Query 024753
Match_columns 263
No_of_seqs 303 out of 1600
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 2.9E-30 6.2E-35 242.9 18.1 166 77-249 5-173 (557)
2 KOG4441 Proteins containing BT 100.0 1.4E-29 3.1E-34 237.9 17.0 173 76-254 15-189 (571)
3 PHA02790 Kelch-like protein; P 100.0 7.9E-29 1.7E-33 229.8 15.0 170 86-261 11-194 (480)
4 PHA03098 kelch-like protein; P 100.0 8.6E-28 1.9E-32 226.0 14.4 146 94-249 6-155 (534)
5 KOG4350 Uncharacterized conser 99.9 6.7E-26 1.5E-30 196.2 11.0 163 82-248 29-194 (620)
6 KOG4591 Uncharacterized conser 99.9 1E-20 2.3E-25 150.0 13.1 164 81-253 50-218 (280)
7 PF00651 BTB: BTB/POZ domain; 99.8 1E-20 2.2E-25 141.3 10.0 107 88-195 1-110 (111)
8 KOG2075 Topoisomerase TOP1-int 99.8 2E-19 4.4E-24 159.2 14.8 153 78-232 95-255 (521)
9 KOG4682 Uncharacterized conser 99.8 3.2E-18 6.9E-23 148.5 13.1 158 88-253 60-223 (488)
10 smart00225 BTB Broad-Complex, 99.7 3.1E-17 6.6E-22 116.7 9.7 90 99-189 1-90 (90)
11 KOG0783 Uncharacterized conser 99.7 1.7E-16 3.7E-21 148.0 8.9 140 95-234 708-854 (1267)
12 KOG0783 Uncharacterized conser 98.8 4.9E-09 1.1E-13 99.0 5.6 79 81-159 538-632 (1267)
13 KOG0511 Ankyrin repeat protein 98.6 2.9E-07 6.2E-12 80.4 10.2 135 107-244 301-446 (516)
14 KOG2838 Uncharacterized conser 98.5 2E-07 4.3E-12 78.2 6.4 123 81-203 219-395 (401)
15 KOG2838 Uncharacterized conser 98.3 1.5E-06 3.2E-11 73.1 7.2 105 79-183 112-220 (401)
16 KOG2716 Polymerase delta-inter 98.2 1.9E-05 4.1E-10 65.7 10.0 95 100-195 7-104 (230)
17 KOG1987 Speckle-type POZ prote 98.1 4.2E-06 9.2E-11 73.1 5.8 119 106-225 109-230 (297)
18 PF02214 BTB_2: BTB/POZ domain 97.9 2.4E-05 5.2E-10 56.4 5.5 88 100-188 1-94 (94)
19 smart00512 Skp1 Found in Skp1 97.2 0.0028 6.1E-08 46.5 7.8 81 100-181 4-104 (104)
20 PF07707 BACK: BTB And C-termi 97.1 0.00087 1.9E-08 48.7 4.8 46 201-250 1-47 (103)
21 KOG3473 RNA polymerase II tran 97.0 0.0041 9E-08 44.2 7.2 81 100-181 19-112 (112)
22 PF03931 Skp1_POZ: Skp1 family 96.8 0.007 1.5E-07 40.0 6.7 55 100-157 3-58 (62)
23 KOG0511 Ankyrin repeat protein 96.7 0.0017 3.7E-08 57.3 3.5 96 86-186 135-236 (516)
24 PF11822 DUF3342: Domain of un 96.6 0.011 2.3E-07 51.6 7.8 112 107-219 14-137 (317)
25 KOG1724 SCF ubiquitin ligase, 96.5 0.033 7.2E-07 44.1 9.9 98 105-203 13-134 (162)
26 smart00875 BACK BTB And C-term 96.0 0.0081 1.7E-07 43.0 3.7 45 201-249 1-46 (101)
27 KOG1778 CREB binding protein/P 96.0 0.0058 1.2E-07 53.7 3.3 133 100-232 29-163 (319)
28 KOG2714 SETA binding protein S 95.8 0.046 1E-06 49.3 7.9 86 100-186 13-102 (465)
29 KOG1665 AFH1-interacting prote 95.7 0.031 6.8E-07 46.2 6.1 90 100-190 11-105 (302)
30 PF01466 Skp1: Skp1 family, di 92.1 0.4 8.7E-06 33.1 4.9 44 166-209 13-59 (78)
31 KOG2715 Uncharacterized conser 91.9 1.2 2.6E-05 35.3 7.7 96 99-195 22-121 (210)
32 COG5201 SKP1 SCF ubiquitin lig 90.6 2.5 5.4E-05 32.0 8.0 97 100-199 4-125 (158)
33 KOG3840 Uncharaterized conserv 79.7 5.4 0.00012 34.8 5.8 88 95-182 93-185 (438)
34 PF11822 DUF3342: Domain of un 75.6 1.5 3.2E-05 38.6 1.3 54 195-252 71-125 (317)
35 KOG2075 Topoisomerase TOP1-int 74.1 8.2 0.00018 35.8 5.7 30 196-225 185-214 (521)
36 PF07707 BACK: BTB And C-termi 72.1 15 0.00032 25.9 5.8 59 170-228 2-75 (103)
37 KOG2723 Uncharacterized conser 71.9 10 0.00022 31.7 5.4 93 97-190 7-104 (221)
38 PF00651 BTB: BTB/POZ domain; 67.6 9.4 0.0002 27.3 4.0 28 198-225 81-108 (111)
39 PHA03098 kelch-like protein; P 54.4 19 0.00042 34.0 4.5 31 195-225 72-102 (534)
40 PHA02790 Kelch-like protein; P 46.7 36 0.00077 31.9 5.0 45 148-196 108-152 (480)
41 PHA02713 hypothetical protein; 39.6 44 0.00095 32.0 4.4 31 195-225 90-120 (557)
42 smart00875 BACK BTB And C-term 38.5 43 0.00094 23.1 3.3 26 170-195 2-27 (101)
43 PF09593 Pathogen_betaC1: Beta 34.8 40 0.00087 25.2 2.6 73 105-182 20-96 (117)
44 PF02519 Auxin_inducible: Auxi 28.4 2.3E+02 0.005 20.4 5.7 54 100-156 41-99 (100)
45 KOG3713 Voltage-gated K+ chann 26.1 5.6E+02 0.012 24.2 8.9 95 99-195 32-140 (477)
46 KOG4682 Uncharacterized conser 25.9 66 0.0014 29.5 2.9 30 166-195 172-201 (488)
47 cd03774 MATH_SPOP Speckle-type 23.0 35 0.00076 25.8 0.6 29 18-46 103-138 (139)
48 PF06887 DUF1265: Protein of u 21.0 1.1E+02 0.0025 18.7 2.4 34 198-231 10-45 (48)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=242.93 Aligned_cols=166 Identities=19% Similarity=0.330 Sum_probs=153.2
Q ss_pred ccCChHHHHHHHHHHhhCCCcccEEEEec-CeEEehhHHHHhhcChhHHhhhcCCCCcCC-cceEEeCCCCHHHHHHHHH
Q 024753 77 QKRSNATALASLGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHDLKEKE-LSTIDIPDMSIDACQAFLS 154 (263)
Q Consensus 77 ~~~~~~~l~~~l~~l~~~~~~~Dv~~~v~-~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~lL~ 154 (263)
.+.|...+++.|++|++++.+|||++.++ |++|+|||.|||++|+||++||.++++|.. +++|.|.++++++|+.+|+
T Consensus 5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~ 84 (557)
T PHA02713 5 DIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQ 84 (557)
T ss_pred hhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHH
Confidence 35677889999999999999999999997 899999999999999999999999999864 7899999999999999999
Q ss_pred hhcCCCCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhcc
Q 024753 155 YIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDI 233 (263)
Q Consensus 155 fiYt~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~ 233 (263)
|+||+. .+ .++++++|.+|++|+++.|++.|+++|.++++++||+.++.+|..+.+..|.+.|.+|+. ||.++.+
T Consensus 85 y~Yt~~-i~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~- 160 (557)
T PHA02713 85 YLYNRH-IS--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT- 160 (557)
T ss_pred HhcCCC-CC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC-
Confidence 999985 33 489999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred ccchHHHHhhCcHHHH
Q 024753 234 RDDFSVFLQCADRELI 249 (263)
Q Consensus 234 ~~~~~~fl~~~~~~l~ 249 (263)
.++|++++..+|.
T Consensus 161 ---~~ef~~L~~~~l~ 173 (557)
T PHA02713 161 ---TDAFKKTVFEILF 173 (557)
T ss_pred ---ChhhhhCCHHHHH
Confidence 8889887755554
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=237.91 Aligned_cols=173 Identities=28% Similarity=0.396 Sum_probs=161.9
Q ss_pred cccCChHHHHHHHHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHh
Q 024753 76 TQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSY 155 (263)
Q Consensus 76 ~~~~~~~~l~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~f 155 (263)
....|...+++.|+.+++.+.+|||++.+++++|+|||.||||.||||++||.++++|+.+.+|.+.++++++++.+++|
T Consensus 15 ~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y 94 (571)
T KOG4441|consen 15 TDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDY 94 (571)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhcc
Q 024753 156 IYGN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDI 233 (263)
Q Consensus 156 iYt~-~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~ 233 (263)
+||+ +.... +++++|+.+|+.||++.+.+.|.++|.++++++||+.+..+|+.|++.+|.+.+..|+. ||.++..
T Consensus 95 ~Yt~~i~i~~--~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~- 171 (571)
T KOG4441|consen 95 AYTGKLEISE--DNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSK- 171 (571)
T ss_pred hhcceEEech--HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc-
Confidence 9998 44444 89999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred ccchHHHHhhCcHHHHHHHHH
Q 024753 234 RDDFSVFLQCADRELIAEVFH 254 (263)
Q Consensus 234 ~~~~~~fl~~~~~~l~~~l~~ 254 (263)
.++|+.++..++...|..
T Consensus 172 ---~eefl~L~~~~l~~ll~~ 189 (571)
T KOG4441|consen 172 ---TEEFLLLSLEELIGLLSS 189 (571)
T ss_pred ---cHHhhCCCHHHHHhhccc
Confidence 899999887777754333
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=7.9e-29 Score=229.78 Aligned_cols=170 Identities=16% Similarity=0.218 Sum_probs=146.6
Q ss_pred HHHHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEe--CCCCHHHHHHHHHhhcCC-CCc
Q 024753 86 ASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI--PDMSIDACQAFLSYIYGN-IEH 162 (263)
Q Consensus 86 ~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~lL~fiYt~-~~~ 162 (263)
.++-.+..++.+|||++.+| ++|+|||.|||+.||||++||.++++|+.+ +|.+ .++++++++.+|+|+||| +..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 45667888899999998655 699999999999999999999999999864 5555 389999999999999998 445
Q ss_pred cccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHH
Q 024753 163 EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFL 241 (263)
Q Consensus 163 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl 241 (263)
+. +++++++.+|++||++.+++.|+++|.++|+++||+.++.+|+.|++.+|.+.|.+|+. ||.++.+ .+.++|+
T Consensus 89 t~--~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~--~~~~ef~ 164 (480)
T PHA02790 89 DS--HNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELED--DIIDNFD 164 (480)
T ss_pred ec--ccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhc--ccchhhh
Confidence 44 89999999999999999999999999999999999999999999999999999999999 9999986 1136788
Q ss_pred hhCcHHHHH----------HHHHHHHhccc
Q 024753 242 QCADRELIA----------EVFHEVLGAWK 261 (263)
Q Consensus 242 ~~~~~~l~~----------~l~~~~l~~~k 261 (263)
.++..+++. ++++.+++|.+
T Consensus 165 ~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~ 194 (480)
T PHA02790 165 YLSMKLILESDELNVPDEDYVVDFVIKWYM 194 (480)
T ss_pred hCCHHHhcccccCCCccHHHHHHHHHHHHH
Confidence 766544442 48888888643
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=8.6e-28 Score=226.02 Aligned_cols=146 Identities=23% Similarity=0.346 Sum_probs=135.0
Q ss_pred CCCcccEEEEe--cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCCC-CccccHHHHH
Q 024753 94 EGIHTDIIINA--SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNI-EHEEFLTHRL 170 (263)
Q Consensus 94 ~~~~~Dv~~~v--~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~-~~~~~~~~~~ 170 (263)
++.+|||+|.+ +|++|+|||.||+++|+||++||.++++ +.+|.+++ ++++|+.+|+|+|||. ..+ .+++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~--~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINIT--SNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEc--HHHHH
Confidence 88899999998 9999999999999999999999999887 57899999 9999999999999984 333 37899
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHHhhCcHHHH
Q 024753 171 ALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELI 249 (263)
Q Consensus 171 ~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl~~~~~~l~ 249 (263)
+|+.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|.+.|.+||. ||.++.+ .++|++++...+.
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~----~~~f~~l~~~~l~ 155 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYN----DPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc----CchhhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9999987 7788888755544
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=6.7e-26 Score=196.21 Aligned_cols=163 Identities=26% Similarity=0.392 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCC-C
Q 024753 82 ATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGN-I 160 (263)
Q Consensus 82 ~~l~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~-~ 160 (263)
..+.+++..++-+++++||+|++++++|+|||.|||+||.|||+|+.++|+|+.+..|.+++-..++|+.+|+||||| +
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999999987 2
Q ss_pred C-ccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchH
Q 024753 161 E-HEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFS 238 (263)
Q Consensus 161 ~-~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~ 238 (263)
. .....+.+.+.|.+|++|+..+|.....+++++.+..+|++.++..|..|++.+|...|+.|+- |-.++.. -+
T Consensus 109 ~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~----~~ 184 (620)
T KOG4350|consen 109 DLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLE----DP 184 (620)
T ss_pred ecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhc----Cc
Confidence 2 2233477899999999999999999999999999999999999999999999999999999999 8888887 66
Q ss_pred HHHhhCcHHH
Q 024753 239 VFLQCADREL 248 (263)
Q Consensus 239 ~fl~~~~~~l 248 (263)
.|..++...|
T Consensus 185 sFn~LSk~sL 194 (620)
T KOG4350|consen 185 SFNRLSKDSL 194 (620)
T ss_pred chhhhhHHHH
Confidence 7777664443
No 6
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.85 E-value=1e-20 Score=149.99 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHhhCCCcccEEEEecC---eEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhc
Q 024753 81 NATALASLGRMLTEGIHTDIIINASN---GSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY 157 (263)
Q Consensus 81 ~~~l~~~l~~l~~~~~~~Dv~~~v~~---~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiY 157 (263)
++.++.-...+++.+.++|++|.++| +.++|||.|||+||.+++ |.++ ...++.+..++|.++++|...++|||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~-~dekse~~~~dDad~Ea~~t~iRWIY 126 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANG-GDEKSEELDLDDADFEAFHTAIRWIY 126 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccC-CCcchhhhcccccCHHHHHHhheeee
Confidence 34556667889999999999999984 599999999999999887 3332 23345677888999999999999999
Q ss_pred CC-CCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhcccc
Q 024753 158 GN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRD 235 (263)
Q Consensus 158 t~-~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~ 235 (263)
|+ +....+...+.++.++|++|+++.|++.|++-+...+.++||+.+|++|++.+...|...|...|+ +|+++-.
T Consensus 127 TDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~--- 203 (280)
T KOG4591|consen 127 TDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK--- 203 (280)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh---
Confidence 98 444444588999999999999999999999999999999999999999999999999999999999 9988853
Q ss_pred chHHHHhhCcHHHHHHHH
Q 024753 236 DFSVFLQCADRELIAEVF 253 (263)
Q Consensus 236 ~~~~fl~~~~~~l~~~l~ 253 (263)
..|-+ ..+.|+-.++
T Consensus 204 --a~Faq-Ms~aLLYklI 218 (280)
T KOG4591|consen 204 --ADFAQ-MSAALLYKLI 218 (280)
T ss_pred --HHHHh-ccHHHHHHHH
Confidence 33443 3455554443
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.84 E-value=1e-20 Score=141.34 Aligned_cols=107 Identities=36% Similarity=0.575 Sum_probs=93.0
Q ss_pred HHHHhhCCCcccEEEEec-CeEEehhHHHHhhcChhHHhhhcCC-CCcCCcceEEeCCCCHHHHHHHHHhhcCC-CCccc
Q 024753 88 LGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHD-LKEKELSTIDIPDMSIDACQAFLSYIYGN-IEHEE 164 (263)
Q Consensus 88 l~~l~~~~~~~Dv~~~v~-~~~~~aHr~iLaa~S~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~lL~fiYt~-~~~~~ 164 (263)
|+++++++.++|++|.++ |++|+|||.||+++|+||+++|.++ +.+....+|.++++++++|+.+++|+|++ ....
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~- 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN- 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-
Confidence 578999999999999999 7999999999999999999999987 56666678999999999999999999987 3333
Q ss_pred cHHHHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 024753 165 FLTHRLALLRAADKYDICDLKEACHDSLVED 195 (263)
Q Consensus 165 ~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 195 (263)
..+++.+++.+|++|+++.|+..|+++|.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 2488999999999999999999999999864
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=2e-19 Score=159.17 Aligned_cols=153 Identities=25% Similarity=0.391 Sum_probs=138.7
Q ss_pred cCChHHHHHHHHHHhhCCCcccEEEEecC-----eEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHH
Q 024753 78 KRSNATALASLGRMLTEGIHTDIIINASN-----GSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAF 152 (263)
Q Consensus 78 ~~~~~~l~~~l~~l~~~~~~~Dv~~~v~~-----~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~l 152 (263)
.....++.+....+++++..+|+.|+|++ ++++|||.|||..|.+|.+||.+++.+....+|.++|++|.+|..+
T Consensus 95 q~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~ 174 (521)
T KOG2075|consen 95 QAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAF 174 (521)
T ss_pred ccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHH
Confidence 34556788899999999999999999973 4999999999999999999999999999889999999999999999
Q ss_pred HHhhcCC-CCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHH-HHhCCChHHHHHHHHHHH-HHHh
Q 024753 153 LSYIYGN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQN-AYLYQLPKLKSSCMRYLV-KFGK 229 (263)
Q Consensus 153 L~fiYt~-~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~-A~~~~~~~L~~~~~~~i~-~~~~ 229 (263)
|+|+|++ +... .++++.++.+|++|.++.|.+.|.++|...+...|.+..+.- |..++-++|...|++-|. ++..
T Consensus 175 L~flYsdev~~~--~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~ 252 (521)
T KOG2075|consen 175 LRFLYSDEVKLA--ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFED 252 (521)
T ss_pred HHHHhcchhhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHh
Confidence 9999998 3333 489999999999999999999999999999888888776666 999999999999999999 8888
Q ss_pred hhc
Q 024753 230 IFD 232 (263)
Q Consensus 230 v~~ 232 (263)
...
T Consensus 253 al~ 255 (521)
T KOG2075|consen 253 ALT 255 (521)
T ss_pred hhC
Confidence 775
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=148.55 Aligned_cols=158 Identities=22% Similarity=0.385 Sum_probs=142.1
Q ss_pred HHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeC----CCCHHHHHHHHHhhcCC-CCc
Q 024753 88 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIP----DMSIDACQAFLSYIYGN-IEH 162 (263)
Q Consensus 88 l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~lL~fiYt~-~~~ 162 (263)
...++.+++.+||++.+-|.+++.||..|. .|+||.+||+|.|+|++.+.|.+. .++..+|..++.-+|.+ +.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 567888999999999999999999999998 899999999999999999877663 68999999999999976 555
Q ss_pred cccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHH
Q 024753 163 EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFL 241 (263)
Q Consensus 163 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl 241 (263)
.. +.+..++++|..+++++|.+.|.+.+++.+++.++...|..+.+|+.+.+++.|++++. |+..+.. .+.+
T Consensus 139 ~l--~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~-----~q~l 211 (488)
T KOG4682|consen 139 KL--SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQN-----VQLL 211 (488)
T ss_pred cH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhh-----HHHH
Confidence 55 88999999999999999999999999999999999999999999999999999999999 8888875 2366
Q ss_pred hhCcHHHHHHHH
Q 024753 242 QCADRELIAEVF 253 (263)
Q Consensus 242 ~~~~~~l~~~l~ 253 (263)
+..+.+|+..++
T Consensus 212 ~ei~~~Lm~~ll 223 (488)
T KOG4682|consen 212 KEISINLMKQLL 223 (488)
T ss_pred HhcCHHHHHHHh
Confidence 666777776554
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.73 E-value=3.1e-17 Score=116.73 Aligned_cols=90 Identities=34% Similarity=0.464 Sum_probs=80.9
Q ss_pred cEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHh
Q 024753 99 DIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADK 178 (263)
Q Consensus 99 Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~ 178 (263)
|+++.++|++|++||.+|+++|+||++||.+++.+.....+.+++.++++|+.+|+|+|++..... ..++.+++.+|++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~-~~~~~~l~~~a~~ 79 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLP-EENVEELLELADY 79 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecC-HHHHHHHHHHHHH
Confidence 789999999999999999999999999999988877788999999999999999999999833222 2589999999999
Q ss_pred hCcHHHHHHHH
Q 024753 179 YDICDLKEACH 189 (263)
Q Consensus 179 ~~~~~L~~~c~ 189 (263)
|+++.|...|+
T Consensus 80 ~~~~~l~~~c~ 90 (90)
T smart00225 80 LQIPGLVELCE 90 (90)
T ss_pred HCcHHHHhhhC
Confidence 99999999884
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.67 E-value=1.7e-16 Score=148.04 Aligned_cols=140 Identities=24% Similarity=0.412 Sum_probs=120.1
Q ss_pred CCcccEEEEe-cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCC-----CCccccHHH
Q 024753 95 GIHTDIIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGN-----IEHEEFLTH 168 (263)
Q Consensus 95 ~~~~Dv~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~-----~~~~~~~~~ 168 (263)
+..-|+.|.. +|+.++||+++|++|++||..||..-|.|+..-.+..-.+..+.++.+|+|+|+. .......+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3444666666 6778999999999999999999999898887755555566799999999999953 122223467
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccc
Q 024753 169 RLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIR 234 (263)
Q Consensus 169 ~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~ 234 (263)
+.+++.+||.|-+.+|+..|+..|.+.++..++..++++|..|++..|+..|++||. |...+...|
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999999999 888887755
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.82 E-value=4.9e-09 Score=99.03 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhCC----CcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCC------------cceEEeCCC
Q 024753 81 NATALASLGRMLTEG----IHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKE------------LSTIDIPDM 144 (263)
Q Consensus 81 ~~~l~~~l~~l~~~~----~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~------------~~~i~l~~~ 144 (263)
.+.+...+.+|+... .+.||||.||+..|+|||+||++||++|+.+|....+.+. ...|.++++
T Consensus 538 ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i 617 (1267)
T KOG0783|consen 538 SSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDI 617 (1267)
T ss_pred cccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccC
Confidence 445677788888654 4679999999999999999999999999999854322211 134668899
Q ss_pred CHHHHHHHHHhhcCC
Q 024753 145 SIDACQAFLSYIYGN 159 (263)
Q Consensus 145 ~~~~f~~lL~fiYt~ 159 (263)
+|..|+.+|+||||+
T Consensus 618 ~p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 618 PPLMFEILLHYIYTD 632 (1267)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999999987
No 13
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.62 E-value=2.9e-07 Score=80.44 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=103.2
Q ss_pred eEEehhHHHHhhcChhHHhhhcCCCCcCCc----ceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHhhCcH
Q 024753 107 GSTGAHRAVLAARSPVFRSMFSHDLKEKEL----STIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDIC 182 (263)
Q Consensus 107 ~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~----~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~~~~ 182 (263)
.++|||+.+++ |.+||+.||.|++.|+.. ....++.....+.+..++|+|++..... ++-+.+++-.|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~-~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII-FDVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch-HHHHhhHHHHhhHhhhh
Confidence 47999999998 889999999999998542 2355667788999999999998754433 46788899999998765
Q ss_pred --H-HHHHHHHHHHhc---CChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHHhhC
Q 024753 183 --D-LKEACHDSLVED---IDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCA 244 (263)
Q Consensus 183 --~-L~~~c~~~l~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl~~~ 244 (263)
+ |+.++.-.|++. ++.-++..++..++..+...|...+..|++ +...+.. -++..+-+..+
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~~~~s 446 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLP-DPEGDSSLRTS 446 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcC-CchhhHHHHhc
Confidence 2 566666666654 445678999999999999999999999999 7766654 33444444443
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.52 E-value=2e-07 Score=78.16 Aligned_cols=123 Identities=21% Similarity=0.292 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhhCCCcc-cEEEEe-cC--------------eEEehhHHHHhhcChhHHhhhcCCCCcCC---------
Q 024753 81 NATALASLGRMLTEGIHT-DIIINA-SN--------------GSTGAHRAVLAARSPVFRSMFSHDLKEKE--------- 135 (263)
Q Consensus 81 ~~~l~~~l~~l~~~~~~~-Dv~~~v-~~--------------~~~~aHr~iLaa~S~~F~~~f~~~~~e~~--------- 135 (263)
+..+-.+++.|++..-.- |+.+.+ +| .+++||+.|.++||++|+.++.....++.
T Consensus 219 ~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~ 298 (401)
T KOG2838|consen 219 FKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRR 298 (401)
T ss_pred chhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccC
Confidence 456667888899876544 444444 22 27999999999999999999865443332
Q ss_pred cceEEeCC-CCHHHHH-HHHHhhcCCCCc---------------------------cccHHHHHHHHHHHHhhCcHHHHH
Q 024753 136 LSTIDIPD-MSIDACQ-AFLSYIYGNIEH---------------------------EEFLTHRLALLRAADKYDICDLKE 186 (263)
Q Consensus 136 ~~~i~l~~-~~~~~f~-~lL~fiYt~~~~---------------------------~~~~~~~~~ll~~A~~~~~~~L~~ 186 (263)
...|.+++ +=|.+|. .+|+++||+... ..-...+++|+.+|.+|+++.|.+
T Consensus 299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23466664 4666665 678999996210 001134678888999999999999
Q ss_pred HHHHHHHhcCChhhHHH
Q 024753 187 ACHDSLVEDIDTKNVLE 203 (263)
Q Consensus 187 ~c~~~l~~~l~~~n~~~ 203 (263)
.|++.+......+++..
T Consensus 379 a~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 379 ACEDVIRKACAADLSNG 395 (401)
T ss_pred HHHHHHHhhhhhhcccc
Confidence 99988887666555443
No 15
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=73.06 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcc--eEEeCCCCHHHHHHHHHhh
Q 024753 79 RSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELS--TIDIPDMSIDACQAFLSYI 156 (263)
Q Consensus 79 ~~~~~l~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~--~i~l~~~~~~~f~~lL~fi 156 (263)
....++..++...++-....|+-+......|+|||++|++|||+|+.+.+.+-...... .|...+++..+|+++|+++
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 34567889999999888889999999999999999999999999999886642222111 2444578999999999999
Q ss_pred cCCCCccc--cHHHHHHHHHHHHhhCcHH
Q 024753 157 YGNIEHEE--FLTHRLALLRAADKYDICD 183 (263)
Q Consensus 157 Yt~~~~~~--~~~~~~~ll~~A~~~~~~~ 183 (263)
|+|....+ --++..-|-++..-|+.+.
T Consensus 192 ~tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 192 ITGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred HhcccchhhcCCchHHHHHHHHHhhCCch
Confidence 98732211 1244555666777777653
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.9e-05 Score=65.73 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=79.7
Q ss_pred EEEEecCeEEehhHHHHhhcChhHHhhhcCCCC--cCCcceEEeCCCCHHHHHHHHHhhcC-CCCccccHHHHHHHHHHH
Q 024753 100 IIINASNGSTGAHRAVLAARSPVFRSMFSHDLK--EKELSTIDIPDMSIDACQAFLSYIYG-NIEHEEFLTHRLALLRAA 176 (263)
Q Consensus 100 v~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~lL~fiYt-~~~~~~~~~~~~~ll~~A 176 (263)
|.+.|||..|..++.-|.....+|++|+..++. ...++.|-| |=+|.-|..+|+|+-. +.........+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 568899999999999999999999999988763 333455666 4599999999999994 444555568899999999
Q ss_pred HhhCcHHHHHHHHHHHHhc
Q 024753 177 DKYDICDLKEACHDSLVED 195 (263)
Q Consensus 177 ~~~~~~~L~~~c~~~l~~~ 195 (263)
.+|.++.|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987765
No 17
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.13 E-value=4.2e-06 Score=73.15 Aligned_cols=119 Identities=30% Similarity=0.289 Sum_probs=102.1
Q ss_pred CeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHH---HHHHHHHHhhCcH
Q 024753 106 NGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHR---LALLRAADKYDIC 182 (263)
Q Consensus 106 ~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~---~~ll~~A~~~~~~ 182 (263)
++.+.+|+.++++++++|+.|+..+..+.....+.+.+.+++.++.+..|.|....... .... ..++.+|.+++.+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~-~~~~~~~~~~~a~~f~~~~~ 187 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSS-VERIFEKHPDLAAAFKYKNR 187 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHH-HHHhhcCChhhhhccccccH
Confidence 56799999999999999999998877666667778889999999999999998533322 1233 3788899999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 024753 183 DLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV 225 (263)
Q Consensus 183 ~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 225 (263)
.++..|...+...+...++...+..+..++...+...|..++.
T Consensus 188 ~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (297)
T KOG1987|consen 188 HLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIA 230 (297)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHh
Confidence 9999999999999999998899999999999989988888887
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.91 E-value=2.4e-05 Score=56.39 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred EEEEecCeEEehhHHHHh-hcChhHHhhhcCC---CCcCCcceEEeCCCCHHHHHHHHHhhcC-CCCccccHHHHHHHHH
Q 024753 100 IIINASNGSTGAHRAVLA-ARSPVFRSMFSHD---LKEKELSTIDIPDMSIDACQAFLSYIYG-NIEHEEFLTHRLALLR 174 (263)
Q Consensus 100 v~~~v~~~~~~aHr~iLa-a~S~~F~~~f~~~---~~e~~~~~i~l~~~~~~~f~~lL~fiYt-~~~~~~~~~~~~~ll~ 174 (263)
|.|.|||+.|.+-+..|. ....+|.+|+.++ .....+..+-| |=+|+.|+.+|+|+-+ +............+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 5567999999864 33445567777 4699999999999987 4333322367889999
Q ss_pred HHHhhCcHHH-HHHH
Q 024753 175 AADKYDICDL-KEAC 188 (263)
Q Consensus 175 ~A~~~~~~~L-~~~c 188 (263)
-|++|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999988 5554
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.15 E-value=0.0028 Score=46.48 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred EEEEe-cCeEEehhHHHHhhcChhHHhhhcCCCCcC-CcceEEeCCCCHHHHHHHHHhhcC--CCCcc------------
Q 024753 100 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEK-ELSTIDIPDMSIDACQAFLSYIYG--NIEHE------------ 163 (263)
Q Consensus 100 v~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~-~~~~i~l~~~~~~~f~~lL~fiYt--~~~~~------------ 163 (263)
++++. +|.+|.+.+.+.. .|..++.|+.+...+. ....|.+++++..+++.+++|++. +....
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 56666 6779999999875 8999999996532222 225899999999999999999973 11110
Q ss_pred ----ccHHHHHHHHHHHHhhCc
Q 024753 164 ----EFLTHRLALLRAADKYDI 181 (263)
Q Consensus 164 ----~~~~~~~~ll~~A~~~~~ 181 (263)
...+.+.+|+.||+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 112356777777777654
No 20
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.12 E-value=0.00087 Score=48.66 Aligned_cols=46 Identities=26% Similarity=0.462 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHHhhCcHHHHH
Q 024753 201 VLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELIA 250 (263)
Q Consensus 201 ~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl~~~~~~l~~ 250 (263)
|+.++.+|..|++..|.+.|.+|+. ||.++.. .++|.+++...+..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~----~~~f~~L~~~~l~~ 47 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSK----SDEFLELPFDQLIE 47 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTT----SHHHHCS-HHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHcc----chhhhcCCHHHHHH
Confidence 6889999999999999999999999 9999998 78899877555543
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.03 E-value=0.0041 Score=44.22 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=59.9
Q ss_pred EEEEe-cCeEEehhHHHHhhcChhHHhhhcCCC--CcCCcceEEeCCCCHHHHHHHHHhh-c----CCC----C-ccccH
Q 024753 100 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDL--KEKELSTIDIPDMSIDACQAFLSYI-Y----GNI----E-HEEFL 166 (263)
Q Consensus 100 v~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~--~e~~~~~i~l~~~~~~~f~~lL~fi-Y----t~~----~-~~~~~ 166 (263)
|+++. +|.+|-.-|-+ |.-|+-.|+|++|+. .++..+++.+.++....++.+.+|+ | ++. . .+-..
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 55555 44566665554 557899999999764 5667789999999999999999998 3 332 1 11134
Q ss_pred HHHHHHHHHHHhhCc
Q 024753 167 THRLALLRAADKYDI 181 (263)
Q Consensus 167 ~~~~~ll~~A~~~~~ 181 (263)
+.+++||.+|+++++
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 889999999998863
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.82 E-value=0.007 Score=39.99 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=44.0
Q ss_pred EEEEe-cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhc
Q 024753 100 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY 157 (263)
Q Consensus 100 v~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiY 157 (263)
++++. +|+.|.+.+.+.. .|..++.|+.+...+.. .|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 55666 6779999998877 99999999976433322 79999999999999999986
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.65 E-value=0.0017 Score=57.30 Aligned_cols=96 Identities=23% Similarity=0.199 Sum_probs=64.8
Q ss_pred HHHHHHhhCCCc---ccEEEEe-cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCC--
Q 024753 86 ASLGRMLTEGIH---TDIIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGN-- 159 (263)
Q Consensus 86 ~~l~~l~~~~~~---~Dv~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~-- 159 (263)
.++..++.+..+ .|++|.. +|.-|-|||..|++||.+|...+..-+. ...+|+-..+-+.+|..+++|+|-+
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~~~~f~~flk~lyl~~n 212 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVILSAFSPFLKQLYLNTN 212 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhhHhhhhHHHHHHHHhhh
Confidence 446666666543 5888877 6678999999999999988765543221 2244554567889999999999944
Q ss_pred CCccccHHHHHHHHHHHHhhCcHHHHH
Q 024753 160 IEHEEFLTHRLALLRAADKYDICDLKE 186 (263)
Q Consensus 160 ~~~~~~~~~~~~ll~~A~~~~~~~L~~ 186 (263)
.... +.-.+|+.+..+|+.+.|-.
T Consensus 213 a~~~---~qynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 213 AEWK---DQYNALLSIEVKFSKEKLSL 236 (516)
T ss_pred hhhh---hHHHHHHhhhhhccHHHhHH
Confidence 2221 23366777777777665543
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.57 E-value=0.011 Score=51.61 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=79.4
Q ss_pred eEEehhHHHHhhcChhHHhhhcCCCC-cCCcceEEeC-CCCHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHhhCcHHH
Q 024753 107 GSTGAHRAVLAARSPVFRSMFSHDLK-EKELSTIDIP-DMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDL 184 (263)
Q Consensus 107 ~~~~aHr~iLaa~S~~F~~~f~~~~~-e~~~~~i~l~-~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~~~~~L 184 (263)
+.|.|.+.+|-..=.||+..+..... .....+|+|. .-+-.+|+=+++|+.+....- +..|+..++.-|++++|+.|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l-~~~NvvsIliSS~FL~M~~L 92 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSL-TPSNVVSILISSEFLQMESL 92 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcC-CcCcEEEeEehhhhhccHHH
Confidence 38999999999999999999965211 1122334443 357799999999999852222 24889999999999999999
Q ss_pred HHHHHHHHHhcCCh----------hhHHHHHHHHHhCCChHHHHH
Q 024753 185 KEACHDSLVEDIDT----------KNVLERLQNAYLYQLPKLKSS 219 (263)
Q Consensus 185 ~~~c~~~l~~~l~~----------~n~~~~l~~A~~~~~~~L~~~ 219 (263)
.+.|-.++..+++. -|---+..+|..+...+|..+
T Consensus 93 ve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~ 137 (317)
T PF11822_consen 93 VEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAA 137 (317)
T ss_pred HHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHh
Confidence 99999998776431 111224556666666655553
No 25
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.033 Score=44.12 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=70.5
Q ss_pred cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcC--CC---C-c-----c----------
Q 024753 105 SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYG--NI---E-H-----E---------- 163 (263)
Q Consensus 105 ~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt--~~---~-~-----~---------- 163 (263)
+|+.|.+-..+.. .|..+.+++...--......|.|+.++...|..+++|++. +. . . .
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6778888887765 7888888874321111115799999999999999999983 11 0 1 0
Q ss_pred ---ccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHH
Q 024753 164 ---EFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLE 203 (263)
Q Consensus 164 ---~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~ 203 (263)
.+..++.+++.||++|++++|.+.|++.+...+...+.-+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeE 134 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEE 134 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHH
Confidence 0124788999999999999999999998877664443333
No 26
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.04 E-value=0.0081 Score=43.05 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHHhhCcHHHH
Q 024753 201 VLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELI 249 (263)
Q Consensus 201 ~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl~~~~~~l~ 249 (263)
|+.++.+|..|++..|.+.|.+|+. ||..+.+ .++|++++...+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~----~~~f~~L~~~~l~ 46 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQ----SEEFLELSLEQLL 46 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhc----CcHHhcCCHHHHH
Confidence 4578889999999999999999999 9999876 5788877644443
No 27
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=96.02 E-value=0.0058 Score=53.67 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=106.7
Q ss_pred EEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHhh
Q 024753 100 IIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKY 179 (263)
Q Consensus 100 v~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~ 179 (263)
.++..+...+.+|+.+|+..|+.|..+....-..+....+.+-..+..++..+..++|......+.......++.+...|
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~ek~e~~~~~ihll~~~~~~ 108 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSSLEKHEMVFFDIHLLALSHVY 108 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccchhhhHHHHHHHHHHhhhhhh
Confidence 33334555999999999999999998875542333345566777888999999999998755555556778888888999
Q ss_pred CcHHHHHHHHHHHHh-cCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhc
Q 024753 180 DICDLKEACHDSLVE-DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFD 232 (263)
Q Consensus 180 ~~~~L~~~c~~~l~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~ 232 (263)
.++..+.-|...+.. .++..++..++..+..+....|...+...+. .|....+
T Consensus 109 ~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~ 163 (319)
T KOG1778|consen 109 VVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQ 163 (319)
T ss_pred hccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Confidence 999999988887776 5678899999999999999999999999888 7776665
No 28
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.78 E-value=0.046 Score=49.29 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=64.5
Q ss_pred EEEEecCeEEehhHHHHhhcC--hhHHhhhcCCCCcCCcc--eEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHHH
Q 024753 100 IIINASNGSTGAHRAVLAARS--PVFRSMFSHDLKEKELS--TIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRA 175 (263)
Q Consensus 100 v~~~v~~~~~~aHr~iLaa~S--~~F~~~f~~~~~e~~~~--~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~ 175 (263)
|.|.|||+.|.-.+.-|+... .+|.+++.+.+.-.+.. .|-| |=+|+.|..+|+|+-|+..+.........++.=
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 778999999999999987654 69999998776543322 2444 569999999999999974333322334556668
Q ss_pred HHhhCcHHHHH
Q 024753 176 ADKYDICDLKE 186 (263)
Q Consensus 176 A~~~~~~~L~~ 186 (263)
|.+|+++.|.+
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999998876
No 29
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.72 E-value=0.031 Score=46.16 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=67.5
Q ss_pred EEEEecCeEEehhHHHHhhcCh--hHHhhhcCCC---CcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHH
Q 024753 100 IIINASNGSTGAHRAVLAARSP--VFRSMFSHDL---KEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLR 174 (263)
Q Consensus 100 v~~~v~~~~~~aHr~iLaa~S~--~F~~~f~~~~---~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~ 174 (263)
|.+-++|+.|..-+.-|..|-| -..+||.+.- ++.++.-+-| |-+|.-|+.+|.|+-.|..+....-++..+++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 6677788887777666666544 5778886542 2333444544 56999999999999987555444578999999
Q ss_pred HHHhhCcHHHHHHHHH
Q 024753 175 AADKYDICDLKEACHD 190 (263)
Q Consensus 175 ~A~~~~~~~L~~~c~~ 190 (263)
.|++|++-.|++..++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999998887
No 30
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.09 E-value=0.4 Score=33.08 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCCh---hhHHHHHHHHH
Q 024753 166 LTHRLALLRAADKYDICDLKEACHDSLVEDIDT---KNVLERLQNAY 209 (263)
Q Consensus 166 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~---~n~~~~l~~A~ 209 (263)
...+.+|+.+|++++++.|.+.|...+...+.. +....++.+..
T Consensus 13 ~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 13 NDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 368999999999999999999999988876543 33444444443
No 31
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.87 E-value=1.2 Score=35.27 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=67.1
Q ss_pred cEEEEecCeEEehhHHHHhhcChhHH-hhhcCCCC---cCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHH
Q 024753 99 DIIINASNGSTGAHRAVLAARSPVFR-SMFSHDLK---EKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLR 174 (263)
Q Consensus 99 Dv~~~v~~~~~~aHr~iLaa~S~~F~-~~f~~~~~---e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~ 174 (263)
=|.+.|||..|..-|.-|+.-+.-|- .+...... .....--.+-|=+|.-|..+|+|+-.|....+. -.-..+|+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~eeGvL~ 100 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLE 100 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhhccch
Confidence 46777899999999999998774554 44444321 122222344466899999999999866332221 23356899
Q ss_pred HHHhhCcHHHHHHHHHHHHhc
Q 024753 175 AADKYDICDLKEACHDSLVED 195 (263)
Q Consensus 175 ~A~~~~~~~L~~~c~~~l~~~ 195 (263)
-|+.|.++.|.....+.|.+.
T Consensus 101 EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhhccCChHHHHHHHHHHHHH
Confidence 999999999999988888765
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=2.5 Score=31.97 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=67.4
Q ss_pred EEEEe-cCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhc--CCC-------------Ccc
Q 024753 100 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY--GNI-------------EHE 163 (263)
Q Consensus 100 v~~~v-~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiY--t~~-------------~~~ 163 (263)
+.++. +|..|.+.+.+ |-||-..+.|+... . ...-.+..+.+...+|..+++|+- ++. .+.
T Consensus 4 i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDENI-AERSILIKNMLCDS-T-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHHH-HHHHHHHHHHhccc-c-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 45555 66678777655 66888888887542 1 122346677999999999999996 221 111
Q ss_pred cc---------HHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChh
Q 024753 164 EF---------LTHRLALLRAADKYDICDLKEACHDSLVEDIDTK 199 (263)
Q Consensus 164 ~~---------~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~ 199 (263)
+. .+++.++..+|+++.++.|.+.|+..+...+...
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgk 125 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGK 125 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccC
Confidence 11 2557888999999999999999998877765533
No 33
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=79.74 E-value=5.4 Score=34.82 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCcccEEEEecCeEEehhHHHHhhcC-hhHHhhhcCCCC---cCCcceEEeC-CCCHHHHHHHHHhhcCCCCccccHHHH
Q 024753 95 GIHTDIIINASNGSTGAHRAVLAARS-PVFRSMFSHDLK---EKELSTIDIP-DMSIDACQAFLSYIYGNIEHEEFLTHR 169 (263)
Q Consensus 95 ~~~~Dv~~~v~~~~~~aHr~iLaa~S-~~F~~~f~~~~~---e~~~~~i~l~-~~~~~~f~~lL~fiYt~~~~~~~~~~~ 169 (263)
+..--++..+++..|-+.+.+|.+.- .-.-.||.+++. .+...+.++. +++..+|+++|+|.-+|+......-.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSv 172 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 172 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCch
Confidence 33445788888889999888887542 233455655432 2233455554 789999999999988885444434667
Q ss_pred HHHHHHHHhhCcH
Q 024753 170 LALLRAADKYDIC 182 (263)
Q Consensus 170 ~~ll~~A~~~~~~ 182 (263)
-+|-++.|++.++
T Consensus 173 pELrEACDYLlip 185 (438)
T KOG3840|consen 173 SELREACDYLLVP 185 (438)
T ss_pred HHHHhhcceEEee
Confidence 7888888887665
No 34
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=75.58 E-value=1.5 Score=38.58 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=45.2
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhccccchHHHHhhCcHHHHHHH
Q 024753 195 DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELIAEV 252 (263)
Q Consensus 195 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~fl~~~~~~l~~~l 252 (263)
.++++|++.++.-++....+.|.+.|+.|+. |..+|.. .+--+.-.+.+|+..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~----~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVA----SPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHc----CCCCcccCCHHHHHHH
Confidence 5789999999999999999999999999999 9999988 5555555566666654
No 35
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=74.10 E-value=8.2 Score=35.80 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 024753 196 IDTKNVLERLQNAYLYQLPKLKSSCMRYLV 225 (263)
Q Consensus 196 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 225 (263)
+..+|++.++..|.+|....|.+.|++||.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr 214 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR 214 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578999999999999999999999999997
No 36
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=72.07 E-value=15 Score=25.94 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHh--CCChHHHHHHHHHHH-HHH
Q 024753 170 LALLRAADKYDICDLKEACHDSLVEDID------------TKNVLERLQNAYL--YQLPKLKSSCMRYLV-KFG 228 (263)
Q Consensus 170 ~~ll~~A~~~~~~~L~~~c~~~l~~~l~------------~~n~~~~l~~A~~--~~~~~L~~~~~~~i~-~~~ 228 (263)
.+++..|..|+++.|...|.+++..++. .+....++.--.. .+-..+.+.+.+|+. +..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 4688999999999999999999987632 2233333332211 234578899999998 543
No 37
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.89 E-value=10 Score=31.68 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=56.8
Q ss_pred cccE-EEEecCeEEehhHH-HHhhcChhHHhhhcCCCC--cCCcceEEeCCCCHHHHHHHHHhhcCC-CCccccHHHHHH
Q 024753 97 HTDI-IINASNGSTGAHRA-VLAARSPVFRSMFSHDLK--EKELSTIDIPDMSIDACQAFLSYIYGN-IEHEEFLTHRLA 171 (263)
Q Consensus 97 ~~Dv-~~~v~~~~~~aHr~-iLaa~S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~lL~fiYt~-~~~~~~~~~~~~ 171 (263)
+.|+ .+-|||..+..-.. ..+-.-....+||++... .......-| |=+-..|+.+|+|+-+. ....+.-.++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 4454 45566665543333 223334456667765321 111233434 34668999999999984 334443477889
Q ss_pred HHHHHHhhCcHHHHHHHHH
Q 024753 172 LLRAADKYDICDLKEACHD 190 (263)
Q Consensus 172 ll~~A~~~~~~~L~~~c~~ 190 (263)
|..-|++|+++.+.....+
T Consensus 86 L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHccccHHHHHhc
Confidence 9999999999977775554
No 38
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=67.57 E-value=9.4 Score=27.28 Aligned_cols=28 Identities=39% Similarity=0.592 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 024753 198 TKNVLERLQNAYLYQLPKLKSSCMRYLV 225 (263)
Q Consensus 198 ~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 225 (263)
.+++..++.+|..++.+.|.+.|.+++.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7899999999999999999999999987
No 39
>PHA03098 kelch-like protein; Provisional
Probab=54.41 E-value=19 Score=33.98 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=29.0
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 024753 195 DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV 225 (263)
Q Consensus 195 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 225 (263)
.++.+|+.+++..|+.++.+.|++.|.+|+.
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3678899999999999999999999999998
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=46.74 E-value=36 Score=31.90 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcC
Q 024753 148 ACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDI 196 (263)
Q Consensus 148 ~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 196 (263)
+.+...+|+-..+. .+|..+++.+|+.|++++|.+.+.+++.+++
T Consensus 108 v~~~C~~fL~~~l~----~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 108 IIYTCINFILRDFR----KEYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHHHHHhhCC----cchHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 34445566654433 2679999999999999999999999988863
No 41
>PHA02713 hypothetical protein; Provisional
Probab=39.61 E-value=44 Score=32.04 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=29.6
Q ss_pred cCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 024753 195 DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV 225 (263)
Q Consensus 195 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 225 (263)
.++.+|+..++..|..++.+.|++.|.+|+.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998
No 42
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=38.50 E-value=43 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHhc
Q 024753 170 LALLRAADKYDICDLKEACHDSLVED 195 (263)
Q Consensus 170 ~~ll~~A~~~~~~~L~~~c~~~l~~~ 195 (263)
.+++.+|+.|+.+.|...|.+++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999987765
No 43
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=34.82 E-value=40 Score=25.18 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=44.6
Q ss_pred cCeEEehhHHHHhhcChhHHhh-hcCCCCcCCcceEEeC-CC--CHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHhhC
Q 024753 105 SNGSTGAHRAVLAARSPVFRSM-FSHDLKEKELSTIDIP-DM--SIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYD 180 (263)
Q Consensus 105 ~~~~~~aHr~iLaa~S~~F~~~-f~~~~~e~~~~~i~l~-~~--~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~~ 180 (263)
++..+.+|-.+++.+||..... |.=+ =+. ..+..| |+ -.+.....|.++|.+....+ -...++.++-|.+-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~Ip--Y~~-~~ii~PFDFNglEe~I~~~l~~mY~~s~~~e--fk~EDmve~IDIlm 94 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIP--YTH-EGIIPPFDFNGLEEGIKNTLKIMYKDSKIEE--FKQEDMVEAIDILM 94 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEe--ccC-CCeECCcccCcHHHHHHHHHHHHhCCCCccc--ccHHHHHhhhheee
Confidence 5679999999999999988753 2111 111 112222 22 56788999999998755444 23444555555544
Q ss_pred cH
Q 024753 181 IC 182 (263)
Q Consensus 181 ~~ 182 (263)
++
T Consensus 95 me 96 (117)
T PF09593_consen 95 ME 96 (117)
T ss_pred ec
Confidence 43
No 44
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=28.36 E-value=2.3e+02 Score=20.42 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=37.4
Q ss_pred EEEEecC--eEEehhHHHHhhcChhHHhhhcCCCCc---CCcceEEeCCCCHHHHHHHHHhh
Q 024753 100 IIINASN--GSTGAHRAVLAARSPVFRSMFSHDLKE---KELSTIDIPDMSIDACQAFLSYI 156 (263)
Q Consensus 100 v~~~v~~--~~~~aHr~iLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~lL~fi 156 (263)
+.+.||+ ++|-++...| ..|.|+.++...-.| .....|.|+ -+...|+.+|..|
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 5666655 4888888888 478999998542111 234568887 5778898888765
No 45
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=26.06 E-value=5.6e+02 Score=24.17 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=54.1
Q ss_pred cEEEEecCeEEehhHHHHhhcChh--HHhhhcCC----------CCcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccH
Q 024753 99 DIIINASNGSTGAHRAVLAARSPV--FRSMFSHD----------LKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFL 166 (263)
Q Consensus 99 Dv~~~v~~~~~~aHr~iLaa~S~~--F~~~f~~~----------~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~ 166 (263)
-|.+.|||.++...+..|.. .|- ...+.... --+...++.-+ |=+|.+|..+++|.+||...-...
T Consensus 32 ~i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~P~~F~~Vl~fYrtGkLH~p~~ 109 (477)
T KOG3713|consen 32 RVRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRHPGAFAYVLNFYRTGKLHVPAD 109 (477)
T ss_pred EEEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCcccCeeee-ccChHHHHHHHHHHhcCeeccccc
Confidence 57888899988877777754 221 11111100 00122344444 348999999999999984333222
Q ss_pred HHHHHHHHHHHhhCcH--HHHHHHHHHHHhc
Q 024753 167 THRLALLRAADKYDIC--DLKEACHDSLVED 195 (263)
Q Consensus 167 ~~~~~ll~~A~~~~~~--~L~~~c~~~l~~~ 195 (263)
-......+=-++++++ .+-..|.....++
T Consensus 110 vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~ 140 (477)
T KOG3713|consen 110 VCPLSFEEELDYWGIDEAHLESCCWMRYRQR 140 (477)
T ss_pred cchHHHHHHHHHhCCChhhhhHHhHHHHhhc
Confidence 3445555556777776 3444555555443
No 46
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.86 E-value=66 Score=29.49 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHhc
Q 024753 166 LTHRLALLRAADKYDICDLKEACHDSLVED 195 (263)
Q Consensus 166 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 195 (263)
..++...+++|.+|+++.++..|.++|..+
T Consensus 172 pkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 172 PKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 378999999999999999999999998775
No 47
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=22.97 E-value=35 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=19.8
Q ss_pred ccccchhhhhhcc-------cCCCCceeeecccccc
Q 024753 18 CFDIYAEITDRQL-------KNNDDFVWAIEVPLTG 46 (263)
Q Consensus 18 ~~~~~~~~~~~~l-------~~~d~~~~~~d~~~~~ 46 (263)
++.+..++.+..| ..||+++++|+|++++
T Consensus 103 ~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 103 DWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred ccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 4455555555444 3689999999999865
No 48
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=20.98 E-value=1.1e+02 Score=18.75 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHH--HHHhhh
Q 024753 198 TKNVLERLQNAYLYQLPKLKSSCMRYLV--KFGKIF 231 (263)
Q Consensus 198 ~~n~~~~l~~A~~~~~~~L~~~~~~~i~--~~~~v~ 231 (263)
...+..++-.|+......+.+.|..-|. +|.++.
T Consensus 10 l~YV~nmLivA~d~~f~~v~~~C~Atii~yHf~DF~ 45 (48)
T PF06887_consen 10 LMYVCNMLIVAHDARFGNVQNCCIATIISYHFHDFI 45 (48)
T ss_pred HHHHHhHheeeccccchHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888998887776 665553
Done!