BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024757
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
Regularized Mean Structure
pdb|5GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
35 Structures
Length = 66
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHS 219
+ G CT+C ++ TP WR P G + LCNACG+ K +V RP S T V+ + +
Sbjct: 6 QNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVV---RPLSLKTDVIKKRN 60
>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, 34 Structures
pdb|6GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, Regularized Mean Structure
Length = 66
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHS 219
+ G CT+C ++ TP WR P G + LCNACG+ K +V RP S T V+ + +
Sbjct: 6 QNGPTTCTNCFTQTTPVWRRNPEG-QPLCNACGLFLKLHGVV---RPLSLKTDVIKKRN 60
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine
Gata-1, Nmr, 25 Structures
Length = 46
Score = 34.7 bits (78), Expect = 0.050, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
R C +C + TP WR G LCNACG+ +K
Sbjct: 5 RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 34.7 bits (78), Expect = 0.050, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
R C +C + TP WR G LCNACG+ +K
Sbjct: 3 RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 34.7 bits (78), Expect = 0.052, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
R C +C + TP WR G LCNACG+ +K
Sbjct: 5 RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36
>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|J Chain J, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|K Chain K, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|L Chain L, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|M Chain M, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|N Chain N, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|O Chain O, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|P Chain P, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|I Chain I, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|J Chain J, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|K Chain K, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|L Chain L, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|M Chain M, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|N Chain N, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|O Chain O, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|P Chain P, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|I Chain I, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|J Chain J, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|K Chain K, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|L Chain L, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|M Chain M, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|N Chain N, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|O Chain O, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|P Chain P, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 43
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
CT+C ++ TP WR P G + LCNACG+ K
Sbjct: 4 CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33
>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc
Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
pdb|1GAU|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc
Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
Length = 60
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
C++C + T WR P+G +CNACG+ YK
Sbjct: 7 CSNCQTSTTTLWRRSPMG-DPVCNACGLYYK 36
>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of Chicken
Gata-1 Bound To Dna, 34 Structures
pdb|2GAT|A Chain A, Solution Structure Of The C-Terminal Domain Of Chicken
Gata- 1 Bound To Dna, Nmr, Regularized Mean Structure
Length = 66
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
C++C + T WR P+G +CNACG+ YK
Sbjct: 7 CSNCQTSTTTLWRRSPMGD-PVCNACGLYYK 36
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK-SGRLVPEYRP 207
R C +C + TP WR G LCNACG+ +K +G+ P RP
Sbjct: 2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIRP 45
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK-SGRLVPEYRP 207
R C +C + TP WR G LCNACG+ +K +G+ P +P
Sbjct: 6 RECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKP 48
>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding
pdb|3DFV|C Chain C, Adjacent Gata Dna Binding
pdb|3DFX|A Chain A, Opposite Gata Dna Binding
pdb|3DFX|B Chain B, Opposite Gata Dna Binding
Length = 63
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197
C +C + T WR G +CNACG+ YK
Sbjct: 10 CANCQTTTTTLWRRNANG-DPVCNACGLYYK 39
>pdb|2J7A|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|G Chain G, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|H Chain H, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|J Chain J, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|K Chain K, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|M Chain M, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|N Chain N, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|P Chain P, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|Q Chain Q, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
Length = 500
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 145 NSKQKRENHRQSSPIPEGGVRRCTHCASEKTP 176
+ K+K +H +SP+ + +R C C S+KTP
Sbjct: 303 DDKKKISSHWWTSPMKDPEMRACRQCHSDKTP 334
>pdb|2VR0|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
Length = 524
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 145 NSKQKRENHRQSSPIPEGGVRRCTHCASEKTP 176
+ K+K +H +SP+ + +R C C S+KTP
Sbjct: 327 DDKKKISSHWWTSPMKDPEMRACRQCHSDKTP 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,078,294
Number of Sequences: 62578
Number of extensions: 186902
Number of successful extensions: 234
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 15
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)