Query 024756
Match_columns 263
No_of_seqs 117 out of 1221
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 13:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024756.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024756hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.9 90 0.0065 14.9 2.9 17 183-199 3-19 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 8.9 1.1E+02 0.0083 14.8 2.1 9 119-127 20-28 (30)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 6.1 2.1E+02 0.015 14.7 3.1 19 182-200 18-36 (37)
4 d1l7va_ f.22.1.1 (A:) ABC tran 2.9 9.7E+02 0.071 18.0 6.2 24 136-159 64-87 (324)
5 d1jb0l_ f.31.1.1 (L:) Photosys 2.5 8.6E+02 0.063 16.5 5.8 54 182-235 77-136 (151)
6 d1q90a3 f.23.23.1 (A:248-292) 2.3 5.5E+02 0.04 13.7 4.5 30 180-209 3-32 (45)
7 d1xioa_ f.13.1.1 (A:) Sensory 2.2 1E+03 0.075 16.6 19.6 17 108-124 78-94 (226)
8 d1q90n_ f.23.27.1 (N:) PetN su 2.1 5E+02 0.036 12.5 2.9 17 187-203 11-27 (31)
9 d3cx5c1 f.32.1.1 (C:262-385) M 1.8 6.3E+02 0.046 16.4 2.3 22 180-201 26-47 (124)
10 d1vf5c3 f.23.23.1 (C:250-286) 1.7 6.6E+02 0.048 12.8 3.5 26 180-205 4-29 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.91 E-value=90 Score=14.93 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024756 183 IGGLLLVLVCISSAIWN 199 (263)
Q Consensus 183 ~G~~~~l~aa~~~a~~~ 199 (263)
+|.+..-++.+.|+.|-
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57778888888888773
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.88 E-value=1.1e+02 Score=14.82 Aligned_cols=9 Identities=33% Similarity=0.220 Sum_probs=5.4
Q ss_pred HHHhhcccc
Q 024756 119 VIFRIEKLD 127 (263)
Q Consensus 119 ~l~~~e~~~ 127 (263)
.++++|+++
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 345677765
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.07 E-value=2.1e+02 Score=14.74 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024756 182 LIGGLLLVLVCISSAIWNV 200 (263)
Q Consensus 182 ~~G~~~~l~aa~~~a~~~v 200 (263)
.+|.++++.-++.++.|..
T Consensus 18 y~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5799999988888888753
No 4
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=2.95 E-value=9.7e+02 Score=18.05 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=18.3
Q ss_pred cchhHHHHHHHHHHHHhhcCcccc
Q 024756 136 KTLGATVAVTGAFMITLYRGPLLL 159 (263)
Q Consensus 136 ~~~g~~l~~~G~~ll~~~~~~~~~ 159 (263)
-..|..++++|+++=...|||..+
T Consensus 64 ~l~Ga~La~sG~~lQ~~~rNpLA~ 87 (324)
T d1l7va_ 64 LLVGAALAISGAVMQALFENPLAE 87 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 567888999998887666787644
No 5
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.53 E-value=8.6e+02 Score=16.50 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchH-HHHHH-----HHHHHHHHHHHHHHHhc
Q 024756 182 LIGGLLLVLVCISSAIWNVAQAATIRGYPEEM-TVVFF-----YTFFITIQALCFSVIVE 235 (263)
Q Consensus 182 ~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~-~~~~~-----~~~~~~i~~l~~~~~~~ 235 (263)
+-+..+++..+.|.++|...+..-....++++ +.-.| .+++|+..-..+++++-
T Consensus 77 lsaiglv~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg~GGa~fAy~Ll 136 (151)
T d1jb0l_ 77 ISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCcccccCcccHHHhhchhhhccccHHHHHHHHH
Confidence 34566777888888999887654222112232 22233 44455555555555443
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.34 E-value=5.5e+02 Score=13.75 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 024756 180 EWLIGGLLLVLVCISSAIWNVAQAATIRGY 209 (263)
Q Consensus 180 ~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~ 209 (263)
....|.+..+.+.+.--+..|+-||.-++.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688877777777777777777654443
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.22 E-value=1e+03 Score=16.62 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHhhc
Q 024756 108 NLIPIYTFLLAVIFRIE 124 (263)
Q Consensus 108 ~~~Pv~~~ila~l~~~e 124 (263)
-++|+....+......+
T Consensus 78 lTtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 78 VTTPLLLLSLSWTAMQF 94 (226)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HcccHHHHHHHHHHHHh
Confidence 57899888887655333
No 8
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.08 E-value=5e+02 Score=12.51 Aligned_cols=17 Identities=18% Similarity=-0.039 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024756 187 LLVLVCISSAIWNVAQA 203 (263)
Q Consensus 187 ~~l~aa~~~a~~~v~~k 203 (263)
..+++.+++++..+.-.
T Consensus 11 aa~~atfsfslslvvwg 27 (31)
T d1q90n_ 11 AATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhheeeEEEEEEe
Confidence 45677888888776543
No 9
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.77 E-value=6.3e+02 Score=16.37 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 024756 180 EWLIGGLLLVLVCISSAIWNVA 201 (263)
Q Consensus 180 ~~~~G~~~~l~aa~~~a~~~v~ 201 (263)
+...|.+..++|-+...+--.+
T Consensus 26 ~k~~Gvl~~~~si~il~~lP~l 47 (124)
T d3cx5c1 26 DKLLGVITMFAAILVLLVLPFT 47 (124)
T ss_dssp SHHHHHHHHHHHHHGGGGHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHH
Confidence 3355777777776665555444
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.72 E-value=6.6e+02 Score=12.83 Aligned_cols=26 Identities=0% Similarity=0.018 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024756 180 EWLIGGLLLVLVCISSAIWNVAQAAT 205 (263)
Q Consensus 180 ~~~~G~~~~l~aa~~~a~~~v~~k~~ 205 (263)
....|.+..+.+...--+..|+-||.
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ 29 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777766666655666655543
Done!