BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024758
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2
Length = 1032
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 74 MRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENR------EALIELSGKVRD--- 124
+ LPSL+ + VA T+EG+ L + + + NR + I G +
Sbjct: 381 VSLPSLKLNLVANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVT 440
Query: 125 ----EWMDTDF---TTWIGANRLYPGVSDALKLASS-RIYIVTSNQSRFVETLLREL--- 173
E D DF + ++ A + + S L SS IYI TS QS+FV TL EL
Sbjct: 441 GALFEREDEDFGPASFFVSAGQRWAASSVGLFAGSSNNIYIATS-QSQFVNTLDSELFQS 499
Query: 174 AGVTITPDRLYGLG 187
A ++ + R YGLG
Sbjct: 500 ARLSASSVRYYGLG 513
>sp|Q9FHN6|SKS2_ARATH Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana
GN=SKS2 PE=1 SV=1
Length = 592
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 43 LEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLRKSSVAEGLTVEGI--------- 93
+ DW LR ++++G + + +L+ + P SSV +G+ E +
Sbjct: 165 IGDWYTQNHTALRRILDSGKELGMPDGVLINGKGPFKYNSSVPDGIEHETVNVDPGKTYR 224
Query: 94 --LENWLKIKPVIMEEWSENREALIELSGKVRDEWMDTDFTTWIGANRLYPGVSDALKLA 151
+ N + I + ++ LIE G+ + TDF +G + + D + A
Sbjct: 225 IRVHN-VGISTSLNFRIQNHKLLLIETEGRYTSQMNFTDFDVHVGQSYSFLVTMD--QNA 281
Query: 152 SSRIYIVTSNQSRFV-ETLLRELAGVTI 178
+S YIV S +RFV ET+ + + GV I
Sbjct: 282 TSDYYIVAS--ARFVNETVWQRVTGVGI 307
>sp|D3G0V0|BIOW_BACPE 6-carboxyhexanoate--CoA ligase OS=Bacillus pseudofirmus (strain
OF4) GN=bioW PE=3 SV=1
Length = 273
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 43/179 (24%)
Query: 82 SSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKV------------------- 122
SSVA+G L IKP ++EE L EL G +
Sbjct: 86 SSVADGQATARSLLTEAGIKPQVIEEAYYVLSELTELRGALFIDAATGQRLDDPIKNGVR 145
Query: 123 --RDEWMDTDFTTWIGANRLYPGV--SDALKLASSRIYIVTSNQSRFVETLLRELAGVTI 178
R +W DF+ W+ ++L P + +AL LA+ VT + + E +
Sbjct: 146 VTRMDWPLDDFSCWLNEHQLSPNIRMKEALALATK----VTQHPATIAELCWSD------ 195
Query: 179 TPDRLYGLGTGPKVNV--LKQLQKKPEHQGLRLHFVEDRLATLKNVIKEPELDGWNLYL 235
PD + G K + QL++ E +G R+ FV+ +KN LD + YL
Sbjct: 196 DPDYITGYVASQKFGYQRISQLKELGEEKGCRIFFVDQ--TKMKN------LDAYINYL 246
>sp|P96680|YDFC_BACSU Uncharacterized transporter YdfC OS=Bacillus subtilis (strain
168) GN=ydfC PE=3 SV=1
Length = 306
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 32 WPSLFDGVDSALEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLR 80
W S F G+ + LE + + + R ++ G LLL +L +MRLP L+
Sbjct: 19 WASAFPGIRAGLEGYTPEHLALFRLLI--GSMALLLFAVLTQMRLPDLK 65
>sp|Q07V09|PROA_RHOP5 Gamma-glutamyl phosphate reductase OS=Rhodopseudomonas palustris
(strain BisA53) GN=proA PE=3 SV=1
Length = 430
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 38 GVDSALEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLRKSSVAEGLTVEGILENW 97
G D A+ IV RP V +TLL+ R E L L + G V G E
Sbjct: 249 GADLAMAKAIVLNAKMRRPGVCGAAETLLVDRAAAEADLAPLLSVLIESGCEVRGDAEMQ 308
Query: 98 ---LKIKPVIMEEWS 109
++KPV E+WS
Sbjct: 309 RVDTRVKPVAEEDWS 323
>sp|Q92HB4|RSMH_RICCN Ribosomal RNA small subunit methyltransferase H OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rsmH PE=3
SV=1
Length = 307
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 193 NVLKQLQKKPEHQGLRLHFVEDRLATLKNVIKEPELDGWNLYLG 236
NV+K+ ++ +H G R FVE A +KE + DG L LG
Sbjct: 55 NVIKRAEEIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLG 98
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 70 LLLEMRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 126
L++E R ++ L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,649,739
Number of Sequences: 539616
Number of extensions: 3909042
Number of successful extensions: 10670
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10667
Number of HSP's gapped (non-prelim): 13
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)