BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024759
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AEP|A Chain A, Molecular Structure Of An Apolipoprotein Determined At
           2.5- Angstroms Resolution
          Length = 161

 Score = 30.4 bits (67), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 131 NGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190
           N F T+I +VT  +   A+    ++ E L  + R L         +  ++   N  +S L
Sbjct: 46  NAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSAL 105

Query: 191 KNVGYHSWEKLILR 204
            NVG H W+ +  +
Sbjct: 106 TNVG-HQWQDIATK 118


>pdb|1LS4|A Chain A, Nmr Structure Of Apolipophorin-Iii From Locusta Migratoria
          Length = 180

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 131 NGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190
           N F T+I +VT  +   A+    ++ E L  + R L         +  ++   N  +S L
Sbjct: 65  NAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSAL 124

Query: 191 KNVGYHSWEKLILR 204
            NVG H W+ +  +
Sbjct: 125 TNVG-HQWQDIATK 137


>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
 pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
          Length = 268

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 137 IFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYH 196
           I D+  +I    + ++P +PE ++  ++L  LG KI+ ++     SR      L++ G  
Sbjct: 12  IIDIDGVI---GKSVTP-IPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67

Query: 197 SWEKLILRET 206
             E  IL  T
Sbjct: 68  VGEDEILVAT 77


>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
           Onnurineus
 pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
           Onnurineus
 pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
           Onnurineus
 pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
           Onnurineus
          Length = 201

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR 215
           PE+ +L   L   GFK+VL++G  E          K +G        + E G++     R
Sbjct: 82  PEARELVETLREKGFKVVLISGSFEE----VLEPFKELGDEFMANRAIFEDGKFQGIRLR 137

Query: 216 AHKSAERRKLVESGYRIIGNMGDQWCD 242
                E  K    G+  I  MGD + D
Sbjct: 138 FRDKGEFLKRFRDGF--ILAMGDGYAD 162


>pdb|3P5S|A Chain A, Structural Insights Into The Catalytic Mechanism Of Cd38:
           Evidence For A Conformationally Flexible Covalent
           Enzyme-substrate Complex
 pdb|3P5S|B Chain B, Structural Insights Into The Catalytic Mechanism Of Cd38:
           Evidence For A Conformationally Flexible Covalent
           Enzyme-substrate Complex
          Length = 278

 Score = 27.3 bits (59), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 209 WNDTTQRAHKSAERRKLVESGYRIIGNMGD--QWC 241
           W+ T + AH+ A+RR+L+     ++G + D  +WC
Sbjct: 118 WSKTKELAHEYAKRRRLMTLEDTLLGYLADGLRWC 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,303,410
Number of Sequences: 62578
Number of extensions: 347938
Number of successful extensions: 785
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 10
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)