----AHRDLVVPALKKSLKTLQIEYVDLY-LIHW-PMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI 173 (263)
Q Consensus 101 ~-----~~~~~i~~~~~~sL~~Lg~~~iDl~-~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 173 (263)
+ .+.+... .+-+-|+..|+|++++- -.|. +.... ....+ ........+++++.=.+--+
T Consensus 215 D~~~~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~---~~~~~----------~~~~~~~~~~ik~~v~iPVi 280 (353)
T cd02930 215 DLVEGGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTI---ATSVP----------RGAFAWATAKLKRAVDIPVI 280 (353)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccc---cccCC----------chhhHHHHHHHHHhCCCCEE
Confidence 2 2333332 34455778898877762 1231 11100 00000 01112234555655556666
Q ss_pred EecC-CCHHHHHHHHHhCCCC
Q 024751 174 GVSN-FSPKKIETILAFATIP 193 (263)
Q Consensus 174 Gvs~-~~~~~l~~~~~~~~~~ 193 (263)
+... ++++.++++++....+
T Consensus 281 ~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 281 ASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred EcCCCCCHHHHHHHHHCCCCC
Confidence 6655 4788899998876655
No 231
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.52 E-value=1.9e+02 Score=26.38 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-hCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCCCCCCC
Q 024751 157 VWEAMEECQRHGLTKSIGVSNFSPKKIETILA-FATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGAVGSS 233 (263)
Q Consensus 157 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~~~G~l 233 (263)
-..++.+|.+.|.+.+|-. .|-.+.-..++. ...-+|. ..|.+...+ +.+++.|+++||.|+..+ ++ +
T Consensus 11 ~~~a~~~l~~~g~~d~l~~-d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na--Gg---~ 81 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVG-DYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA--GG---L 81 (362)
T ss_pred cHHHHHHHHhcCCCCEEEE-ecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC--CC---C
Confidence 3567888888999999865 333332222222 1111221 123222221 579999999999999964 22 1
Q ss_pred CCCCCCCCcHHHHHHHHHhCCC
Q 024751 234 WGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 234 ~~~~~~l~~~~l~~ia~~~~~t 255 (263)
.+.- -...++++|+++|.+
T Consensus 82 --np~~-~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 --NPAG-CADIVREIARELGLS 100 (362)
T ss_pred --CHHH-HHHHHHHHHHhcCCC
Confidence 1111 235688888888865
No 232
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=26.49 E-value=45 Score=28.27 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHH
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEA 79 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~ 79 (263)
-+-.......|.+.|++++|.. +|.+|+..-+.|.++
T Consensus 198 Gd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 198 GDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp SS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred ccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 3445666788889999999865 787776655555544
No 233
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=26.48 E-value=2.2e+02 Score=21.28 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
.+...+.+....+.|+|. ....+..++++......++.--..+|..--..+-..|++++|+++-.
T Consensus 12 ~~k~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V 76 (116)
T COG1358 12 EQKALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYV 76 (116)
T ss_pred HHHHHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 456677777777887653 34567777778777777777656655444456788899999998764
No 234
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=26.40 E-value=4.9e+02 Score=23.58 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHhCCCCCeeeccccCCCCC---cHHHHHHHHhCCceEEEccCCCC
Q 024751 177 NFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
..+.+.+++.+.. +.+.+++....||... -.++.+.|+++|+.++.-...+.
T Consensus 133 ~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~ 187 (388)
T PRK07811 133 LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFAS 187 (388)
T ss_pred CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 3467777776642 4555555555565432 26789999999999997776653
No 235
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=26.32 E-value=2.7e+02 Score=20.50 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC---CcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQI---EYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEE 163 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~---~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (263)
.|=-+.|+-|++. ...+..+++.+.+.++.... ...|++++-.+.... .+..+.-+.|..
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~----------------~~~~~l~~~l~~ 100 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE----------------LDYKEIKKSLIH 100 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc----------------CCHHHHHHHHHH
Confidence 4666777777765 66788999999998876532 357999998874332 236666667766
Q ss_pred HHHc
Q 024751 164 CQRH 167 (263)
Q Consensus 164 l~~~ 167 (263)
|.+.
T Consensus 101 ll~k 104 (114)
T PRK00499 101 VLKL 104 (114)
T ss_pred HHHH
Confidence 5543
No 236
>PRK10799 metal-binding protein; Provisional
Probab=26.11 E-value=1.3e+02 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHFDTASLYGTERALGEAIAEAL 80 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~ 80 (263)
......|.+.|++++|.. +|.+|...-+.|.+.+
T Consensus 197 ~h~~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L 230 (247)
T PRK10799 197 EQTIHSAREQGLHFYAAG-HHATERGGIRALSEWL 230 (247)
T ss_pred hHHHHHHHHCCCeEEEcC-chHHHHHHHHHHHHHH
Confidence 344677888888888854 7777777444454443
No 237
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.07 E-value=2.2e+02 Score=25.96 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=48.7
Q ss_pred HHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEccCC
Q 024751 157 VWEAMEECQRH------GLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 157 ~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~spl 227 (263)
.++.+.+|++. +.=-..|-+.++...+.++++....+ ++|...+-.- .-.++.++|+.+||.++..+..
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~d--iv~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAH--MVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCC--EEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 46677777766 33334566677888899998876655 7777665432 3367999999999999986543
No 238
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.02 E-value=3.4e+02 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCc
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLY 66 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y 66 (263)
.+.++..++++.|.+.|+|-+=..++|
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh 43 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHH 43 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccc
Confidence 457889999999999999966555554
No 239
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=25.98 E-value=5.4e+02 Score=23.88 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcC--CccEEEecC--CCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEE-EccC
Q 024751 157 VWEAMEECQRHG--LTKSIGVSN--FSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVT-AFSP 226 (263)
Q Consensus 157 ~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~-a~sp 226 (263)
-|+.+.+|.+.- .+.-+|=-+ .+...+.++++....+ ++|+..+-.- .-.++...|+++|+.++ .++.
T Consensus 291 D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d--~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~s 366 (425)
T TIGR01060 291 DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVAN--SILIKPNQIGTLTETLDAVELAKKAGYTAVISHRS 366 (425)
T ss_pred cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCC--EEEecccccCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 366777776654 444433222 2588899998876544 6666665432 23678999999999855 4443
No 240
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.94 E-value=4e+02 Score=23.48 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=47.2
Q ss_pred cEEEeeCC--CCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHc
Q 024751 90 ELFITTKL--WCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH 167 (263)
Q Consensus 90 ~~~I~tK~--~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (263)
.+-|++.+ +.+.-+++.+.+-++ .+..++++-|-+..||-... ..|+++..+
T Consensus 181 gIkvc~HiI~GLPgE~~~~mleTak-~v~~~~v~GIKlH~Lhvvkg-------------------------T~m~k~Y~~ 234 (312)
T COG1242 181 GIKVCTHLINGLPGETRDEMLETAK-IVAELGVDGIKLHPLHVVKG-------------------------TPMEKMYEK 234 (312)
T ss_pred CCeEEEEEeeCCCCCCHHHHHHHHH-HHHhcCCceEEEEEEEEecC-------------------------ChHHHHHHc
Confidence 57788887 455666788887777 77889999999999996521 168889999
Q ss_pred CCccEEEecCC
Q 024751 168 GLTKSIGVSNF 178 (263)
Q Consensus 168 G~ir~iGvs~~ 178 (263)
|..+.+-.-.|
T Consensus 235 G~l~~ls~eeY 245 (312)
T COG1242 235 GRLKFLSLEEY 245 (312)
T ss_pred CCceeccHHHH
Confidence 99887765444
No 241
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.68 E-value=4.2e+02 Score=28.45 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=54.9
Q ss_pred EEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc-HHHHHHHHhCCceEEEccCCCCCCCCCCCC-CCCCcHHHHHHHH
Q 024751 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ-RKLVEFCKSKSIIVTAFSPLGAVGSSWGTN-QVMNNEALKQIAA 250 (263)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~~i~~~~~~gi~v~a~spl~~~G~l~~~~-~~l~~~~l~~ia~ 250 (263)
|-|=+++++.++..++...-++.+|-++.--.... .++++.|+++|..++.+.--. .|...... .+--..++.+++.
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de-~G~~~t~e~r~~ia~r~~~~~~ 512 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDE-QGQADTRERKIEICKRAYDILT 512 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 55668889999999998665677775443222221 469999999999999986433 35432211 1111234445554
Q ss_pred -HhCCCchhhc
Q 024751 251 -LQQGETEREL 260 (263)
Q Consensus 251 -~~~~t~~~~~ 260 (263)
++|..++.++
T Consensus 513 ~~~Gi~~~dIi 523 (1229)
T PRK09490 513 EEVGFPPEDII 523 (1229)
T ss_pred HHcCCCHHHEE
Confidence 5999987765
No 242
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=25.61 E-value=22 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEAL 80 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~~ 80 (263)
+++.-..+|..++..|.+.-+.|..|| +...|..|++++.
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 467778899999999999999999999 9999999999874
No 243
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.59 E-value=1.6e+02 Score=26.71 Aligned_cols=17 Identities=0% Similarity=-0.101 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHHhC
Q 024751 103 HRDLVVPALKKSLKTLQ 119 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg 119 (263)
+|..+.+.++...+.++
T Consensus 169 ~P~~v~~lv~~l~~~~~ 185 (365)
T TIGR02660 169 DPFSTYELVRALRQAVD 185 (365)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 44555555555555443
No 244
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.54 E-value=1.6e+02 Score=26.76 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHH
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVS-NFSPKKIETILA 188 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~ 188 (263)
.+++...|+.. .|+. .++.+.+.++.+
T Consensus 233 lE~vv~~L~~~--------~g~~~~idl~~l~~~s~ 260 (378)
T PRK11858 233 LEEVVMALKYL--------YGIDLGIDTERLYELSR 260 (378)
T ss_pred HHHHHHHHHHH--------hCCCCCcCHHHHHHHHH
Confidence 56666666532 2333 356665555444
No 245
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=25.43 E-value=88 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCceEEE
Q 024751 208 RKLVEFCKSKSIIVTA 223 (263)
Q Consensus 208 ~~~i~~~~~~gi~v~a 223 (263)
++++++|+++||.|+.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 5899999999999996
No 246
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.19 E-value=5.5e+02 Score=23.70 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=63.3
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhC-CCcccEEEeecCCCCCCCccccCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQ-IEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
.||.++.+-++|++..+.- +.+-++|.|-..+.-. -+++...+++.-++.- ...+.++.+|.|......
T Consensus 62 VfGg~~~L~~~i~~~~~~~---~p~~I~V~ttc~~eiI-GdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~------ 131 (417)
T cd01966 62 ILGGGENLEEALDTLAERA---KPKVIGLLSTGLTETR-GEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSL------ 131 (417)
T ss_pred EECCHHHHHHHHHHHHHhc---CCCEEEEECCCccccc-ccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcH------
Confidence 4788888888888765432 4556777777644311 1334444433333310 013678888887543210
Q ss_pred CCccccccCCHHHHHHHHHH-H--------HHcCCccEEEecCC---CHHHHHHHHHhCCCCCee
Q 024751 144 IPEEDLVSLDYNGVWEAMEE-C--------QRHGLTKSIGVSNF---SPKKIETILAFATIPPTV 196 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~-l--------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~ 196 (263)
..-...++++|-+ + +..++|.-||-++. +.+.++++++..++++.+
T Consensus 132 -------~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 132 -------EDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred -------HHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 0113334444432 2 23566888875544 346788888877777543
No 247
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=25.10 E-value=2e+02 Score=22.37 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccC
Q 024751 164 CQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 164 l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~sp 226 (263)
|.+.| +.-+=+.....+.+.++++..++.-++..-+|.+...+ ..+.++|.++||.+..+.-
T Consensus 62 L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 62 LRKLG-IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHHTT-S-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred HHhcC-cceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECC
Confidence 44555 44444555567888888887776655555566655443 5689999999999977543
No 248
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=25.08 E-value=2.5e+02 Score=24.02 Aligned_cols=64 Identities=16% Similarity=0.009 Sum_probs=46.5
Q ss_pred HHcCCccEEEe-cCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEccCCCC
Q 024751 165 QRHGLTKSIGV-SNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 165 ~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~spl~~ 229 (263)
.++|+. .+|+ ++.....+.+++...+++++++=.+..+++.. ..++..|+..|+..+..-|-..
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~ 73 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE 73 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC
Confidence 344654 3443 34445567777777889999999999988765 5788889999998888776654
No 249
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.06 E-value=5.5e+02 Score=23.71 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=60.7
Q ss_pred CcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCC
Q 024751 65 LYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDI 144 (263)
Q Consensus 65 ~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~ 144 (263)
.||.++.+-++|++..+.. +.+-++|.|-.-+. .--+++..-+++.-++.....+.++.++.|......
T Consensus 65 VfGg~~kL~~aI~~~~~~~---~P~~I~V~ttc~~~-iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~------- 133 (429)
T cd03466 65 VYGGEKNLKKGLKNVIEQY---NPEVIGIATTCLSE-TIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTH------- 133 (429)
T ss_pred EECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHH-HhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccH-------
Confidence 5788999999998875442 34556676665322 101233333333222211124678888877543210
Q ss_pred CccccccCCHHHHHHHHHH-HH----HcCCccEEEecC--CCHHHHHHHHHhCCCCC
Q 024751 145 PEEDLVSLDYNGVWEAMEE-CQ----RHGLTKSIGVSN--FSPKKIETILAFATIPP 194 (263)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~-l~----~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~ 194 (263)
..-...++++|-+ +. +.+.|.-||-.+ .+.+.+.++++..++++
T Consensus 134 ------~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 134 ------VEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred ------HHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 0013334444433 22 256788887433 34577889999887765
No 250
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=25.06 E-value=2.3e+02 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhc
Q 024751 205 WQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETEREL 260 (263)
Q Consensus 205 ~~~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~ 260 (263)
.+|..+.+.+.+-++-++.-++-.+ +..+|.++|++++. ++-++
T Consensus 201 nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns~rL~eiA~~~g~-~aylI 244 (294)
T COG0761 201 NRQDAVKELAPEVDLVIVVGSKNSS-----------NSNRLAEIAKRHGK-PAYLI 244 (294)
T ss_pred hHHHHHHHHhhcCCEEEEECCCCCc-----------cHHHHHHHHHHhCC-CeEEe
Confidence 3556788888998888888666654 66789999999998 54443
No 251
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=25.03 E-value=3.3e+02 Score=22.79 Aligned_cols=73 Identities=8% Similarity=-0.001 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC----CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG----TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 115 (263)
.+.++..++.+.+.++|..|+=|+..|+ +.+.+....+.. +.+ +..|....-.+.++..+-++..-
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~--------~~~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV--------GPR--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh--------CCC--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 4678889999999999999999999884 444444333322 221 23333333345577777777766
Q ss_pred HHhCCCc
Q 024751 116 KTLQIEY 122 (263)
Q Consensus 116 ~~Lg~~~ 122 (263)
.++|+++
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 7777754
No 252
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.86 E-value=3.4e+02 Score=22.09 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHH--HHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYG-TERAL--GEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~l--G~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
++++...+.+.|.++|..++=|+..|. .-..+ -+.+++.+ +.+ +-.|....-.+.++..+-++....|
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~-------~~~--v~ik~aGGikt~~~~l~~~~~g~~r 199 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV-------GGR--VGVKAAGGIRTLEDALAMIEAGATR 199 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCC--ceEEEeCCCCCHHHHHHHHHhChhh
Confidence 578889999999999999999997775 11111 13344331 111 2334322222567777777777777
Q ss_pred hCCC
Q 024751 118 LQIE 121 (263)
Q Consensus 118 Lg~~ 121 (263)
+|++
T Consensus 200 iG~s 203 (203)
T cd00959 200 IGTS 203 (203)
T ss_pred ccCC
Confidence 7763
No 253
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=24.74 E-value=2.6e+02 Score=24.44 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCC---------cC--C-------HHHHHHHHHHHHhcCCCCCCccEEEeeCCCC----
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASL---------YG--T-------ERALGEAIAEALKLGLVASREELFITTKLWC---- 99 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~---------Yg--s-------e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~---- 99 (263)
-+...+++++..+.||++|=.++. ++ - -+.+|+.+++ ..+.++..=..
T Consensus 44 l~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~----------~~iRls~HP~qf~vL 113 (275)
T PF03851_consen 44 LEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE----------NGIRLSMHPDQFTVL 113 (275)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH----------TT-EEEE---TT--T
T ss_pred HHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH----------cCCeEEecCCcceeC
Confidence 456778888889999999965551 12 1 2334544443 34677766421
Q ss_pred CCCChhHHHHHHHH------HHHHhCCCcc--cEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCcc
Q 024751 100 SDAHRDLVVPALKK------SLKTLQIEYV--DLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTK 171 (263)
Q Consensus 100 ~~~~~~~i~~~~~~------sL~~Lg~~~i--Dl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir 171 (263)
...+++-+.++++. .|+.||.+.- ..+.+|--..+... ......+.+.|..|.+-+++
T Consensus 114 nSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK----------~~al~RF~~~~~~L~~~ir~---- 179 (275)
T PF03851_consen 114 NSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDK----------EAALERFIENFKRLPESIRK---- 179 (275)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-H----------HHHHHHHHHHHHT--HHHHT----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCCh----------HHHHHHHHHHHhhCCHhhhh----
Confidence 12234555555544 3788998877 89999965333210 00111233334444333332
Q ss_pred EEEec----CCCHHHHHHHHHhCCCCCeeeccc
Q 024751 172 SIGVS----NFSPKKIETILAFATIPPTVNQVE 200 (263)
Q Consensus 172 ~iGvs----~~~~~~l~~~~~~~~~~~~~~q~~ 200 (263)
.+-+- +|+.+.+-.+.+..+++.++--.+
T Consensus 180 rL~lENDd~~yt~~d~L~ic~~~giP~VfD~hH 212 (275)
T PF03851_consen 180 RLTLENDDKTYTVEDVLPICEKLGIPMVFDYHH 212 (275)
T ss_dssp TEEEE--SSS--HHHHHHHHHHHT--EEEEHHH
T ss_pred cEEEecCCCccCHHHHHHHHHHhCCCEEEEhHH
Confidence 23333 356666667777777766554443
No 254
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=24.72 E-value=3.4e+02 Score=21.14 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCC
Q 024751 41 DESAMKSAVLESIKLGYRHFDTAS 64 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~ 64 (263)
.++.+...++.|++.|...|++--
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv 34 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDV 34 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEe
Confidence 468889999999999999886543
No 255
>PRK07714 hypothetical protein; Provisional
Probab=24.70 E-value=2.7e+02 Score=19.96 Aligned_cols=64 Identities=5% Similarity=-0.017 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
....+..|--.++.|++ -...+++.+.++......+++--..++- ....+..+|+.++|+++.+
T Consensus 3 ~~~~~~~Lgla~raGk~------v~G~~~v~~al~~g~~~lViiA~D~s~~-~~~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 3 MSDWKSFLGLANRARKV------ISGEELVLKEVRSGKAKLVLLSEDASVN-TTKKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHHHHHHHHHHhCCe------eecHHHHHHHHHhCCceEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEe
Confidence 34567777777888876 2234667777777776665554444332 2256888899999998754
No 256
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.59 E-value=59 Score=25.00 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCcEEeCCC
Q 024751 47 SAVLESIKLGYRHFDTAS 64 (263)
Q Consensus 47 ~~l~~A~~~Gi~~~DtA~ 64 (263)
..+...++.|||+||---
T Consensus 30 ~~i~~QL~~GiR~lDlrv 47 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRV 47 (146)
T ss_dssp HHHHHHHHTT--EEEEEE
T ss_pred HhHHHHHhccCceEEEEE
Confidence 468999999999998543
No 257
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=24.59 E-value=1.5e+02 Score=22.44 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhCC-CCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCC
Q 024751 179 SPKKIETILAFAT-IPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 179 ~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
+++.++++++.++ +.+.++-..-........+.+.|+..||++-.|+.=+.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccchhh
Confidence 4667777777654 33333333333333457899999999999998887654
No 258
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=24.50 E-value=3.7e+02 Score=22.60 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
.+++.+.+.++.....+|.+|+-+...+ |.... . -..+-++||+.+
T Consensus 21 ~~~~~l~~~l~~~~~~~Gf~~~~~~~~~-~~~~~------~---------------------------~~~~~~~nyP~~ 66 (240)
T PRK10188 21 AAAEEVYHELQLQTQQLEYDYYSLCVRH-PVPFT------R---------------------------PKVAFYTTYPEA 66 (240)
T ss_pred CCHHHHHHHHHHHHHHCCCccEeeeccc-CCCCC------C---------------------------CceEEecCCCHH
Confidence 4678999999999999998885442222 21110 0 013557899888
Q ss_pred HHHHHHHhC--CCCCeeeccc--cCCC-C------CcHHHHHHHHhCC----ceEEEccCCCCCCCC
Q 024751 182 KIETILAFA--TIPPTVNQVE--MNPA-W------QQRKLVEFCKSKS----IIVTAFSPLGAVGSS 233 (263)
Q Consensus 182 ~l~~~~~~~--~~~~~~~q~~--~~~~-~------~~~~~i~~~~~~g----i~v~a~spl~~~G~l 233 (263)
.++...+.. .++|++.... ..|+ | ...++++.++++| +.+-.+.|.+..|.+
T Consensus 67 W~~~Y~~~~y~~~DPvv~~~~~~~~P~~W~~~~~~~~~~~~~~a~~~Gl~~G~t~p~~~~~g~~g~~ 133 (240)
T PRK10188 67 WVSHYQAENYFAIDPVLKPENFSQGHLMWNDDLFSEAQALWDAARAHGLRRGVTQCLMLPNRALGFL 133 (240)
T ss_pred HHHHHHHCCCeeeCHHHHHHhcCCCCeeCCccccchHHHHHHHHHHcCCcceEEEEeecCCCCeEEE
Confidence 888877643 3666654322 1222 2 2256888888776 445555666544443
No 259
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.50 E-value=5.4e+02 Score=23.48 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcC-------CccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCC-----c-----HHHHHH
Q 024751 154 YNGVWEAMEECQRHG-------LTKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQ-----Q-----RKLVEF 213 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G-------~ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~-----~-----~~~i~~ 213 (263)
+.+.++++.+..++- .||++=|. |.+.+.++++.+... ....++-++||++.. . ..+.+.
T Consensus 242 l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~~~~~~~ps~e~v~~f~~~ 321 (372)
T PRK11194 242 IETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKV 321 (372)
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 566666666554432 34555444 455777666666543 345688899998642 1 246667
Q ss_pred HHhCCceEEEccCCC
Q 024751 214 CKSKSIIVTAFSPLG 228 (263)
Q Consensus 214 ~~~~gi~v~a~spl~ 228 (263)
.+++|+.+......|
T Consensus 322 L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 322 LMEYGFTVIVRKTRG 336 (372)
T ss_pred HHHCCCeEEEecCCC
Confidence 888999998866665
No 260
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.43 E-value=49 Score=19.33 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCchhhc
Q 024751 243 EALKQIAALQQGETEREL 260 (263)
Q Consensus 243 ~~l~~ia~~~~~t~~~~~ 260 (263)
..+..||++|+.+.+++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 468999999999988764
No 261
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.37 E-value=4.9e+02 Score=23.76 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=44.2
Q ss_pred CCCCCChhHHHHHHHHHHHHhCCCcccEEEee-cCCCC-----CCCccccCCCCccccccCCHHHHHH-HHHHHHHcCCc
Q 024751 98 WCSDAHRDLVVPALKKSLKTLQIEYVDLYLIH-WPMSA-----KPSEKLRNDIPEEDLVSLDYNGVWE-AMEECQRHGLT 170 (263)
Q Consensus 98 ~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh-~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~G~i 170 (263)
+.+..+.+.+++.++..++ |+.++|.+|.+. .|... ..+ ....|.. ....+.++ +.+.|.+.|..
T Consensus 170 GlPgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g-~~~~p~~------~~~~~~~~~~~~~L~~~Gy~ 241 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEG-NLILPHS------DAAAEMYEWTNHYLESKKYF 241 (390)
T ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcC-CCCCCCh------HHHHHHHHHHHHHHHHcCCc
Confidence 5567778889998988886 799999999886 33210 000 0011100 01122333 44567788875
Q ss_pred cEEEecCCCH
Q 024751 171 KSIGVSNFSP 180 (263)
Q Consensus 171 r~iGvs~~~~ 180 (263)
.+++|||..
T Consensus 242 -~yeis~fa~ 250 (390)
T PRK06582 242 -RYEISNYAK 250 (390)
T ss_pred -eeeceeeeC
Confidence 479999974
No 262
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=24.30 E-value=3e+02 Score=21.56 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=52.7
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHH--cCCccEEEecCCC
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR--HGLTKSIGVSNFS 179 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~ 179 (263)
.+.+.+.+.+++.-+.+|.+ +++++-.. -.+..+.+++..+ .|.|-.=|--+|.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN~-----------------------EGelId~i~~a~~~~dgiIINpga~THt 81 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSNH-----------------------EGELIDWIHEARGDVAGIVINPGAYTHT 81 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc-----------------------HHHHHHHHHHhhhcCCEEEEcchHHhhh
Confidence 35688888888888888863 55555431 4677788887754 3444444555666
Q ss_pred HHHHHHHHHhCCCCCeeeccccCCCCCc
Q 024751 180 PKKIETILAFATIPPTVNQVEMNPAWQQ 207 (263)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~ 207 (263)
.-.+..++.....+ ++.++++..+.+
T Consensus 82 SiAl~DAl~~~~~P--~VEVHiSNi~aR 107 (146)
T PRK13015 82 SVAIRDALAALELP--VIEVHISNVHAR 107 (146)
T ss_pred HHHHHHHHHcCCCC--EEEEEcCCcccc
Confidence 66777777766655 777788766554
No 263
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.29 E-value=5e+02 Score=22.93 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC-CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHh
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG-TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTL 118 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L 118 (263)
.+.++...+++.+.+.|+..|--+..-. -..-+-+.++...+.+ ...++.|+|-.. .+.+ .-+.|...
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~---~l~~i~itTNG~-------ll~~-~~~~L~~a 113 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP---GLEELSLTTNGS-------RLAR-FAAELADA 113 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC---CCceEEEEeChh-------HHHH-HHHHHHHc
Confidence 5678888999999999998775442111 1122334444331111 122455665432 1222 33445566
Q ss_pred CCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHhC
Q 024751 119 QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL----TKSIGVSNFSPKKIETILAFA 190 (263)
Q Consensus 119 g~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~ 190 (263)
|++++- +-++.+++..-. . . .....++.+++.++.+++.|. |..+.+...+.+++.++++.+
T Consensus 114 Gl~~v~-ISlDs~~~e~~~-~--i------~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~ 179 (329)
T PRK13361 114 GLKRLN-ISLDTLRPELFA-A--L------TRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFC 179 (329)
T ss_pred CCCeEE-EEeccCCHHHhh-h--h------cCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 766554 344443221100 0 0 011247889999999999885 233444456667776666654
No 264
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=24.17 E-value=93 Score=23.77 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=23.9
Q ss_pred eceeccccCCChHHHHHHHHHHHHcCCcEEeCCCCc
Q 024751 31 IGLGSAVDNIDESAMKSAVLESIKLGYRHFDTASLY 66 (263)
Q Consensus 31 iglG~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y 66 (263)
|+|+.. +.+++.++++.|+++|..-.+-+..|
T Consensus 75 i~ls~~----s~eevd~~v~ka~eaGGk~~~~~~d~ 106 (133)
T COG3607 75 ISLSAG----SREEVDELVDKALEAGGKPANEPQDE 106 (133)
T ss_pred EEeccC----cHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 455544 37899999999999999876555444
No 265
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=24.15 E-value=5.5e+02 Score=23.37 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=63.0
Q ss_pred hHHHHHHHHH--HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 024751 105 DLVVPALKKS--LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKK 182 (263)
Q Consensus 105 ~~i~~~~~~s--L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 182 (263)
.++...+++. |..-| .|++=+--| ..+..+++.+.++.=.|=-|+=-.|+...
T Consensus 39 ~Dv~atv~Qi~~L~~aG---ceiVRvav~----------------------~~~~a~al~~I~~~~~iPlvADIHFd~~l 93 (360)
T PRK00366 39 ADVEATVAQIKRLARAG---CEIVRVAVP----------------------DMEAAAALPEIKKQLPVPLVADIHFDYRL 93 (360)
T ss_pred hhHHHHHHHHHHHHHcC---CCEEEEccC----------------------CHHHHHhHHHHHHcCCCCEEEecCCCHHH
Confidence 4555555554 34555 467766666 35677899999988888888878899988
Q ss_pred HHHHHHhCCCCCeeeccccCCCC-CcHHHHHHHHhCCceEEE
Q 024751 183 IETILAFATIPPTVNQVEMNPAW-QQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~-~~~~~i~~~~~~gi~v~a 223 (263)
..++++.+--+..+|.-++--.. .-.++++.|+++|+++=.
T Consensus 94 Al~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRI 135 (360)
T PRK00366 94 ALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRI 135 (360)
T ss_pred HHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEE
Confidence 88887765434334444432111 125799999999998765
No 266
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=24.14 E-value=4.7e+02 Score=22.58 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=58.5
Q ss_pred CeeceeccccC------CChHHHHHHHHHHHHcCCcEEeCCCC-cC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCC
Q 024751 29 PVIGLGSAVDN------IDESAMKSAVLESIKLGYRHFDTASL-YG--TERALGEAIAEALKLGLVASREELFITTKLWC 99 (263)
Q Consensus 29 ~~iglG~~~~~------~~~~~~~~~l~~A~~~Gi~~~DtA~~-Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~ 99 (263)
..||++.|... -+.+...+-....+....|.++.-.. |. +++.+-++.++ ..+++.-+.|++.
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~--------~p~~FrFsvK~~~ 74 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE--------TPDDFRFSVKAPR 74 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh--------CCCCeEEEEEecc
Confidence 35677777654 12222223334445556777665554 44 78888888885 5899999999953
Q ss_pred CCC----Ch---hHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 024751 100 SDA----HR---DLVVPALKKSLKTLQIEYVDLYLIHWPMSA 134 (263)
Q Consensus 100 ~~~----~~---~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~ 134 (263)
.-- .. ..+.+.+.+-++.|| +++..+++.-|-..
T Consensus 75 ~iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 75 AITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred cccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 211 11 233344444455666 48999999988544
No 267
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.04 E-value=5.6e+02 Score=23.42 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=93.7
Q ss_pred eCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccc
Q 024751 61 DTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKL 140 (263)
Q Consensus 61 DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~ 140 (263)
+..-.||.++.+-++|++..+.. +.+-++|.|-..+.-. .+++..-+++.-++.+ +.++.+|.|......
T Consensus 63 E~d~VfGg~~~L~~~i~~~~~~~---~P~~i~v~~tC~~~~i-GdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~--- 132 (410)
T cd01968 63 EKDVIFGGEKKLYKAILEIIERY---HPKAVFVYSTCVVALI-GDDIDAVCKTASEKFG---IPVIPVHSPGFVGNK--- 132 (410)
T ss_pred ccceeeccHHHHHHHHHHHHHhC---CCCEEEEECCCchhhh-ccCHHHHHHHHHHhhC---CCEEEEECCCcccCh---
Confidence 34445889999999999876543 4556777777643211 1334333443333333 578888877542210
Q ss_pred cCCCCccccccCCHHHHHHHHHHHH---------HcCCccEEEecCC--CHHHHHHHHHhCCCCCeeeccccCCCC----
Q 024751 141 RNDIPEEDLVSLDYNGVWEAMEECQ---------RHGLTKSIGVSNF--SPKKIETILAFATIPPTVNQVEMNPAW---- 205 (263)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~~q~~~~~~~---- 205 (263)
..-...++++|-++. +.+.|.-||-.++ +.+.+.++++..++++...-....-+.
T Consensus 133 ----------~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~ 202 (410)
T cd01968 133 ----------NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRR 202 (410)
T ss_pred ----------hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh
Confidence 001334455544333 1467888884443 346789999988877543222211111
Q ss_pred ----------Cc---HHHHHHH-HhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCC
Q 024751 206 ----------QQ---RKLVEFC-KSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGE 255 (263)
Q Consensus 206 ----------~~---~~~i~~~-~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t 255 (263)
.+ ..+.++. ++.|++++...|+|- --.+..+++||+..|.+
T Consensus 203 ~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~---------~~t~~~l~~ia~~~g~~ 257 (410)
T cd01968 203 AHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGI---------RDTSKSLRNIAELLGDE 257 (410)
T ss_pred hhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcH---------HHHHHHHHHHHHHhCCc
Confidence 01 1234444 466999888766542 01246789999999876
No 268
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.92 E-value=3.8e+02 Score=21.48 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHhCCCcccEE
Q 024751 105 DLVVPALKKSLKTLQIEYVDLY 126 (263)
Q Consensus 105 ~~i~~~~~~sL~~Lg~~~iDl~ 126 (263)
..+.+.++. +...|.|++-+-
T Consensus 11 ~~~~~~~~~-~~~~g~d~i~~~ 31 (210)
T TIGR01163 11 ARLGEEVKA-VEEAGADWIHVD 31 (210)
T ss_pred HHHHHHHHH-HHHcCCCEEEEc
Confidence 444444433 345666665554
No 269
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=23.70 E-value=3.6e+02 Score=25.72 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=77.9
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHH
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR 166 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (263)
.+.+++|+..+...+.....+..-+++-+++-++.-=-+ -+.- .....++.......+..+++
T Consensus 350 ~~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI-~lEl----------------TER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 350 QHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQI-ALEL----------------TERTFADPKKMTPIILRLRE 412 (524)
T ss_pred hCcceEEEEeeeehhhcCchHHHHHHHHHHhcCcChHHh-eeeh----------------hhhhhcCchhhhHHHHHHHh
Confidence 466788888887777766778888888887776531110 0100 01123456777889999999
Q ss_pred cCCccEE---EecCCCHHHHHHH-HHhCCCCCeeec-cccCCCCC--cHHHHHHHHhCCceEEEcc--------------
Q 024751 167 HGLTKSI---GVSNFSPKKIETI-LAFATIPPTVNQ-VEMNPAWQ--QRKLVEFCKSKSIIVTAFS-------------- 225 (263)
Q Consensus 167 ~G~ir~i---Gvs~~~~~~l~~~-~~~~~~~~~~~q-~~~~~~~~--~~~~i~~~~~~gi~v~a~s-------------- 225 (263)
.|.--+| |..--|..-|..+ ++.-+++-++++ +.++.... -..+++.+++.|+.+++-+
T Consensus 413 aG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~LR~~G 492 (524)
T COG4943 413 AGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRG 492 (524)
T ss_pred cCCeEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHHHHHHHcC
Confidence 9986555 3221122222221 001112222211 11111111 1468888888888888743
Q ss_pred -CCCCCCCCCCCCCCCCcHHHHHHHHHh
Q 024751 226 -PLGAVGSSWGTNQVMNNEALKQIAALQ 252 (263)
Q Consensus 226 -pl~~~G~l~~~~~~l~~~~l~~ia~~~ 252 (263)
++| ||.+++++-.. +.+.+++++.
T Consensus 493 v~~g-QGW~fskaLp~--q~Fi~~~~q~ 517 (524)
T COG4943 493 VHYG-QGWLFSKALPA--QAFLDWAEQQ 517 (524)
T ss_pred Cccc-cccccCCCCCH--HHHHHHHHhC
Confidence 344 57776643222 3455555544
No 270
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=23.66 E-value=5.4e+02 Score=23.14 Aligned_cols=126 Identities=24% Similarity=0.227 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCcEE----eCCCC-----cC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHH
Q 024751 46 KSAVLESIKLGYRHF----DTASL-----YG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKK 113 (263)
Q Consensus 46 ~~~l~~A~~~Gi~~~----DtA~~-----Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~ 113 (263)
.+.++...++|+|.+ +|... .+ +.+.+-++++...+.|+ + .+-+-.=++.+..+.+.+.+.++.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~--~--~v~~dli~GlPgqt~~~~~~~l~~ 175 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGF--D--NISIDLIYALPGQTIEDFKESLAK 175 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCC--C--cEEEeeecCCCCCCHHHHHHHHHH
Confidence 355666667799887 33331 11 34445566666533342 1 122222234556677888777776
Q ss_pred HHHHhCCCcccEEEee-cCCCCC--CCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 024751 114 SLKTLQIEYVDLYLIH-WPMSAK--PSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSP 180 (263)
Q Consensus 114 sL~~Lg~~~iDl~~lh-~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 180 (263)
. .+++.+++.++.+. .|.... ....-..+.+.. .......-.+++.|.+.|. ..+++++|..
T Consensus 176 ~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa~ 240 (377)
T PRK08599 176 A-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGE---DLEAEMYEYLMDEMEAHGF-HQYEISNFAK 240 (377)
T ss_pred H-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCH---HHHHHHHHHHHHHHHHcCC-cEeeeeeeeC
Confidence 4 56898888887654 221100 000000000000 1111222336677888887 5689999964
No 271
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=23.62 E-value=2.2e+02 Score=21.14 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeee
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVN 197 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 197 (263)
.+.+.+.++.+.+.|+--=+|.+.|+.++++++-+.+.--|.+.
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEE
Confidence 57788889999999998889999999999988888766544444
No 272
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=23.62 E-value=3.3e+02 Score=23.36 Aligned_cols=63 Identities=16% Similarity=0.346 Sum_probs=38.9
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccc----------------------------cCCC----CCcHHHH
Q 024751 164 CQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVE----------------------------MNPA----WQQRKLV 211 (263)
Q Consensus 164 l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~----------------------------~~~~----~~~~~~i 211 (263)
+++.+.-+.|=+|+|+++.+..+.+...--+...... +++. ....+++
T Consensus 164 i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 243 (282)
T cd08605 164 CKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNPTAV 243 (282)
T ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhhcCcHHH
Confidence 3455666778899999999988766433111111110 0000 0134688
Q ss_pred HHHHhCCceEEEccC
Q 024751 212 EFCKSKSIIVTAFSP 226 (263)
Q Consensus 212 ~~~~~~gi~v~a~sp 226 (263)
+.|+++|+.+.+|..
T Consensus 244 ~~~~~~Gl~v~vWTv 258 (282)
T cd08605 244 SLVKASGLELGTYGK 258 (282)
T ss_pred HHHHHcCcEEEEeCC
Confidence 888999999999886
No 273
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.60 E-value=5e+02 Score=23.68 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccc-----c-CCCCCcHHHHHHHHhCCceEEE
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVE-----M-NPAWQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~-----~-~~~~~~~~~i~~~~~~gi~v~a 223 (263)
.+...+.++++++.|..-.++++.-+...+.+.+....++..++... | +.-.....+.+++++.++.|++
T Consensus 117 p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa 192 (368)
T PRK08649 117 PELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV 192 (368)
T ss_pred HHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE
Confidence 34556667777776654456665555566666666677775555321 1 1111234578888888888887
No 274
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=23.52 E-value=2.6e+02 Score=20.57 Aligned_cols=63 Identities=8% Similarity=0.091 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
.++...|--.++.|++ .....+..+.++......+++--..+.. ...++..+|+.++|+++.|
T Consensus 11 ~~i~~~Lgla~raGKl------v~G~~~vlkalk~gkaklViiA~D~~~~-~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 11 ESINSKLQLVMKSGKY------TLGTKSTLKALRNGKAKLVIISNNCPPI-RRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred hhHHHHHHHHHHhCCe------eecHHHHHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHhhcCCCEEEe
Confidence 4455567777788876 2334666677776666665654443321 1256888899999988765
No 275
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.49 E-value=3.6e+02 Score=21.02 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHh--CCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTL--QIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEEC 164 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~L--g~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (263)
.|=-+.|+-|++.....+..+++.+.++++.+ .....|++++-.+... ..+..++.+.|..|
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~----------------~~~~~~l~~~l~~L 111 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAA----------------KASNPQLRDAFLRL 111 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcc----------------cCCHHHHHHHHHHH
Confidence 46667777777655666788888888888754 2234488888776432 22366777777776
Q ss_pred HHc
Q 024751 165 QRH 167 (263)
Q Consensus 165 ~~~ 167 (263)
.+.
T Consensus 112 L~k 114 (145)
T PRK04820 112 LRR 114 (145)
T ss_pred HHH
Confidence 554
No 276
>PLN02494 adenosylhomocysteinase
Probab=23.48 E-value=1.8e+02 Score=27.63 Aligned_cols=55 Identities=16% Similarity=-0.053 Sum_probs=40.9
Q ss_pred EEEecCCCHHHHHH---HHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCC
Q 024751 172 SIGVSNFSPKKIET---ILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 172 ~iGvs~~~~~~l~~---~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
-|+.|-|-..+..- .+...+-. +....+||+..|.++.....+.||.|++|..-.
T Consensus 48 ~i~~~lHl~~kTa~L~~tL~~~GA~--v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~ 105 (477)
T PLN02494 48 RITGSLHMTIQTAVLIETLTALGAE--VRWCSCNIFSTQDHAAAAIARDSAAVFAWKGET 105 (477)
T ss_pred EEEEEEechHHHHHHHHHHHHcCCE--EEEEcCCCccchHHHHHHHHhCCceEEEecCCC
Confidence 57888886554333 33444433 566789999999999999999999999998664
No 277
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.45 E-value=3.7e+02 Score=21.08 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCcEEeCCCCcC---C--HHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCC-CChhHHHHHHHHHH
Q 024751 42 ESAMKSAVLESIKLGYRHFDTASLYG---T--ERALGEAIAEALKLGLVASREELFITTKLWCSD-AHRDLVVPALKKSL 115 (263)
Q Consensus 42 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg---s--e~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~-~~~~~i~~~~~~sL 115 (263)
.+++.+..+.|.+.|...+...+.|+ + ++.+-+.+++..+. -+.++-+..+..+.. .+++.+.+..+. +
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~pv~iy~~p~~~~~~~~~~~~~~~-~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA----ADGGLPLKVILETRGLKTADEIAKAARI-A 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH----hcCCceEEEEEECCCCCCHHHHHHHHHH-H
Confidence 57889999999999999999766654 3 56666666655322 011233333332222 245555444333 3
Q ss_pred HHhCCCcc
Q 024751 116 KTLQIEYV 123 (263)
Q Consensus 116 ~~Lg~~~i 123 (263)
+..|++.+
T Consensus 139 ~~~g~~~i 146 (201)
T cd00945 139 AEAGADFI 146 (201)
T ss_pred HHhCCCEE
Confidence 55665443
No 278
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=23.39 E-value=2.9e+02 Score=26.27 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKT 117 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~ 117 (263)
.+.+-+.+++.+..++|.+.|.-++.-| +....|+.++.. +.++. .|+++.|++.+..... --..+.+.. ..
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~-~tn~~-~~e~v~Is~HcHND~G---~a~Ant~~g-~~ 274 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYL-KTNTP-GREKVCISTHCHNDLG---CATANTELG-LL 274 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHH-HccCC-CceeEEEEEeecCCcc---HHHHHHHHH-hh
Confidence 5677899999999999999998888877 677788888754 44443 6999999999854321 111111111 22
Q ss_pred hCCCcccEEEeecC
Q 024751 118 LQIEYVDLYLIHWP 131 (263)
Q Consensus 118 Lg~~~iDl~~lh~p 131 (263)
-|-+++|..++-.-
T Consensus 275 AGA~~VE~~i~GiG 288 (560)
T KOG2367|consen 275 AGARQVEVTINGIG 288 (560)
T ss_pred cCcceEEEEeeccc
Confidence 37789999988765
No 279
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=23.38 E-value=16 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=24.3
Q ss_pred HHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCchhhcc
Q 024751 211 VEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQGETERELG 261 (263)
Q Consensus 211 i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~t~~~~~~ 261 (263)
.++++.-||.--..+-+.. +....+.-..+.+||.-++++|+++++
T Consensus 14 ~~La~~~gis~~tl~~~~~-----~~~~~~~~~~l~~ia~~l~~~~~el~~ 59 (63)
T PF13443_consen 14 KDLARKTGISRSTLSRILN-----GKPSNPSLDTLEKIAKALNCSPEELFE 59 (63)
T ss_dssp HHHHHHHT--HHHHHHHHT-----TT-----HHHHHHHHHHHT--HHHCTE
T ss_pred HHHHHHHCcCHHHHHHHHh-----cccccccHHHHHHHHHHcCCCHHHHhh
Confidence 3444555554444444433 222345567899999999999999886
No 280
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=1.3e+02 Score=24.75 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 180 PKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
.+.++-+++...++|-+ ++.+++|++++|.++.-|
T Consensus 62 ~Eile~llk~i~Idp~f-----------Kef~e~ike~di~fiVvS 96 (220)
T COG4359 62 EEILEFLLKDIKIDPGF-----------KEFVEWIKEHDIPFIVVS 96 (220)
T ss_pred HHHHHHHHhhcccCccH-----------HHHHHHHHHcCCCEEEEe
Confidence 44455555556666432 689999999999998754
No 281
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=23.31 E-value=2.1e+02 Score=24.83 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=34.7
Q ss_pred EEEecCCCHH---HHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCC
Q 024751 172 SIGVSNFSPK---KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 172 ~iGvs~~~~~---~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl 227 (263)
.|+.|-|-.. .+.+.+...+-. +.-..+||+..+.++..+..+.||.|.+|.--
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~GAe--V~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ge 101 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKALGAE--VRWTGSNPLSTQDDVAAALAEEGIPVFAWKGE 101 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTEE--EEEEESSTTT--HHHHHHHHHTTEEEEE-TT-
T ss_pred EEEEEEechHHHHHHHHHHHHcCCe--EEEecCCCcccchHHHHHhccCCceEEEeCCC
Confidence 5777777433 345555555533 55567899999999999999999999998644
No 282
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.25 E-value=5.5e+02 Score=23.05 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCC------c----HHHHHHHH
Q 024751 153 DYNGVWEAMEECQRHGL----TKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQ------Q----RKLVEFCK 215 (263)
Q Consensus 153 ~~~~~~~~l~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~i~~~~ 215 (263)
.+.+.++++.++.++.. |+++=+. |.+.+.+.++.+..+ ....++-++||++.. . ..+.+..+
T Consensus 228 ~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 307 (343)
T PRK14468 228 SIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLE 307 (343)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 47888889887766543 2344443 455666666655433 345577778887542 1 23555677
Q ss_pred hCCceEEEccCCCC
Q 024751 216 SKSIIVTAFSPLGA 229 (263)
Q Consensus 216 ~~gi~v~a~spl~~ 229 (263)
++|+.+......|.
T Consensus 308 ~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 308 RRGVPVSVRWSRGR 321 (343)
T ss_pred HCCCeEEEeCCCCc
Confidence 89999998877764
No 283
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.23 E-value=4.5e+02 Score=22.09 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC-------HHHHHHHHHhCCCCCeeeccccCCCC---------------------
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFS-------PKKIETILAFATIPPTVNQVEMNPAW--------------------- 205 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~-------~~~l~~~~~~~~~~~~~~q~~~~~~~--------------------- 205 (263)
...-+++-.+|++.|||+++=+|..| +..+.+-+...++++...-..|--+.
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 45567788999999999999998654 44455555555554443333332221
Q ss_pred Cc---HHHHHHHHhCCceEEEccCC
Q 024751 206 QQ---RKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 206 ~~---~~~i~~~~~~gi~v~a~spl 227 (263)
++ +..+=.|+.+||.-+++..=
T Consensus 158 Q~FHceRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 158 QRFHCERALFIARQMGIDAICFAAP 182 (235)
T ss_pred cccccHHHHHHHHHhCCceEEecCC
Confidence 11 34555688888887776543
No 284
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=22.99 E-value=3.3e+02 Score=27.57 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=47.3
Q ss_pred HHHHHHHHH--HHHHcCCccEEEecCCCHHHH---------------HHHHHhCCCCCeeeccccCCCCCcHHHHHHHHh
Q 024751 154 YNGVWEAME--ECQRHGLTKSIGVSNFSPKKI---------------ETILAFATIPPTVNQVEMNPAWQQRKLVEFCKS 216 (263)
Q Consensus 154 ~~~~~~~l~--~l~~~G~ir~iGvs~~~~~~l---------------~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~ 216 (263)
...+.+.++ +|.++ |.-+|++.-..+.+ +.++..+-++..++-.++. ...+.+.|+.
T Consensus 246 ~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~R~~~gv~~~Gn~~~qe~~i~TGavD~~VvD~QCi----~p~l~~~a~c 319 (784)
T TIGR00314 246 GRPIADYLEENGMEDE--VELCGICCTAIDMTRYNAKAKIVGPLSRQLRVIRAGVADVIIVDEQCI----RADILEECKK 319 (784)
T ss_pred HHHHHHHHhChhHHHH--hceeeeeccccHHhhhccCCcccCcHHHHHHHHHcCCCcEEEEecccC----cccHHHHHHh
Confidence 455666666 55555 87788876655533 2223333344444433321 2578999999
Q ss_pred CCceEEEccCCCCCCCC
Q 024751 217 KSIIVTAFSPLGAVGSS 233 (263)
Q Consensus 217 ~gi~v~a~spl~~~G~l 233 (263)
.++.+++.++.+..|+.
T Consensus 320 ~~tklItTs~ka~~gl~ 336 (784)
T TIGR00314 320 MGIPLIATNDKACLGLP 336 (784)
T ss_pred cCCeEEEcchHHhcCCC
Confidence 99999999999887775
No 285
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=22.95 E-value=2.2e+02 Score=26.19 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCc--c-EEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEEc
Q 024751 157 VWEAMEECQRHGLT--K-SIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 157 ~~~~l~~l~~~G~i--r-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a~ 224 (263)
-++.+.+|++.-.+ . .-|-+.++...+..+++...++ ++|....-+- .-.++.+.|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~D--ivq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCID--IIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCC--EEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46678888876442 1 2367778889999999876555 7777765432 2367999999999998775
No 286
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=22.86 E-value=9.6e+02 Score=25.74 Aligned_cols=87 Identities=10% Similarity=-0.025 Sum_probs=54.7
Q ss_pred EEecCCCHHHHHHHHHhCCCCCeeeccccCCCCC-cHHHHHHHHhCCceEEEccCCCCCCCCCCCC-CCCCcHHHHHHHH
Q 024751 173 IGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ-QRKLVEFCKSKSIIVTAFSPLGAVGSSWGTN-QVMNNEALKQIAA 250 (263)
Q Consensus 173 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~~i~~~~~~gi~v~a~spl~~~G~l~~~~-~~l~~~~l~~ia~ 250 (263)
|-|=+++++.++..++...-++.+|-++.-.... -.++++.|+++|..++.+.--. .|...... ..--.....+.+.
T Consensus 418 lsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de-~G~p~t~e~r~~i~~~~~~~~~ 496 (1178)
T TIGR02082 418 LMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDE-EGQARTADRKIEICKRAYNILT 496 (1178)
T ss_pred EEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 5566888999999999865567777444322212 2479999999999999986333 35432111 1111233445555
Q ss_pred H-hCCCchhhc
Q 024751 251 L-QQGETEREL 260 (263)
Q Consensus 251 ~-~~~t~~~~~ 260 (263)
+ +|++++.++
T Consensus 497 ~~~Gi~~edIi 507 (1178)
T TIGR02082 497 EKVGFPPEDII 507 (1178)
T ss_pred HHcCCCHHHEE
Confidence 4 999988765
No 287
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.80 E-value=5.7e+02 Score=23.05 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcC--C--ccEEEec--CCCHHHHHHHHHhCC-CCCeeeccccCCCCC------c----HHHHHHHH
Q 024751 153 DYNGVWEAMEECQRHG--L--TKSIGVS--NFSPKKIETILAFAT-IPPTVNQVEMNPAWQ------Q----RKLVEFCK 215 (263)
Q Consensus 153 ~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~i~~~~ 215 (263)
..+++++++.+....+ . ++++=+. |.+.+.+.++.+... .+..++-++||+... . ..+....+
T Consensus 232 ~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 232 PLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3677788877766544 2 2344444 555677777766543 445678888887642 1 24566788
Q ss_pred hCCceEEEccCCCC
Q 024751 216 SKSIIVTAFSPLGA 229 (263)
Q Consensus 216 ~~gi~v~a~spl~~ 229 (263)
++||.+......|.
T Consensus 312 ~~gi~v~vR~~~G~ 325 (349)
T PRK14463 312 DKHVTVITRSSRGS 325 (349)
T ss_pred HCCceEEEeCCCCc
Confidence 99999999888874
No 288
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.64 E-value=1.9e+02 Score=21.32 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEec
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVS 176 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs 176 (263)
+..+++.|+.+....+|.+++..++...+. ..+....++.|...| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~----------------~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRN----------------LVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCC----------------HHHHHHHHHHHHHCC-CEEEEec
Confidence 455666666666678899999988765442 556677777777765 4555443
No 289
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.62 E-value=6.1e+02 Score=23.35 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=87.9
Q ss_pred CCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCC
Q 024751 64 SLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRND 143 (263)
Q Consensus 64 ~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~ 143 (263)
-.||.++.+-++|++..+.. ..+-++|.+-..+.-. -+++..-+++.-++++ +.++.+|.|...... .
T Consensus 69 vVfGg~~kL~~aI~~~~~~~---~P~~I~V~ttC~~~iI-GdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~--~--- 136 (426)
T cd01972 69 VVFGGEKKLEDTIKEAYSRY---KPKAIFVATSCATGII-GDDVESVVEELEDEIG---IPVVALHCEGFKGKH--W--- 136 (426)
T ss_pred eecchHHHHHHHHHHHHHhC---CCCEEEEECCChHHHh-ccCHHHHHHHHHHhhC---CCEEEEeCCccCCcc--H---
Confidence 35788888999998875432 4556778777633211 1223333333333344 678999987543210 0
Q ss_pred CCccccccCCHHHHHHHHHHHH--------HcCCccEEEecCC-------CHHHHHHHHHhCCCCCeeeccccCC-----
Q 024751 144 IPEEDLVSLDYNGVWEAMEECQ--------RHGLTKSIGVSNF-------SPKKIETILAFATIPPTVNQVEMNP----- 203 (263)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~--------~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~~~q~~~~~----- 203 (263)
..-...+++++-+.. +++.|.-||..+. +.+.+.++++..++++......-.-
T Consensus 137 -------~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~ 209 (426)
T cd01972 137 -------RSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELE 209 (426)
T ss_pred -------hHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence 001334444444322 2456888887653 3578999999888765443222111
Q ss_pred ---------CCCc---HHHHHHH-HhCCceEEEcc-CCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 204 ---------AWQQ---RKLVEFC-KSKSIIVTAFS-PLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 204 ---------~~~~---~~~i~~~-~~~gi~v~a~s-pl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
.... ..+.++. ++.||+++... |+|-. -.+..+++||+..|+
T Consensus 210 ~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~---------~T~~~l~~ia~~~g~ 265 (426)
T cd01972 210 RASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIE---------ATDKWLREIAKVLGM 265 (426)
T ss_pred hcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHH---------HHHHHHHHHHHHhCC
Confidence 1011 1233444 46799988654 55420 123456777777665
No 290
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=22.59 E-value=2.4e+02 Score=23.92 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEe----cC
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV----SN 177 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv----s~ 177 (263)
.+++.+-+.+.+.-+.-. .=-+.+..|-. ..+.++++++|.+|++.=+-+.+.+ -.
T Consensus 86 ~d~~~~adYl~~l~~aA~---P~~L~iEgP~d-----------------~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADE 145 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAA---PFKLRIEGPMD-----------------AGSREAQIEALAELREELDRRGINVEIVADE 145 (248)
T ss_dssp T-HHHHHHHHHHHHHHHT---TS-EEEE-SB-------------------SSHHHHHHHHHHHHHHHHHCT--EEEEE-T
T ss_pred CCHHHHHHHHHHHHHhcC---CCeeeeeCCcC-----------------CCChHHHHHHHHHHHHHHHhcCCCCeEEeeh
Confidence 356667666666554443 22344555522 1225777777777665433333443 23
Q ss_pred C--CHHHHHHHHHhCCCCCeeeccccCCC---CCcHHHHHHHHhCCceEEE
Q 024751 178 F--SPKKIETILAFATIPPTVNQVEMNPA---WQQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 178 ~--~~~~l~~~~~~~~~~~~~~q~~~~~~---~~~~~~i~~~~~~gi~v~a 223 (263)
| +.+.+..+.+....+ ++|+.-.-+ +..-+.+-+|+++|++...
T Consensus 146 WCNT~eDI~~F~da~A~d--mVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 146 WCNTLEDIREFADAKAAD--MVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp T--SHHHHHHHHHTT-SS--EEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred hcCCHHHHHHHHhcCCcC--EEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 3 578888888876555 788774322 1224678899999999775
No 291
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.43 E-value=5.8e+02 Score=23.01 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=37.6
Q ss_pred ccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCC---cHHHHHHHHhCCceEEEccCCCC
Q 024751 170 TKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQ---QRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 170 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
++..-+...+.+.++++++ .+.+.++.....|+... -.++.+.|+++|+.++.-..++.
T Consensus 111 ~~v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred cEEEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 4444444456777777765 34555555555555432 26789999999999997776643
No 292
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.43 E-value=2.1e+02 Score=27.27 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCC-------------CCCC----
Q 024751 41 DESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC-------------SDAH---- 103 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~-------------~~~~---- 103 (263)
+++...++.+...+.|++.+-|... .++|++. |+ + +...+|+.. +...
T Consensus 9 DK~~iv~lAk~L~~lGfeIiATgGT-------ak~L~e~---GI--~---v~~Vsk~TgfPEil~GRVKTLHP~IhgGiL 73 (511)
T TIGR00355 9 DKTGIVEFAQGLVERGVELLSTGGT-------AKLLAEA---GV--P---VTEVSDYTGFPEMMDGRVKTLHPKVHGGIL 73 (511)
T ss_pred CcccHHHHHHHHHHCCCEEEEechH-------HHHHHHC---CC--e---EEEeecccCCchhhCCccccCCchhhhhhh
Confidence 3566778888888999999977653 4777765 65 3 344455421 1100
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEee
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIH 129 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh 129 (263)
...-.+. .+.|+..|+..||++.+.
T Consensus 74 arr~~~~-~~~l~~~~I~~IDlVvvN 98 (511)
T TIGR00355 74 ARRGDDD-DADLEEHGIEPIDLVVVN 98 (511)
T ss_pred cCCCchH-HHHHHHcCCCceeEEEEe
Confidence 0111123 667888999999999997
No 293
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=22.42 E-value=1.9e+02 Score=24.37 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEe----cCCCHHHHHHHHHhCCCCCeeeccccCCCCC--cHHHHHHHHhCCceEEEccCC
Q 024751 154 YNGVWEAMEECQRHGLTKSIGV----SNFSPKKIETILAFATIPPTVNQVEMNPAWQ--QRKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~--~~~~i~~~~~~gi~v~a~spl 227 (263)
.++..++|..|+ +..|.. |.+-...++.+.+....+ .|.|+|. +.+++...-+.|..++.-++-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 566777777776 444543 334455567777766654 4667775 356777777777777766666
Q ss_pred CCCCCCC---CCCCCC--CcHHHHHHHHHhCCCchh
Q 024751 228 GAVGSSW---GTNQVM--NNEALKQIAALQQGETER 258 (263)
Q Consensus 228 ~~~G~l~---~~~~~l--~~~~l~~ia~~~~~t~~~ 258 (263)
+. |+.. | .++- .-+.+.+++++||+.|.-
T Consensus 145 a~-gL~~~~lG-r~i~~~~~e~l~~l~~~ygi~~~G 178 (223)
T COG2102 145 AE-GLDESWLG-RRIDREFLEELKSLNRRYGIHPAG 178 (223)
T ss_pred cc-CCChHHhC-CccCHHHHHHHHHHHHhcCCCccC
Confidence 64 6541 2 1111 136789999999998864
No 294
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=4.1e+02 Score=21.20 Aligned_cols=76 Identities=14% Similarity=-0.012 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCC-------CcHHHHHHHHhCCceEEEccC
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAW-------QQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~-------~~~~~i~~~~~~gi~v~a~sp 226 (263)
-+++++.--+--++.-|++|=|.+-+-....++++...-+.-++-+.++.-. .+.++-+..+++|..|+.-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 4556665555556677899988877776666666654422223333333322 136788999999999988665
Q ss_pred CCC
Q 024751 227 LGA 229 (263)
Q Consensus 227 l~~ 229 (263)
.-+
T Consensus 92 alS 94 (186)
T COG1751 92 ALS 94 (186)
T ss_pred hhh
Confidence 443
No 295
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=22.20 E-value=1e+02 Score=27.19 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcC---CcEEeCCCCcC----CHHHHHHHHHH
Q 024751 44 AMKSAVLESIKLG---YRHFDTASLYG----TERALGEAIAE 78 (263)
Q Consensus 44 ~~~~~l~~A~~~G---i~~~DtA~~Yg----se~~lG~al~~ 78 (263)
.+.++++.|=+.| ++||||+..|. -|+.-+++|..
T Consensus 138 KAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~ 179 (317)
T COG0825 138 KALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 179 (317)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHH
Confidence 5778888898888 47999999996 25555556544
No 296
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=22.08 E-value=5.5e+02 Score=22.62 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCC
Q 024751 157 VWEAMEECQRHGLT-KSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 157 ~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~ 229 (263)
.++.+.+|++.-.+ -..|=|-++...+..+++....+ ++|+.....---.++.+.|+.+||.++..+.+.+
T Consensus 205 ~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d--~v~ik~~k~GGi~~~~~~a~~~gi~~~~~~~~es 276 (320)
T PRK02714 205 QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG--IFVIKPAIAGSPSRLRQFCQQHPLDAVFSSVFET 276 (320)
T ss_pred cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC--EEEEcchhcCCHHHHHHHHHHhCCCEEEEechhh
Confidence 35666667654332 35566677788888888765444 5555554433335678899999999998766644
No 297
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.03 E-value=3.5e+02 Score=24.40 Aligned_cols=99 Identities=10% Similarity=0.166 Sum_probs=56.3
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHHhCC-CCCeee
Q 024751 125 LYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH-GL---TKSIGVS--NFSPKKIETILAFAT-IPPTVN 197 (263)
Q Consensus 125 l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~ 197 (263)
.+.||.|+...+. --.|.. .....+++++++.++.++ |+ ++++=+. |.+.+.++++.+... ....++
T Consensus 215 aiSLhA~~~e~R~--~l~Pi~----~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVn 288 (342)
T PRK14465 215 AISLNHPDPNGRL--QIMDIE----EKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKIN 288 (342)
T ss_pred EEEecCCChhhcc--eEeecc----ccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEE
Confidence 3567888654432 111111 012367888888877644 22 2244343 455555555555432 234577
Q ss_pred ccccCCCCC----c-----HHHHHHHHhCCceEEEccCCCC
Q 024751 198 QVEMNPAWQ----Q-----RKLVEFCKSKSIIVTAFSPLGA 229 (263)
Q Consensus 198 q~~~~~~~~----~-----~~~i~~~~~~gi~v~a~spl~~ 229 (263)
-++||+... . ..+.+..+++||.+......|.
T Consensus 289 LIPyN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 289 VIPLNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 778886431 1 3466678899999999888764
No 298
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=21.94 E-value=6e+02 Score=24.19 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCC-----CCCChhHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWC-----SDAHRDLVVPALKKS 114 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~-----~~~~~~~i~~~~~~s 114 (263)
.+.+...+-++..+.+|++||=. -|..-+.+-+.-. +.-.|+.+ |+.
T Consensus 215 R~~e~Vv~EVkaLY~~GvrhFRl------------------------GRQ~difsy~~~~~g~e~P~PnPeal----ekL 266 (560)
T COG1031 215 RPPEDVVEEVKALYRAGVRHFRL------------------------GRQADIFSYGADDNGGEVPRPNPEAL----EKL 266 (560)
T ss_pred CCHHHHHHHHHHHHHhccceeee------------------------ccccceeeecccccCCCCCCCCHHHH----HHH
Confidence 67788888888888999999831 2333344433321 12234444 333
Q ss_pred HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
++....-..++-.||-.+. .|....++ .....++.+.+.++-.-|-|-+.|+-++++.
T Consensus 267 ~~Gir~~AP~l~tLHiDNa--------NP~tIa~y-p~eSr~i~K~ivky~TpGnVaAfGlEsaDp~ 324 (560)
T COG1031 267 FRGIRNVAPNLKTLHIDNA--------NPATIARY-PEESREIAKVIVKYGTPGNVAAFGLESADPR 324 (560)
T ss_pred HHHHHhhCCCCeeeeecCC--------CchhhhcC-hHHHHHHHHHHHhhCCCCceeeeeccccCHH
Confidence 3333333456666773221 11111111 1124677888888889999999999887644
No 299
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=21.92 E-value=3.4e+02 Score=20.21 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=35.7
Q ss_pred CccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC----C--cccEEEeecCCC
Q 024751 88 REELFITTKLWCSDAHRDLVVPALKKSLKTLQI----E--YVDLYLIHWPMS 133 (263)
Q Consensus 88 R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~----~--~iDl~~lh~p~~ 133 (263)
|=.+.|+-|+......+..+++.+.++++.... . -.|++++-.+..
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~ 98 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGF 98 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCc
Confidence 667888889766566678999999999987754 2 579999998743
No 300
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.92 E-value=5.8e+02 Score=22.81 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCCe
Q 024751 158 WEAMEECQRHGLTKSIGVSNF-SPKKIETILAFATIPPT 195 (263)
Q Consensus 158 ~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~ 195 (263)
|+.....++.=.+--|++.+. +++.++++++....+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V 312 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCee
Confidence 444455555445666777764 78889999887665543
No 301
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=21.92 E-value=3.1e+02 Score=24.59 Aligned_cols=71 Identities=7% Similarity=-0.050 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCcEEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCc
Q 024751 45 MKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEY 122 (263)
Q Consensus 45 ~~~~l~~A~~~Gi~~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~ 122 (263)
..+....++++|+|.+|+.+...+....-+.+.+..+ ....+.+.+-.|.+.+ ..+.+-+.+++--=|.+|
T Consensus 73 h~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk-----~~g~vsvi~~GwDPG~--~si~r~~~ea~lp~g~~y 143 (324)
T TIGR01921 73 DIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAK-----AAGNVSVISTGWDPGM--FSINRVYGEAVLPKGQTY 143 (324)
T ss_pred CHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHH-----HcCCEEEEECCCCcCh--HHHHHHHHhccCCCCcce
Confidence 3567788899999999998765543223334443311 1235777777777766 667766666654445444
No 302
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=21.91 E-value=5.9e+02 Score=22.91 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=46.0
Q ss_pred HHHcC-CccEEEecCCCHHHHHHHHHhCC-------------CCCeeeccccC-CCCCcHHHHHHHHhCCceEEEccCCC
Q 024751 164 CQRHG-LTKSIGVSNFSPKKIETILAFAT-------------IPPTVNQVEMN-PAWQQRKLVEFCKSKSIIVTAFSPLG 228 (263)
Q Consensus 164 l~~~G-~ir~iGvs~~~~~~l~~~~~~~~-------------~~~~~~q~~~~-~~~~~~~~i~~~~~~gi~v~a~spl~ 228 (263)
+.+.. .++-+||++-+.+..+++.+..+ ++.+++-+.-. +-....++...|-++|+.|++=.|++
T Consensus 21 l~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla 100 (343)
T TIGR01761 21 FAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLH 100 (343)
T ss_pred HHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCC
Confidence 33334 56778888777777666665433 23333322211 11122567777888888888888886
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 229 AVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 229 ~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
. -+-..+.+.|++.|+
T Consensus 101 ~----------~Ea~el~~~A~~~g~ 116 (343)
T TIGR01761 101 P----------RDIQDLLRLAERQGR 116 (343)
T ss_pred H----------HHHHHHHHHHHHcCC
Confidence 2 122445556665554
No 303
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=21.89 E-value=6.3e+02 Score=23.25 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=41.9
Q ss_pred HHHHHHHHHcC--CccEEEe--cCCCHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEE
Q 024751 158 WEAMEECQRHG--LTKSIGV--SNFSPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTA 223 (263)
Q Consensus 158 ~~~l~~l~~~G--~ir~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a 223 (263)
|+.+.+|.+.- .+.-+|= ..+++..+.++++....+ ++|+..+-+- .-.+++..|+++|+.++.
T Consensus 291 ~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d--~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 291 WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAAN--ALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCC--EEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 55666666662 4433331 235789999998876544 6666655432 235789999999999965
No 304
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.83 E-value=3.2e+02 Score=21.22 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccC
Q 024751 178 FSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~sp 226 (263)
.+.+.+.+++..++ .++++-+.-+|-.....+..+.+++|-.|+.-+|
T Consensus 4 ~~~~~i~~iL~~~K-~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 4 PEEEDIAEILKSAK-TIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred ccHHHHHHHHHhCc-eEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 34556666666554 3445544444444446788889999999998888
No 305
>PRK14851 hypothetical protein; Provisional
Probab=21.81 E-value=5.4e+02 Score=25.67 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCCCcc-----cEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 024751 107 VVPALKKSLKTLQIEYV-----DLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPK 181 (263)
Q Consensus 107 i~~~~~~sL~~Lg~~~i-----Dl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 181 (263)
+=..+-..|-++|+..+ |.+-+++.+. +......+......+.+-+.+.++--.-.|..+- ...+.+
T Consensus 54 lGs~va~~Lar~GVG~l~LvD~D~ve~sNLNR-------Q~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~-~~i~~~ 125 (679)
T PRK14851 54 VGGVHLITMVRTGIGRFHIADFDQFEPVNVNR-------QFGARVPSFGRPKLAVMKEQALSINPFLEITPFP-AGINAD 125 (679)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCEeccccccc-------CcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe-cCCChH
Confidence 44456677888888654 4444444322 1111111111112233334444444444444431 133456
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEccCCCCCCC
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGS 232 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~spl~~~G~ 232 (263)
.+.++++. ++.++.-.....+....-+.+.|++++|.++.-++.+-.|.
T Consensus 126 n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~ 174 (679)
T PRK14851 126 NMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSA 174 (679)
T ss_pred HHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccce
Confidence 67777764 45555433321122234688899999999999988876443
No 306
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=21.75 E-value=4.9e+02 Score=22.36 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEe
Q 024751 41 DESAMKSAVLESIKLGYRHFD 61 (263)
Q Consensus 41 ~~~~~~~~l~~A~~~Gi~~~D 61 (263)
-+|.+...++.|++.|..+++
T Consensus 19 ~PENTl~af~~A~~~Gad~iE 39 (290)
T cd08607 19 VRENTIASFLQAAEHGADMVE 39 (290)
T ss_pred CCccHHHHHHHHHHcCCCEEE
Confidence 467888999999999998774
No 307
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=21.73 E-value=4.3e+02 Score=23.08 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCC------------HHHHHHHHHhCC-CCCeeeccccCCCCC-c-HHHHHHHHhCC
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFS------------PKKIETILAFAT-IPPTVNQVEMNPAWQ-Q-RKLVEFCKSKS 218 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~------------~~~l~~~~~~~~-~~~~~~q~~~~~~~~-~-~~~i~~~~~~g 218 (263)
+...++..++|+++|++-.||=+.+. .+.+..+++.+. +++. +|++---... + .++-+++++.|
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~-vqLHtes~~~~~~~~i~~~ak~~G 184 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCA-VQLHTESLDEETYEEIAEMAKEAG 184 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCc-EEEecCCCChHHHHHHHHHHHHhC
Confidence 45566777899999988888766543 233444555443 5543 4444322222 2 46778888888
Q ss_pred c
Q 024751 219 I 219 (263)
Q Consensus 219 i 219 (263)
+
T Consensus 185 ~ 185 (285)
T COG1831 185 I 185 (285)
T ss_pred C
Confidence 5
No 308
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.73 E-value=5.2e+02 Score=22.23 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTAS 64 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 64 (263)
.+.++..++.....+.|+..||...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 4577778888888899999998864
No 309
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=21.71 E-value=19 Score=22.73 Aligned_cols=18 Identities=6% Similarity=0.016 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCchhhcc
Q 024751 244 ALKQIAALQQGETERELG 261 (263)
Q Consensus 244 ~l~~ia~~~~~t~~~~~~ 261 (263)
.+.++|+++|+++.+++.
T Consensus 5 ~V~elAk~l~v~~~~ii~ 22 (54)
T PF04760_consen 5 RVSELAKELGVPSKEIIK 22 (54)
T ss_dssp -TTHHHHHHSSSHHHHHH
T ss_pred EHHHHHHHHCcCHHHHHH
Confidence 367888888888888765
No 310
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.69 E-value=6e+02 Score=23.69 Aligned_cols=163 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHH
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR 166 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (263)
.+.+++|.--..++ .+.+.+..-+.+....|... -|+++.|.|....|+-....-..+.+.-.-.-....+..+.|++
T Consensus 119 ~kG~LVIlEST~~P-GTTe~v~~plle~~sgL~~~-~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~ 196 (436)
T COG0677 119 KKGDLVILESTTPP-GTTEEVVKPLLEERSGLKFG-EDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYK 196 (436)
T ss_pred CCCCEEEEecCCCC-CcHHHHHHHHHhhcCCCccc-ceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHH
Confidence 44455544333222 23355544444433335443 69999999987666521111111112111122334444455554
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCC--CCCeeeccccCCCCCc-----HHHHHHHHhCCceEEEccCCCCCCC-------
Q 024751 167 HGLTKSIGVSNFSPKKIETILAFAT--IPPTVNQVEMNPAWQQ-----RKLVEFCKSKSIIVTAFSPLGAVGS------- 232 (263)
Q Consensus 167 ~G~ir~iGvs~~~~~~l~~~~~~~~--~~~~~~q~~~~~~~~~-----~~~i~~~~~~gi~v~a~spl~~~G~------- 232 (263)
.=.-+-+=+++-....+.+++++.- +.++.. +++.+.... .++++.+..|-- +..+.|=-+.|-
T Consensus 197 ~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALa-NElali~~~~GIdvwevIeaAnt~P~-~~~~~PGpGvGGHCIpvDP 274 (436)
T COG0677 197 TIVEGVIPVTSARTAEMVKLTENTFRDVNIALA-NELALICNAMGIDVWEVIEAANTKPR-VNIFYPGPGVGGHCIPVDP 274 (436)
T ss_pred HheEEEEEcCChHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHhCCcHHHHHHHhccCCc-eeecCCCCCCCCcccccCc
Confidence 4333356677777777777777531 211110 122222111 477888877754 555555322121
Q ss_pred ---CCCCCCCCCcHHHHHHHHHhC
Q 024751 233 ---SWGTNQVMNNEALKQIAALQQ 253 (263)
Q Consensus 233 ---l~~~~~~l~~~~l~~ia~~~~ 253 (263)
.|..++.-.+..+.+.|++.|
T Consensus 275 ~fl~~ka~~yg~~~rlI~tAreIN 298 (436)
T COG0677 275 YFLTWKAPEYGLPARLIRTAREIN 298 (436)
T ss_pred hheeecccccCCchHHHHHHHHHh
Confidence 112333334567777777775
No 311
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=21.63 E-value=2.6e+02 Score=22.18 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHhCCceEEEccCCCCCCCCCCCCCCCCcHHHHHHHHHhCC
Q 024751 209 KLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAALQQG 254 (263)
Q Consensus 209 ~~i~~~~~~gi~v~a~spl~~~G~l~~~~~~l~~~~l~~ia~~~~~ 254 (263)
-++-.|.++|+.+.-|+|.--.-..+|.+..-++++..-+.+.++.
T Consensus 88 vi~la~~~~~ipv~ey~P~~VKk~vtG~G~A~K~qV~~mv~~~l~l 133 (164)
T PRK00039 88 VAILAAAQRGLPVAEYTPLQVKKAVVGYGRADKEQVQHMVKRLLNL 133 (164)
T ss_pred HHHHHHHHcCCCEEEECHHHhhhhhcCCCCCCHHHHHHHHHHHhCC
Confidence 4677899999999999998542334566666666655555555543
No 312
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=21.63 E-value=4e+02 Score=24.97 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=43.9
Q ss_pred HHHHHHHHH-HHHcCCccEEEecCCCHHHHHHHHHhCCCCCeeeccccCCCCCc--HHHHHHHHhCCceEEEcc
Q 024751 155 NGVWEAMEE-CQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQ--RKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 155 ~~~~~~l~~-l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~~i~~~~~~gi~v~a~s 225 (263)
.+.+..|.+ |++.|.--.+=...-..+.+.++++..++.-++...++.+...+ ..+.++|+++||.+..+.
T Consensus 50 ~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~ 123 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSFN 123 (475)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 344444443 45555322222123457788999887777655555556666543 568999999999887653
No 313
>PLN02321 2-isopropylmalate synthase
Probab=21.51 E-value=6.2e+02 Score=25.03 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred eceeccccC-CChHHHHHHHHHHHHcCCcEEeCCCCcC--CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHH
Q 024751 31 IGLGSAVDN-IDESAMKSAVLESIKLGYRHFDTASLYG--TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLV 107 (263)
Q Consensus 31 iglG~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg--se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i 107 (263)
+.|++.-.+ .+++...++++.+.+.|...|--++..| ....+++.++...+. + ..++.+.|...+... .
T Consensus 227 v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-~-~~~~~v~i~vH~HND------~ 298 (632)
T PLN02321 227 VEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-T-PGIENVIISTHCQND------L 298 (632)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-c-CCCCCceEEEEeCCC------C
Confidence 455543222 5677777777777888777775555555 445556666554221 1 023345566655322 1
Q ss_pred HHHHHHHHHH--hCCCcccEEEee
Q 024751 108 VPALKKSLKT--LQIEYVDLYLIH 129 (263)
Q Consensus 108 ~~~~~~sL~~--Lg~~~iDl~~lh 129 (263)
-.++-++|.. -|.+++|.-+.-
T Consensus 299 GlAvANslaAv~AGA~~Vd~TinG 322 (632)
T PLN02321 299 GLSTANTLAGAHAGARQVEVTING 322 (632)
T ss_pred CHHHHHHHHHHHhCCCEEEEeccc
Confidence 2233333332 366666665554
No 314
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.30 E-value=5.5e+02 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEeCC
Q 024751 40 IDESAMKSAVLESIKLGYRHFDTA 63 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~~DtA 63 (263)
.-+|.+...++.|++.|+..|++-
T Consensus 38 ~~PENTl~Af~~A~~~Gad~iE~D 61 (300)
T cd08612 38 ENLENTMEAFEHAVKVGTDMLELD 61 (300)
T ss_pred CCCccHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999988643
No 315
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.27 E-value=1.4e+02 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHH-----HHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEc
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPK-----KIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~-----~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~ 224 (263)
+.....-|++|++.| +-||.||+.- ++.+.++....- +..+-+++..|+++|+..++|
T Consensus 94 ~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe~Gmg----------y~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 94 FRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEETGMG----------YDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp T--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHHTT------------HHHHHHHHHHHHHTT-EE--E
T ss_pred CCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHhcCCC----------HHHHHHHHHHHHHCCCeeeee
Confidence 345566788888887 6799999732 345555544421 112345677777776665554
No 316
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=21.18 E-value=76 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.1
Q ss_pred cccCeeceeccccCCChHHHHHHHHHHHH
Q 024751 26 RKMPVIGLGSAVDNIDESAMKSAVLESIK 54 (263)
Q Consensus 26 ~~v~~iglG~~~~~~~~~~~~~~l~~A~~ 54 (263)
+.+|+||.|... .+.+++.++++..+.
T Consensus 112 va~P~iG~G~~G--~~w~~v~~ii~~~~~ 138 (140)
T cd02901 112 VAMPRIGCGLGG--LDWEEVEPLIEKALA 138 (140)
T ss_pred EeeCCCCCcCCC--CCHHHHHHHHHHHhc
Confidence 889999998877 568888888888764
No 317
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.10 E-value=3.1e+02 Score=21.32 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHH--cCCccEEEecCCC
Q 024751 102 AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQR--HGLTKSIGVSNFS 179 (263)
Q Consensus 102 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~ 179 (263)
.+.+.+.+.+++--+.+|++ +++++-.. -.+..+.+++..+ +|.|-.=|--+|.
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~-v~~~QSN~-----------------------Egelid~I~~a~~~~dgiIINpga~THt 79 (140)
T cd00466 24 TTLADIEALLRELAAELGVE-VEFFQSNH-----------------------EGELIDWIHEARDGADGIIINPGAYTHT 79 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc-----------------------HHHHHHHHHHhhccCcEEEEcchHHHHH
Confidence 45688888888888888863 56655432 4677788887754 3444444555666
Q ss_pred HHHHHHHHHhCCCCCeeeccccCCCCCc
Q 024751 180 PKKIETILAFATIPPTVNQVEMNPAWQQ 207 (263)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~ 207 (263)
.-.+..++....++ ++.++++..+.+
T Consensus 80 SvAi~DAl~~~~~P--~VEVHiSNi~aR 105 (140)
T cd00466 80 SIALRDALAAVSIP--VIEVHISNIHAR 105 (140)
T ss_pred HHHHHHHHHcCCCC--EEEEecCCcccc
Confidence 66677777766655 777788766554
No 318
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=21.06 E-value=4.9e+02 Score=21.66 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCC-CeeeccccCCC------------CCc--HHHHHHHHhCCc
Q 024751 155 NGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIP-PTVNQVEMNPA------------WQQ--RKLVEFCKSKSI 219 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~-~~~~q~~~~~~------------~~~--~~~i~~~~~~gi 219 (263)
.+..+++.+|+++|.. .+=.|+-+...+..+++...++ +.+....--.+ ... .+++++|+++++
T Consensus 19 ~~~~~~i~~l~~~G~~-~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~i~~~~~~~i~~~~~~~~~ 97 (256)
T TIGR00099 19 PSTKEALAKLREKGIK-VVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKKPLDLDLVEEILNFLKKHGL 97 (256)
T ss_pred HHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeecCCCHHHHHHHHHHHHHcCc
Confidence 5678999999999863 3334555566777777665544 33322111111 111 468999999998
Q ss_pred eEEEccC
Q 024751 220 IVTAFSP 226 (263)
Q Consensus 220 ~v~a~sp 226 (263)
.+..+..
T Consensus 98 ~~~~~~~ 104 (256)
T TIGR00099 98 DVILYGD 104 (256)
T ss_pred EEEEEeC
Confidence 7765543
No 319
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=20.82 E-value=2.7e+02 Score=24.05 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=9.3
Q ss_pred HHHHHHHhCCceEEE
Q 024751 209 KLVEFCKSKSIIVTA 223 (263)
Q Consensus 209 ~~i~~~~~~gi~v~a 223 (263)
.+.++|+++||.++-
T Consensus 68 ~l~~~~~~~~i~~~D 82 (255)
T PF03618_consen 68 YLEEFCREHGIPCVD 82 (255)
T ss_pred HHHHHHHhcCCCEEe
Confidence 355577777766654
No 320
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.79 E-value=3.1e+02 Score=20.55 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEEEe
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGV 175 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 175 (263)
+..+.+.|+.+....+|.+++...+...+. ..+....++.|.+.| |+-+-+
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~----------------~~~~~~~~~~l~~~g-i~l~~~ 101 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRS----------------LRDLLALLELLEKKG-VRLVSV 101 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCc----------------HHHHHHHHHHHHHCC-CEEEEC
Confidence 345556666565556788888877554432 556666777777776 455443
No 321
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=20.75 E-value=4.2e+02 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFAT 191 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 191 (263)
.....+.+..+.+.|+=--+|.+.++.++.+++.+.+.
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~ 115 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAE 115 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 45566677777777776666777777777666665543
No 322
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.72 E-value=5.5e+02 Score=22.11 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCCCH------HHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHHhCCceEEEcc
Q 024751 152 LDYNGVWEAMEECQRHGLTKSIGVSNFSP------KKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFS 225 (263)
Q Consensus 152 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~------~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~~~gi~v~a~s 225 (263)
......++.+++++++-.+--+=.+-+|+ +.+-+.+..++++-.+ ++--|+....++++.|+++|+..+..-
T Consensus 74 ~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgvi--ipDLP~ee~~~~~~~~~~~gi~~I~lv 151 (263)
T CHL00200 74 INLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLI--IPDLPYEESDYLISVCNLYNIELILLI 151 (263)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEE--ecCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45667888888888654454454444442 2222333334444222 233344445678999999998776544
Q ss_pred CC
Q 024751 226 PL 227 (263)
Q Consensus 226 pl 227 (263)
+-
T Consensus 152 ~P 153 (263)
T CHL00200 152 AP 153 (263)
T ss_pred CC
Confidence 43
No 323
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.71 E-value=5.9e+02 Score=22.48 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHc-CCcEEeCCCCcC---CHHHHHHHHHHHHhcCCCCCCccEEEeeCCCCCCCChhHHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKL-GYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSL 115 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg---se~~lG~al~~~~~~~~~~~R~~~~I~tK~~~~~~~~~~i~~~~~~sL 115 (263)
.+.++..++++...+. ||+-+--+..=. +...+.+.++...+.+ ..+.+.+.|+...... ..+...+-+.|
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~---~v~~iri~Tr~~v~~p--~rit~ell~~L 193 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID---HVKIVRFHTRVPVADP--ARVTPALIAAL 193 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC---CccEEEEeCCCcccCh--hhcCHHHHHHH
Q ss_pred HHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCccEE------EecCCCHHHHHHHHHh
Q 024751 116 KTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSI------GVSNFSPKKIETILAF 189 (263)
Q Consensus 116 ~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i------Gvs~~~~~~l~~~~~~ 189 (263)
...|.. ..+.+|....... ..+++++++.|++.|..-.+ |+ |.+.+.+.++.+.
T Consensus 194 ~~~g~~--v~i~l~~~h~~el-----------------~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~ 253 (321)
T TIGR03822 194 KTSGKT--VYVALHANHAREL-----------------TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRA 253 (321)
T ss_pred HHcCCc--EEEEecCCChhhc-----------------CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHH
No 324
>PRK00077 eno enolase; Provisional
Probab=20.64 E-value=6.8e+02 Score=23.17 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=59.0
Q ss_pred ChhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcC--CccEEEec--CC
Q 024751 103 HRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHG--LTKSIGVS--NF 178 (263)
Q Consensus 103 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~ 178 (263)
+++...+.+.+.++. .++.++-.|.. .+-|+.+.+|.+.- ++.-+|=- ..
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~---------------------~~D~~g~~~L~~~~~~~ipI~gdE~~~t 315 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLD---------------------ENDWEGWKLLTEKLGDKVQLVGDDLFVT 315 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCC---------------------CccHHHHHHHHHhcCCCCeEEcCCCccC
Confidence 344444444444444 46778887732 22356667776653 45443322 24
Q ss_pred CHHHHHHHHHhCCCCCeeeccccCCCC---CcHHHHHHHHhCCceEEE-ccCC
Q 024751 179 SPKKIETILAFATIPPTVNQVEMNPAW---QQRKLVEFCKSKSIIVTA-FSPL 227 (263)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~~i~~~~~~gi~v~a-~spl 227 (263)
+.+.+.++++....+ ++|+..+-.- .-.+++..|+.+|+.++. ++..
T Consensus 316 ~~~~~~~~i~~~a~d--~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sg 366 (425)
T PRK00077 316 NTKRLKKGIEKGAAN--SILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSG 366 (425)
T ss_pred CHHHHHHHHHhCCCC--EEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 688999998876655 6666665432 236799999999997654 4443
No 325
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=20.48 E-value=1.6e+02 Score=25.95 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCCc
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLT 170 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 170 (263)
.+...+.+++.+++||++ +|.+.-..- ......+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt~-------------------~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTTS-------------------PRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCCC-------------------HHHHHHHHHHHHHHHHCCCE
Confidence 366778889999999986 575432210 01145678899999999998
No 326
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=20.41 E-value=5.1e+02 Score=21.60 Aligned_cols=42 Identities=10% Similarity=-0.105 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCCeeeccccCCCCC--cHHHHHHHHhCCceEEEc
Q 024751 183 IETILAFATIPPTVNQVEMNPAWQ--QRKLVEFCKSKSIIVTAF 224 (263)
Q Consensus 183 l~~~~~~~~~~~~~~q~~~~~~~~--~~~~i~~~~~~gi~v~a~ 224 (263)
+..+-...+..+++.--+||.+++ +.++.+..++.|+.|+..
T Consensus 175 l~~~~~~~~~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 175 LAELEANGKPAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred HHHHHhcCCceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 333333344566677777888776 368999999999999864
No 327
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=20.36 E-value=4.7e+02 Score=21.19 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCccEEEec-CCCHHHHHHHHHhCCCCCeeeccccCCCCCcHHHHHHHH
Q 024751 159 EAMEECQRHGLTKSIGVS-NFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCK 215 (263)
Q Consensus 159 ~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~~i~~~~ 215 (263)
+...++.+.-.-+.+||. |-+.+.+.++++... +.++|++-+. ..+.....+
T Consensus 38 ~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~--ld~vQLHG~e---~~e~~~~l~ 90 (197)
T PF00697_consen 38 DQARELVSAVPPKIVGVFVNQSPEEILEIVEELG--LDVVQLHGDE---SPEYIKLLR 90 (197)
T ss_dssp HHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCT--ESEEEE-SGG----HHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcC--CCEEEECCCC---CHHHHHHhh
Confidence 445555555555589987 456777888888765 4488877543 334444444
No 328
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=20.36 E-value=4e+02 Score=20.31 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCccEEEeeCCCCCCCChhHHHHHHHHHHHHhCC----CcccEEEeecCCC
Q 024751 87 SREELFITTKLWCSDAHRDLVVPALKKSLKTLQI----EYVDLYLIHWPMS 133 (263)
Q Consensus 87 ~R~~~~I~tK~~~~~~~~~~i~~~~~~sL~~Lg~----~~iDl~~lh~p~~ 133 (263)
.|=-+.|+-|++ ....+..+++.+.++++.+.. ...|++++-.+..
T Consensus 47 ~RvG~~VSKKvG-~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~ 96 (129)
T PRK01313 47 PRVGFTVTKKNG-NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDA 96 (129)
T ss_pred cEEEEEEecccC-cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECccc
Confidence 455677777765 355678899999999887643 5589999998843
No 329
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.35 E-value=2.3e+02 Score=25.98 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhCC---CCCeeeccccCCCCCc-------HHHHHHHHhCCceEEEccCC
Q 024751 177 NFSPKKIETILAFAT---IPPTVNQVEMNPAWQQ-------RKLVEFCKSKSIIVTAFSPL 227 (263)
Q Consensus 177 ~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-------~~~i~~~~~~gi~v~a~spl 227 (263)
|++.+.++++++..+ ++.++.-+-.|...-| +++.++|+++||.++--+.-
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 566777777777543 4444444444443322 57889999999998865543
No 330
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.32 E-value=5.4e+02 Score=26.33 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHc--CCccEEEecCCCHH
Q 024751 104 RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRH--GLTKSIGVSNFSPK 181 (263)
Q Consensus 104 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~ 181 (263)
.+.+++-.+.....--....-+|+|+..+.. -.+.+++|.+..++ ..+.+|-+++....
T Consensus 102 Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------------t~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 102 VDDARELRERAFFAPAESRYKIFIIDEAHMV-------------------TPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEechhhc-------------------CHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 4566654444332222245578888865321 25678888888887 89999999866544
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCc---HHHHHHHHhCCceE
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQ---RKLVEFCKSKSIIV 221 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~---~~~i~~~~~~gi~v 221 (263)
.+..+.+.+ ..++|...... .-+...|++.|+.+
T Consensus 163 Ll~TIrSRc------~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 163 VIGTIRSRT------HHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred hhHHHHhhe------eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 344444433 23344444332 23556677777653
No 331
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.27 E-value=7.2e+02 Score=23.77 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC----------ccEEEecC
Q 024751 108 VPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL----------TKSIGVSN 177 (263)
Q Consensus 108 ~~~~~~sL~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----------ir~iGvs~ 177 (263)
+..+-+.|.++|+++|.+-+.-.. .+.+++++.+.+.++ .+-.+++.
T Consensus 108 Ki~Ia~~L~~~GVd~IEvG~Pa~s-----------------------~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R 164 (503)
T PLN03228 108 KLEIARQLAKLRVDIMEVGFPGSS-----------------------EEEFEAVKTIAKTVGNEVDEETGYVPVICGIAR 164 (503)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-----------------------HHHHHHHHHHHHhcccccccccccceEEeeecc
Q ss_pred CCHHHHHHHHHhC---CCCCeeeccccCCCCCc--------------HHHHHHHHhCCceEEEccC
Q 024751 178 FSPKKIETILAFA---TIPPTVNQVEMNPAWQQ--------------RKLVEFCKSKSIIVTAFSP 226 (263)
Q Consensus 178 ~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~--------------~~~i~~~~~~gi~v~a~sp 226 (263)
...+.++.+++.. +.+-+..-+..+..+.+ .+.+++++++|...+.+++
T Consensus 165 ~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 165 CKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred cCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
No 332
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.20 E-value=55 Score=30.11 Aligned_cols=78 Identities=23% Similarity=0.150 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHcCCc-EEeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEee---------CCC-CCCCChhHHH
Q 024751 40 IDESAMKSAVLESIKLGYR-HFDTASLYGTERALGEAIAEALKLGLVASREELFITT---------KLW-CSDAHRDLVV 108 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~-~~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~t---------K~~-~~~~~~~~i~ 108 (263)
.+.++=.+-+..|.+.|-. ..|-+. -|.-..+-+.+-+ ...+=|-| |-+ ..+.+.+.+.
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLSt-ggdl~~iR~~il~---------~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~ 142 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLST-GGDLDEIRRAILE---------NSPVPVGTVPIYQAAIRKGGSIVDMTEDDFF 142 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE----STTHHHHHHHHHH---------T-SS-EEE-HHHHHHHHTTT-GGG--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCC-CCCHHHHHHHHHH---------hCCCccccchHHHHHHHhCCChhhCCHHHHH
Confidence 4555556778999999975 556553 2333333333321 12222222 111 2356778888
Q ss_pred HHHHHHHHHhCCCcccEEEeecC
Q 024751 109 PALKKSLKTLQIEYVDLYLIHWP 131 (263)
Q Consensus 109 ~~~~~sL~~Lg~~~iDl~~lh~p 131 (263)
+.+++..+. -+|.+.+|..
T Consensus 143 ~~ie~qa~~----GVDfmtiH~g 161 (420)
T PF01964_consen 143 DVIEKQAKD----GVDFMTIHCG 161 (420)
T ss_dssp HHHHHHHHH----T--EEEE-TT
T ss_pred HHHHHHHHc----CCCEEEEccc
Confidence 777776653 4899999975
No 333
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=20.17 E-value=6.6e+02 Score=22.82 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHcCCcE---EeCCCCcCCHHHHHHHHHHHHhcCCCCCCccEEEeeCC--CCCCCChhHHHHHHHHH
Q 024751 40 IDESAMKSAVLESIKLGYRH---FDTASLYGTERALGEAIAEALKLGLVASREELFITTKL--WCSDAHRDLVVPALKKS 114 (263)
Q Consensus 40 ~~~~~~~~~l~~A~~~Gi~~---~DtA~~Ygse~~lG~al~~~~~~~~~~~R~~~~I~tK~--~~~~~~~~~i~~~~~~s 114 (263)
.+..++..+++...+.|.+. +-..+.||.. . -+.+++.. .+..+.|+... .....+...........
T Consensus 155 ~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~-~-~~~f~~~~------~~~GicIa~~e~~~~~~~~~~~~~~~~~~~ 226 (403)
T cd06361 155 SDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRS-A-LETFIIQA------EANGVCIAFKEILPASLSDNTKLNRIIRTT 226 (403)
T ss_pred chHhHHHHHHHHHHHcCCcEEEEEEecCchHHH-H-HHHHHHHH------HHCCeEEEEEEEecCccCcchhHHHHHHHH
Confidence 45566777777777778764 4445677621 1 22222221 23335555433 22111111122233333
Q ss_pred HHHhCCCcccEEEeecCCCCCCCccccCCCCccccccCCHHHHHHHHHHHHHcCC-ccEEEecCCC
Q 024751 115 LKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGL-TKSIGVSNFS 179 (263)
Q Consensus 115 L~~Lg~~~iDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~ 179 (263)
++.+.....|++++... ..++..-+.++++.|. ...||-..|.
T Consensus 227 ~~~ik~~~a~vVvv~~~----------------------~~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 227 EKIIEENKVNVIVVFAR----------------------QFHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHhcCCCeEEEEEeC----------------------hHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 44455566899998765 3455556667776666 2245555553
No 334
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.17 E-value=2.7e+02 Score=22.28 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCC
Q 024751 154 YNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIP 193 (263)
Q Consensus 154 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 193 (263)
..++-+.|++|++.|..-++.-.++.++...++++...++
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 5667888999999887544444456788889999987766
No 335
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.10 E-value=3.4e+02 Score=21.14 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCeeeccccCCCCCc----HHHHHHHHhCCceEE
Q 024751 182 KIETILAFATIPPTVNQVEMNPAWQQ----RKLVEFCKSKSIIVT 222 (263)
Q Consensus 182 ~l~~~~~~~~~~~~~~q~~~~~~~~~----~~~i~~~~~~gi~v~ 222 (263)
++++.++..++..+-+++.+++.|.. .+-.+..+++||+-=
T Consensus 47 ~I~~aL~~~Gv~~V~V~i~~~p~Wt~d~it~~gr~~l~~~giapp 91 (146)
T TIGR02159 47 DIRDAVRALGVEVVEVSTSLDPPWTTDWITEDAREKLREYGIAPP 91 (146)
T ss_pred HHHHHHHhcCCCeEEEeEeeCCCCChHHCCHHHHHHHHhcCccCC
Confidence 34555554456666778888887754 466777888888753
No 336
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=20.06 E-value=6.8e+02 Score=22.88 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHcCCc---cEEEecCCC
Q 024751 155 NGVWEAMEECQRHGLT---KSIGVSNFS 179 (263)
Q Consensus 155 ~~~~~~l~~l~~~G~i---r~iGvs~~~ 179 (263)
.++...|.++++.|.. ..||...|.
T Consensus 241 ~~~~~~~~~a~~~g~~~~~~~i~~~~~~ 268 (452)
T cd06362 241 DDIRGLLAAAKRLNAEGHFQWIASDGWG 268 (452)
T ss_pred HHHHHHHHHHHHcCCcCceEEEEecccc
Confidence 4566677788887774 445665554
Done!