Query 024756
Match_columns 263
No_of_seqs 117 out of 1221
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 2.4E-07 8.4E-12 72.4 5.2 68 79-152 34-103 (137)
2 3b5d_A Multidrug transporter E 98.3 6.8E-07 2.3E-11 67.2 5.8 68 79-152 34-103 (110)
3 2i68_A Protein EMRE; transmemb 16.1 3.3E+02 0.011 20.1 5.9 49 189-238 34-83 (137)
4 3arc_L Photosystem II reaction 6.4 4.3E+02 0.015 14.9 3.1 19 182-200 18-36 (37)
5 3arc_T Photosystem II reaction 6.3 4.2E+02 0.014 14.6 2.4 14 116-129 17-30 (32)
6 3mp7_B Preprotein translocase 6.0 1.4E+02 0.0047 19.1 0.3 25 124-148 23-47 (61)
7 2hac_A T-cell surface glycopro 5.7 3.4E+02 0.012 15.1 1.8 16 114-129 16-31 (33)
8 3b5d_A Multidrug transporter E 4.9 8.6E+02 0.03 16.7 7.0 49 189-238 34-83 (110)
9 2wwb_B SEC61gamma, protein tra 4.0 1.8E+02 0.0061 19.1 -0.2 25 124-148 26-50 (68)
10 2jp3_A FXYD domain-containing 3.8 5.3E+02 0.018 16.8 1.9 15 137-151 23-37 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.41 E-value=2.4e-07 Score=72.35 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=52.2
Q ss_pred HHHHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756 79 LLGLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL 152 (263)
Q Consensus 79 l~g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~ 152 (263)
+.+++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++.. +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456666 8899999999999999999888 89999999999999999999999 99999999999999875
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.33 E-value=6.8e-07 Score=67.19 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=62.2
Q ss_pred HHHHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756 79 LLGLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL 152 (263)
Q Consensus 79 l~g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~ 152 (263)
..+++. ..++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++.. |++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455666 8899999999999999999887 79999999999999999999999 99999999999998864
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=16.14 E-value=3.3e+02 Score=20.09 Aligned_cols=49 Identities=12% Similarity=-0.017 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHH-HHhcCCc
Q 024756 189 VLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFS-VIVENDI 238 (263)
Q Consensus 189 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~ 238 (263)
+++.++++++.++.-+..++.|.......|.. .+.+....++ ++++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~-l~pv~~~l~g~l~lgE~l 83 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQRL 83 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHH-HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 34445555555555555566643333333333 3333333333 3445543
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.44 E-value=4.3e+02 Score=14.92 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024756 182 LIGGLLLVLVCISSAIWNV 200 (263)
Q Consensus 182 ~~G~~~~l~aa~~~a~~~v 200 (263)
.+|.++++.-++.++.|..
T Consensus 18 y~GLLlifvlavlFssyff 36 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 5799999999999888753
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.32 E-value=4.2e+02 Score=14.62 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=8.9
Q ss_pred HHHHHHhhcccccc
Q 024756 116 LLAVIFRIEKLDLR 129 (263)
Q Consensus 116 ila~l~~~e~~~~~ 129 (263)
+.-.++++|+++..
T Consensus 17 iFFAI~FRePPri~ 30 (32)
T 3arc_T 17 FFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHTSCCCCCC
T ss_pred HHHhhhhcCCCCCC
Confidence 33445678888765
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=6.01 E-value=1.4e+02 Score=19.14 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=15.8
Q ss_pred ccccccccCccccchhHHHHHHHHH
Q 024756 124 EKLDLRRSSSQAKTLGATVAVTGAF 148 (263)
Q Consensus 124 e~~~~~~~~~~~~~~g~~l~~~G~~ 148 (263)
+||++.+...-++..|+.+.++|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555556667777666654
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.68 E-value=3.4e+02 Score=15.07 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcccccc
Q 024756 114 TFLLAVIFRIEKLDLR 129 (263)
Q Consensus 114 ~~ila~l~~~e~~~~~ 129 (263)
.+++..++.+||+...
T Consensus 16 gii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 16 GVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3455566777777654
No 8
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=4.89 E-value=8.6e+02 Score=16.68 Aligned_cols=49 Identities=12% Similarity=-0.045 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHH-HHhcCCc
Q 024756 189 VLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFS-VIVENDI 238 (263)
Q Consensus 189 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~ 238 (263)
+++.+++.++....-+..|+.|-......|. ..+.+.....+ ++++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~-g~~~v~~~l~~~~~~~E~~ 83 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS-GVGIVLISLLSWGFFGQRL 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHh-hHHHHHHHHHHHHHhCCCC
Confidence 4555555555555555566664333333333 23333333444 3445543
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=3.95 E-value=1.8e+02 Score=19.06 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccccccccCccccchhHHHHHHHHH
Q 024756 124 EKLDLRRSSSQAKTLGATVAVTGAF 148 (263)
Q Consensus 124 e~~~~~~~~~~~~~~g~~l~~~G~~ 148 (263)
.||++.+...-++..|+.++++|.+
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~I 50 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFI 50 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.83 E-value=5.3e+02 Score=16.77 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHH
Q 024756 137 TLGATVAVTGAFMIT 151 (263)
Q Consensus 137 ~~g~~l~~~G~~ll~ 151 (263)
+++.++.+.|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Done!