Query 024757
Match_columns 263
No_of_seqs 205 out of 801
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 6.9E-18 2.4E-22 124.8 3.5 55 162-220 5-59 (63)
2 4gat_A Nitrogen regulatory pro 99.7 7.9E-18 2.7E-22 125.4 2.0 57 161-221 6-62 (66)
3 1gnf_A Transcription factor GA 99.6 2.2E-16 7.6E-21 110.3 4.2 43 163-209 3-45 (46)
4 2vut_I AREA, nitrogen regulato 99.6 1.3E-16 4.4E-21 110.0 2.1 41 165-209 2-42 (43)
5 4hc9_A Trans-acting T-cell-spe 99.5 2.7E-15 9.2E-20 121.7 3.6 54 162-219 57-110 (115)
6 2kae_A GATA-type transcription 99.5 7.7E-16 2.6E-20 116.3 -0.5 47 162-211 6-52 (71)
7 4hc9_A Trans-acting T-cell-spe 99.3 8.8E-13 3E-17 106.9 2.3 45 163-211 4-48 (115)
8 1pft_A TFIIB, PFTFIIBN; N-term 68.4 2.4 8.1E-05 28.5 1.8 41 164-207 5-47 (50)
9 3cw2_K Translation initiation 67.7 2.6 9E-05 34.9 2.3 32 164-196 103-134 (139)
10 2d74_B Translation initiation 66.1 2.8 9.5E-05 35.1 2.2 31 165-196 105-135 (148)
11 1dl6_A Transcription factor II 65.1 3.8 0.00013 28.9 2.4 41 165-208 12-54 (58)
12 1nee_A EIF-2-beta, probable tr 61.4 2.7 9.3E-05 34.7 1.2 30 165-195 103-132 (138)
13 1k81_A EIF-2-beta, probable tr 59.1 1.1 3.7E-05 29.2 -1.3 31 166-197 2-32 (36)
14 3k7a_M Transcription initiatio 57.5 7.3 0.00025 35.5 3.5 43 164-207 21-65 (345)
15 2yrk_A Zinc finger homeobox pr 53.6 5.6 0.00019 28.6 1.6 37 180-229 7-43 (55)
16 2crr_A Stromal membrane-associ 51.8 11 0.00038 31.0 3.4 50 163-214 28-78 (141)
17 1qyp_A RNA polymerase II; tran 50.0 3 0.0001 28.8 -0.3 34 164-197 15-54 (57)
18 2owa_A Arfgap-like finger doma 49.3 7.7 0.00026 32.0 2.0 50 163-214 35-85 (138)
19 2iqj_A Stromal membrane-associ 46.0 9 0.00031 31.3 1.9 49 163-213 26-75 (134)
20 3cng_A Nudix hydrolase; struct 40.6 8.7 0.0003 31.0 1.0 31 163-193 2-32 (189)
21 2g2k_A EIF-5, eukaryotic trans 40.3 4.7 0.00016 34.5 -0.6 32 165-197 97-130 (170)
22 2crw_A ARF GAP 3, ADP-ribosyla 39.6 18 0.00061 30.2 2.8 48 163-212 28-76 (149)
23 3dwd_A ADP-ribosylation factor 39.4 13 0.00044 31.2 1.9 50 163-214 37-87 (147)
24 2e9h_A EIF-5, eukaryotic trans 37.1 7 0.00024 33.0 -0.0 32 165-197 104-137 (157)
25 2b0o_E UPLC1; arfgap, structur 37.0 16 0.00053 31.7 2.2 45 164-210 42-87 (301)
26 2yrc_A Protein transport prote 36.8 16 0.00056 25.9 1.9 43 161-206 6-50 (59)
27 2zjr_Z 50S ribosomal protein L 34.4 13 0.00045 26.6 1.0 24 163-195 29-52 (60)
28 2p57_A GTPase-activating prote 33.9 14 0.00047 30.8 1.2 47 163-211 36-83 (144)
29 2olm_A Nucleoporin-like protei 32.2 22 0.00075 29.2 2.2 48 163-213 24-72 (140)
30 1tfi_A Transcriptional elongat 28.4 13 0.00046 25.4 0.2 36 162-197 7-48 (50)
31 3sub_A ADP-ribosylation factor 28.1 25 0.00087 29.9 1.9 49 164-214 22-71 (163)
32 3po3_S Transcription elongatio 27.9 21 0.0007 30.2 1.3 36 162-197 135-176 (178)
33 4bbr_M Transcription initiatio 25.1 17 0.00059 33.3 0.4 33 164-197 21-53 (345)
34 1pqv_S STP-alpha, transcriptio 24.0 25 0.00084 32.0 1.2 34 164-197 268-307 (309)
35 3jue_A Arfgap with coiled-coil 22.6 38 0.0013 30.8 2.1 33 163-197 44-76 (368)
36 1j2m_A CPI-17, 17-kDa PKC-pote 22.5 32 0.0011 27.3 1.4 25 3-29 42-66 (99)
37 2bsj_A Chaperone protein SYCT; 21.8 20 0.00068 29.4 0.1 16 78-93 95-111 (133)
38 3v2d_5 50S ribosomal protein L 21.5 23 0.00079 25.3 0.4 24 164-197 30-53 (60)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.69 E-value=6.9e-18 Score=124.83 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=47.0
Q ss_pred CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCcccccccc
Q 024757 162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSN 220 (263)
Q Consensus 162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsn 220 (263)
.....|.||+++.||+||+||.|+ +|||||||||++. ..+||+.+.+++|+.+.+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---~~~RP~~~~~~~i~~R~R 59 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---NINRPLTMKKEGIQTRNR 59 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---SSCCCGGGCCSSCCCCC-
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---CCCCCcCcCCCccccccC
Confidence 455789999999999999999996 9999999999954 457999999888876543
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.67 E-value=7.9e-18 Score=125.43 Aligned_cols=57 Identities=40% Similarity=0.767 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCccccccccc
Q 024757 161 EGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNS 221 (263)
Q Consensus 161 ~~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsns 221 (263)
.+..+.|.||++++||+||+||.|. +|||||||||+ ++...||+.+++++|+++.+.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~---~~~~~RP~~~k~~~ik~R~R~ 62 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLK---LHGVVRPLSLKTDVIKKRNRN 62 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHH---HHCSCCCGGGCCSCCCCCCCS
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHH---HcCCCCchhhccccccccccC
Confidence 4667899999999999999999995 99999999999 556679999999888766543
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.62 E-value=2.2e-16 Score=110.30 Aligned_cols=43 Identities=40% Similarity=0.803 Sum_probs=37.4
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCC
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~ 209 (263)
..+.|.||++++||+||+||.|+ +|||||||||++ +...||+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~ 45 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM---NGQNRPLI 45 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH---TCSCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH---cCCCCCCC
Confidence 45789999999999999999995 999999999994 55667763
No 4
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.61 E-value=1.3e-16 Score=110.05 Aligned_cols=41 Identities=46% Similarity=0.913 Sum_probs=35.9
Q ss_pred cccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCC
Q 024757 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAS 209 (263)
Q Consensus 165 r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~ 209 (263)
+.|++|++++||+||+||.|+ +|||||||||++ +...||++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLS 42 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHH---HSSCCCCC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHH---hCCCCCCC
Confidence 579999999999999999996 999999999995 44557764
No 5
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.53 E-value=2.7e-15 Score=121.67 Aligned_cols=54 Identities=30% Similarity=0.617 Sum_probs=47.5
Q ss_pred CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCCCccccccc
Q 024757 162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHS 219 (263)
Q Consensus 162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hs 219 (263)
.....|+||+++.||+||+||+| .+|||||||||+ ++...||+.+.++.|+.+.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~---~~~~~rp~~~~~~~i~~r~ 110 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK---LHNINRPLTMKKEGIQTRN 110 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCGGGCCSSCCCCC
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHH---HhCCCCCccccccchhhcc
Confidence 45689999999999999999999 999999999999 5556699999998887654
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.52 E-value=7.7e-16 Score=116.25 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=37.0
Q ss_pred CCCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCC
Q 024757 162 GGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSP 211 (263)
Q Consensus 162 ~~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~sp 211 (263)
.....|+||++++||+||+|+.+..+|||||||||+ ++..+||+.+.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~---~~~~~RP~~~~ 52 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVTAV 52 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHH---HHHSCCCTHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHH---HhCCCCCcccc
Confidence 455789999999999999954444599999999999 45567887543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.27 E-value=8.8e-13 Score=106.90 Aligned_cols=45 Identities=40% Similarity=0.821 Sum_probs=37.5
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCCCCCCC
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSP 211 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~RP~~sp 211 (263)
..+.|.||+++.||+||+|+.| .+|||||||||+ ++...||+..+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K---l~G~nRP~~Kp 48 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK---MNGQNRPLIKP 48 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCCSSC
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh---hcccccccccc
Confidence 4588999999999999999999 899999999998 55566776544
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.41 E-value=2.4 Score=28.45 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCC--CCCCC
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLV--PEYRP 207 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~--p~~RP 207 (263)
...|.+|+.. ++-..-..| ...|..||+-|....+- |+||.
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 3569999873 333333345 79999999988754433 45654
No 9
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=67.74 E-value=2.6 Score=34.87 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=22.2
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhh
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRY 196 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~y 196 (263)
-..|..|+.+.|-+=+.+..- -.-|+|||-.-
T Consensus 103 yVlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 134 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKSW-YIVCLACGAQT 134 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCSTT-TSSCCC-----
T ss_pred eeECCCCCCcCcEEEEeCCeE-EEEecCCCCCC
Confidence 368999999999999875443 67899999653
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=66.12 E-value=2.8 Score=35.13 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=25.1
Q ss_pred cccccCCCCCCCccccCCCCCccccchhhhhh
Q 024757 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRY 196 (263)
Q Consensus 165 r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~y 196 (263)
..|..|+.+.|-+=+.+..- -.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 57999999999999865433 57899999654
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=65.07 E-value=3.8 Score=28.89 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=28.4
Q ss_pred cccccCCCCCCCccccCCCCCccccchhhhhhhcCCC--CCCCCCC
Q 024757 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL--VPEYRPA 208 (263)
Q Consensus 165 r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl--~p~~RP~ 208 (263)
..|..|+... .-..-..| .+.|..||+-+.-..+ -|+||--
T Consensus 12 ~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp CSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCS
T ss_pred ccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCccccc
Confidence 4799998754 44444556 8999999999875332 3567753
No 12
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=61.35 E-value=2.7 Score=34.74 Aligned_cols=30 Identities=30% Similarity=0.665 Sum_probs=24.5
Q ss_pred cccccCCCCCCCccccCCCCCccccchhhhh
Q 024757 165 RRCTHCASEKTPQWRTGPLGPKTLCNACGVR 195 (263)
Q Consensus 165 r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~ 195 (263)
..|..|+.+.|-+=+.+..- -.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 57999999999999865433 5789999964
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=59.15 E-value=1.1 Score=29.16 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=22.9
Q ss_pred ccccCCCCCCCccccCCCCCccccchhhhhhh
Q 024757 166 RCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 166 ~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk 197 (263)
.|..|+.+.|-+=+++..- -.-|+|||-...
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCccc
Confidence 4999999999988854222 356999997543
No 14
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=57.47 E-value=7.3 Score=35.52 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=27.2
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhhcCCCC--CCCCC
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLV--PEYRP 207 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~--p~~RP 207 (263)
...|.+|+...+-.-..-..| .++|..||+=..-..+. ++||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCccccc
Confidence 457999988643233344466 88999999877543332 45654
No 15
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=53.64 E-value=5.6 Score=28.60 Aligned_cols=37 Identities=30% Similarity=0.647 Sum_probs=25.8
Q ss_pred cCCCCCccccchhhhhhhcCCCCCCCCCCCCCCcccccccccchhhHHHH
Q 024757 180 TGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELR 229 (263)
Q Consensus 180 rGP~G~~~LCNACGl~yk~grl~p~~RP~~spt~~~~~hsns~rkv~~~r 229 (263)
.+|.||++-|.-||+.|.. ...++.|-.+...+.+.|
T Consensus 7 ~~~~~P~~eC~lC~vkYs~-------------r~slqDHIFs~qHI~~vk 43 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSA-------------RLSIRDHIFSKQHISKVR 43 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCS-------------SSCHHHHHTSHHHHHHHH
T ss_pred CCCCCCCccccccCccccc-------------ccchhhhhccHHHHHHHH
Confidence 5789999999999999972 234566655555554444
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.80 E-value=11 Score=31.01 Aligned_cols=50 Identities=16% Similarity=0.519 Sum_probs=38.9
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCcc
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTFV 214 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~~ 214 (263)
+.+.|..|+.. -|.|-.=..| -.+|-.|.-..+. |..+-..|.+.+.+..
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~w~ 78 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQWT 78 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSCCC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCCCC
Confidence 45789999986 5999988889 8999999877776 5555677777766543
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=49.99 E-value=3 Score=28.79 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=25.2
Q ss_pred CcccccCCCCC----CCccccCCCCC--ccccchhhhhhh
Q 024757 164 VRRCTHCASEK----TPQWRTGPLGP--KTLCNACGVRYK 197 (263)
Q Consensus 164 ~r~C~~Cgt~~----TP~WRrGP~G~--~~LCNACGl~yk 197 (263)
...|.+||-.. +-|||...++. -+.|..||-.|+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 35799999754 34788776663 369999998886
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=49.26 E-value=7.7 Score=31.96 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=37.7
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCcc
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTFV 214 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~~ 214 (263)
+.+.|..|+... |.|-.=..| -.+|-.|.-..+. |..+-..|.+.+.+..
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~w~ 85 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDKFT 85 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSCCC
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCcCC
Confidence 347899999875 999998899 8999999887775 4444456666665443
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=46.03 E-value=9 Score=31.29 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=37.6
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCc
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTF 213 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~ 213 (263)
+.+.|..|+... |.|-.=..| -.+|-.|.-..+. |..+-..|.+.+.+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~hiS~VkSl~ld~w 75 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQW 75 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCCCCCceeeccccCC
Confidence 458999999875 999998899 8999999887775 554555666666543
No 20
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=40.58 E-value=8.7 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.599 Sum_probs=25.8
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhh
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACG 193 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACG 193 (263)
..+.|..||..-+.....|..+....|-.||
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred CcccCchhCCccccccccCCCCcceECCCCC
Confidence 3578999999998877777777778999999
No 21
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=40.30 E-value=4.7 Score=34.55 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=24.6
Q ss_pred cccccCCCCCCCccc--cCCCCCccccchhhhhhh
Q 024757 165 RRCTHCASEKTPQWR--TGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 165 r~C~~Cgt~~TP~WR--rGP~G~~~LCNACGl~yk 197 (263)
..|..|+.+.|-+-+ .+..- -.-|+|||-.--
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCCccc
Confidence 579999999999988 33322 467999997654
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.55 E-value=18 Score=30.22 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=37.5
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCC
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPT 212 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt 212 (263)
+.+.|..|+.. -|.|-.=..| -.+|-.|.-..+. |..+-..|.+.+.+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD~ 76 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELDS 76 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSCC
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccCC
Confidence 45799999975 6999998899 8999999887776 55555667776653
No 23
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=39.37 E-value=13 Score=31.19 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=36.9
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCcc
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTFV 214 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~~ 214 (263)
+.+.|..|+... |.|-.=..| -.||-.|.-..+. |.-+...|.+.+.++.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD~W~ 87 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMDKWK 87 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC--CC
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCccccccccCCC
Confidence 357899999875 999998889 9999999877775 5445556666665443
No 24
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.13 E-value=7 Score=33.03 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=24.3
Q ss_pred cccccCCCCCCCccc--cCCCCCccccchhhhhhh
Q 024757 165 RRCTHCASEKTPQWR--TGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 165 r~C~~Cgt~~TP~WR--rGP~G~~~LCNACGl~yk 197 (263)
..|..|+.+.|-+-+ ++..- -.-|+|||-..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~-~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTI-GNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEE-EEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccCCCCCCc
Confidence 579999999999986 32222 467999997654
No 25
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=37.04 E-value=16 Score=31.72 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCC
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASS 210 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~s 210 (263)
...|..|+... |.|-.-..| ..+|-.|.-..+. |.-+...|.+.+
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~~is~v~sl~l 87 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGVRFSRMQSLTL 87 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEETTT
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCCCcccccccCc
Confidence 47899999965 999999999 9999999655544 444444455444
No 26
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=36.80 E-value=16 Score=25.92 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=35.1
Q ss_pred CCCCccccc--CCCCCCCccccCCCCCccccchhhhhhhcCCCCCCCC
Q 024757 161 EGGVRRCTH--CASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYR 206 (263)
Q Consensus 161 ~~~~r~C~~--Cgt~~TP~WRrGP~G~~~LCNACGl~yk~grl~p~~R 206 (263)
.....+|.. |++---|.++-...|..-.||-|+.+-. +.+.|.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~---~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ---FPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE---CCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC---CCHHHh
Confidence 456689998 9999999998887787889999998776 555564
No 27
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.39 E-value=13 Score=26.59 Aligned_cols=24 Identities=25% Similarity=0.811 Sum_probs=17.9
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhh
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVR 195 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~ 195 (263)
....|.+||...- ++.+|-.||.|
T Consensus 29 ~l~~c~~cG~~~~---------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGKKL---------SHHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCEEC---------TTBCCTTTCBS
T ss_pred CceECCCCCCEeC---------CceEcCCCCcC
Confidence 3468999997633 37899999943
No 28
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=33.92 E-value=14 Score=30.83 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=36.6
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCC
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSP 211 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~sp 211 (263)
+.+.|..|+.. -|.|-.=..| -.+|-.|.-..+. |.-+...|.+.+.
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD 83 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELD 83 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSC
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccC
Confidence 45799999986 4999988889 8999999887776 5555566666554
No 29
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=32.25 E-value=22 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.503 Sum_probs=35.7
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCc
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTF 213 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~ 213 (263)
+.+.|..|+.. -|.|-.=..| -.+|-.|.-..+. |. +-..|.+.+.+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~-~s~VrSl~ld~w 72 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNP-PHRVKSISMTTF 72 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSS-CCCEEETTTCCC
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCC-cceeeecCCCCC
Confidence 35789999986 6999998899 8999999877775 33 445555555443
No 30
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.39 E-value=13 Score=25.45 Aligned_cols=36 Identities=25% Similarity=0.559 Sum_probs=25.3
Q ss_pred CCCcccccCCCCCCCcc----ccCCCCCc--cccchhhhhhh
Q 024757 162 GGVRRCTHCASEKTPQW----RTGPLGPK--TLCNACGVRYK 197 (263)
Q Consensus 162 ~~~r~C~~Cgt~~TP~W----RrGP~G~~--~LCNACGl~yk 197 (263)
.....|..|+-.+.--| |...++.- +.|..||-+|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 34467999998775433 66666532 58999998886
No 31
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=28.12 E-value=25 Score=29.91 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=37.0
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhhc-CCCCCCCCCCCCCCcc
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKS-GRLVPEYRPASSPTFV 214 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk~-grl~p~~RP~~spt~~ 214 (263)
.+.|..|+.. -|.|-.=..| -.||-.|.-..+. |..+-..|.+.+.++.
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~LG~hISkVKSltLD~Wt 71 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRSLGVHISIVRSIKMDIFT 71 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHTCTTTCCEEETTTCCCC
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcCCCCCCCeeeeccccCcC
Confidence 4789999986 6999998889 9999999766665 4444556666665543
No 32
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=27.92 E-value=21 Score=30.23 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=24.4
Q ss_pred CCCcccccCCCCCCC----ccccCCCCC--ccccchhhhhhh
Q 024757 162 GGVRRCTHCASEKTP----QWRTGPLGP--KTLCNACGVRYK 197 (263)
Q Consensus 162 ~~~r~C~~Cgt~~TP----~WRrGP~G~--~~LCNACGl~yk 197 (263)
+....|..|+-...- |=|...++. -+.|..||-+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 345689999976632 225554442 368999999986
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=25.05 E-value=17 Score=33.30 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhh
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk 197 (263)
...|..|+...+-.--+-..| .++|..||+=+.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCCcc
Confidence 346999987444343333456 788999998665
No 34
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=23.99 E-value=25 Score=32.00 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCcc----ccCCCCC--ccccchhhhhhh
Q 024757 164 VRRCTHCASEKTPQW----RTGPLGP--KTLCNACGVRYK 197 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~W----RrGP~G~--~~LCNACGl~yk 197 (263)
...|..|+-...-.| |...+|- -+.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998776544 5565553 369999999986
No 35
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=22.55 E-value=38 Score=30.76 Aligned_cols=33 Identities=33% Similarity=0.783 Sum_probs=27.3
Q ss_pred CCcccccCCCCCCCccccCCCCCccccchhhhhhh
Q 024757 163 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 163 ~~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk 197 (263)
+.+.|..|+.. -|.|-.=..| -.+|-.|.--.+
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr 76 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCSGIHR 76 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHh
Confidence 46899999985 6999998889 999999964444
No 36
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=22.53 E-value=32 Score=27.26 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCCCccccccccCCCCcc
Q 024757 3 IYGLPSNNTTTQDLFRIDDLLDFSNDE 29 (263)
Q Consensus 3 ~~~~~~~~~~~~d~f~vdDLLdfsn~d 29 (263)
+|.-.... .+++.-||+|||++.++
T Consensus 42 Ly~~~e~e--~p~eIDiDeLLDl~sde 66 (99)
T 1j2m_A 42 LYRGREAD--MPDEVNIDELLELESEE 66 (99)
T ss_dssp SCTTSSCS--CCSSCCSHHHHCCTTTT
T ss_pred HhcCcccc--CCcccCHHHHhcCCcHH
Confidence 45544332 45699999999998775
No 37
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=21.83 E-value=20 Score=29.45 Aligned_cols=16 Identities=44% Similarity=1.024 Sum_probs=12.9
Q ss_pred ccccchh-hhhhhhhcc
Q 024757 78 DDVAELE-WLSQFVDDS 93 (263)
Q Consensus 78 dd~a~lE-Wls~fveds 93 (263)
=|||+|| ||-.|++|=
T Consensus 95 ldvaelqAWlErFIdDi 111 (133)
T 2bsj_A 95 LDIDEMQAWLERFIDDI 111 (133)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 4778886 999999873
No 38
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.54 E-value=23 Score=25.32 Aligned_cols=24 Identities=38% Similarity=0.988 Sum_probs=18.1
Q ss_pred CcccccCCCCCCCccccCCCCCccccchhhhhhh
Q 024757 164 VRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 197 (263)
Q Consensus 164 ~r~C~~Cgt~~TP~WRrGP~G~~~LCNACGl~yk 197 (263)
.-.|.+||...- ++.+|-.|| +|+
T Consensus 30 l~~c~~cGe~~~---------~H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 30 LVPCPECKAMKP---------PHTVCPECG-YYA 53 (60)
T ss_dssp CEECTTTCCEEC---------TTSCCTTTC-EET
T ss_pred eeECCCCCCeec---------ceEEcCCCC-cCC
Confidence 468999998543 378999999 444
Done!