Query 024759
Match_columns 263
No_of_seqs 273 out of 816
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 6E-81 1.3E-85 553.8 21.3 218 45-263 12-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 9.1E-80 2E-84 555.4 20.9 246 9-261 3-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 4.3E-62 9.3E-67 434.3 3.7 213 46-262 12-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 1.2E-38 2.5E-43 289.4 18.7 179 73-260 37-237 (266)
5 COG2503 Predicted secreted aci 100.0 6.7E-34 1.4E-38 251.3 14.1 172 76-260 44-241 (274)
6 PRK11009 aphA acid phosphatase 99.9 1.7E-22 3.6E-27 181.0 12.3 141 110-260 63-218 (237)
7 TIGR01672 AphA HAD superfamily 99.7 1.2E-17 2.6E-22 149.7 11.4 132 111-253 64-208 (237)
8 TIGR01689 EcbF-BcbF capsule bi 99.4 2.6E-12 5.6E-17 104.9 9.9 75 111-206 2-88 (126)
9 smart00775 LNS2 LNS2 domain. T 99.4 6.4E-12 1.4E-16 105.9 11.7 117 112-244 1-133 (157)
10 COG3700 AphA Acid phosphatase 99.4 3.1E-12 6.8E-17 109.6 8.9 141 108-260 61-218 (237)
11 PHA02530 pseT polynucleotide k 99.3 1.3E-11 2.8E-16 112.7 10.7 130 108-253 156-293 (300)
12 PF08235 LNS2: LNS2 (Lipin/Ned 99.3 2.3E-11 4.9E-16 102.8 9.8 126 112-254 1-147 (157)
13 COG2179 Predicted hydrolase of 99.1 3E-10 6.6E-15 96.3 10.2 108 107-254 25-136 (175)
14 cd01427 HAD_like Haloacid deha 99.1 1.3E-10 2.9E-15 90.7 6.6 120 112-253 1-137 (139)
15 COG0546 Gph Predicted phosphat 98.9 6.2E-09 1.4E-13 91.6 9.4 90 152-247 88-179 (220)
16 TIGR01662 HAD-SF-IIIA HAD-supe 98.8 8.6E-09 1.9E-13 83.0 7.2 121 111-253 1-128 (132)
17 PRK14988 GMP/IMP nucleotidase; 98.8 2.4E-08 5.1E-13 88.3 9.4 100 152-258 92-196 (224)
18 PRK13288 pyrophosphatase PpaX; 98.8 2.5E-08 5.5E-13 86.5 9.5 89 151-246 80-171 (214)
19 TIGR01428 HAD_type_II 2-haloal 98.8 3.6E-08 7.9E-13 84.4 10.1 101 151-256 90-192 (198)
20 TIGR03351 PhnX-like phosphonat 98.8 5.2E-08 1.1E-12 84.7 10.5 98 151-255 85-190 (220)
21 TIGR01656 Histidinol-ppas hist 98.8 2.7E-08 5.8E-13 82.3 8.2 127 111-257 1-146 (147)
22 PRK13226 phosphoglycolate phos 98.8 4.9E-08 1.1E-12 86.2 10.4 98 151-253 93-192 (229)
23 TIGR02253 CTE7 HAD superfamily 98.8 5.8E-08 1.3E-12 84.2 10.4 99 152-257 93-196 (221)
24 PRK13225 phosphoglycolate phos 98.7 5.2E-08 1.1E-12 89.0 10.0 96 151-255 140-238 (273)
25 TIGR01990 bPGM beta-phosphoglu 98.7 3.8E-08 8.2E-13 82.8 8.4 94 152-254 86-183 (185)
26 TIGR01422 phosphonatase phosph 98.7 7.2E-08 1.6E-12 86.0 10.6 101 151-257 97-202 (253)
27 TIGR01548 HAD-SF-IA-hyp1 haloa 98.7 5.1E-08 1.1E-12 83.8 9.1 88 154-247 107-195 (197)
28 PLN02770 haloacid dehalogenase 98.7 8.8E-08 1.9E-12 85.8 10.5 99 151-255 106-207 (248)
29 PRK10826 2-deoxyglucose-6-phos 98.7 1.8E-07 3.9E-12 81.7 12.2 101 151-258 90-194 (222)
30 TIGR01454 AHBA_synth_RP 3-amin 98.7 7.3E-08 1.6E-12 83.1 9.2 95 151-252 73-171 (205)
31 PLN02575 haloacid dehalogenase 98.7 1.3E-07 2.9E-12 90.3 11.6 99 151-256 214-316 (381)
32 TIGR01449 PGP_bact 2-phosphogl 98.7 7.2E-08 1.6E-12 83.0 8.0 95 152-253 84-182 (213)
33 PRK13223 phosphoglycolate phos 98.7 2.4E-07 5.1E-12 84.3 11.6 98 152-256 100-201 (272)
34 PLN03243 haloacid dehalogenase 98.7 2.4E-07 5.3E-12 84.0 11.6 99 151-256 107-209 (260)
35 PRK11587 putative phosphatase; 98.7 1.9E-07 4.1E-12 81.6 10.2 100 150-256 80-182 (218)
36 PRK13222 phosphoglycolate phos 98.6 3E-07 6.4E-12 79.8 11.2 91 151-246 91-182 (226)
37 PF13344 Hydrolase_6: Haloacid 98.6 2.2E-07 4.7E-12 72.8 8.8 58 113-197 1-58 (101)
38 PRK13478 phosphonoacetaldehyde 98.6 3.9E-07 8.4E-12 82.2 11.0 98 151-255 99-202 (267)
39 TIGR02009 PGMB-YQAB-SF beta-ph 98.6 2.4E-07 5.2E-12 77.9 8.4 94 151-253 86-183 (185)
40 TIGR01549 HAD-SF-IA-v1 haloaci 98.6 1.3E-07 2.7E-12 77.7 6.3 126 112-247 1-151 (154)
41 PRK09449 dUMP phosphatase; Pro 98.6 3.9E-07 8.4E-12 79.4 9.6 96 152-256 94-196 (224)
42 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 7E-07 1.5E-11 75.9 10.7 104 151-258 78-192 (201)
43 TIGR01993 Pyr-5-nucltdase pyri 98.5 4.4E-07 9.6E-12 76.9 9.1 94 152-253 83-182 (184)
44 TIGR01670 YrbI-phosphatas 3-de 98.5 1.7E-07 3.6E-12 78.4 6.4 107 111-246 2-108 (154)
45 PF09419 PGP_phosphatase: Mito 98.5 4.8E-07 1E-11 77.4 8.8 115 106-255 37-163 (168)
46 PLN02954 phosphoserine phospha 98.5 1.5E-06 3.3E-11 75.7 12.1 137 109-248 11-187 (224)
47 PRK06698 bifunctional 5'-methy 98.5 8E-07 1.7E-11 86.5 11.2 97 151-255 328-426 (459)
48 TIGR01489 DKMTPPase-SF 2,3-dik 98.5 2.2E-06 4.8E-11 71.9 12.4 98 151-251 70-183 (188)
49 PHA02597 30.2 hypothetical pro 98.5 7.2E-07 1.6E-11 76.4 9.6 138 110-255 2-173 (197)
50 PLN02779 haloacid dehalogenase 98.5 1.1E-06 2.3E-11 80.7 11.2 98 152-257 143-247 (286)
51 TIGR00213 GmhB_yaeD D,D-heptos 98.5 2.5E-07 5.3E-12 78.6 6.3 120 111-252 2-146 (176)
52 PF06941 NT5C: 5' nucleotidase 98.5 2.1E-07 4.6E-12 80.1 6.0 125 113-258 5-164 (191)
53 PF13419 HAD_2: Haloacid dehal 98.5 1.2E-07 2.5E-12 77.6 3.8 98 150-253 74-174 (176)
54 TIGR01261 hisB_Nterm histidino 98.5 5.4E-07 1.2E-11 76.3 7.8 123 111-255 2-146 (161)
55 PLN02940 riboflavin kinase 98.5 9.4E-07 2E-11 84.4 10.3 102 151-257 91-195 (382)
56 TIGR01509 HAD-SF-IA-v3 haloaci 98.5 9.4E-07 2E-11 73.8 8.9 96 152-253 84-181 (183)
57 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.5 9.1E-07 2E-11 79.9 9.4 64 111-197 2-65 (257)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 98.4 5.3E-07 1.2E-11 76.5 6.8 118 110-247 13-152 (166)
59 PRK08942 D,D-heptose 1,7-bisph 98.4 7.9E-07 1.7E-11 75.7 7.7 124 110-253 3-144 (181)
60 COG0637 Predicted phosphatase/ 98.4 7.2E-07 1.6E-11 78.9 7.6 103 150-258 83-188 (221)
61 PRK13582 thrH phosphoserine ph 98.4 1.3E-06 2.8E-11 75.0 8.9 89 151-244 66-158 (205)
62 TIGR02252 DREG-2 REG-2-like, H 98.4 1E-06 2.2E-11 75.6 8.0 92 153-252 105-201 (203)
63 PRK09456 ?-D-glucose-1-phospha 98.4 1.1E-06 2.3E-11 75.8 7.9 101 152-258 83-187 (199)
64 PRK10444 UMP phosphatase; Prov 98.4 1.9E-06 4.1E-11 77.7 9.7 66 111-203 2-67 (248)
65 PLN02645 phosphoglycolate phos 98.4 8.2E-07 1.8E-11 82.3 7.3 63 109-198 27-89 (311)
66 TIGR00338 serB phosphoserine p 98.4 1.8E-06 4E-11 74.9 8.8 44 151-197 83-126 (219)
67 PRK09484 3-deoxy-D-manno-octul 98.4 8.9E-07 1.9E-11 76.0 6.7 108 109-247 20-129 (183)
68 PRK09552 mtnX 2-hydroxy-3-keto 98.3 3.3E-06 7.2E-11 73.9 8.7 91 151-247 72-177 (219)
69 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 3E-06 6.5E-11 68.7 7.7 67 111-194 1-68 (128)
70 PRK06769 hypothetical protein; 98.3 3.5E-06 7.7E-11 71.7 8.1 114 109-246 3-126 (173)
71 TIGR01452 PGP_euk phosphoglyco 98.3 2E-06 4.4E-11 78.3 7.0 61 110-197 2-62 (279)
72 TIGR02247 HAD-1A3-hyp Epoxide 98.2 4.9E-06 1.1E-10 71.9 8.6 103 151-257 92-197 (211)
73 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.2 6.7E-06 1.5E-10 73.3 9.7 101 108-244 6-109 (242)
74 PRK10725 fructose-1-P/6-phosph 98.2 9.1E-06 2E-10 68.7 9.5 95 152-255 87-185 (188)
75 TIGR02254 YjjG/YfnB HAD superf 98.2 6.7E-06 1.4E-10 71.0 8.8 87 152-246 96-187 (224)
76 TIGR01668 YqeG_hyp_ppase HAD s 98.2 7E-06 1.5E-10 69.7 8.6 110 108-254 23-134 (170)
77 TIGR02726 phenyl_P_delta pheny 98.2 4.6E-06 1E-10 71.3 7.5 117 110-257 7-125 (169)
78 PRK10748 flavin mononucleotide 98.2 7.7E-06 1.7E-10 72.7 9.2 91 152-255 112-207 (238)
79 PRK10530 pyridoxal phosphate ( 98.2 6.1E-06 1.3E-10 73.7 8.1 59 110-197 3-61 (272)
80 TIGR01488 HAD-SF-IB Haloacid D 98.2 1.5E-05 3.3E-10 66.4 9.9 92 151-245 71-173 (177)
81 PRK15126 thiamin pyrimidine py 98.2 7.2E-06 1.6E-10 73.9 8.3 59 110-197 2-60 (272)
82 PRK01158 phosphoglycolate phos 98.2 6.9E-06 1.5E-10 71.7 7.9 59 110-197 3-61 (230)
83 PRK10976 putative hydrolase; P 98.1 7.7E-06 1.7E-10 73.2 8.0 59 110-197 2-60 (266)
84 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.1 2.2E-05 4.7E-10 67.2 9.9 104 152-258 86-200 (202)
85 TIGR02463 MPGP_rel mannosyl-3- 98.1 1E-05 2.2E-10 70.5 7.7 55 113-196 2-56 (221)
86 PRK10513 sugar phosphate phosp 98.1 1E-05 2.2E-10 72.6 7.8 58 110-196 3-60 (270)
87 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.1 8.1E-06 1.8E-10 73.4 7.1 60 111-197 2-61 (249)
88 PRK05446 imidazole glycerol-ph 98.1 1.6E-05 3.4E-10 75.6 9.1 129 110-259 2-150 (354)
89 COG1011 Predicted hydrolase (H 98.1 3.1E-05 6.7E-10 67.1 10.3 97 152-257 98-200 (229)
90 PLN02919 haloacid dehalogenase 98.1 2.4E-05 5.2E-10 83.6 11.4 100 153-257 161-263 (1057)
91 PRK10563 6-phosphogluconate ph 98.1 1.1E-05 2.3E-10 70.3 7.3 94 151-254 86-184 (221)
92 TIGR01684 viral_ppase viral ph 98.1 1.8E-05 3.9E-10 73.2 8.9 72 108-206 124-196 (301)
93 PF08282 Hydrolase_3: haloacid 98.1 1.3E-05 2.8E-10 69.3 7.5 55 113-196 1-55 (254)
94 TIGR01685 MDP-1 magnesium-depe 98.1 7.4E-06 1.6E-10 70.4 5.8 139 110-257 2-158 (174)
95 PRK00192 mannosyl-3-phosphogly 98.0 1.5E-05 3.3E-10 72.1 8.1 59 110-197 4-62 (273)
96 smart00577 CPDc catalytic doma 98.0 1.1E-05 2.3E-10 66.9 6.5 128 110-247 2-132 (148)
97 COG0561 Cof Predicted hydrolas 98.0 9.3E-06 2E-10 72.7 6.5 58 110-196 3-60 (264)
98 TIGR01487 SPP-like sucrose-pho 98.0 1.3E-05 2.7E-10 69.8 7.1 57 111-196 2-58 (215)
99 TIGR01486 HAD-SF-IIB-MPGP mann 98.0 1.6E-05 3.6E-10 71.1 7.7 56 113-197 2-57 (256)
100 PRK03669 mannosyl-3-phosphogly 98.0 2.2E-05 4.8E-10 71.0 8.3 60 108-196 5-64 (271)
101 TIGR00099 Cof-subfamily Cof su 98.0 1.9E-05 4.2E-10 70.4 7.7 56 112-196 1-56 (256)
102 TIGR02461 osmo_MPG_phos mannos 98.0 1.9E-05 4.1E-10 70.1 7.5 55 112-196 1-55 (225)
103 TIGR01482 SPP-subfamily Sucros 98.0 1.5E-05 3.4E-10 69.1 6.1 55 113-196 1-55 (225)
104 COG1778 Low specificity phosph 97.9 1.7E-05 3.6E-10 67.1 5.7 107 109-244 7-113 (170)
105 PTZ00174 phosphomannomutase; P 97.9 1.9E-05 4.1E-10 70.7 6.3 47 109-181 4-50 (247)
106 TIGR02137 HSK-PSP phosphoserin 97.9 0.00012 2.6E-09 64.2 10.3 89 152-245 67-159 (203)
107 COG0647 NagD Predicted sugar p 97.9 3.4E-05 7.4E-10 70.7 7.0 62 108-196 6-67 (269)
108 PHA03398 viral phosphatase sup 97.8 8.5E-05 1.8E-09 68.9 9.0 72 108-206 126-198 (303)
109 TIGR01663 PNK-3'Pase polynucle 97.8 5.2E-05 1.1E-09 75.5 8.0 118 108-245 166-299 (526)
110 PLN02887 hydrolase family prot 97.8 8.2E-05 1.8E-09 74.9 8.8 58 109-195 307-364 (580)
111 PRK12702 mannosyl-3-phosphogly 97.8 8.9E-05 1.9E-09 68.8 8.2 58 110-196 1-58 (302)
112 TIGR01484 HAD-SF-IIB HAD-super 97.8 4.3E-05 9.4E-10 65.6 5.9 45 113-182 2-46 (204)
113 PRK08238 hypothetical protein; 97.8 0.00021 4.5E-09 70.5 11.3 128 108-246 8-155 (479)
114 COG0560 SerB Phosphoserine pho 97.8 0.00025 5.5E-09 62.6 10.6 90 152-244 76-174 (212)
115 TIGR03333 salvage_mtnX 2-hydro 97.8 0.0001 2.2E-09 64.4 8.0 98 151-252 68-178 (214)
116 PF06888 Put_Phosphatase: Puta 97.8 0.00038 8.3E-09 62.6 11.6 131 112-246 2-185 (234)
117 TIGR01460 HAD-SF-IIA Haloacid 97.7 6.5E-05 1.4E-09 66.9 6.3 58 113-197 1-59 (236)
118 PRK11590 hypothetical protein; 97.7 0.00061 1.3E-08 59.5 12.4 104 152-258 94-205 (211)
119 TIGR01493 HAD-SF-IA-v2 Haloaci 97.7 3E-05 6.4E-10 64.9 3.7 85 151-247 88-173 (175)
120 KOG1615 Phosphoserine phosphat 97.7 0.00031 6.8E-09 61.5 10.1 141 109-252 15-195 (227)
121 PF12710 HAD: haloacid dehalog 97.7 0.00015 3.3E-09 60.9 7.2 85 156-244 92-189 (192)
122 COG5083 SMP2 Uncharacterized p 97.7 0.00015 3.3E-09 70.0 7.8 123 108-245 373-509 (580)
123 PRK11133 serB phosphoserine ph 97.6 0.0004 8.8E-09 65.1 10.5 94 151-247 179-281 (322)
124 TIGR01686 FkbH FkbH-like domai 97.6 0.00031 6.7E-09 65.4 9.3 114 110-247 3-120 (320)
125 PF11019 DUF2608: Protein of u 97.6 0.0002 4.4E-09 64.9 7.5 90 109-198 19-126 (252)
126 TIGR01456 CECR5 HAD-superfamil 97.6 0.00017 3.7E-09 67.3 6.8 59 112-197 2-65 (321)
127 COG4850 Uncharacterized conser 97.6 0.00045 9.7E-09 64.6 9.4 123 112-244 163-292 (373)
128 KOG2116 Protein involved in pl 97.6 0.00043 9.2E-09 69.7 9.8 128 111-255 531-679 (738)
129 PRK10187 trehalose-6-phosphate 97.5 0.00025 5.3E-09 64.5 6.9 61 110-194 14-75 (266)
130 KOG3040 Predicted sugar phosph 97.4 0.00077 1.7E-08 59.8 8.9 101 108-247 5-106 (262)
131 TIGR01485 SPP_plant-cyano sucr 97.4 0.00034 7.4E-09 62.4 6.8 60 112-197 3-62 (249)
132 PRK14502 bifunctional mannosyl 97.4 0.00036 7.7E-09 71.2 6.8 60 108-196 414-473 (694)
133 PLN02423 phosphomannomutase 97.4 0.00037 8E-09 62.6 6.0 45 109-180 5-50 (245)
134 COG0241 HisB Histidinol phosph 97.2 0.0015 3.2E-08 56.7 7.6 126 110-254 5-147 (181)
135 TIGR01545 YfhB_g-proteo haloac 97.2 0.0035 7.6E-08 55.1 10.0 87 153-244 94-189 (210)
136 TIGR02471 sucr_syn_bact_C sucr 97.1 0.0008 1.7E-08 59.4 5.4 54 112-196 1-54 (236)
137 TIGR02251 HIF-SF_euk Dullard-l 97.1 0.00091 2E-08 56.5 5.4 127 110-247 1-129 (162)
138 PLN03017 trehalose-phosphatase 97.1 0.0012 2.5E-08 63.1 6.7 64 96-181 96-160 (366)
139 KOG3085 Predicted hydrolase (H 97.0 0.0028 6E-08 57.2 7.6 102 153-260 113-217 (237)
140 TIGR02250 FCP1_euk FCP1-like p 97.0 0.0063 1.4E-07 51.3 9.3 121 107-246 3-143 (156)
141 KOG3120 Predicted haloacid deh 97.0 0.013 2.7E-07 52.6 11.4 135 108-245 11-197 (256)
142 TIGR01511 ATPase-IB1_Cu copper 96.9 0.0046 1E-07 62.1 9.1 80 151-246 403-482 (562)
143 COG1877 OtsB Trehalose-6-phosp 96.9 0.0017 3.7E-08 59.5 5.3 76 107-206 15-93 (266)
144 KOG2914 Predicted haloacid-hal 96.8 0.0056 1.2E-07 54.7 8.1 147 108-257 8-197 (222)
145 TIGR00685 T6PP trehalose-phosp 96.8 0.0027 5.8E-08 56.7 5.7 50 109-179 2-52 (244)
146 TIGR01525 ATPase-IB_hvy heavy 96.8 0.0052 1.1E-07 61.5 8.3 81 151-246 382-463 (556)
147 PF00702 Hydrolase: haloacid d 96.7 0.0018 4E-08 55.0 4.3 84 151-245 125-210 (215)
148 TIGR01512 ATPase-IB2_Cd heavy 96.7 0.0044 9.6E-08 61.8 7.4 81 151-246 360-441 (536)
149 PLN02811 hydrolase 96.7 0.0037 7.9E-08 54.6 6.0 104 151-257 76-185 (220)
150 KOG2882 p-Nitrophenyl phosphat 96.7 0.0037 8E-08 58.0 6.2 62 108-196 20-81 (306)
151 PLN02151 trehalose-phosphatase 96.7 0.0052 1.1E-07 58.5 7.2 64 96-181 83-147 (354)
152 PRK14501 putative bifunctional 96.5 0.0056 1.2E-07 63.2 6.7 53 108-181 490-543 (726)
153 PTZ00445 p36-lilke protein; Pr 96.5 0.0074 1.6E-07 53.7 6.3 165 74-258 11-207 (219)
154 TIGR01544 HAD-SF-IE haloacid d 96.4 0.032 6.9E-07 51.5 10.1 107 138-247 106-228 (277)
155 PLN02580 trehalose-phosphatase 96.3 0.011 2.4E-07 56.9 7.3 59 108-191 117-175 (384)
156 PF08645 PNK3P: Polynucleotide 96.3 0.0021 4.5E-08 54.3 1.7 110 111-242 1-130 (159)
157 TIGR01691 enolase-ppase 2,3-di 96.1 0.014 3E-07 51.9 6.3 105 143-255 83-195 (220)
158 COG2217 ZntA Cation transport 96.0 0.026 5.6E-07 58.4 8.7 79 151-244 535-613 (713)
159 TIGR01647 ATPase-IIIA_H plasma 96.0 0.02 4.4E-07 59.5 7.8 90 151-245 440-549 (755)
160 PF05152 DUF705: Protein of un 96.0 0.042 9.1E-07 50.8 9.0 72 108-205 120-191 (297)
161 PLN02205 alpha,alpha-trehalose 96.0 0.017 3.6E-07 61.0 7.1 57 108-190 594-651 (854)
162 PRK11033 zntA zinc/cadmium/mer 95.9 0.026 5.6E-07 58.6 8.2 78 151-245 566-643 (741)
163 TIGR01522 ATPase-IIA2_Ca golgi 95.9 0.043 9.3E-07 58.0 9.9 91 151-245 526-632 (884)
164 PLN02382 probable sucrose-phos 95.9 0.034 7.3E-07 53.9 8.4 52 108-182 7-58 (413)
165 PRK14010 potassium-transportin 95.9 0.03 6.6E-07 57.5 8.3 79 151-244 439-517 (673)
166 TIGR01517 ATPase-IIB_Ca plasma 95.9 0.029 6.3E-07 59.7 8.5 91 151-245 577-683 (941)
167 PF03031 NIF: NLI interacting 95.7 0.011 2.4E-07 48.8 3.8 114 111-245 1-121 (159)
168 PF05116 S6PP: Sucrose-6F-phos 95.7 0.0094 2E-07 53.6 3.5 64 110-202 2-65 (247)
169 TIGR01497 kdpB K+-transporting 95.7 0.051 1.1E-06 55.9 9.1 80 151-245 444-523 (675)
170 TIGR02245 HAD_IIID1 HAD-superf 95.5 0.026 5.7E-07 49.4 5.4 67 103-190 14-81 (195)
171 COG5663 Uncharacterized conser 95.5 0.018 4E-07 49.4 4.1 66 140-207 53-124 (194)
172 TIGR01106 ATPase-IIC_X-K sodiu 95.4 0.085 1.8E-06 56.6 9.9 90 151-245 566-698 (997)
173 TIGR01524 ATPase-IIIB_Mg magne 95.4 0.077 1.7E-06 56.1 9.2 89 151-245 513-617 (867)
174 COG3769 Predicted hydrolase (H 95.2 0.027 6E-07 50.5 4.7 58 110-194 7-64 (274)
175 PRK01122 potassium-transportin 95.1 0.12 2.5E-06 53.4 9.5 79 151-244 443-521 (679)
176 PRK10671 copA copper exporting 95.1 0.14 3E-06 53.8 10.1 80 151-245 648-727 (834)
177 COG4996 Predicted phosphatase 95.0 0.094 2E-06 43.6 6.9 119 112-240 2-126 (164)
178 TIGR02244 HAD-IG-Ncltidse HAD 95.0 0.086 1.9E-06 50.1 7.5 38 153-193 184-221 (343)
179 PF02358 Trehalose_PPase: Treh 95.0 0.027 5.8E-07 49.9 3.9 47 114-181 1-48 (235)
180 PF12689 Acid_PPase: Acid Phos 94.8 0.2 4.3E-06 43.0 8.6 81 110-196 3-86 (169)
181 TIGR01523 ATPase-IID_K-Na pota 94.8 0.13 2.8E-06 55.5 9.2 89 151-244 644-759 (1053)
182 PRK10517 magnesium-transportin 94.8 0.15 3.2E-06 54.3 9.4 89 151-245 548-652 (902)
183 TIGR01116 ATPase-IIA1_Ca sarco 94.7 0.16 3.4E-06 54.0 9.4 91 151-245 535-645 (917)
184 PRK15122 magnesium-transportin 94.5 0.18 3.9E-06 53.6 9.3 89 151-245 548-652 (903)
185 PLN03063 alpha,alpha-trehalose 94.4 0.1 2.2E-06 54.8 7.1 64 108-192 505-569 (797)
186 COG4359 Uncharacterized conser 94.2 0.35 7.6E-06 42.4 8.7 92 151-247 71-176 (220)
187 KOG0207 Cation transport ATPas 94.0 0.3 6.4E-06 51.5 9.2 100 108-245 701-800 (951)
188 PLN03064 alpha,alpha-trehalose 94.0 0.16 3.4E-06 54.2 7.3 70 108-192 589-659 (934)
189 KOG1618 Predicted phosphatase 93.8 0.15 3.2E-06 48.1 6.1 66 109-203 34-107 (389)
190 TIGR01494 ATPase_P-type ATPase 92.6 0.49 1.1E-05 46.6 8.2 76 151-244 345-420 (499)
191 PF10307 DUF2410: Hypothetical 92.6 0.85 1.8E-05 40.1 8.7 88 156-245 57-148 (197)
192 TIGR01657 P-ATPase-V P-type AT 90.7 0.82 1.8E-05 49.5 7.9 32 151-182 654-685 (1054)
193 COG0474 MgtA Cation transport 90.5 1.3 2.9E-05 47.2 9.2 90 151-245 545-653 (917)
194 KOG0202 Ca2+ transporting ATPa 88.5 2.3 5E-05 44.9 8.8 90 151-245 582-692 (972)
195 PF06189 5-nucleotidase: 5'-nu 88.5 1.4 2.9E-05 40.5 6.4 156 74-249 77-251 (264)
196 COG4087 Soluble P-type ATPase 85.5 3.8 8.2E-05 34.2 6.8 79 153-245 30-108 (152)
197 KOG2470 Similar to IMP-GMP spe 84.3 2 4.3E-05 41.3 5.3 30 155-184 242-271 (510)
198 KOG3109 Haloacid dehalogenase- 81.4 10 0.00023 34.2 8.5 109 138-252 81-201 (244)
199 PF09949 DUF2183: Uncharacteri 81.0 6.7 0.00014 30.7 6.4 71 172-243 2-78 (100)
200 COG5610 Predicted hydrolase (H 79.9 5.1 0.00011 39.8 6.5 90 153-245 99-190 (635)
201 TIGR01459 HAD-SF-IIA-hyp4 HAD- 79.7 0.61 1.3E-05 41.4 0.1 93 155-252 140-237 (242)
202 COG3882 FkbH Predicted enzyme 77.0 17 0.00038 36.4 9.2 160 61-240 164-337 (574)
203 cd06591 GH31_xylosidase_XylS X 72.3 12 0.00025 34.9 6.6 42 154-195 64-105 (319)
204 smart00851 MGS MGS-like domain 71.0 22 0.00047 26.5 6.7 63 158-238 2-64 (90)
205 PF10137 TIR-like: Predicted n 69.7 16 0.00035 29.7 6.1 64 171-241 1-64 (125)
206 PF00702 Hydrolase: haloacid d 69.1 3 6.5E-05 35.0 1.8 21 220-240 134-154 (215)
207 cd06595 GH31_xylosidase_XylS-l 65.6 14 0.00031 33.9 5.6 24 155-178 73-96 (292)
208 KOG3189 Phosphomannomutase [Li 65.6 12 0.00026 33.5 4.7 15 110-124 11-25 (252)
209 TIGR01452 PGP_euk phosphoglyco 63.9 2.4 5.1E-05 38.5 0.1 26 155-181 145-170 (279)
210 KOG2134 Polynucleotide kinase 61.5 7.4 0.00016 37.8 3.0 59 107-179 72-130 (422)
211 cd00532 MGS-like MGS-like doma 61.1 69 0.0015 24.9 8.1 65 156-238 12-77 (112)
212 KOG1605 TFIIF-interacting CTD 61.1 5.7 0.00012 36.5 2.1 82 106-192 85-169 (262)
213 PLN02499 glycerol-3-phosphate 60.8 5.6 0.00012 39.7 2.1 33 161-197 101-134 (498)
214 COG2216 KdpB High-affinity K+ 59.8 43 0.00094 34.1 8.0 76 154-245 448-524 (681)
215 PF03345 DDOST_48kD: Oligosacc 59.7 29 0.00062 34.1 6.7 76 159-242 15-91 (423)
216 cd01424 MGS_CPS_II Methylglyox 59.3 67 0.0015 24.7 7.7 34 156-197 13-46 (110)
217 cd06416 GH25_Lys1-like Lys-1 i 56.5 27 0.00058 29.9 5.4 68 90-180 67-134 (196)
218 KOG0203 Na+/K+ ATPase, alpha s 56.4 48 0.001 35.5 8.0 81 108-204 560-654 (1019)
219 PF13701 DDE_Tnp_1_4: Transpos 54.5 36 0.00077 33.5 6.5 90 108-197 137-244 (448)
220 KOG2961 Predicted hydrolase (H 54.2 37 0.00079 29.2 5.6 15 109-123 42-56 (190)
221 cd05013 SIS_RpiR RpiR-like pro 54.2 19 0.00042 27.8 3.9 26 156-181 74-99 (139)
222 TIGR02468 sucrsPsyn_pln sucros 53.8 40 0.00086 36.9 7.1 32 170-204 805-838 (1050)
223 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.7 19 0.00041 27.9 3.7 28 154-181 58-85 (126)
224 cd02875 GH18_chitobiase Chitob 53.6 55 0.0012 31.0 7.5 77 159-237 67-159 (358)
225 PF01380 SIS: SIS domain SIS d 53.2 21 0.00045 27.6 3.9 29 154-182 65-93 (131)
226 cd05014 SIS_Kpsf KpsF-like pro 52.8 20 0.00044 27.9 3.8 29 154-182 59-87 (128)
227 PLN02177 glycerol-3-phosphate 49.9 9.1 0.0002 38.2 1.6 26 109-134 21-49 (497)
228 cd06598 GH31_transferase_CtsZ 49.8 55 0.0012 30.4 6.7 42 154-195 68-109 (317)
229 cd06592 GH31_glucosidase_KIAA1 49.7 56 0.0012 30.1 6.7 24 154-177 68-91 (303)
230 TIGR01652 ATPase-Plipid phosph 49.7 69 0.0015 34.9 8.3 29 151-179 629-657 (1057)
231 PLN03190 aminophospholipid tra 49.7 57 0.0012 36.2 7.7 30 151-180 724-753 (1178)
232 PF09198 T4-Gluco-transf: Bact 49.1 5.9 0.00013 25.1 0.1 14 59-72 9-22 (38)
233 TIGR03127 RuMP_HxlB 6-phospho 48.7 24 0.00052 29.5 3.8 30 153-182 83-112 (179)
234 KOG0204 Calcium transporting A 48.5 89 0.0019 33.7 8.4 90 151-245 645-753 (1034)
235 TIGR01458 HAD-SF-IIA-hyp3 HAD- 48.1 6.6 0.00014 35.3 0.3 26 156-181 123-148 (257)
236 cd05710 SIS_1 A subgroup of th 46.9 29 0.00062 27.3 3.8 29 154-182 59-87 (120)
237 cd06415 GH25_Cpl1-like Cpl-1 l 46.9 36 0.00079 29.2 4.7 66 88-179 65-131 (196)
238 cd06599 GH31_glycosidase_Aec37 46.3 80 0.0017 29.3 7.2 42 154-195 71-112 (317)
239 cd05017 SIS_PGI_PMI_1 The memb 45.2 30 0.00065 27.0 3.7 26 154-179 55-80 (119)
240 KOG0912 Thiol-disulfide isomer 44.3 77 0.0017 30.2 6.6 93 108-238 172-267 (375)
241 cd06600 GH31_MGAM-like This fa 44.1 46 0.00099 31.0 5.2 23 155-177 63-85 (317)
242 cd06414 GH25_LytC-like The Lyt 43.7 40 0.00087 28.8 4.5 70 88-180 68-137 (191)
243 PF14336 DUF4392: Domain of un 43.5 92 0.002 28.9 7.1 40 156-197 63-102 (291)
244 COG3603 Uncharacterized conser 43.3 41 0.0009 27.5 4.1 20 160-179 82-101 (128)
245 cd05006 SIS_GmhA Phosphoheptos 42.8 34 0.00074 28.6 3.8 30 153-182 112-141 (177)
246 cd05005 SIS_PHI Hexulose-6-pho 41.9 35 0.00076 28.6 3.8 30 153-182 86-115 (179)
247 cd06523 GH25_PlyB-like PlyB is 41.9 80 0.0017 26.7 6.0 60 88-179 65-125 (177)
248 PF02142 MGS: MGS-like domain 41.6 38 0.00083 25.5 3.6 71 157-240 1-71 (95)
249 cd01423 MGS_CPS_I_III Methylgl 41.1 1.7E+02 0.0036 22.7 8.3 72 156-242 13-84 (116)
250 COG4229 Predicted enolase-phos 41.1 16 0.00036 32.2 1.6 61 111-171 5-79 (229)
251 cd06603 GH31_GANC_GANAB_alpha 40.8 43 0.00093 31.4 4.5 24 154-177 62-85 (339)
252 cd06525 GH25_Lyc-like Lyc mura 40.1 41 0.00089 28.5 4.0 63 91-180 65-128 (184)
253 TIGR00441 gmhA phosphoheptose 39.9 41 0.0009 27.7 3.9 28 155-182 92-119 (154)
254 PF13477 Glyco_trans_4_2: Glyc 39.3 1.2E+02 0.0027 23.3 6.4 71 157-237 12-82 (139)
255 PRK13937 phosphoheptose isomer 39.0 41 0.00089 28.7 3.8 29 154-182 118-146 (188)
256 COG1184 GCD2 Translation initi 38.6 65 0.0014 30.3 5.2 42 156-197 130-173 (301)
257 PF13478 XdhC_C: XdhC Rossmann 37.8 1.5E+02 0.0033 24.1 6.8 75 157-239 9-90 (136)
258 PF07511 DUF1525: Protein of u 37.6 70 0.0015 25.7 4.6 48 67-116 41-90 (114)
259 TIGR03590 PseG pseudaminic aci 37.4 56 0.0012 29.6 4.6 40 155-197 17-56 (279)
260 cd00861 ProRS_anticodon_short 37.2 1E+02 0.0022 22.4 5.3 15 226-240 51-65 (94)
261 PRK10530 pyridoxal phosphate ( 37.2 94 0.002 27.3 6.0 15 232-246 217-231 (272)
262 cd06522 GH25_AtlA-like AtlA is 36.9 95 0.0021 26.5 5.8 64 88-179 68-133 (192)
263 cd01011 nicotinamidase Nicotin 36.8 1.2E+02 0.0025 26.0 6.3 39 159-197 127-166 (196)
264 PF01713 Smr: Smr domain; Int 36.4 98 0.0021 22.5 5.1 43 154-197 11-59 (83)
265 cd03012 TlpA_like_DipZ_like Tl 36.3 67 0.0015 25.0 4.4 44 154-197 41-87 (126)
266 TIGR01487 SPP-like sucrose-pho 36.0 75 0.0016 27.1 5.0 67 183-257 118-190 (215)
267 cd04795 SIS SIS domain. SIS (S 35.5 49 0.0011 23.5 3.3 22 155-176 60-81 (87)
268 cd01421 IMPCH Inosine monophos 35.5 53 0.0012 28.7 3.9 34 156-197 11-44 (187)
269 PF00070 Pyr_redox: Pyridine n 35.4 1.3E+02 0.0027 21.5 5.4 42 156-197 9-57 (80)
270 cd06601 GH31_lyase_GLase GLase 34.4 1.2E+02 0.0025 28.7 6.4 24 154-177 62-85 (332)
271 PF00578 AhpC-TSA: AhpC/TSA fa 33.9 93 0.002 23.5 4.8 40 155-197 45-84 (124)
272 TIGR03757 conj_TIGR03757 integ 33.7 97 0.0021 24.9 4.9 49 66-116 41-91 (113)
273 COG0279 GmhA Phosphoheptose is 33.3 56 0.0012 28.3 3.6 30 154-183 121-150 (176)
274 PF00857 Isochorismatase: Isoc 32.9 76 0.0016 25.9 4.4 38 160-197 102-140 (174)
275 PRK00994 F420-dependent methyl 32.9 85 0.0018 28.8 4.8 51 151-207 69-119 (277)
276 cd06299 PBP1_LacI_like_13 Liga 32.7 2.6E+02 0.0056 23.8 7.9 39 157-197 43-81 (265)
277 PRK10658 putative alpha-glucos 32.6 1.3E+02 0.0029 31.2 6.9 41 155-195 324-364 (665)
278 KOG1467 Translation initiation 32.0 2.4E+02 0.0053 28.5 8.2 103 53-197 297-413 (556)
279 PRK13938 phosphoheptose isomer 31.9 63 0.0014 28.1 3.9 30 153-182 124-153 (196)
280 PF08534 Redoxin: Redoxin; In 31.7 2E+02 0.0044 22.6 6.6 39 156-197 49-87 (146)
281 PRK12314 gamma-glutamyl kinase 31.5 3.6E+02 0.0078 24.4 8.9 85 154-240 32-144 (266)
282 PF13580 SIS_2: SIS domain; PD 31.5 50 0.0011 26.6 3.0 22 156-177 117-138 (138)
283 TIGR02764 spore_ybaN_pdaB poly 31.2 3.1E+02 0.0068 22.9 8.4 72 160-234 111-186 (191)
284 PF13986 DUF4224: Domain of un 31.2 46 0.001 22.4 2.3 26 175-206 11-36 (47)
285 cd06589 GH31 The enzymes of gl 30.6 1.5E+02 0.0033 26.6 6.3 41 155-197 65-109 (265)
286 cd06593 GH31_xylosidase_YicI Y 30.5 1.9E+02 0.0041 26.4 7.0 24 154-177 64-87 (308)
287 COG2044 Predicted peroxiredoxi 30.2 72 0.0016 26.0 3.6 61 110-190 35-95 (120)
288 PF10138 vWA-TerF-like: vWA fo 30.1 3.2E+02 0.007 24.1 8.0 96 83-193 16-129 (200)
289 smart00463 SMR Small MutS-rela 30.0 94 0.002 22.4 4.0 45 153-197 13-66 (80)
290 cd06602 GH31_MGAM_SI_GAA This 30.0 1.1E+02 0.0024 28.8 5.4 22 156-177 66-87 (339)
291 COG1568 Predicted methyltransf 29.8 1.2E+02 0.0025 28.7 5.3 17 108-124 174-190 (354)
292 PRK01424 S-adenosylmethionine: 29.2 56 0.0012 31.5 3.2 44 154-197 204-249 (366)
293 TIGR01691 enolase-ppase 2,3-di 29.0 35 0.00075 30.2 1.7 14 111-124 2-15 (220)
294 COG2344 AT-rich DNA-binding pr 28.4 1.1E+02 0.0024 27.1 4.7 44 153-197 130-173 (211)
295 PRK08063 enoyl-(acyl carrier p 28.3 1.1E+02 0.0023 26.2 4.7 36 159-194 18-53 (250)
296 PF04244 DPRP: Deoxyribodipyri 28.2 1.5E+02 0.0032 26.5 5.6 49 156-207 49-101 (224)
297 PRK10886 DnaA initiator-associ 28.1 81 0.0017 27.5 3.9 27 155-181 122-148 (196)
298 PF03033 Glyco_transf_28: Glyc 28.1 58 0.0013 25.4 2.8 37 155-197 12-48 (139)
299 TIGR01380 glut_syn glutathione 27.9 1.5E+02 0.0032 27.4 5.9 27 153-179 15-41 (312)
300 PRK13936 phosphoheptose isomer 27.9 80 0.0017 27.2 3.8 28 154-181 123-150 (197)
301 TIGR00511 ribulose_e2b2 ribose 27.9 1.2E+02 0.0027 28.1 5.3 40 158-197 128-169 (301)
302 COG1501 Alpha-glucosidases, fa 27.9 1.6E+02 0.0036 31.2 6.7 41 155-195 320-360 (772)
303 PRK12342 hypothetical protein; 27.8 4.7E+02 0.01 23.8 11.1 86 153-246 39-125 (254)
304 COG1224 TIP49 DNA helicase TIP 27.7 87 0.0019 30.6 4.2 65 141-206 277-359 (450)
305 cd06259 YdcF-like YdcF-like. Y 27.7 3.1E+02 0.0068 21.7 7.8 71 166-241 31-106 (150)
306 PRK02228 V-type ATP synthase s 27.6 2.9E+02 0.0062 21.3 6.8 41 156-196 30-72 (100)
307 PRK00192 mannosyl-3-phosphogly 27.6 1.8E+02 0.0039 25.9 6.2 72 165-246 144-223 (273)
308 PF02254 TrkA_N: TrkA-N domain 27.5 2.7E+02 0.0058 20.9 8.1 25 157-181 9-33 (116)
309 PF02547 Queuosine_synth: Queu 27.2 54 0.0012 31.3 2.8 70 154-235 182-253 (341)
310 PF06437 ISN1: IMP-specific 5' 27.2 2.2E+02 0.0047 27.9 6.8 46 109-178 146-191 (408)
311 cd03017 PRX_BCP Peroxiredoxin 27.1 1.8E+02 0.0038 22.6 5.5 40 155-197 43-82 (140)
312 PF13439 Glyco_transf_4: Glyco 26.7 80 0.0017 24.7 3.4 27 156-182 16-42 (177)
313 cd03018 PRX_AhpE_like Peroxire 26.4 1.8E+02 0.0038 22.9 5.4 41 154-197 47-87 (149)
314 TIGR00524 eIF-2B_rel eIF-2B al 26.2 1.3E+02 0.0028 28.1 5.1 40 158-197 139-181 (303)
315 PF00106 adh_short: short chai 26.1 1.1E+02 0.0024 24.2 4.2 37 158-194 13-51 (167)
316 PRK11337 DNA-binding transcrip 26.0 86 0.0019 28.3 3.8 29 154-182 199-227 (292)
317 PF05761 5_nucleotid: 5' nucle 26.0 74 0.0016 31.5 3.6 39 155-193 185-223 (448)
318 TIGR01501 MthylAspMutase methy 26.0 3E+02 0.0066 22.5 6.7 81 158-243 41-124 (134)
319 COG0809 QueA S-adenosylmethion 26.0 47 0.001 31.7 2.1 69 155-235 185-255 (348)
320 PRK00414 gmhA phosphoheptose i 25.7 92 0.002 26.8 3.8 28 154-181 123-150 (192)
321 KOG0391 SNF2 family DNA-depend 25.6 1.6E+02 0.0035 33.2 6.1 71 152-236 1259-1332(1958)
322 PF00532 Peripla_BP_1: Peripla 25.6 4E+02 0.0086 23.8 8.1 19 224-242 112-131 (279)
323 PF01183 Glyco_hydro_25: Glyco 25.3 2E+02 0.0044 23.9 5.8 67 89-179 63-130 (181)
324 TIGR00288 conserved hypothetic 24.7 4.4E+02 0.0095 22.4 12.2 104 108-236 22-136 (160)
325 COG4464 CapC Capsular polysacc 24.7 1.7E+02 0.0037 26.6 5.2 26 152-177 16-41 (254)
326 PF01055 Glyco_hydro_31: Glyco 24.6 2E+02 0.0043 27.7 6.3 43 153-195 80-125 (441)
327 KOG4549 Magnesium-dependent ph 24.6 2.7E+02 0.0057 23.2 5.9 72 109-187 4-78 (144)
328 PF01993 MTD: methylene-5,6,7, 24.5 2.1E+02 0.0046 26.3 5.8 59 143-207 55-118 (276)
329 cd06604 GH31_glucosidase_II_Ma 24.3 1.6E+02 0.0034 27.6 5.4 24 154-177 62-85 (339)
330 cd06524 GH25_YegX-like YegX is 24.2 1.5E+02 0.0033 25.1 4.9 63 92-179 70-133 (194)
331 TIGR01210 conserved hypothetic 24.2 5.5E+02 0.012 23.8 8.9 41 156-196 88-129 (313)
332 TIGR02990 ectoine_eutA ectoine 24.1 1.7E+02 0.0036 26.3 5.2 47 151-197 101-148 (239)
333 TIGR01370 cysRS possible cyste 24.1 2.7E+02 0.0059 26.2 6.8 29 156-184 187-219 (315)
334 PF01740 STAS: STAS domain; I 24.1 78 0.0017 24.1 2.8 56 110-197 48-103 (117)
335 PF05226 CHASE2: CHASE2 domain 24.0 2.2E+02 0.0047 25.8 6.2 16 108-123 39-54 (310)
336 PRK15482 transcriptional regul 23.9 99 0.0021 27.9 3.8 30 153-182 193-222 (285)
337 PRK08535 translation initiatio 23.9 1.6E+02 0.0034 27.5 5.2 41 157-197 132-174 (310)
338 TIGR00113 queA S-adenosylmethi 23.6 79 0.0017 30.3 3.2 44 154-197 183-228 (344)
339 COG1817 Uncharacterized protei 23.6 60 0.0013 30.9 2.3 47 147-197 5-51 (346)
340 PRK11557 putative DNA-binding 23.5 93 0.002 27.8 3.6 30 153-182 186-215 (278)
341 KOG0183 20S proteasome, regula 23.4 68 0.0015 28.9 2.5 23 142-164 153-175 (249)
342 PRK02947 hypothetical protein; 23.4 1E+02 0.0022 27.6 3.7 26 155-180 119-144 (246)
343 PRK00147 queA S-adenosylmethio 23.4 78 0.0017 30.3 3.1 44 154-197 182-227 (342)
344 smart00481 POLIIIAc DNA polyme 23.3 2.2E+02 0.0048 19.5 4.8 39 158-196 17-56 (67)
345 cd01542 PBP1_TreR_like Ligand- 23.3 4.6E+02 0.0099 22.1 8.3 82 157-242 43-126 (259)
346 KOG0832 Mitochondrial/chloropl 23.3 1.4E+02 0.003 27.3 4.4 42 156-197 95-136 (251)
347 PF13905 Thioredoxin_8: Thiore 23.2 1.4E+02 0.0031 21.5 4.0 41 154-196 19-60 (95)
348 COG1609 PurR Transcriptional r 23.1 4.9E+02 0.011 24.1 8.4 81 156-240 161-248 (333)
349 TIGR02026 BchE magnesium-proto 23.1 6.5E+02 0.014 24.8 9.7 49 69-124 204-253 (497)
350 KOG0205 Plasma membrane H+-tra 23.1 1.8E+02 0.004 30.7 5.7 88 152-245 491-599 (942)
351 PF06415 iPGM_N: BPG-independe 23.0 5.5E+02 0.012 23.0 8.3 86 151-237 9-103 (223)
352 COG1660 Predicted P-loop-conta 22.9 80 0.0017 29.4 2.9 29 171-199 2-30 (286)
353 cd03027 GRX_DEP Glutaredoxin ( 22.9 2.7E+02 0.0058 19.3 5.5 26 172-197 3-28 (73)
354 TIGR02463 MPGP_rel mannosyl-3- 22.9 2.2E+02 0.0048 24.2 5.7 14 232-245 197-210 (221)
355 COG1335 PncA Amidases related 22.8 1.1E+02 0.0024 25.8 3.8 37 161-197 124-161 (205)
356 PF04312 DUF460: Protein of un 22.8 1.1E+02 0.0024 25.5 3.5 53 112-192 45-97 (138)
357 cd06594 GH31_glucosidase_YihQ 22.5 1.9E+02 0.0042 26.8 5.6 24 155-178 70-93 (317)
358 cd00860 ThrRS_anticodon ThrRS 22.4 2.9E+02 0.0062 19.6 5.5 14 226-239 48-61 (91)
359 PF00532 Peripla_BP_1: Peripla 22.4 5.4E+02 0.012 22.9 8.4 51 156-206 104-161 (279)
360 PF06543 Lac_bphage_repr: Lact 22.2 77 0.0017 21.7 2.0 26 142-167 19-44 (49)
361 PRK12743 oxidoreductase; Provi 22.2 1.6E+02 0.0035 25.5 4.7 23 159-181 16-38 (256)
362 PLN02588 glycerol-3-phosphate 21.8 52 0.0011 33.2 1.6 25 110-134 50-77 (525)
363 TIGR00393 kpsF KpsF/GutQ famil 21.8 1.1E+02 0.0024 27.0 3.7 26 154-179 59-84 (268)
364 PRK12360 4-hydroxy-3-methylbut 21.8 3.9E+02 0.0084 24.8 7.3 69 160-239 45-125 (281)
365 cd08198 DHQS-like2 Dehydroquin 21.8 3.4E+02 0.0074 26.1 7.1 88 169-257 30-133 (369)
366 COG1820 NagA N-acetylglucosami 21.7 7.5E+02 0.016 24.1 10.0 87 107-202 116-216 (380)
367 PRK05557 fabG 3-ketoacyl-(acyl 21.7 1.7E+02 0.0037 24.6 4.7 23 159-181 19-41 (248)
368 cd06417 GH25_LysA-like LysA is 21.2 2E+02 0.0044 24.4 5.0 61 91-179 62-123 (195)
369 PF02951 GSH-S_N: Prokaryotic 21.2 1.3E+02 0.0029 24.2 3.6 27 153-179 15-41 (119)
370 KOG2599 Pyridoxal/pyridoxine/p 21.2 1.4E+02 0.003 27.9 4.1 41 139-179 149-190 (308)
371 cd04242 AAK_G5K_ProB AAK_G5K_P 21.1 5.8E+02 0.013 22.6 8.2 84 155-242 23-136 (251)
372 PTZ00331 alpha/beta hydrolase; 21.1 3.9E+02 0.0084 23.2 6.9 68 160-233 136-204 (212)
373 TIGR01426 MGT glycosyltransfer 21.1 1.4E+02 0.003 27.9 4.3 37 155-197 9-45 (392)
374 cd01012 YcaC_related YcaC rela 21.0 4.1E+02 0.0088 21.6 6.7 38 160-197 78-116 (157)
375 PRK12938 acetyacetyl-CoA reduc 21.0 2E+02 0.0042 24.5 5.0 36 159-194 17-52 (246)
376 COG2747 FlgM Negative regulato 20.8 1E+02 0.0022 23.9 2.8 33 70-102 60-92 (93)
377 cd00340 GSH_Peroxidase Glutath 20.8 2E+02 0.0042 23.2 4.7 44 154-197 39-88 (152)
378 PRK12825 fabG 3-ketoacyl-(acyl 20.8 1.8E+02 0.0039 24.4 4.7 33 159-191 20-52 (249)
379 PF03668 ATP_bind_2: P-loop AT 20.7 97 0.0021 28.9 3.1 29 170-198 1-29 (284)
380 PF09587 PGA_cap: Bacterial ca 20.7 3.3E+02 0.0072 24.0 6.5 67 110-197 37-108 (250)
381 KOG1344 Predicted histone deac 20.6 2.3E+02 0.005 26.1 5.3 99 72-195 219-322 (324)
382 PF13242 Hydrolase_like: HAD-h 20.6 39 0.00084 24.1 0.4 21 233-253 24-46 (75)
383 cd07041 STAS_RsbR_RsbS_like Su 20.3 3E+02 0.0065 20.6 5.4 57 109-197 40-96 (109)
384 PRK07523 gluconate 5-dehydroge 20.3 1.7E+02 0.0037 25.2 4.5 35 159-194 24-58 (255)
385 PRK08335 translation initiatio 20.2 2.2E+02 0.0049 26.2 5.3 41 157-197 121-163 (275)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=6e-81 Score=553.77 Aligned_cols=218 Identities=52% Similarity=0.930 Sum_probs=212.4
Q ss_pred CCCCcccceeeeeeecCccCCCCCcccchHHHHhhhccccchhhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccC
Q 024759 45 PAGFSCLSWRFGVETKNIRDLPTVPKVCQHYVADYMLSDQFLQDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITH 124 (263)
Q Consensus 45 ~~~~~c~swrl~vE~nn~~~~~~vP~~C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n 124 (263)
..++||+||||+||+|||++|+|||++|++||++||+|+||++|+++|+++|..|++++.+.++|++|||||||||+|||
T Consensus 12 ~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN 91 (229)
T TIGR01675 12 IDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSN 91 (229)
T ss_pred CCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeee
Q 024759 125 VDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILR 204 (263)
Q Consensus 125 ~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr 204 (263)
+||++.++||+++|++++|++|+.++++||+|++++++++|+++|++|||+|||++.+|++|.+||+++||++|++|+||
T Consensus 92 ~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR 171 (229)
T TIGR01675 92 IPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILR 171 (229)
T ss_pred HHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCCCccceEEEcCCCCCcCC
Q 024759 205 ETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGDYPGHRTFKLPNPVFYTE 263 (263)
Q Consensus 205 ~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~~g~r~fkLPNp~Yyi~ 263 (263)
+.++ .+++++.||+++|++++++||+|+++||||||||.|++.|.|+|||||||||||
T Consensus 172 ~~~d-~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 172 GLED-SNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred CCCC-CCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 9776 677899999999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=9.1e-80 Score=555.40 Aligned_cols=246 Identities=37% Similarity=0.739 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhhcCccccc--cccccccCcccCCCC--CCCCCcccceeeeeeecCccCCCCCcccchHHHHhhhcccc
Q 024759 9 LLVYVAATVLSISEGSERIH--SLIRQPVAGTVSAES--DPAGFSCLSWRFGVETKNIRDLPTVPKVCQHYVADYMLSDQ 84 (263)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~c~swrl~vE~nn~~~~~~vP~~C~~~v~~Y~~~~q 84 (263)
+++||+++|++. .| | ...++++++.++.++ ..+++||.||||+||+||+++|+|||++|++||++||+|||
T Consensus 3 ~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggq 77 (275)
T TIGR01680 3 LVFFVAAILVAS----QC-HGAAFDMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQ 77 (275)
T ss_pred EEeehHHHHhhc----cc-ccchhhhhcccccccccccccCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchh
Confidence 456666666555 44 4 566999999998864 47789999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHH-HHHHcCCCCCCHHHHHHHH
Q 024759 85 FLQDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALI-NYLAQGISPALPESLKLYR 163 (263)
Q Consensus 85 Y~~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~-~wv~~~~~paip~~l~l~~ 163 (263)
|++|+++|+++|+.|++++.. ++++|||||||||+|||+||++.++||+++|+++.|+ +|+..+++||+|++++|++
T Consensus 78 Y~~D~~~v~~~a~~y~~~~~~--~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~ 155 (275)
T TIGR01680 78 YRSDSKTVNQQAYFFARDLEV--HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYN 155 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCcC--CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHH
Confidence 999999999999999998875 5789999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCcccc
Q 024759 164 RLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDL 243 (263)
Q Consensus 164 ~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl 243 (263)
+|+++|++|||||||+|.+|++|++||+++||+.|++|+||++++..+++++.||+++|++++++||+|+++||||||||
T Consensus 156 ~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl 235 (275)
T TIGR01680 156 KLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDL 235 (275)
T ss_pred HHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhc
Confidence 99999999999999999999999999999999999999999886535678999999999999999999999999999999
Q ss_pred CCCCcc-ceEEEcCCCCCc
Q 024759 244 LGDYPG-HRTFKLPNPVFY 261 (263)
Q Consensus 244 ~G~~~g-~r~fkLPNp~Yy 261 (263)
.|++.| +|+||||||||-
T Consensus 236 ~G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 236 KGEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred cCCCccCcceecCCCcccc
Confidence 999986 799999999763
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=4.3e-62 Score=434.27 Aligned_cols=213 Identities=36% Similarity=0.636 Sum_probs=186.7
Q ss_pred CCCcccceeeeeeecCccCCCCCcccchHHHHhhhccccchhhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCc
Q 024759 46 AGFSCLSWRFGVETKNIRDLPTVPKVCQHYVADYMLSDQFLQDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHV 125 (263)
Q Consensus 46 ~~~~c~swrl~vE~nn~~~~~~vP~~C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~ 125 (263)
...+|.||+++||+|| .+|.+ ++|++|+.+ |+++||.+|+++++.||++|+++....+++++|||||||||+|+|+
T Consensus 12 ~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTvLsn~ 87 (229)
T PF03767_consen 12 AALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETVLSNS 87 (229)
T ss_dssp ------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTTEEHH
T ss_pred HHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCcccccCH
Confidence 4579999999999999 99955 999999999 9999999999999999999999887777999999999999999999
Q ss_pred hhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeec
Q 024759 126 DFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRE 205 (263)
Q Consensus 126 ~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~ 205 (263)
+|++.+.+++..|+++.|++|+..+.++++|++++|+++++++|++|||||||++.+|++|++||+++||+.|++|+||+
T Consensus 88 ~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~ 167 (229)
T PF03767_consen 88 PYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRP 167 (229)
T ss_dssp HHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEE
T ss_pred HHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhcccc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC----CCccceEEEcCCCCCcC
Q 024759 206 TGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG----DYPGHRTFKLPNPVFYT 262 (263)
Q Consensus 206 ~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G----~~~g~r~fkLPNp~Yyi 262 (263)
+++..++++..||+++|++|+++||+|+++|||||+||.| +..|+|+|||||||||+
T Consensus 168 ~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 168 DKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp ESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred ccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 8763455789999999999999999999999999999999 67789999999999985
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=1.2e-38 Score=289.36 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=158.1
Q ss_pred hHHHHhhhccccchhhHHHHHHHHHHHHHhhc-ccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCC
Q 024759 73 QHYVADYMLSDQFLQDSKVVTEEAFKYAKTVK-LAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGI 151 (263)
Q Consensus 73 ~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~-~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~ 151 (263)
..-+..|.+|++|++.+..+.+.|..++++.. ...++++|||||||||+|+|+||+..+.+++.+|+++.|++|+..+.
T Consensus 37 ~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~ 116 (266)
T TIGR01533 37 TMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQ 116 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCC
Confidence 35688899999999888888888887775443 33577899999999999999999988889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc--ceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW--EKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~--~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
++++|++++++++|.++|++|+|+|+|++..++.|.+||+++|++.+ +++++|+.. ..|..+|+.|. +|
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~--------~~K~~rr~~I~-~~ 187 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK--------SSKESRRQKVQ-KD 187 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC--------CCcHHHHHHHH-hc
Confidence 99999999999999999999999999999999999999999999864 689998642 14878887776 68
Q ss_pred CeEEEEeCCCccccCCC-------------------CccceEEEcCCCCC
Q 024759 230 YRIIGNMGDQWCDLLGD-------------------YPGHRTFKLPNPVF 260 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~-------------------~~g~r~fkLPNp~Y 260 (263)
|+|+++||||++||.+. .||+++|.||||||
T Consensus 188 y~Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~Y 237 (266)
T TIGR01533 188 YEIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMY 237 (266)
T ss_pred CCEEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCC
Confidence 99999999999999762 48999999999999
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=100.00 E-value=6.7e-34 Score=251.32 Aligned_cols=172 Identities=22% Similarity=0.328 Sum_probs=147.9
Q ss_pred HHhhhccccchhhHHHHHHHHHHHHH-----hhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcC
Q 024759 76 VADYMLSDQFLQDSKVVTEEAFKYAK-----TVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQG 150 (263)
Q Consensus 76 v~~Y~~~~qY~~D~~~v~~~A~~ya~-----~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~ 150 (263)
|..|-.+++| +++..|+++-|+ .+++..++++|||+|||||+|+|+||......++.+|+|++|++||.++
T Consensus 44 v~w~Q~s~E~----~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~ 119 (274)
T COG2503 44 VNWYQQSAEY----QALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAK 119 (274)
T ss_pred HHHhhhhHHH----HHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhc
Confidence 4555556665 589999998875 3455667788999999999999999998888888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc-HHHHHHHHHHcCCCC--cceeeeecCCCCCCcchhhhhHHHHHHHHh
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPS-RNFTESNLKNVGYHS--WEKLILRETGEWNDTTQRAHKSAERRKLVE 227 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~-r~~T~~nL~~~G~~~--~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~ 227 (263)
.+.++||+++|++++.++|.+|||||+|+.+. .+.|.+||++.|+|. -++++++.+.. -|+.+|++++
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k--------~Ke~R~~~v~- 190 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKK--------SKEVRRQAVE- 190 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCC--------cHHHHHHHHh-
Confidence 99999999999999999999999999998766 899999999999998 35677774432 2777776665
Q ss_pred cCCeEEEEeCCCccccCCC------------------CccceEEEcCCCCC
Q 024759 228 SGYRIIGNMGDQWCDLLGD------------------YPGHRTFKLPNPVF 260 (263)
Q Consensus 228 ~Gy~Iv~~iGDq~sDl~G~------------------~~g~r~fkLPNp~Y 260 (263)
++|.||+.|||++.||... .||.+++.||||||
T Consensus 191 k~~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~Y 241 (274)
T COG2503 191 KDYKIVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMY 241 (274)
T ss_pred hccceeeEecCchhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCcc
Confidence 6999999999999999852 58999999999999
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.88 E-value=1.7e-22 Score=181.00 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=106.2
Q ss_pred CcEEEEecCCccccCchh--hhhcCCC--cccC--ChHHHHHHHHcC--CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 110 KDIWILDVDDSLITHVDF--YAQNGFG--TEIF--DVTALINYLAQG--ISPALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y--~~~~~~g--~~~y--~~~~~~~wv~~~--~~paip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
+.+|+||||||+|+|+|| +.++.|+ ...| +++-|+.|.... .+.+.|++++++++|+++|++|+|||||++.
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 349999999999999885 4445553 3446 344466665543 4556677999999999999999999999998
Q ss_pred cHHHHHHHHHH-cCCCC--cceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC----CccceEEE
Q 024759 182 SRNFTESNLKN-VGYHS--WEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD----YPGHRTFK 254 (263)
Q Consensus 182 ~r~~T~~nL~~-~G~~~--~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~----~~g~r~fk 254 (263)
.++.|.+||.+ .|+|. +..+++.++.. +|...+..+++ +.+..+|||+++||.++ -.+.|.+.
T Consensus 143 k~~~t~~~Llk~~gip~~~~f~vil~gd~~--------~K~~K~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMNPVIFAGDKP--------GQYTKTQWLKK--KNIRIFYGDSDNDITAAREAGARGIRILR 212 (237)
T ss_pred ccHHHHHHHHHHcCCCcccceeEEEcCCCC--------CCCCHHHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEEec
Confidence 89999999997 89953 33556554321 45555556655 45688899999999875 45788899
Q ss_pred cCCCCC
Q 024759 255 LPNPVF 260 (263)
Q Consensus 255 LPNp~Y 260 (263)
.|||+|
T Consensus 213 G~~~~~ 218 (237)
T PRK11009 213 AANSTY 218 (237)
T ss_pred CCCCCC
Confidence 999999
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.74 E-value=1.2e-17 Score=149.73 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=96.6
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCC---------hHHHHHHHHcCCCCCCHH--HHHHHHHHHHCCCEEEEEcCCC
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFD---------VTALINYLAQGISPALPE--SLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~---------~~~~~~wv~~~~~paip~--~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
.+|+|||||||++|+|+. . +|...++ +..|+.|........+|. +.+++++++++|++++|+|+|+
T Consensus 64 ~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~ 140 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRT 140 (237)
T ss_pred eEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 399999999999999986 2 3433333 367999988876655555 9999999999999999999998
Q ss_pred cccHHHHHHHHH-HcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC-CccceEE
Q 024759 180 EPSRNFTESNLK-NVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD-YPGHRTF 253 (263)
Q Consensus 180 e~~r~~T~~nL~-~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~-~~g~r~f 253 (263)
+..++.|.++|. ..|++.+..+++..+.. .. .|...+..+++ +.++.++||+.+||.++ ..|.+.+
T Consensus 141 ~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~-~~-----~Kp~~~~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 141 PGKTDTVSKTLAKNFHIPAMNPVIFAGDKP-GQ-----YQYTKTQWIQD--KNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCcCHHHHHHHHHHhCCchheeEEECCCCC-CC-----CCCCHHHHHHh--CCCeEEEeCCHHHHHHHHHCCCCEE
Confidence 776666777766 58998766777765543 11 23333444544 55688999999999865 3344443
No 8
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.38 E-value=2.6e-12 Score=104.94 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=63.1
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHH------
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRN------ 184 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~------ 184 (263)
++|+|||||||+.+. .++|. ..++.+++++.+++++++|++|+|+|||+...+.
T Consensus 2 K~i~~DiDGTL~~~~---------~~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i 61 (126)
T TIGR01689 2 KRLVMDLDNTITLTE---------NGDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKI 61 (126)
T ss_pred CEEEEeCCCCcccCC---------CCccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhcccccc
Confidence 589999999998641 01121 1467899999999999999999999999988876
Q ss_pred ------HHHHHHHHcCCCCcceeeeecC
Q 024759 185 ------FTESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 185 ------~T~~nL~~~G~~~~~~Lilr~~ 206 (263)
.|.+||.++|+|+ ++|+||.+
T Consensus 62 ~~~~~~~t~~wL~k~~ipY-d~l~~~kp 88 (126)
T TIGR01689 62 NIHTLPIIILWLNQHNVPY-DEIYVGKP 88 (126)
T ss_pred chhhHHHHHHHHHHcCCCC-ceEEeCCC
Confidence 9999999999995 99999985
No 9
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.37 E-value=6.4e-12 Score=105.92 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=86.8
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
.|++||||||+.+... .+... ..++....|++.+++++++++|++|+|+|||+..+...|.++|.
T Consensus 1 iVisDIDGTL~~sd~~--~~~~~-------------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 1 IVISDIDGTITKSDVL--GHVVP-------------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CEEEecCCCCcccccc--ccccc-------------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4899999999976210 00000 01123446999999999999999999999999999999999999
Q ss_pred H-----cCCCCcceeeeecCCCCC-------CcchhhhhHHHHHHHHh----cCCeEEEEeCCCccccC
Q 024759 192 N-----VGYHSWEKLILRETGEWN-------DTTQRAHKSAERRKLVE----SGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 192 ~-----~G~~~~~~Lilr~~~~~~-------~~~~~~yKs~~R~~l~~----~Gy~Iv~~iGDq~sDl~ 244 (263)
+ +++|. ..+++++..... .+....+|.+..+.|.+ .+..+++.+||..+|..
T Consensus 66 ~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~ 133 (157)
T smart00775 66 QIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVI 133 (157)
T ss_pred HhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHH
Confidence 8 55764 468887764310 22344588888888876 47789999999999986
No 10
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.35 E-value=3.1e-12 Score=109.62 Aligned_cols=141 Identities=17% Similarity=0.211 Sum_probs=98.4
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCCh--------HHHHHHHHcCC---CCCCHHHHHHHHHHHHCCCEEEEEc
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDV--------TALINYLAQGI---SPALPESLKLYRRLLRLGFKIVLLT 176 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~--------~~~~~wv~~~~---~paip~~l~l~~~l~~~G~~I~~iT 176 (263)
..+-+|-||||+|+|-++|++ .+|.+.|+| ..|++-++.+- .-|-.-+.+|+++.+.+|-+|+|+|
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F---~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvT 137 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGF---WRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVT 137 (237)
T ss_pred CCCeeEeeccCCeeEeccccc---ccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEe
Confidence 334599999999999999998 344555544 23444455432 2233568899999999999999999
Q ss_pred CCCcccHHHHHHHHHHcCCCC--cceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC----Cccc
Q 024759 177 GRMEPSRNFTESNLKNVGYHS--WEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD----YPGH 250 (263)
Q Consensus 177 gR~e~~r~~T~~nL~~~G~~~--~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~----~~g~ 250 (263)
||+....+.+.+-|.+ .|+. ...+++.++. . ..++...-+.|++++ +....||..+|+..+ .+|.
T Consensus 138 GRt~gk~d~vsk~Lak-~F~i~~m~pv~f~Gdk---~---k~~qy~Kt~~i~~~~--~~IhYGDSD~Di~AAkeaG~RgI 208 (237)
T COG3700 138 GRTPGKTDTVSKTLAK-NFHITNMNPVIFAGDK---P---KPGQYTKTQWIQDKN--IRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred cCCCCcccccchhHHh-hcccCCCcceeeccCC---C---CcccccccHHHHhcC--ceEEecCCchhhhHHHhcCccce
Confidence 9998877777777765 4543 1223333322 2 223444556787754 566899999999864 4689
Q ss_pred eEEEcCCCCC
Q 024759 251 RTFKLPNPVF 260 (263)
Q Consensus 251 r~fkLPNp~Y 260 (263)
|..+-||..|
T Consensus 209 RilRAaNSTy 218 (237)
T COG3700 209 RILRAANSTY 218 (237)
T ss_pred eEEecCCccC
Confidence 9999999988
No 11
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.31 E-value=1.3e-11 Score=112.67 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=97.5
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
.++++++||+|||+..+.. +.+| +|......++.|+++++++.|+++|++++++|||++..+..|.
T Consensus 156 ~~~~~~~~D~dgtl~~~~~--------~~~~------~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l 221 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGG--------RSPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV 221 (300)
T ss_pred CCCCEEEEECCCcCcCCCC--------CCcc------chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH
Confidence 4468999999999998732 2334 3566667889999999999999999999999999999999999
Q ss_pred HHHHHcCCCC-------cceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCCC-ccceEE
Q 024759 188 SNLKNVGYHS-------WEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGDY-PGHRTF 253 (263)
Q Consensus 188 ~nL~~~G~~~-------~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~-~g~r~f 253 (263)
+||...|+.. ...++||+... ++++...+....+++....+.++.+|||...|+.++. .|-.++
T Consensus 222 ~~l~~~~~~f~~i~~~~~~~~~~~~~~~--~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 222 EWLRQTDIWFDDLIGRPPDMHFQREQGD--KRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred HHHHHcCCchhhhhCCcchhhhcccCCC--CCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 9999987221 13456666554 4555555655555544445789999999999998753 344443
No 12
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.28 E-value=2.3e-11 Score=102.77 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=95.4
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
+||+|||||+..+.- . .+... ..|++-.-|++.++|+++.++|++|+|+|+|+..+...|.+||.
T Consensus 1 VVvsDIDGTiT~SD~-~-G~i~~-------------~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV-L-GHILP-------------ILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred CEEEeccCCcCccch-h-hhhhh-------------ccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 489999999997610 0 00000 11344566999999999999999999999999999999999999
Q ss_pred Hc-----CCCCcceeeeecCCC-------CCCcchhhhhHHHHHHHHhc----CCeEEEEeCCCccccCC-----CCccc
Q 024759 192 NV-----GYHSWEKLILRETGE-------WNDTTQRAHKSAERRKLVES----GYRIIGNMGDQWCDLLG-----DYPGH 250 (263)
Q Consensus 192 ~~-----G~~~~~~Lilr~~~~-------~~~~~~~~yKs~~R~~l~~~----Gy~Iv~~iGDq~sDl~G-----~~~g~ 250 (263)
.+ ++|. .-+++.|+.- --.+....||....+.|+.. +-.+.+-+|...+|+.. -+ -.
T Consensus 66 ~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip-~~ 143 (157)
T PF08235_consen 66 QHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP-KS 143 (157)
T ss_pred HHHhCCccCCC-CCEEECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC-hh
Confidence 99 9996 5677765431 01234678999999999875 88899999999999973 33 35
Q ss_pred eEEE
Q 024759 251 RTFK 254 (263)
Q Consensus 251 r~fk 254 (263)
|.|.
T Consensus 144 rIF~ 147 (157)
T PF08235_consen 144 RIFI 147 (157)
T ss_pred hEEE
Confidence 6665
No 13
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.14 E-value=3e-10 Score=96.32 Aligned_cols=108 Identities=29% Similarity=0.345 Sum_probs=82.5
Q ss_pred CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHH
Q 024759 107 GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 107 ~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T 186 (263)
..|..++++|+|+||+... ...+.|++.+++..+++.|.+++++||.+|...
T Consensus 25 ~~Gikgvi~DlDNTLv~wd-------------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV--- 76 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWD-------------------------NPDATPELRAWLAELKEAGIKVVVVSNNKESRV--- 76 (175)
T ss_pred HcCCcEEEEeccCceeccc-------------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH---
Confidence 3688999999999999741 234569999999999999999999999876543
Q ss_pred HHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe--EEEEeCCCc-cccCCCC-ccceEEE
Q 024759 187 ESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYR--IIGNMGDQW-CDLLGDY-PGHRTFK 254 (263)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~--Iv~~iGDq~-sDl~G~~-~g~r~fk 254 (263)
..++.+.|+++ +.+.... +-...|+++++.+.. -+++||||+ +|+.|++ .|.|++.
T Consensus 77 ~~~~~~l~v~f----i~~A~KP--------~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIl 136 (175)
T COG2179 77 ARAAEKLGVPF----IYRAKKP--------FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTIL 136 (175)
T ss_pred HhhhhhcCCce----eecccCc--------cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEE
Confidence 47788889986 5554321 224566777664443 589999999 9999987 5777765
No 14
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.12 E-value=1.3e-10 Score=90.70 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=79.2
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
++|||+||||....++... .....+.|++++++++|+++|++|+++|+|. +.....+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~ 59 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLE 59 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHH
Confidence 4799999999987544321 1245788999999999999999999999999 777788898
Q ss_pred HcCCCCcceeeeecCCCCCC----------------cchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCCCc-cceEE
Q 024759 192 NVGYHSWEKLILRETGEWND----------------TTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGDYP-GHRTF 253 (263)
Q Consensus 192 ~~G~~~~~~Lilr~~~~~~~----------------~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~~-g~r~f 253 (263)
..|+......++...+.... ++....+....+.+.. .+.-+.++||+.+|+..+.. |.+++
T Consensus 60 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~igD~~~d~~~~~~~g~~~i 137 (139)
T cd01427 60 ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV-DPEEVLMVGDSLNDIEMAKAAGGLGV 137 (139)
T ss_pred HcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCC-ChhhEEEeCCCHHHHHHHHHcCCcee
Confidence 88874322223322211011 2222223233333332 25668899999999986543 55554
No 15
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.91 E-value=6.2e-09 Score=91.57 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYR 231 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~ 231 (263)
..+.|++.+++..|+++|++..++|+++ +..+..-|+.+|+..+-..+.-.++....||...... ..+++-|..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~---~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~---~~~~~~~~~ 161 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP---ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLL---LLLEKLGLD 161 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHH---HHHHHhCCC
Confidence 4789999999999999999999999999 4456677777888876666665333223444433322 233333444
Q ss_pred --EEEEeCCCccccCCCC
Q 024759 232 --IIGNMGDQWCDLLGDY 247 (263)
Q Consensus 232 --Iv~~iGDq~sDl~G~~ 247 (263)
-+.+|||...|+..+.
T Consensus 162 ~~~~l~VGDs~~Di~aA~ 179 (220)
T COG0546 162 PEEALMVGDSLNDILAAK 179 (220)
T ss_pred hhheEEECCCHHHHHHHH
Confidence 5789999999998653
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.84 E-value=8.6e-09 Score=83.01 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=76.9
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc-----HHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS-----RNF 185 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~-----r~~ 185 (263)
++++||+||||.++.++.. .|. ...+.|++.++++.|+++|++++++|+++... ++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~------------~~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~ 62 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVD------------DED------ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR 62 (132)
T ss_pred CEEEEeCCCceecCCCCCC------------CHH------HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH
Confidence 4899999999996533321 111 23678999999999999999999999998433 445
Q ss_pred HHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCC-CccccCCCC-ccceEE
Q 024759 186 TESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGD-QWCDLLGDY-PGHRTF 253 (263)
Q Consensus 186 T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGD-q~sDl~G~~-~g~r~f 253 (263)
..+.|+..|+.. ...+... .. .++....|+...++ +..-...-+.+||| ...|+.++. .|-+++
T Consensus 63 ~~~~l~~~~l~~-~~~~~~~-~~-~KP~~~~~~~~~~~-~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 63 VARRLEELGVPI-DVLYACP-HC-RKPKPGMFLEALKR-FNEIDPEESVYVGDQDLTDLQAAKRAGLAFI 128 (132)
T ss_pred HHHHHHHCCCCE-EEEEECC-CC-CCCChHHHHHHHHH-cCCCChhheEEEcCCCcccHHHHHHCCCeEE
Confidence 667888888874 3333333 22 22223344433332 21011234789999 589999763 455544
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.81 E-value=2.4e-08 Score=88.28 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
..+.|++.++++.|+++|+++.++|+.+ ++....-|+..|+..+...++-..+...+||. ..|... ++..|.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~----~~~~~~ 164 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAV----AEHTGL 164 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHH----HHHcCC
Confidence 6789999999999999999999999965 33344456777875543334433322133432 233322 222222
Q ss_pred e--EEEEeCCCccccCCCC-ccceE-EEcCCC
Q 024759 231 R--IIGNMGDQWCDLLGDY-PGHRT-FKLPNP 258 (263)
Q Consensus 231 ~--Iv~~iGDq~sDl~G~~-~g~r~-fkLPNp 258 (263)
. -..+|||..+|+.++. .|-++ +-.+||
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCC
Confidence 2 2788999999998764 56664 445665
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.80 E-value=2.5e-08 Score=86.55 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|+++.++||.. +.....-|+..|+..+...++-.+....++|. ..|+ +.+..-|
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~----~~~~~~~ 152 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVL----KALELLG 152 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHH----HHHHHcC
Confidence 35688999999999999999999999987 44556778888887755555554432123332 2232 2222222
Q ss_pred C--eEEEEeCCCccccCCC
Q 024759 230 Y--RIIGNMGDQWCDLLGD 246 (263)
Q Consensus 230 y--~Iv~~iGDq~sDl~G~ 246 (263)
. .-+.+|||..+|+.++
T Consensus 153 ~~~~~~~~iGDs~~Di~aa 171 (214)
T PRK13288 153 AKPEEALMVGDNHHDILAG 171 (214)
T ss_pred CCHHHEEEECCCHHHHHHH
Confidence 2 2367899999999975
No 19
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.80 E-value=3.6e-08 Score=84.43 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcc-hhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTT-QRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|++++++||-+. ......|+..|+..+-..++-.+.....|| ...|+...++. .-.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~---~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~-~~~- 164 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSP---AMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEAL-GVP- 164 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHh-CCC-
Confidence 457889999999999999999999999774 345566778887643333333332112333 23344333221 111
Q ss_pred CeEEEEeCCCccccCCC-CccceEEEcC
Q 024759 230 YRIIGNMGDQWCDLLGD-YPGHRTFKLP 256 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~-~~g~r~fkLP 256 (263)
-.-+.+|||+..|+.|+ ..|-+++-+.
T Consensus 165 p~~~~~vgD~~~Di~~A~~~G~~~i~v~ 192 (198)
T TIGR01428 165 PDEVLFVASNPWDLGGAKKFGFKTAWVN 192 (198)
T ss_pred hhhEEEEeCCHHHHHHHHHCCCcEEEec
Confidence 12367999999999987 4576666554
No 20
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.78 E-value=5.2e-08 Score=84.70 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCC--CcceeeeecCCCCCCcch-hhhhHHHHHHHHh
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYH--SWEKLILRETGEWNDTTQ-RAHKSAERRKLVE 227 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~--~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~ 227 (263)
..++.||+.++++.|+++|+++.++||..... ....|+..|+. .+...+.-..+....+|. ..|. ..+++
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~---~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~----~a~~~ 157 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDT---AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLIL----RAMEL 157 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHH----HHHHH
Confidence 35789999999999999999999999998544 34566666765 332333333332123332 2333 23333
Q ss_pred cCC---eEEEEeCCCccccCCC-CccceE-EEc
Q 024759 228 SGY---RIIGNMGDQWCDLLGD-YPGHRT-FKL 255 (263)
Q Consensus 228 ~Gy---~Iv~~iGDq~sDl~G~-~~g~r~-fkL 255 (263)
.|. .-+.+|||.++|+.++ ..|-++ +-+
T Consensus 158 ~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~ 190 (220)
T TIGR03351 158 TGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGV 190 (220)
T ss_pred cCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEE
Confidence 332 2488999999999976 356666 444
No 21
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.77 E-value=2.7e-08 Score=82.26 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=80.1
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc--------
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS-------- 182 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~-------- 182 (263)
++++||+||||..+...+ | ...|++| .+.|+++++++.|+++|++++++|+.+...
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~~------~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~ 64 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDDW------QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEA 64 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHHe------EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHH
Confidence 478999999999874321 1 1124443 578999999999999999999999976321
Q ss_pred ----HHHHHHHHHHcCCCCcceeeeec---CCC-CCCcchhhhhHHHHHHHHhcCC--eEEEEeCCCccccCCC-Cccce
Q 024759 183 ----RNFTESNLKNVGYHSWEKLILRE---TGE-WNDTTQRAHKSAERRKLVESGY--RIIGNMGDQWCDLLGD-YPGHR 251 (263)
Q Consensus 183 ----r~~T~~nL~~~G~~~~~~Lilr~---~~~-~~~~~~~~yKs~~R~~l~~~Gy--~Iv~~iGDq~sDl~G~-~~g~r 251 (263)
...+...|+..|+.. ...+... .++ ...+|.... .+..++..|- .-+.+|||+..|+.++ ..|-+
T Consensus 65 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~~---~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 65 FRAPNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPGL---ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHHH---HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 245566788888863 2223221 111 012332211 1222222222 2388999999999977 57888
Q ss_pred EEEcCC
Q 024759 252 TFKLPN 257 (263)
Q Consensus 252 ~fkLPN 257 (263)
++-+|.
T Consensus 141 ~v~i~~ 146 (147)
T TIGR01656 141 AVLLVD 146 (147)
T ss_pred EEEecC
Confidence 877764
No 22
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.77 E-value=4.9e-08 Score=86.21 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|+++.++|+.+. ......|+..|+..+...+...+.....||.. .|... .+++.-.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~-~~~l~~~- 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPE---YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVA-AERIGVA- 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHH-HHHhCCC-
Confidence 357899999999999999999999999874 44556788888876544555443311234433 22222 2222111
Q ss_pred CeEEEEeCCCccccCCCC-ccceEE
Q 024759 230 YRIIGNMGDQWCDLLGDY-PGHRTF 253 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~~-~g~r~f 253 (263)
-.-+.+|||..+|+.++. .|-+++
T Consensus 168 p~~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 168 PTDCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred hhhEEEeCCCHHHHHHHHHCCCcEE
Confidence 123889999999998652 444444
No 23
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.76 E-value=5.8e-08 Score=84.20 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
.++.|++.+++++|+++|++++++|+.+.. ....-|++.|+..+-..++-.++....+|. ..|+... ++.|.
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~---~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~----~~~~~ 165 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPV---KQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAAL----KRLGV 165 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHH----HHcCC
Confidence 478899999999999999999999998733 344567888886543333333322123332 3344332 22222
Q ss_pred --eEEEEeCCCc-cccCCCC-ccceEEEcCC
Q 024759 231 --RIIGNMGDQW-CDLLGDY-PGHRTFKLPN 257 (263)
Q Consensus 231 --~Iv~~iGDq~-sDl~G~~-~g~r~fkLPN 257 (263)
.-+.+|||++ +|+.++. .|-+++-++.
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQ 196 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECC
Confidence 2378999999 8998763 5666665544
No 24
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.75 E-value=5.2e-08 Score=89.02 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
..++.|++.++++.|+++|+++.++|+.. +..+...|+..|+..+-..+...+.. ..+ +...+..+++.|.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~-~~k-----~~~~~~~l~~~~~ 210 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPI-LSK-----RRALSQLVAREGW 210 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCC-CCC-----HHHHHHHHHHhCc
Confidence 35778999999999999999999999987 55667888999987654444433322 122 1222222232221
Q ss_pred --eEEEEeCCCccccCCCC-ccceEEEc
Q 024759 231 --RIIGNMGDQWCDLLGDY-PGHRTFKL 255 (263)
Q Consensus 231 --~Iv~~iGDq~sDl~G~~-~g~r~fkL 255 (263)
.-+.+|||..+|+.++. .|-+++-+
T Consensus 211 ~p~~~l~IGDs~~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 211 QPAAVMYVGDETRDVEAARQVGLIAVAV 238 (273)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEE
Confidence 24789999999999753 46665544
No 25
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.74 E-value=3.8e-08 Score=82.80 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
.+++|++.++++.|+++|+++.++|+.... ..-|+..|+..+-..++-+.+....+|. ..|+. .++..|.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~-----~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~----~~~~~~~ 156 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKNA-----PTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLA----AAEGLGV 156 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCccH-----HHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHH----HHHHcCC
Confidence 468899999999999999999999986432 2457788876543344433321123332 23332 2222222
Q ss_pred e--EEEEeCCCccccCCCC-ccceEEE
Q 024759 231 R--IIGNMGDQWCDLLGDY-PGHRTFK 254 (263)
Q Consensus 231 ~--Iv~~iGDq~sDl~G~~-~g~r~fk 254 (263)
. -+.+|||..+|+.++. .|-+++-
T Consensus 157 ~~~~~v~vgD~~~di~aA~~aG~~~i~ 183 (185)
T TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFAVG 183 (185)
T ss_pred CHHHeEEEecCHHHHHHHHHcCCEEEe
Confidence 1 2678999999999864 4666553
No 26
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.74 E-value=7.2e-08 Score=86.01 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|+++.++||.+.. .....|++.|+..+ ...++-.++...++|... .....+++.|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~---~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~---~~~~a~~~l~ 170 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTRE---MMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPW---MALKNAIELG 170 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHH---HHHHHHHHHHhcCCCCceEEccccCCCCCCCHH---HHHHHHHHcC
Confidence 4578999999999999999999999998844 44556666666554 234443332112333221 1223333333
Q ss_pred C---eEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 230 Y---RIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 230 y---~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
- .-+.+|||.++|+.++ ..|.+++-++.
T Consensus 171 ~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 171 VYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence 2 2378999999999987 45777776653
No 27
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.74 E-value=5.1e-08 Score=83.81 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhcCCeE
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVESGYRI 232 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~Gy~I 232 (263)
+.+++.++++.|+++|+++.++||++ +......|+..|+..+...++-.++. ..+|.. .|+...+ ++.... .-
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~-~~KP~p~~~~~~~~-~~~~~~-~~ 180 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRP---RKDAAKFLTTHGLEILFPVQIWMEDC-PPKPNPEPLILAAK-ALGVEA-CH 180 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHcCchhhCCEEEeecCC-CCCcCHHHHHHHHH-HhCcCc-cc
Confidence 44456899999999999999999997 55666788888987654555544432 123332 2332222 221111 13
Q ss_pred EEEeCCCccccCCCC
Q 024759 233 IGNMGDQWCDLLGDY 247 (263)
Q Consensus 233 v~~iGDq~sDl~G~~ 247 (263)
+.+|||..+|+.++.
T Consensus 181 ~i~vGD~~~Di~aA~ 195 (197)
T TIGR01548 181 AAMVGDTVDDIITGR 195 (197)
T ss_pred EEEEeCCHHHHHHHH
Confidence 679999999998754
No 28
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.72 E-value=8.8e-08 Score=85.75 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hh-hHHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AH-KSAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~y-Ks~~R~~l~~~ 228 (263)
..++.|++.++++.|+++|+++.++|+.+ +..+...|+..|+..+...++-+++...+||.. .| +...+..+..
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~- 181 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSK- 181 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCCh-
Confidence 46789999999999999999999999987 556677888889876555555544321334432 22 2222222211
Q ss_pred CCeEEEEeCCCccccCCC-CccceEEEc
Q 024759 229 GYRIIGNMGDQWCDLLGD-YPGHRTFKL 255 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~-~~g~r~fkL 255 (263)
.-+.+|||..+|+.++ ..|-+++-+
T Consensus 182 --~~~l~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 182 --DHTFVFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred --hHEEEEcCCHHHHHHHHHCCCEEEEE
Confidence 2367899999999875 345555544
No 29
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.72 E-value=1.8e-07 Score=81.73 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|++++++||.. +..+...|+..|+..+-..+...+....++|. ..|. ..++..|
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~----~~~~~~~ 162 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYL----NCAAKLG 162 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHH----HHHHHcC
Confidence 45788999999999999999999999976 55666788888887755555544332123332 2333 3333333
Q ss_pred C--eEEEEeCCCccccCCC-CccceEEEcCCC
Q 024759 230 Y--RIIGNMGDQWCDLLGD-YPGHRTFKLPNP 258 (263)
Q Consensus 230 y--~Iv~~iGDq~sDl~G~-~~g~r~fkLPNp 258 (263)
. .-+.+|||..+|+.++ ..|.+++-+|.|
T Consensus 163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CCHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 2 2378999999999976 567788777765
No 30
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.71 E-value=7.3e-08 Score=83.11 Aligned_cols=95 Identities=17% Similarity=0.102 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcc-hhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTT-QRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~G 229 (263)
..++.|++.+++++|+++|++++++||.. +..+...|+..|+..+...+.-.++....+| ...|+ +.+++.|
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~----~~~~~~~ 145 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVR----EALRLLD 145 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHH----HHHHHcC
Confidence 46789999999999999999999999987 4445677888888654333333322112233 22233 2222223
Q ss_pred C--eEEEEeCCCccccCCCC-ccceE
Q 024759 230 Y--RIIGNMGDQWCDLLGDY-PGHRT 252 (263)
Q Consensus 230 y--~Iv~~iGDq~sDl~G~~-~g~r~ 252 (263)
. .-+.+|||..+|+.++. .|.++
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeE
Confidence 2 23789999999998653 34443
No 31
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.70 E-value=1.3e-07 Score=90.33 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~G 229 (263)
..++.||+.++++.|+++|+++.++|+++ ++.+...|+..|+..|...++-.++...++|+. .|... ++..|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A----~~~lg 286 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYA----AQLLN 286 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHH----HHHcC
Confidence 45789999999999999999999999988 666778888899876655565554421234432 33322 22222
Q ss_pred C--eEEEEeCCCccccCCCC-ccceEEEcC
Q 024759 230 Y--RIIGNMGDQWCDLLGDY-PGHRTFKLP 256 (263)
Q Consensus 230 y--~Iv~~iGDq~sDl~G~~-~g~r~fkLP 256 (263)
. .-..+|||..+|+.++. .|-+++-+.
T Consensus 287 l~Peecl~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 287 FIPERCIVFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred CCcccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 2 23778999999999763 455555544
No 32
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.67 E-value=7.2e-08 Score=83.04 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
.++.|++.++++.|+++|+++.++|+.. +......|++.|+..+-..+.-.++....+|. ..|. +.+++-|.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~----~~~~~~~~ 156 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLL----LAAERLGV 156 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHH----HHHHHcCC
Confidence 5789999999999999999999999986 45566888888887644444443332123332 2233 22222221
Q ss_pred --eEEEEeCCCccccCCC-CccceEE
Q 024759 231 --RIIGNMGDQWCDLLGD-YPGHRTF 253 (263)
Q Consensus 231 --~Iv~~iGDq~sDl~G~-~~g~r~f 253 (263)
.-+.+|||..+|+.++ ..|-+++
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 2377899999999865 2344433
No 33
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.66 E-value=2.4e-07 Score=84.35 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
.++.|++.++++.|+++|++++++||.++. .....|...|+..+...+...+.....++. ..|+...+ ..|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~---~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~----~~g~ 172 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPER---FVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMK----MAGV 172 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHH---HHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHH----HhCC
Confidence 467899999999999999999999998743 445677777876644445544332122332 22332222 2222
Q ss_pred --eEEEEeCCCccccCCC-CccceEEEcC
Q 024759 231 --RIIGNMGDQWCDLLGD-YPGHRTFKLP 256 (263)
Q Consensus 231 --~Iv~~iGDq~sDl~G~-~~g~r~fkLP 256 (263)
.-+.+|||+.+|+.++ ..|.+++-++
T Consensus 173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~ 201 (272)
T PRK13223 173 PPSQSLFVGDSRSDVLAAKAAGVQCVALS 201 (272)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEEe
Confidence 2367899999999865 3455554443
No 34
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.66 E-value=2.4e-07 Score=84.03 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|+++.++|+.+ +..+...|+..|+..+-..++-.++...+||. ..|.... ++-|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~----~~l~ 179 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRP---RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAA----ERLG 179 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcC---HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHH----HHhC
Confidence 45789999999999999999999999987 45556778888887644445544432133443 2343222 2222
Q ss_pred Ce--EEEEeCCCccccCCCC-ccceEEEcC
Q 024759 230 YR--IIGNMGDQWCDLLGDY-PGHRTFKLP 256 (263)
Q Consensus 230 y~--Iv~~iGDq~sDl~G~~-~g~r~fkLP 256 (263)
.. -+.+|||..+|+.++. .|.+++-+.
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEe
Confidence 22 2778999999999763 466665554
No 35
>PRK11587 putative phosphatase; Provisional
Probab=98.65 E-value=1.9e-07 Score=81.58 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhh-HHHHHHHHh
Q 024759 150 GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHK-SAERRKLVE 227 (263)
Q Consensus 150 ~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yK-s~~R~~l~~ 227 (263)
...++.|++.++++.|+++|+++.++|+.+.. .+..-|...|+..++. ++-.+.....+|. ..|. ...+..+.
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~---~~~~~l~~~~l~~~~~-i~~~~~~~~~KP~p~~~~~~~~~~g~~- 154 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVP---VASARHKAAGLPAPEV-FVTAERVKRGKPEPDAYLLGAQLLGLA- 154 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCch---HHHHHHHhcCCCCccE-EEEHHHhcCCCCCcHHHHHHHHHcCCC-
Confidence 34678999999999999999999999998643 3456677788864443 3332221122332 2222 22222221
Q ss_pred cCCeEEEEeCCCccccCCCC-ccceEEEcC
Q 024759 228 SGYRIIGNMGDQWCDLLGDY-PGHRTFKLP 256 (263)
Q Consensus 228 ~Gy~Iv~~iGDq~sDl~G~~-~g~r~fkLP 256 (263)
-.-+.+|||...|+.++. .|-+++-+.
T Consensus 155 --p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 155 --PQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred --cccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 134788999999998753 455554443
No 36
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.64 E-value=3e-07 Score=79.78 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
...+.|++.++++.|+++|++++++||..+. .....|+..|+..+-..++..+.....++. ..|+...+ ++...
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~-~~~~~- 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTP---FVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACE-KLGLD- 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHH-HcCCC-
Confidence 4678999999999999999999999998754 334677888887654555544332112222 22222211 22111
Q ss_pred CeEEEEeCCCccccCCC
Q 024759 230 YRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~ 246 (263)
..-+.+|||..+|+.++
T Consensus 166 ~~~~i~igD~~~Di~~a 182 (226)
T PRK13222 166 PEEMLFVGDSRNDIQAA 182 (226)
T ss_pred hhheEEECCCHHHHHHH
Confidence 23467899999999865
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.62 E-value=2.2e-07 Score=72.80 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=49.7
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
++||+||||... ..++|++.++++.|+++|.+++|+||.+...++.-.+-|++
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh
Confidence 689999999853 35789999999999999999999999998889999999999
Q ss_pred cCCCC
Q 024759 193 VGYHS 197 (263)
Q Consensus 193 ~G~~~ 197 (263)
.||+.
T Consensus 54 ~Gi~~ 58 (101)
T PF13344_consen 54 LGIPV 58 (101)
T ss_dssp TTTT-
T ss_pred cCcCC
Confidence 99986
No 38
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.60 E-value=3.9e-07 Score=82.18 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcch-hhhhHHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQ-RAHKSAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~ 228 (263)
...+.|++.++++.|+++|+++.++||.+.. .+...|+..|+..+ ...++-.++....||. ..|. ..+++.
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~---~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~----~a~~~l 171 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTRE---MMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMAL----KNAIEL 171 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHH---HHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHH----HHHHHc
Confidence 4578999999999999999999999998854 44455555444332 2344433332123332 2232 233333
Q ss_pred CC---eEEEEeCCCccccCCCC-ccceEEEc
Q 024759 229 GY---RIIGNMGDQWCDLLGDY-PGHRTFKL 255 (263)
Q Consensus 229 Gy---~Iv~~iGDq~sDl~G~~-~g~r~fkL 255 (263)
|- .-+.+|||..+|+.++. .|-+++-+
T Consensus 172 ~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 172 GVYDVAACVKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred CCCCCcceEEEcCcHHHHHHHHHCCCEEEEE
Confidence 32 34789999999999763 45555443
No 39
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.57 E-value=2.4e-07 Score=77.91 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++.|+++|+++.++|++ ......|+..|+..+-..++-.+.....+|. ..|. ..+++.|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~----~~~~~~~ 156 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFL----LAAELLG 156 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHH----HHHHHcC
Confidence 3678999999999999999999999998 2245677788876544444443321022232 2232 2222222
Q ss_pred C--eEEEEeCCCccccCCCC-ccceEE
Q 024759 230 Y--RIIGNMGDQWCDLLGDY-PGHRTF 253 (263)
Q Consensus 230 y--~Iv~~iGDq~sDl~G~~-~g~r~f 253 (263)
. .-+.+|||...|+.++. .|-+++
T Consensus 157 ~~~~~~v~IgD~~~di~aA~~~G~~~i 183 (185)
T TIGR02009 157 VSPNECVVFEDALAGVQAARAAGMFAV 183 (185)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCeEe
Confidence 2 22568999999999764 455443
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.57 E-value=1.3e-07 Score=77.69 Aligned_cols=126 Identities=15% Similarity=0.243 Sum_probs=70.8
Q ss_pred EEEEecCCccccCchhhhh------cCCCcc--c------CC-------hHHHHHHHH-cCCCCCCHHHHHHHHHHHHCC
Q 024759 112 IWILDVDDSLITHVDFYAQ------NGFGTE--I------FD-------VTALINYLA-QGISPALPESLKLYRRLLRLG 169 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~------~~~g~~--~------y~-------~~~~~~wv~-~~~~paip~~l~l~~~l~~~G 169 (263)
+|+||+||||+++.+-+.. ..+|.. . .. ...|++... ....+..|++.++++.|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 5899999999998543210 111110 0 00 122333221 124466799999999999999
Q ss_pred CEEEEEcCCCcccHHHHHHHHHHcCCCC-cceeeeecCCCCCCcc-hhhhhHHHHHHHHhcCCe-EEEEeCCCccccCCC
Q 024759 170 FKIVLLTGRMEPSRNFTESNLKNVGYHS-WEKLILRETGEWNDTT-QRAHKSAERRKLVESGYR-IIGNMGDQWCDLLGD 246 (263)
Q Consensus 170 ~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~Gy~-Iv~~iGDq~sDl~G~ 246 (263)
+++.++|+++........+.+ +.. .+.++...+ . .++| ...|... +++.|.. -+.+|||...|+.++
T Consensus 81 ~~~~i~T~~~~~~~~~~~~~~----l~~~f~~i~~~~~-~-~~Kp~~~~~~~~----~~~~~~~~~~l~iGDs~~Di~aa 150 (154)
T TIGR01549 81 IKLGIISNGSLRAQKLLLRKH----LGDYFDLILGSDE-F-GAKPEPEIFLAA----LESLGLPPEVLHVGDNLNDIEGA 150 (154)
T ss_pred CeEEEEeCCchHHHHHHHHHH----HHhcCcEEEecCC-C-CCCcCHHHHHHH----HHHcCCCCCEEEEeCCHHHHHHH
Confidence 999999999865544333332 222 233444332 2 2333 2233322 2222221 367999999998765
Q ss_pred C
Q 024759 247 Y 247 (263)
Q Consensus 247 ~ 247 (263)
.
T Consensus 151 ~ 151 (154)
T TIGR01549 151 R 151 (154)
T ss_pred H
Confidence 3
No 41
>PRK09449 dUMP phosphatase; Provisional
Probab=98.56 E-value=3.9e-07 Score=79.40 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcchh-hhhHHHHHHHHhcC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQR-AHKSAERRKLVESG 229 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~G 229 (263)
.++.|++.++++.|+ +|+++.++||.. +..+...|+..|+..+ +.++...+.. ..||.. .|. ..+++.|
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~-~~KP~p~~~~----~~~~~~~ 164 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVG-VAKPDVAIFD----YALEQMG 164 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccC-CCCCCHHHHH----HHHHHcC
Confidence 568999999999999 689999999976 4455667888887653 4444433222 233432 333 3333333
Q ss_pred C---eEEEEeCCCc-cccCCC-CccceEEEcC
Q 024759 230 Y---RIIGNMGDQW-CDLLGD-YPGHRTFKLP 256 (263)
Q Consensus 230 y---~Iv~~iGDq~-sDl~G~-~~g~r~fkLP 256 (263)
- .-+.+|||.. +|+.++ ..|-+++-++
T Consensus 165 ~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 165 NPDRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 2 3588999998 799986 3566655543
No 42
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.55 E-value=7e-07 Score=75.91 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcch------hhhhHHHHH
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQ------RAHKSAERR 223 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~------~~yKs~~R~ 223 (263)
..++.|++.++++.|+++|++++++|+... ......|+..|+..+ ...+...... ..++. ..-|.+..+
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~---~~~~~~l~~~g~~~~~~~~~~~~~~g-~~~p~~~~~~~~~~k~~~~~ 153 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIM---CLAKKVAEKLNPDYVYSNELVFDEKG-FIQPDGIVRVTFDNKGEAVE 153 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhCCCeEEEEEEEEcCCC-eEecceeeEEccccHHHHHH
Confidence 457889999999999999999999999874 455566777787542 1222211110 00010 011322222
Q ss_pred HHH-hcC--CeEEEEeCCCccccCCCC-ccceEEEcCCC
Q 024759 224 KLV-ESG--YRIIGNMGDQWCDLLGDY-PGHRTFKLPNP 258 (263)
Q Consensus 224 ~l~-~~G--y~Iv~~iGDq~sDl~G~~-~g~r~fkLPNp 258 (263)
.+. ..| ..-+.+|||..+|+..+. .|.....=|+|
T Consensus 154 ~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 154 RLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 322 222 223789999999998654 34333333665
No 43
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.54 E-value=4.4e-07 Score=76.93 Aligned_cols=94 Identities=17% Similarity=0.064 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCC----Ccch-hhhhHHHHHHHH
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWN----DTTQ-RAHKSAERRKLV 226 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~----~~~~-~~yKs~~R~~l~ 226 (263)
.++.|++.++++.|+ .+++++|+.+ +......|+..|+..+-..+.-.++... .||. ..|... .+++.
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~---~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~-~~~~~ 155 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGD---RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKA-LREAG 155 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCC---HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHH-HHHhC
Confidence 457899999999986 4789999987 4456677888888764343443332212 1332 233322 22222
Q ss_pred hcCCeEEEEeCCCccccCCC-CccceEE
Q 024759 227 ESGYRIIGNMGDQWCDLLGD-YPGHRTF 253 (263)
Q Consensus 227 ~~Gy~Iv~~iGDq~sDl~G~-~~g~r~f 253 (263)
... .-+.+|||...|+.++ ..|-+++
T Consensus 156 ~~~-~~~l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 156 VDP-ERAIFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred CCc-cceEEEeCCHHHHHHHHHcCCEEe
Confidence 222 2356999999999875 3455554
No 44
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.54 E-value=1.7e-07 Score=78.40 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=63.9
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL 190 (263)
++++|||||||+++..++...+---..+ -+.+. ..+++|+++|++++++||++.. .+...|
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~---------------~~~~~-~~i~~Lk~~G~~i~IvTn~~~~---~~~~~l 62 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAF---------------NVRDG-YGIRCALKSGIEVAIITGRKAK---LVEDRC 62 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEE---------------echhH-HHHHHHHHCCCEEEEEECCCCH---HHHHHH
Confidence 5899999999999766553221000000 01111 1689999999999999999853 556788
Q ss_pred HHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC
Q 024759 191 KNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 191 ~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~ 246 (263)
++.|++.+ + ... .+++. .++ ...+++. ....-+.+|||..+|+...
T Consensus 63 ~~~gi~~~---~-~~~---~~k~~-~~~-~~~~~~~-~~~~~~~~vGDs~~D~~~~ 108 (154)
T TIGR01670 63 KTLGITHL---Y-QGQ---SNKLI-AFS-DILEKLA-LAPENVAYIGDDLIDWPVM 108 (154)
T ss_pred HHcCCCEE---E-ecc---cchHH-HHH-HHHHHcC-CCHHHEEEECCCHHHHHHH
Confidence 89898742 2 221 12211 121 1111111 1123588999999999864
No 45
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.52 E-value=4.8e-07 Score=77.43 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=70.8
Q ss_pred cCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCE--EEEEcCCCcccH
Q 024759 106 AGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFK--IVLLTGRMEPSR 183 (263)
Q Consensus 106 ~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~--I~~iTgR~e~~r 183 (263)
...|.+++|||.|+||... + ....-|+..+.++++++.+.. |+++||......
T Consensus 37 k~~Gik~li~DkDNTL~~~--~-----------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~ 91 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPP--Y-----------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD 91 (168)
T ss_pred hhcCceEEEEcCCCCCCCC--C-----------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc
Confidence 3478899999999999864 1 234558899999999999875 999999742111
Q ss_pred ---HHHHHHH-HHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhc----CCeEEEEeCCCc-cccCCCCc-cceEE
Q 024759 184 ---NFTESNL-KNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVES----GYRIIGNMGDQW-CDLLGDYP-GHRTF 253 (263)
Q Consensus 184 ---~~T~~nL-~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~----Gy~Iv~~iGDq~-sDl~G~~~-g~r~f 253 (263)
..-++.+ +..|++. +|-. ..|| .. ..+..+.+... ...-+++||||+ +|+.+++. |..++
T Consensus 92 d~~~~~a~~~~~~lgIpv-----l~h~---~kKP-~~-~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~ti 161 (168)
T PF09419_consen 92 DPDGERAEALEKALGIPV-----LRHR---AKKP-GC-FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTI 161 (168)
T ss_pred CccHHHHHHHHHhhCCcE-----EEeC---CCCC-cc-HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEE
Confidence 1112222 3447773 2211 1222 11 12333333322 255699999999 99998863 54555
Q ss_pred Ec
Q 024759 254 KL 255 (263)
Q Consensus 254 kL 255 (263)
..
T Consensus 162 lv 163 (168)
T PF09419_consen 162 LV 163 (168)
T ss_pred EE
Confidence 43
No 46
>PLN02954 phosphoserine phosphatase
Probab=98.51 E-value=1.5e-06 Score=75.66 Aligned_cols=137 Identities=19% Similarity=0.333 Sum_probs=78.9
Q ss_pred CCcEEEEecCCccccCchhhh-hcCCCcc---------------cCC-------------hHHHHHHHHcCCCCCCHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYA-QNGFGTE---------------IFD-------------VTALINYLAQGISPALPESL 159 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~-~~~~g~~---------------~y~-------------~~~~~~wv~~~~~paip~~l 159 (263)
.+++|+||.||||.+...... ...+|.. ++. .+...++.........|++.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 478999999999997533221 1112211 110 01233333333345789999
Q ss_pred HHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC---cc-eeeeecCC------CCCCcchhhhhHHHHHHH-Hhc
Q 024759 160 KLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS---WE-KLILRETG------EWNDTTQRAHKSAERRKL-VES 228 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~---~~-~Lilr~~~------~~~~~~~~~yKs~~R~~l-~~~ 228 (263)
++++.|+++|++++++|+.. +..+...|+..|++. +. .+....++ .........-|...-+++ +..
T Consensus 91 e~l~~l~~~g~~~~IvS~~~---~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~ 167 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGF---RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKH 167 (224)
T ss_pred HHHHHHHHCCCEEEEECCCc---HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHc
Confidence 99999999999999999988 445566777888862 11 11111110 000000111244333333 334
Q ss_pred CCeEEEEeCCCccccCCCCc
Q 024759 229 GYRIIGNMGDQWCDLLGDYP 248 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~~~ 248 (263)
|+.-+.+|||..+|+.++..
T Consensus 168 ~~~~~i~iGDs~~Di~aa~~ 187 (224)
T PLN02954 168 GYKTMVMIGDGATDLEARKP 187 (224)
T ss_pred CCCceEEEeCCHHHHHhhhc
Confidence 55557789999999998654
No 47
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.51 E-value=8e-07 Score=86.53 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCC-CCcchhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEW-NDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~-~~~~~~~yKs~~R~~l~~~G 229 (263)
..++.|++.+++++|+++|+++.++|+.+ +..+.+.|+..|+..|-..++-.++.. .++|+ .|... +++-+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~-~~~~a----l~~l~ 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSD-LVKSI----LNKYD 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcH-HHHHH----HHhcC
Confidence 45788999999999999999999999987 556667788889876545555544321 13333 33322 22223
Q ss_pred CeEEEEeCCCccccCCCC-ccceEEEc
Q 024759 230 YRIIGNMGDQWCDLLGDY-PGHRTFKL 255 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~~-~g~r~fkL 255 (263)
..-+.+|||..+|+.++. .|-+++-+
T Consensus 400 ~~~~v~VGDs~~Di~aAk~AG~~~I~v 426 (459)
T PRK06698 400 IKEAAVVGDRLSDINAAKDNGLIAIGC 426 (459)
T ss_pred cceEEEEeCCHHHHHHHHHCCCeEEEE
Confidence 345899999999998753 44455444
No 48
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.50 E-value=2.2e-06 Score=71.94 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCC-----------C-----Ccch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEW-----------N-----DTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~-----------~-----~~~~ 214 (263)
..++.|++.++++.|+++|++++++|+... ......|+..|+..+..-+.-.+..+ . ..+.
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGND---FFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcH---HHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 367889999999999999999999999874 34445667777764322222111100 0 0112
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCCCCccce
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLGDYPGHR 251 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~~g~r 251 (263)
...|.+.-+++..+-+.-+.+|||..+|+.++.....
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~ 183 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDV 183 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCc
Confidence 2346665556554315568899999999998754333
No 49
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.50 E-value=7.2e-07 Score=76.41 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=74.7
Q ss_pred CcEEEEecCCccccCch----hhhhcCCCccc----------------C--ChHH----HHHHHHc---CCCCCCHHHHH
Q 024759 110 KDIWILDVDDSLITHVD----FYAQNGFGTEI----------------F--DVTA----LINYLAQ---GISPALPESLK 160 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~----y~~~~~~g~~~----------------y--~~~~----~~~wv~~---~~~paip~~l~ 160 (263)
.++||||+||||++..+ ...++++..+. + +++. +..|... ...++.|++.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 36899999999999654 22222221010 1 1111 2222211 34568999999
Q ss_pred HHHHHHHCCCEEEEEcCCCcccHHHHHH--HHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCC
Q 024759 161 LYRRLLRLGFKIVLLTGRMEPSRNFTES--NLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGD 238 (263)
Q Consensus 161 l~~~l~~~G~~I~~iTgR~e~~r~~T~~--nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGD 238 (263)
++++|++++ .++++|+.+........+ +|.......++..+.... . .+++ ..|+ ..+++.|-..+.+|||
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~-~-~~kp-~~~~----~a~~~~~~~~~v~vgD 153 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH-D-ESKE-KLFI----KAKEKYGDRVVCFVDD 153 (197)
T ss_pred HHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc-C-cccH-HHHH----HHHHHhCCCcEEEeCC
Confidence 999999975 578888876543332222 223222112233333322 2 2332 2232 2333334457889999
Q ss_pred CccccCCCC-c--cceEEEc
Q 024759 239 QWCDLLGDY-P--GHRTFKL 255 (263)
Q Consensus 239 q~sDl~G~~-~--g~r~fkL 255 (263)
+.+|+.++. . |.+++-.
T Consensus 154 s~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 154 LAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred CHHHHHHHHHHHcCCcEEEe
Confidence 999998763 3 5555544
No 50
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.50 E-value=1.1e-06 Score=80.71 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHc---CCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHh
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNV---GYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVE 227 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~---G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~ 227 (263)
.+++|++.++++.|+++|+++.++||.+..... ..|+.. ++......+ .+++....+|.. .|... +..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~---~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a----~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVS---KIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLA----AET 214 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHH---HHHHHhccccccCceEEE-eccccCCCCCCHHHHHHH----HHH
Confidence 478999999999999999999999997644333 333333 222222233 232211234433 23322 222
Q ss_pred cCCe--EEEEeCCCccccCCC-CccceEEEcCC
Q 024759 228 SGYR--IIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 228 ~Gy~--Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
.|.. -+.+|||.++|+.++ ..|-+++-.++
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEEEEcc
Confidence 2222 277899999999976 34666665544
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.49 E-value=2.5e-07 Score=78.63 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=72.1
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc--------
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS-------- 182 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~-------- 182 (263)
++++||.||||....+|-. .++ ...+.|++.+++++|+++|++++++||-+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~------------~~~------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~ 63 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVH------------EID------NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQ 63 (176)
T ss_pred CEEEEeCCCCEeCCCCCCC------------CHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHH
Confidence 5899999999996433310 111 23577999999999999999999999987421
Q ss_pred ----HHHHHHHHHHcCCCCcceeeeecC----------CCCCCcc-hhhhhHHHHH-HHHhcCCeEEEEeCCCccccCCC
Q 024759 183 ----RNFTESNLKNVGYHSWEKLILRET----------GEWNDTT-QRAHKSAERR-KLVESGYRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 183 ----r~~T~~nL~~~G~~~~~~Lilr~~----------~~~~~~~-~~~yKs~~R~-~l~~~Gy~Iv~~iGDq~sDl~G~ 246 (263)
++.....|.+.|+. .+.++.... ....+|| ...|+...++ .+.. .-..+|||+++|+.++
T Consensus 64 ~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~---~~~v~VGDs~~Di~aA 139 (176)
T TIGR00213 64 FEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDM---AQSYMVGDKLEDMQAG 139 (176)
T ss_pred HHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcCh---hhEEEEcCCHHHHHHH
Confidence 23333456677776 344443221 1101233 2334433322 2211 2256899999999875
Q ss_pred -CccceE
Q 024759 247 -YPGHRT 252 (263)
Q Consensus 247 -~~g~r~ 252 (263)
..|-++
T Consensus 140 ~~aG~~~ 146 (176)
T TIGR00213 140 VAAKVKT 146 (176)
T ss_pred HHCCCcE
Confidence 344444
No 52
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.49 E-value=2.1e-07 Score=80.11 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=76.2
Q ss_pred EEEecCCccccCchhhh---hcCCCccc------CC-hHHHHHH--------------HHc----CCCCCCHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYA---QNGFGTEI------FD-VTALINY--------------LAQ----GISPALPESLKLYRR 164 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~---~~~~g~~~------y~-~~~~~~w--------------v~~----~~~paip~~l~l~~~ 164 (263)
|.+||||||.+..+.+. +..|+..+ +. ...+..| ... ...+|+||+++.+++
T Consensus 5 I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~~ 84 (191)
T PF06941_consen 5 IAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALKK 84 (191)
T ss_dssp EEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHHH
T ss_pred EEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHHH
Confidence 89999999998654432 22344431 11 0112222 111 367999999999999
Q ss_pred HHHCCCEEEEEcCCCcc----cHHHHHHHHHHc--CCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCC
Q 024759 165 LLRLGFKIVLLTGRMEP----SRNFTESNLKNV--GYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGD 238 (263)
Q Consensus 165 l~~~G~~I~~iTgR~e~----~r~~T~~nL~~~--G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGD 238 (263)
|.+.|+.++|||+|+.. ..+.|.+||+++ +++ ++.+++... |.. + +.. ..|+|
T Consensus 85 L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~-----------K~~----v---~~D--vlIDD 143 (191)
T PF06941_consen 85 LRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD-----------KTL----V---GGD--VLIDD 143 (191)
T ss_dssp HHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS-----------GGG----C-----S--EEEES
T ss_pred HHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCc-hheEEEecC-----------CCe----E---ecc--EEecC
Confidence 99999999999999865 578999999999 333 577887532 211 1 112 47899
Q ss_pred CccccCC-CCccceEEEcCCC
Q 024759 239 QWCDLLG-DYPGHRTFKLPNP 258 (263)
Q Consensus 239 q~sDl~G-~~~g~r~fkLPNp 258 (263)
+..-+.. ...|..++.+..|
T Consensus 144 ~~~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 144 RPHNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp SSHHHSS-SSESSEEEEE--G
T ss_pred ChHHHHhccCCCceEEEEcCC
Confidence 8865553 2346666766654
No 53
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.47 E-value=1.2e-07 Score=77.56 Aligned_cols=98 Identities=20% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC-cceeeeecCCCCCCcc-hhhhhHHHHHHHHh
Q 024759 150 GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS-WEKLILRETGEWNDTT-QRAHKSAERRKLVE 227 (263)
Q Consensus 150 ~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~ 227 (263)
...++.|++.++++.|+++|++++++|+.+ +......|+..|+.. ++.++...+.. ..+| ...|+...++ +.-
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~~~~-~~Kp~~~~~~~~~~~-~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSDDVG-SRKPDPDAYRRALEK-LGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGGGSS-SSTTSHHHHHHHHHH-HTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCC---cccccccccccccccccccccccchhh-hhhhHHHHHHHHHHH-cCC
Confidence 567899999999999999999999999997 445557777777764 35555544332 2333 3334433322 211
Q ss_pred cCCeEEEEeCCCccccCCCC-ccceEE
Q 024759 228 SGYRIIGNMGDQWCDLLGDY-PGHRTF 253 (263)
Q Consensus 228 ~Gy~Iv~~iGDq~sDl~G~~-~g~r~f 253 (263)
. -.-+.+|||...|+.++. .|-+++
T Consensus 149 ~-p~~~~~vgD~~~d~~~A~~~G~~~i 174 (176)
T PF13419_consen 149 P-PEEILFVGDSPSDVEAAKEAGIKTI 174 (176)
T ss_dssp S-GGGEEEEESSHHHHHHHHHTTSEEE
T ss_pred C-cceEEEEeCCHHHHHHHHHcCCeEE
Confidence 1 124789999999998753 455543
No 54
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.47 E-value=5.4e-07 Score=76.25 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=77.1
Q ss_pred cEEEEecCCccccCch--hhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcc-------
Q 024759 111 DIWILDVDDSLITHVD--FYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEP------- 181 (263)
Q Consensus 111 ~avVfDIDeTll~n~~--y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~------- 181 (263)
++++||.||||..+.+ |+... . ..-++.|++.+++++|+++|++++++|+.+..
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~------------~-----~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~ 64 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDA------------L-----EKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQ 64 (161)
T ss_pred CEEEEeCCCCccccCCCccccCC------------H-----HHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCH
Confidence 6899999999998532 22110 0 02367899999999999999999999996421
Q ss_pred -----cHHHHHHHHHHcCCCCcceeeeec----CCCCCCcc-hhhhhHHHHHHHHhcCC--eEEEEeCCCccccCCC-Cc
Q 024759 182 -----SRNFTESNLKNVGYHSWEKLILRE----TGEWNDTT-QRAHKSAERRKLVESGY--RIIGNMGDQWCDLLGD-YP 248 (263)
Q Consensus 182 -----~r~~T~~nL~~~G~~~~~~Lilr~----~~~~~~~~-~~~yKs~~R~~l~~~Gy--~Iv~~iGDq~sDl~G~-~~ 248 (263)
......+-|+.+|+. ++..+.-+ +.....+| ...+.... +..|- .-..+|||+++|+.++ ..
T Consensus 65 ~~~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~~~~~~~~----~~~~~~~~e~l~IGD~~~Di~~A~~a 139 (161)
T TIGR01261 65 ADFDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKIKLLEPYL----KKNLIDKARSYVIGDRETDMQLAENL 139 (161)
T ss_pred HHHHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCHHHHHHHH----HHcCCCHHHeEEEeCCHHHHHHHHHC
Confidence 234455668899997 45565531 22112233 22222221 22222 2378999999999976 34
Q ss_pred cceEEEc
Q 024759 249 GHRTFKL 255 (263)
Q Consensus 249 g~r~fkL 255 (263)
|-.++-+
T Consensus 140 Gi~~i~~ 146 (161)
T TIGR01261 140 GIRGIQY 146 (161)
T ss_pred CCeEEEE
Confidence 5555543
No 55
>PLN02940 riboflavin kinase
Probab=98.47 E-value=9.4e-07 Score=84.43 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH-HcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK-NVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~-~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~ 228 (263)
...+.|++.++++.|+++|+++.++||.+ +..+...|+ ..|+..+-..++-.++...++|.. .|....+ ++.-.
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAK-RLNVE 166 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHH-HcCCC
Confidence 45688999999999999999999999987 334455665 567765545555544321233322 2332222 11111
Q ss_pred CCeEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 229 GYRIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
-.-+.+|||..+|+.++ ..|-+++-++.
T Consensus 167 -p~~~l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 167 -PSNCLVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred -hhHEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence 12367899999999876 45777776654
No 56
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.45 E-value=9.4e-07 Score=73.77 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~Gy 230 (263)
.++.|++.++++.|+++|++++++|+.+... . ..+.+.|+..+-..++-..+...++|. ..|+...+ ++... .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~---~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~-~~~~~-~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-A---VLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALK-KLGLK-P 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-H---HHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHH-HcCCC-c
Confidence 5788999999999999999999999988544 2 233336765433333332221123333 34443322 22111 2
Q ss_pred eEEEEeCCCccccCCCC-ccceEE
Q 024759 231 RIIGNMGDQWCDLLGDY-PGHRTF 253 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G~~-~g~r~f 253 (263)
.-+.+|||...|+.++. .|-+++
T Consensus 158 ~~~~~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 158 EECLFVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred ceEEEEcCCHHHHHHHHHcCCEEE
Confidence 34778999999998753 555544
No 57
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.45 E-value=9.1e-07 Score=79.93 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=54.0
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL 190 (263)
+.++||+||||+... .. ...++|++.++++.|+++|.+++|+|||+...++...+.|
T Consensus 2 k~i~~D~DGtl~~~~------~~-----------------~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISD------AK-----------------SGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCC------Cc-----------------ccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 479999999998641 00 0127899999999999999999999999988888889999
Q ss_pred HHcCCCC
Q 024759 191 KNVGYHS 197 (263)
Q Consensus 191 ~~~G~~~ 197 (263)
++.|++.
T Consensus 59 ~~~g~~~ 65 (257)
T TIGR01458 59 QRLGFDI 65 (257)
T ss_pred HHcCCCC
Confidence 9999975
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.43 E-value=5.3e-07 Score=76.55 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=72.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccH------
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSR------ 183 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r------ 183 (263)
.+.++||+||||+.+.... .+ +.+++.|. .+.|++.++++.|+++|++++++|+.+...|
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~~--------~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~ 78 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK---VF---PTSASDWR--------FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAE 78 (166)
T ss_pred CcEEEEeCCCceEecCCCC---cc---cCChHHeE--------EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHH
Confidence 4689999999999742100 00 11233221 2569999999999999999999999775321
Q ss_pred ---HHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC----CeEEEEeCCCc--------cccCCCC
Q 024759 184 ---NFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG----YRIIGNMGDQW--------CDLLGDY 247 (263)
Q Consensus 184 ---~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G----y~Iv~~iGDq~--------sDl~G~~ 247 (263)
+.+.+.|+..|.+. +..+.-.... .++|. ..++.. ++..| -.-..+|||+. +|+.++.
T Consensus 79 ~~~~~i~~~l~~~gl~~-~~ii~~~~~~-~~KP~p~~~~~~----~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~ 152 (166)
T TIGR01664 79 SFKNKIEAFLEKLKVPI-QVLAATHAGL-YRKPMTGMWEYL----QSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAK 152 (166)
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCC-CCCCccHHHHHH----HHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHH
Confidence 24567889999864 3333322222 23332 233322 22222 23488999997 5998763
No 59
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.42 E-value=7.9e-07 Score=75.68 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=74.2
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc-------
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS------- 182 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~------- 182 (263)
.++++||.||||..+...+.. .++ ...++|++.+++++|+++|+++.++|+.+...
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~-----------~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~ 65 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVK-----------SPD------EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEA 65 (181)
T ss_pred ccEEEEECCCCcccCCccccC-----------CHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHH
Confidence 468999999999877533311 111 23578999999999999999999999986311
Q ss_pred -----HHHHHHHHHHcCCCCcceeeeecC----CCCCCcch-hhhhHHHHHHHHhcCCeEEEEeCCCccccCCCC-ccce
Q 024759 183 -----RNFTESNLKNVGYHSWEKLILRET----GEWNDTTQ-RAHKSAERRKLVESGYRIIGNMGDQWCDLLGDY-PGHR 251 (263)
Q Consensus 183 -----r~~T~~nL~~~G~~~~~~Lilr~~----~~~~~~~~-~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~-~g~r 251 (263)
++.....|++.|+. ++..+.... .....+|. ..|....+ .+.-. ..-+.+|||..+|+.++. .|-+
T Consensus 66 ~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~-~l~~~-~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 66 QLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGMLLSIAE-RLNID-LAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHHHHHHH-HcCCC-hhhEEEEeCCHHHHHHHHHCCCe
Confidence 12334456677874 355554321 11023332 23332222 22111 223778999999998753 3444
Q ss_pred EE
Q 024759 252 TF 253 (263)
Q Consensus 252 ~f 253 (263)
++
T Consensus 143 ~i 144 (181)
T PRK08942 143 PV 144 (181)
T ss_pred EE
Confidence 33
No 60
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.42 E-value=7.2e-07 Score=78.86 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcc--hhhhhHHHHHHHHh
Q 024759 150 GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTT--QRAHKSAERRKLVE 227 (263)
Q Consensus 150 ~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~--~~~yKs~~R~~l~~ 227 (263)
...+++||+.++++.|+++|+.+...|+.+ +..+...|...|+..+-..++-+++..++|| +.-.+..+|..+..
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~---~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSP---RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCCh---HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 356899999999999999999999999987 6677788888887765444444433224444 44344444433332
Q ss_pred cCCeEEEEeCCCccccCCC-CccceEEEcCCC
Q 024759 228 SGYRIIGNMGDQWCDLLGD-YPGHRTFKLPNP 258 (263)
Q Consensus 228 ~Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPNp 258 (263)
+ -..+|.|.++.+.++ ..|-++|-+||+
T Consensus 160 ~---~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 160 E---ECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred H---HeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 2 367899999999876 468999999983
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.41 E-value=1.3e-06 Score=75.02 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=57.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc--eeeeecCCCCC--CcchhhhhHHHHHHHH
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE--KLILRETGEWN--DTTQRAHKSAERRKLV 226 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~--~Lilr~~~~~~--~~~~~~yKs~~R~~l~ 226 (263)
..++.|++.++++.|+++ ++++++|+.. +..+...|++.|++.+. .+....++... ..+...-|....+++.
T Consensus 66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~ 141 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRER-FQVVILSDTF---YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK 141 (205)
T ss_pred hCCCCCCHHHHHHHHHhc-CCEEEEeCCc---HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence 456789999999999999 9999999988 45666788888987531 12221111000 0011123555555555
Q ss_pred hcCCeEEEEeCCCccccC
Q 024759 227 ESGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 227 ~~Gy~Iv~~iGDq~sDl~ 244 (263)
..+ .-+.+|||..+|+.
T Consensus 142 ~~~-~~~v~iGDs~~D~~ 158 (205)
T PRK13582 142 SLG-YRVIAAGDSYNDTT 158 (205)
T ss_pred HhC-CeEEEEeCCHHHHH
Confidence 444 45789999999984
No 62
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.40 E-value=1e-06 Score=75.64 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhcCC-
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVESGY- 230 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~Gy- 230 (263)
.+.|++.+++++|+++|++++++||-+.. ....|+..|+..+-..+.-..+....||.. .|. ..++..|.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~----~~~~~~~~~ 176 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQ----EALERAGIS 176 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHH----HHHHHcCCC
Confidence 57899999999999999999999996532 346688888765333333332221233332 333 22333232
Q ss_pred -eEEEEeCCCc-cccCCCC-ccceE
Q 024759 231 -RIIGNMGDQW-CDLLGDY-PGHRT 252 (263)
Q Consensus 231 -~Iv~~iGDq~-sDl~G~~-~g~r~ 252 (263)
.-+.+|||++ +|+.++. .|-++
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCee
Confidence 2378999998 8998763 45443
No 63
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.39 E-value=1.1e-06 Score=75.81 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH-cCCCC-cceeeeecCCCCCCcc-hhhhhHHHHHHHHhc
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN-VGYHS-WEKLILRETGEWNDTT-QRAHKSAERRKLVES 228 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~-~G~~~-~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~ 228 (263)
.++.|+++++++.|+++|++++++|+.+.... ..++.. .|+.. .+.++...+-. .+|| ...|+...+ ++.-
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~---~~~~~~~~~l~~~fd~v~~s~~~~-~~KP~p~~~~~~~~-~~~~- 156 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHT---TFWPEEYPEVRAAADHIYLSQDLG-MRKPEARIYQHVLQ-AEGF- 156 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhH---HHHHhhchhHHHhcCEEEEecccC-CCCCCHHHHHHHHH-HcCC-
Confidence 35789999999999999999999999874432 233332 13332 23444433322 3344 334443322 2211
Q ss_pred CCeEEEEeCCCccccCCC-CccceEEEcCCC
Q 024759 229 GYRIIGNMGDQWCDLLGD-YPGHRTFKLPNP 258 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPNp 258 (263)
.-.-+.+|||...|+.++ ..|-+++.++++
T Consensus 157 ~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 157 SAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred ChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 112377999999999876 467888877775
No 64
>PRK10444 UMP phosphatase; Provisional
Probab=98.39 E-value=1.9e-06 Score=77.74 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=56.4
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL 190 (263)
+.++||+||||+.. . .++|++.++++.|+++|.+++|+|||+...+....+.|
T Consensus 2 ~~v~~DlDGtL~~~--------------------------~-~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHD--------------------------N-VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeC--------------------------C-eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 58999999999875 2 56899999999999999999999999988888899999
Q ss_pred HHcCCCCcceeee
Q 024759 191 KNVGYHSWEKLIL 203 (263)
Q Consensus 191 ~~~G~~~~~~Lil 203 (263)
++.||+.-.+-++
T Consensus 55 ~~~G~~~~~~~i~ 67 (248)
T PRK10444 55 ATAGVDVPDSVFY 67 (248)
T ss_pred HHcCCCCCHhhEe
Confidence 9999965333333
No 65
>PLN02645 phosphoglycolate phosphatase
Probab=98.37 E-value=8.2e-07 Score=82.35 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=55.5
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
..++++|||||||+.. . .++|++.+++++|+++|.+++|+|||+...+....+
T Consensus 27 ~~~~~~~D~DGtl~~~--------------------------~-~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~ 79 (311)
T PLN02645 27 SVETFIFDCDGVIWKG--------------------------D-KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK 79 (311)
T ss_pred hCCEEEEeCcCCeEeC--------------------------C-ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 4679999999999875 1 357999999999999999999999999888888889
Q ss_pred HHHHcCCCCc
Q 024759 189 NLKNVGYHSW 198 (263)
Q Consensus 189 nL~~~G~~~~ 198 (263)
.|++.||+..
T Consensus 80 ~l~~lGi~~~ 89 (311)
T PLN02645 80 KFESLGLNVT 89 (311)
T ss_pred HHHHCCCCCC
Confidence 9999999763
No 66
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.36 E-value=1.8e-06 Score=74.90 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
..++.|++.++++.|+++|++++++||-. +......|++.|+..
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~ 126 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDA 126 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCc
Confidence 45688999999999999999999999976 444456667778865
No 67
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.36 E-value=8.9e-07 Score=76.02 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=64.2
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
+.+.++|||||||+++.-|....+-....|+. .. -.-++.|+++|++++++|||+. ..+..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~----------~d------~~~i~~L~~~Gi~v~I~T~~~~---~~v~~ 80 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNV----------RD------GYGIRCLLTSGIEVAIITGRKS---KLVED 80 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEec----------cc------hHHHHHHHHCCCEEEEEeCCCc---HHHHH
Confidence 58899999999999874333221111111110 00 1245677789999999999974 45567
Q ss_pred HHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC--CeEEEEeCCCccccCCCC
Q 024759 189 NLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG--YRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G--y~Iv~~iGDq~sDl~G~~ 247 (263)
-|++.|+..+ +.... .++ ...++.+++.| ..-+++|||+.+|+....
T Consensus 81 ~l~~lgl~~~----f~g~~---~k~-----~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~ 129 (183)
T PRK09484 81 RMTTLGITHL----YQGQS---NKL-----IAFSDLLEKLAIAPEQVAYIGDDLIDWPVME 129 (183)
T ss_pred HHHHcCCcee----ecCCC---cHH-----HHHHHHHHHhCCCHHHEEEECCCHHHHHHHH
Confidence 7888888642 22221 211 12222333323 235899999999998653
No 68
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.29 E-value=3.3e-06 Score=73.93 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCccee-----eeecCCCCCCcchh----------
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKL-----ILRETGEWNDTTQR---------- 215 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~L-----ilr~~~~~~~~~~~---------- 215 (263)
..++.|++.++++.|+++|++++++|+... ......|++. ++. +.+ .+.++.-...++..
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~-~~~-~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~ 146 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMD---FFVYPLLQGL-IPK-EQIYCNGSDFSGEYITITWPHPCDEHCQNHCG 146 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcH---HHHHHHHHHh-CCc-CcEEEeEEEecCCeeEEeccCCccccccccCC
Confidence 467899999999999999999999999874 4455566655 432 112 12211100001100
Q ss_pred hhhHHHHHHHHhcCCeEEEEeCCCccccCCCC
Q 024759 216 AHKSAERRKLVESGYRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 216 ~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~ 247 (263)
.-|...-+++.....+ +.+|||..+|+..+.
T Consensus 147 ~~K~~~l~~~~~~~~~-~i~iGDs~~Di~aa~ 177 (219)
T PRK09552 147 CCKPSLIRKLSDTNDF-HIVIGDSITDLEAAK 177 (219)
T ss_pred CchHHHHHHhccCCCC-EEEEeCCHHHHHHHH
Confidence 1254444444444343 668899999998764
No 69
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.28 E-value=3e-06 Score=68.73 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCC-CcccHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGR-MEPSRNFTESN 189 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR-~e~~r~~T~~n 189 (263)
++++||+||||+...--. + + -++. +. ..++.|++.++++.|+++|++++++|++ .+. .+..-
T Consensus 1 kli~~DlD~Tl~~~~~~~--~--~---~~~~-----~~--~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~---~~~~~ 63 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIV--V--G---EDPI-----ID--LEVTIKEIRDKLQTLKKNGFLLALASYNDDPH---VAYEL 63 (128)
T ss_pred CEEEEeCCCCCCCCCccc--c--c---CCcc-----hh--hHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHH---HHHHH
Confidence 478999999999651000 0 0 0000 00 0157899999999999999999999999 533 33344
Q ss_pred HHHcC
Q 024759 190 LKNVG 194 (263)
Q Consensus 190 L~~~G 194 (263)
|+..|
T Consensus 64 l~~~~ 68 (128)
T TIGR01681 64 LKIFE 68 (128)
T ss_pred HHhcc
Confidence 55555
No 70
>PRK06769 hypothetical protein; Validated
Probab=98.27 E-value=3.5e-06 Score=71.68 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc-----H
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS-----R 183 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~-----r 183 (263)
+..+++||.||||--. +++ .......+.|++.+++++|+++|++++++|+.++.. .
T Consensus 3 ~~~~~~~d~d~~~~~~-~~~------------------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~ 63 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TTI------------------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATI 63 (173)
T ss_pred CCcEEEEeCCCcccCC-CCC------------------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCH
Confidence 5679999999999422 010 001134678999999999999999999999976421 1
Q ss_pred HHHHHHHHHcCCCCcceeeee----cCCCCCCcc-hhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC
Q 024759 184 NFTESNLKNVGYHSWEKLILR----ETGEWNDTT-QRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 184 ~~T~~nL~~~G~~~~~~Lilr----~~~~~~~~~-~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~ 246 (263)
..+..-|+..|+.. .+.- +++....+| ...|+...++ +.. .-.-+.+|||++.|+.++
T Consensus 64 ~~~~~~l~~~g~~~---~~~~~~~~~~~~~~~KP~p~~~~~~~~~-l~~-~p~~~i~IGD~~~Di~aA 126 (173)
T PRK06769 64 ADFVQELKGFGFDD---IYLCPHKHGDGCECRKPSTGMLLQAAEK-HGL-DLTQCAVIGDRWTDIVAA 126 (173)
T ss_pred HHHHHHHHhCCcCE---EEECcCCCCCCCCCCCCCHHHHHHHHHH-cCC-CHHHeEEEcCCHHHHHHH
Confidence 23445588888754 2321 111102333 2344433332 110 112388999999999975
No 71
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.26 E-value=2e-06 Score=78.34 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=53.5
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.++++|||||||+.. ..++|++.+++++|+++|.+++++|||+...+....+.
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~ 54 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALK 54 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 468999999999764 24678999999999999999999999998888888889
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
|++.|++.
T Consensus 55 l~~~G~~~ 62 (279)
T TIGR01452 55 FARLGFNG 62 (279)
T ss_pred HHHcCCCC
Confidence 99999975
No 72
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.24 E-value=4.9e-06 Score=71.92 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC-cceeeeecCCCCCCcc-hhhhhHHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS-WEKLILRETGEWNDTT-QRAHKSAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~ 228 (263)
..++.|+++++++.|+++|++++++|+....... ....+...|+.. ++.++...+.. ..|| ...|+...++ +.-.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~-~~KP~p~~~~~~~~~-~g~~ 168 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEG-LRKPDPRIYQLMLER-LGVA 168 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecC-CCCCCHHHHHHHHHH-cCCC
Confidence 3567899999999999999999999997643321 222333344422 34444332211 2333 3344433222 1111
Q ss_pred CCeEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 229 GYRIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
-.-+.+|||...|+.++ ..|-+++.+.+
T Consensus 169 -~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 169 -PEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred -HHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 11256679999999876 46777776654
No 73
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.24 E-value=6.7e-06 Score=73.25 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
+..++++||+|||+... ..++|++.+++++|+++|.+++++||.+.. +....
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~ 57 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLH 57 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHH
Confidence 45679999999999864 246899999999999999999999996543 33334
Q ss_pred HHHHHcCCCC-cceeeeecCCCCCCcchhhhhHHHHHHHHhcCC--eEEEEeCCCccccC
Q 024759 188 SNLKNVGYHS-WEKLILRETGEWNDTTQRAHKSAERRKLVESGY--RIIGNMGDQWCDLL 244 (263)
Q Consensus 188 ~nL~~~G~~~-~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy--~Iv~~iGDq~sDl~ 244 (263)
+-|++.|++. +...++.+... . ....++.+++.|. +-+.++||...|+.
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~-----~---~~~l~~~~~~~~~~~~~~~~vGd~~~d~~ 109 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEI-----A---VQMILESKKRFDIRNGIIYLLGHLENDII 109 (242)
T ss_pred HHHHHCCCCccccceEEccHHH-----H---HHHHHhhhhhccCCCceEEEeCCcccchh
Confidence 7899999986 44555543321 0 1122222222222 24678899766553
No 74
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.21 E-value=9.1e-06 Score=68.67 Aligned_cols=95 Identities=11% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchh-hhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQR-AHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~Gy 230 (263)
.++.| .++++..|+++ +++.++||.+ +......|+..|+..+...++-.++....+|.. .|....+ +-|.
T Consensus 87 ~~~~~-~~e~L~~L~~~-~~l~I~T~~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~----~~~~ 157 (188)
T PRK10725 87 VEPLP-LIEVVKAWHGR-RPMAVGTGSE---SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQ----LMGV 157 (188)
T ss_pred CCCcc-HHHHHHHHHhC-CCEEEEcCCc---hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHH----HcCC
Confidence 35566 47899998765 8999999976 444557888889876545555544321334433 3332222 2222
Q ss_pred e--EEEEeCCCccccCCCC-ccceEEEc
Q 024759 231 R--IIGNMGDQWCDLLGDY-PGHRTFKL 255 (263)
Q Consensus 231 ~--Iv~~iGDq~sDl~G~~-~g~r~fkL 255 (263)
. -+.+|||..+|+.++. .|-+++-+
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEee
Confidence 2 2567899999999764 46666544
No 75
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.21 E-value=6.7e-06 Score=71.04 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhc-C
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVES-G 229 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~-G 229 (263)
..+.|++++++++|+++ ++++++||... +....-|++.|+..+-..++-.......+|. ..|.... +.. |
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~---~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~----~~~~~ 167 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVR---ETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYAL----ERMPK 167 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCch---HHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHH----HHhcC
Confidence 57899999999999999 99999999874 3444567788886543444433322123332 2344322 222 3
Q ss_pred Ce--EEEEeCCCc-cccCCC
Q 024759 230 YR--IIGNMGDQW-CDLLGD 246 (263)
Q Consensus 230 y~--Iv~~iGDq~-sDl~G~ 246 (263)
.+ -+.+|||+. +|+.++
T Consensus 168 ~~~~~~v~igD~~~~di~~A 187 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGG 187 (224)
T ss_pred CCchheEEECCCcHHHHHHH
Confidence 22 388999998 799975
No 76
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.20 E-value=7e-06 Score=69.65 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=69.8
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
.+.+++++|+|||++..- ...+.|++.++++.|+++|++++++||.+. +....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~ 75 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAK 75 (170)
T ss_pred CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHH
Confidence 567899999999988540 235679999999999999999999999873 22233
Q ss_pred HHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCc-cccCCCC-ccceEEE
Q 024759 188 SNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQW-CDLLGDY-PGHRTFK 254 (263)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~-sDl~G~~-~g~r~fk 254 (263)
..++..|+..+ . .. .++....|+...++. ... -.-+.+|||+. +|+.++. .|-+++-
T Consensus 76 ~~~~~~gl~~~----~---~~-~KP~p~~~~~~l~~~-~~~-~~~~l~IGDs~~~Di~aA~~aGi~~i~ 134 (170)
T TIGR01668 76 AVEKALGIPVL----P---HA-VKPPGCAFRRAHPEM-GLT-SEQVAVVGDRLFTDVMGGNRNGSYTIL 134 (170)
T ss_pred HHHHHcCCEEE----c---CC-CCCChHHHHHHHHHc-CCC-HHHEEEECCcchHHHHHHHHcCCeEEE
Confidence 44556666431 1 11 111222344332221 111 12388999998 7999874 4555443
No 77
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.20 E-value=4.6e-06 Score=71.28 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+++|||||||+.+..-|+...+-.-..|+.. . ..-++.|+++|+++.++|+++. ..+...
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~--------------D--~~~~~~L~~~Gi~laIiT~k~~---~~~~~~ 67 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFDIK--------------D--GMGVIVLQLCGIDVAIITSKKS---GAVRHR 67 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEecc--------------h--HHHHHHHHHCCCEEEEEECCCc---HHHHHH
Confidence 67999999999999877764433221223210 0 1235678899999999999984 456678
Q ss_pred HHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC--eEEEEeCCCccccCCCCccceEEEcCC
Q 024759 190 LKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY--RIIGNMGDQWCDLLGDYPGHRTFKLPN 257 (263)
Q Consensus 190 L~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy--~Iv~~iGDq~sDl~G~~~g~r~fkLPN 257 (263)
|+..|+..+.. .. .+++. .++ ..++..|. .-+++|||..+|+.......-.|-.+|
T Consensus 68 l~~lgi~~~f~----~~---kpkp~-~~~----~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 68 AEELKIKRFHE----GI---KKKTE-PYA----QMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HHHCCCcEEEe----cC---CCCHH-HHH----HHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 88889875322 11 12221 222 22222221 248999999999997654445555555
No 78
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.20 E-value=7.7e-06 Score=72.68 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcc-hhhhhHHHHHHHHhcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTT-QRAHKSAERRKLVESGY 230 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~Gy 230 (263)
.++.|++.++++.|+++ +++.++|+.+.. ++..|+..+-..++........|| ...|....+ ..|.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~----~~~~ 178 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAE----KLNV 178 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHH----HcCC
Confidence 46778999999999875 999999996643 356677654344544433212333 333433222 2222
Q ss_pred --eEEEEeCCCc-cccCCC-CccceEEEc
Q 024759 231 --RIIGNMGDQW-CDLLGD-YPGHRTFKL 255 (263)
Q Consensus 231 --~Iv~~iGDq~-sDl~G~-~~g~r~fkL 255 (263)
.-+.+|||++ .|+.|+ ..|-+++-+
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v 207 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWI 207 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEE
Confidence 2388999995 999986 356555544
No 79
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.18 E-value=6.1e-06 Score=73.73 Aligned_cols=59 Identities=27% Similarity=0.465 Sum_probs=45.4
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++||||||+++ .....|.+++.+++++++|++|++.|||+... ...-
T Consensus 3 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~ 53 (272)
T PRK10530 3 YRVIALDLDGTLLTP--------------------------KKTILPESLEALARAREAGYKVIIVTGRHHVA---IHPF 53 (272)
T ss_pred ccEEEEeCCCceECC--------------------------CCccCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHH
Confidence 468999999999975 11344778999999999999999999998543 3445
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
+++.|+..
T Consensus 54 ~~~l~~~~ 61 (272)
T PRK10530 54 YQALALDT 61 (272)
T ss_pred HHhcCCCC
Confidence 55666653
No 80
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.17 E-value=1.5e-05 Score=66.44 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcce--eeeecCCCC----C--CcchhhhhHHHH
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEK--LILRETGEW----N--DTTQRAHKSAER 222 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~--Lilr~~~~~----~--~~~~~~yKs~~R 222 (263)
..+..|++.++++.++++|++++++|+.. +..+...++..|+..+-. +....++.. . ..+...-|....
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l 147 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGF---DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVL 147 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHH
Confidence 45667999999999999999999999987 456667788888865211 111111000 0 111223465544
Q ss_pred HHHHhc-C--CeEEEEeCCCccccCC
Q 024759 223 RKLVES-G--YRIIGNMGDQWCDLLG 245 (263)
Q Consensus 223 ~~l~~~-G--y~Iv~~iGDq~sDl~G 245 (263)
+++.++ | +.-+.++||..+|+.-
T Consensus 148 ~~~~~~~~~~~~~~~~iGDs~~D~~~ 173 (177)
T TIGR01488 148 KELLEESKITLKKIIAVGDSVNDLPM 173 (177)
T ss_pred HHHHHHhCCCHHHEEEEeCCHHHHHH
Confidence 444332 2 4457899999999853
No 81
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.16 E-value=7.2e-06 Score=73.88 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=46.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++|||||||+. .....+.+++.+++|+++|+++++.|||+.. ....-
T Consensus 2 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~---~~~~~ 52 (272)
T PRK15126 2 ARLAAFDMDGTLLMP--------------------------DHHLGEKTLSTLARLRERDITLTFATGRHVL---EMQHI 52 (272)
T ss_pred ccEEEEeCCCcCcCC--------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCCHH---HHHHH
Confidence 358999999999975 1134578899999999999999999999954 34455
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
+++.|+..
T Consensus 53 ~~~l~~~~ 60 (272)
T PRK15126 53 LGALSLDA 60 (272)
T ss_pred HHHcCCCC
Confidence 66667654
No 82
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.16 E-value=6.9e-06 Score=71.71 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=44.4
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++|+||||++. .....|.+.+.+++|+++|+++++.|||+..... .-
T Consensus 3 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~---~~ 53 (230)
T PRK01158 3 IKAIAIDIDGTITDK--------------------------DRRLSLKAVEAIRKAEKLGIPVILATGNVLCFAR---AA 53 (230)
T ss_pred eeEEEEecCCCcCCC--------------------------CCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHH---HH
Confidence 368999999999975 1123378899999999999999999999965433 33
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
++..|++.
T Consensus 54 ~~~l~~~~ 61 (230)
T PRK01158 54 AKLIGTSG 61 (230)
T ss_pred HHHhCCCC
Confidence 45556653
No 83
>PRK10976 putative hydrolase; Provisional
Probab=98.14 E-value=7.7e-06 Score=73.23 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++|||||||+. .....+.+.+.+++|+++|+++++.|||+... ...-
T Consensus 2 ikli~~DlDGTLl~~--------------------------~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 52 (266)
T PRK10976 2 YQVVASDLDGTLLSP--------------------------DHTLSPYAKETLKLLTARGIHFVFATGRHHVD---VGQI 52 (266)
T ss_pred ceEEEEeCCCCCcCC--------------------------CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHH
Confidence 368999999999975 11234778999999999999999999998653 3344
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
++..|+..
T Consensus 53 ~~~l~~~~ 60 (266)
T PRK10976 53 RDNLEIKS 60 (266)
T ss_pred HHhcCCCC
Confidence 55556653
No 84
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.12 E-value=2.2e-05 Score=67.19 Aligned_cols=104 Identities=22% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc--ceeeeecCCCCCCcc-----hhhhhHHHHHH
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW--EKLILRETGEWNDTT-----QRAHKSAERRK 224 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~--~~Lilr~~~~~~~~~-----~~~yKs~~R~~ 224 (263)
....|++.++++.++++|++++++|+-.+.. ....++..|+..+ .++....++...++. ...-|...-++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~---v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~ 162 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTIL---VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAE 162 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHH
Confidence 4578999999999999999999999988543 3455666777642 113321111001110 11224332333
Q ss_pred -HHhcCCe--EEEEeCCCccccCCC-CccceEEEcCCC
Q 024759 225 -LVESGYR--IIGNMGDQWCDLLGD-YPGHRTFKLPNP 258 (263)
Q Consensus 225 -l~~~Gy~--Iv~~iGDq~sDl~G~-~~g~r~fkLPNp 258 (263)
+.+.|.. .+..+||..+|+.-. ..|..+..-|+|
T Consensus 163 ~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 163 LLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 3334443 567899999999854 356677777776
No 85
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.10 E-value=1e-05 Score=70.46 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=41.8
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
|++|||||||++ ....++.+.+.+++|+++|++++++|||+.... ...++.
T Consensus 2 i~~DlDGTLL~~--------------------------~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~---~~~~~~ 52 (221)
T TIGR02463 2 VFSDLDGTLLDS--------------------------HSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEV---EYLQKA 52 (221)
T ss_pred EEEeCCCCCcCC--------------------------CCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHH
Confidence 789999999975 112345689999999999999999999996543 444455
Q ss_pred cCCC
Q 024759 193 VGYH 196 (263)
Q Consensus 193 ~G~~ 196 (263)
.|+.
T Consensus 53 l~~~ 56 (221)
T TIGR02463 53 LGLT 56 (221)
T ss_pred cCCC
Confidence 5554
No 86
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.10 E-value=1e-05 Score=72.57 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=44.5
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++|+|||||.. ....-+.+++.+++|+++|++|++.|||+... ...-
T Consensus 3 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~ 53 (270)
T PRK10513 3 IKLIAIDMDGTLLLP--------------------------DHTISPAVKQAIAAARAKGVNVVLTTGRPYAG---VHRY 53 (270)
T ss_pred eEEEEEecCCcCcCC--------------------------CCccCHHHHHHHHHHHHCCCEEEEecCCChHH---HHHH
Confidence 468999999999975 11334788999999999999999999999654 3344
Q ss_pred HHHcCCC
Q 024759 190 LKNVGYH 196 (263)
Q Consensus 190 L~~~G~~ 196 (263)
+++.|+.
T Consensus 54 ~~~l~~~ 60 (270)
T PRK10513 54 LKELHME 60 (270)
T ss_pred HHHhCCC
Confidence 5555653
No 87
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.09 E-value=8.1e-06 Score=73.37 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=50.9
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL 190 (263)
+.++||+||||+.. ..++|++.+++++|+++|.+++|+||++...++...+-|
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 57999999999864 135688999999999999999999986655577778889
Q ss_pred HHcCCCC
Q 024759 191 KNVGYHS 197 (263)
Q Consensus 191 ~~~G~~~ 197 (263)
++.|++.
T Consensus 55 ~~~g~~~ 61 (249)
T TIGR01457 55 ASFDIPA 61 (249)
T ss_pred HHcCCCC
Confidence 9999976
No 88
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.08 E-value=1.6e-05 Score=75.57 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=79.3
Q ss_pred CcEEEEecCCccccCc--hhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC--------
Q 024759 110 KDIWILDVDDSLITHV--DFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRM-------- 179 (263)
Q Consensus 110 ~~avVfDIDeTll~n~--~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~-------- 179 (263)
+++++||.||||.... .|+.... ...++.|++.+++.+|+++|++++++|+.+
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~-----------------~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~ 64 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSL-----------------DKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFP 64 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCc-----------------ccceECcCHHHHHHHHHhCCCeEEEEECCccccCcccc
Confidence 5789999999999752 1221110 135788999999999999999999999952
Q ss_pred cc----cHHHHHHHHHHcCCCCcceeeeecC----CCCCCcch-hhhhHHHHHHHHhcCCeEEEEeCCCccccCCC-Ccc
Q 024759 180 EP----SRNFTESNLKNVGYHSWEKLILRET----GEWNDTTQ-RAHKSAERRKLVESGYRIIGNMGDQWCDLLGD-YPG 249 (263)
Q Consensus 180 e~----~r~~T~~nL~~~G~~~~~~Lilr~~----~~~~~~~~-~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~-~~g 249 (263)
+. .+....+.|+..|+. .+..++.+. +...++|. ..+.... +.+. -...-+.+|||..+|+.++ ..|
T Consensus 65 ~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p~~l~~a~-~~l~-v~~~~svmIGDs~sDi~aAk~aG 141 (354)
T PRK05446 65 QEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKTGLVEEYL-AEGA-IDLANSYVIGDRETDVQLAENMG 141 (354)
T ss_pred HHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCHHHHHHHH-HHcC-CCcccEEEEcCCHHHHHHHHHCC
Confidence 11 134566778888886 355555531 11022222 1222111 1111 1113478999999999876 456
Q ss_pred ceEEEcCCCC
Q 024759 250 HRTFKLPNPV 259 (263)
Q Consensus 250 ~r~fkLPNp~ 259 (263)
-+++- .||-
T Consensus 142 i~~I~-v~~~ 150 (354)
T PRK05446 142 IKGIR-YARE 150 (354)
T ss_pred CeEEE-EECC
Confidence 66554 3553
No 89
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.08 E-value=3.1e-05 Score=67.10 Aligned_cols=97 Identities=23% Similarity=0.336 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcchh-hhhHHHHHHHHhcC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQR-AHKSAERRKLVESG 229 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~G 229 (263)
.++.|++++.++.+.++ ++++++||=. +....+.|++.|+..+ +.++...... ..||+. .|+ ..++..|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~---~~~~~~~l~~~gl~~~Fd~v~~s~~~g-~~KP~~~~f~----~~~~~~g 168 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGA---RPHQERKLRQLGLLDYFDAVFISEDVG-VAKPDPEIFE----YALEKLG 168 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCC---hHHHHHHHHHcCChhhhheEEEecccc-cCCCCcHHHH----HHHHHcC
Confidence 68889999999999999 9999999964 4456688899997654 4455444332 234433 333 2333333
Q ss_pred --CeEEEEeCCCc-cccCCC-CccceEEEcCC
Q 024759 230 --YRIIGNMGDQW-CDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 230 --y~Iv~~iGDq~-sDl~G~-~~g~r~fkLPN 257 (263)
-.-+.+|||+. +|+.|+ ..|-+++-+..
T Consensus 169 ~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~ 200 (229)
T COG1011 169 VPPEEALFVGDSLENDILGARALGMKTVWINR 200 (229)
T ss_pred CCcceEEEECCChhhhhHHHHhcCcEEEEECC
Confidence 23588999988 786775 46766654443
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.07 E-value=2.4e-05 Score=83.65 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCC-CcceeeeecCCCCCCcc-hhhhhHHHHHHHHhcCC
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYH-SWEKLILRETGEWNDTT-QRAHKSAERRKLVESGY 230 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~-~~~~Lilr~~~~~~~~~-~~~yKs~~R~~l~~~Gy 230 (263)
.++|++.++++.|+++|+++.++|+.. +......|++.|+. .+...++-.++....|| ...|....+ ++.-. -
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~---~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~-~lgv~-p 235 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD---RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAK-ILGVP-T 235 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHH-HcCcC-c
Confidence 468999999999999999999999987 44455678888985 33233443333213344 334443322 22211 1
Q ss_pred eEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 231 RIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
.-+.+|||..+|+.++ ..|-+++-+..
T Consensus 236 ~e~v~IgDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 236 SECVVIEDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred ccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 2367899999999976 35677766543
No 91
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.07 E-value=1.1e-05 Score=70.27 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc-eeeeecCCCCCCcchh-hhhHHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE-KLILRETGEWNDTTQR-AHKSAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~-~Lilr~~~~~~~~~~~-~yKs~~R~~l~~~ 228 (263)
..++.|++.++++.| ++++.++||-+ +..+...|+..|+..+. ..+....+....||.. .|.. .+++.
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~----a~~~~ 155 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFH----AAEAM 155 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHH----HHHHc
Confidence 356778888888887 58999999965 45667788888887653 4455443221334433 2322 22222
Q ss_pred CCe--EEEEeCCCccccCCC-CccceEEE
Q 024759 229 GYR--IIGNMGDQWCDLLGD-YPGHRTFK 254 (263)
Q Consensus 229 Gy~--Iv~~iGDq~sDl~G~-~~g~r~fk 254 (263)
|-. -+.+|||.++|+.++ ..|-+++-
T Consensus 156 ~~~p~~~l~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 156 NVNVENCILVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHCCCEEEE
Confidence 221 267899999999875 34555543
No 92
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.07 E-value=1.8e-05 Score=73.24 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCC-CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGIS-PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~-paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T 186 (263)
.-+.+|+||+||||+... + .. ..-|++.+++.+|+++|+++.++|++. |+..
T Consensus 124 ~~~kvIvFDLDgTLi~~~-----~-------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~---Re~v 176 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDE-----E-------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGD---RDHV 176 (301)
T ss_pred ccceEEEEecCCCCcCCC-----C-------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCC---HHHH
Confidence 346699999999999861 0 11 224999999999999999999999987 4444
Q ss_pred HHHHHHcCCCCcceeeeecC
Q 024759 187 ESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~ 206 (263)
.+-|++.|+..+-..++.+.
T Consensus 177 ~~~L~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 177 VESMRKVKLDRYFDIIISGG 196 (301)
T ss_pred HHHHHHcCCCcccCEEEECC
Confidence 57899999987655555443
No 93
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.06 E-value=1.3e-05 Score=69.26 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=43.2
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
|++||||||+.. .....|.+++.++.|+++|+++++.|||+.. ....-+..
T Consensus 1 i~~DlDGTLl~~--------------------------~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~---~~~~~~~~ 51 (254)
T PF08282_consen 1 IFSDLDGTLLNS--------------------------DGKISPETIEALKELQEKGIKLVIATGRSYS---SIKRLLKE 51 (254)
T ss_dssp EEEECCTTTCST--------------------------TSSSCHHHHHHHHHHHHTTCEEEEECSSTHH---HHHHHHHH
T ss_pred cEEEECCceecC--------------------------CCeeCHHHHHHHHhhcccceEEEEEccCccc---cccccccc
Confidence 689999999974 1124489999999999999999999999854 34555556
Q ss_pred cCCC
Q 024759 193 VGYH 196 (263)
Q Consensus 193 ~G~~ 196 (263)
.++.
T Consensus 52 ~~~~ 55 (254)
T PF08282_consen 52 LGID 55 (254)
T ss_dssp TTHC
T ss_pred ccch
Confidence 6665
No 94
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.05 E-value=7.4e-06 Score=70.41 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=78.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHH-HH---HcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALIN-YL---AQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNF 185 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~-wv---~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~ 185 (263)
+..+|||+|.|+-..+-+.-. +.++.+..=++ -+ .....++.|++.++++.|+++|+++.++|+... +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~--~~~ 75 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLL----GGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV--PEW 75 (174)
T ss_pred CcEEEEeCCCCCcCccccccc----CCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC--hHH
Confidence 468999999999876433211 12222111000 00 112457889999999999999999999999822 334
Q ss_pred HHHHHHHcCCC---------CcceeeeecCCCCCCcchh-hhhHHHHH---HHHhcCCeEEEEeCCCccccCCCC-ccce
Q 024759 186 TESNLKNVGYH---------SWEKLILRETGEWNDTTQR-AHKSAERR---KLVESGYRIIGNMGDQWCDLLGDY-PGHR 251 (263)
Q Consensus 186 T~~nL~~~G~~---------~~~~Lilr~~~~~~~~~~~-~yKs~~R~---~l~~~Gy~Iv~~iGDq~sDl~G~~-~g~r 251 (263)
....|...|+. .+...+.-.......++.. .++...++ .+. ..-+.+|||...|+.++. .|-+
T Consensus 76 ~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~---p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 76 AYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLK---PAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred HHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCC---HHHeEEEcChhHhHHHHHHhCCE
Confidence 45667777764 3323333322210111111 11111110 011 235889999999998753 4666
Q ss_pred EEEcCC
Q 024759 252 TFKLPN 257 (263)
Q Consensus 252 ~fkLPN 257 (263)
++-++.
T Consensus 153 ~i~v~~ 158 (174)
T TIGR01685 153 SCYCPS 158 (174)
T ss_pred EEEcCC
Confidence 665543
No 95
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.05 E-value=1.5e-05 Score=72.10 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=45.7
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.+.+++|||||||.. .....+++.+.+++|+++|++++++|||+.. ....-
T Consensus 4 ~kli~~DlDGTLl~~--------------------------~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~---~~~~~ 54 (273)
T PRK00192 4 KLLVFTDLDGTLLDH--------------------------HTYSYEPAKPALKALKEKGIPVIPCTSKTAA---EVEVL 54 (273)
T ss_pred ceEEEEcCcccCcCC--------------------------CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHH
Confidence 468999999999974 1123477999999999999999999999853 34455
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
+++.|+..
T Consensus 55 ~~~l~l~~ 62 (273)
T PRK00192 55 RKELGLED 62 (273)
T ss_pred HHHcCCCC
Confidence 66667653
No 96
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.05 E-value=1.1e-05 Score=66.95 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=71.4
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCC-hHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFD-VTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~-~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
+..+|+||||||+....-- ........+. .....+-...-...+.|++.++++.|+ +|+++.++|+..... ...
T Consensus 2 k~~lvldld~tl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~---~~~ 76 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRS-FKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY---ADP 76 (148)
T ss_pred CcEEEEeCCCCeECCCCCc-CCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH---HHH
Confidence 5689999999999863200 0000000000 000000000112356899999999998 689999999988543 445
Q ss_pred HHHHcCCCC-c-ceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCCC
Q 024759 189 NLKNVGYHS-W-EKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 189 nL~~~G~~~-~-~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~ 247 (263)
-|+..|... + +.++-+.+.. .+++. -.|...+... .-.-+.+|||...|+..++
T Consensus 77 il~~l~~~~~~f~~i~~~~d~~-~~KP~-~~k~l~~l~~---~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 77 VLDLLDPKKYFGYRRLFRDECV-FVKGK-YVKDLSLLGR---DLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHhCcCCCEeeeEEECcccc-ccCCe-EeecHHHcCC---ChhcEEEEECCHHHhhcCc
Confidence 566666632 3 4444444332 34443 2232222221 1234779999999999775
No 97
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.04 E-value=9.3e-06 Score=72.72 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=45.0
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
++.+++|||||||+. .....+.+.+.+++++++|++|++.|||+-.... .-
T Consensus 3 ~kli~~DlDGTLl~~--------------------------~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~---~~ 53 (264)
T COG0561 3 IKLLAFDLDGTLLDS--------------------------NKTISPETKEALARLREKGVKVVLATGRPLPDVL---SI 53 (264)
T ss_pred eeEEEEcCCCCccCC--------------------------CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHH---HH
Confidence 568999999999986 1235588999999999999999999999964433 44
Q ss_pred HHHcCCC
Q 024759 190 LKNVGYH 196 (263)
Q Consensus 190 L~~~G~~ 196 (263)
++..|..
T Consensus 54 ~~~l~~~ 60 (264)
T COG0561 54 LEELGLD 60 (264)
T ss_pred HHHcCCC
Confidence 4444554
No 98
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.04 E-value=1.3e-05 Score=69.81 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=43.0
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL 190 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL 190 (263)
+.|++|+||||+++ .....|.+.+.+++|+++|+++++.|||+...-.. -+
T Consensus 2 k~v~~DlDGTLl~~--------------------------~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~---~~ 52 (215)
T TIGR01487 2 KLVAIDIDGTLTEP--------------------------NRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARA---LA 52 (215)
T ss_pred cEEEEecCCCcCCC--------------------------CcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHH---HH
Confidence 57999999999975 11334788999999999999999999998654333 23
Q ss_pred HHcCCC
Q 024759 191 KNVGYH 196 (263)
Q Consensus 191 ~~~G~~ 196 (263)
+..|+.
T Consensus 53 ~~l~~~ 58 (215)
T TIGR01487 53 VLIGTS 58 (215)
T ss_pred HHhCCC
Confidence 444554
No 99
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.02 E-value=1.6e-05 Score=71.07 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=44.1
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
+++||||||+... ...++.+++.+++|+++|++++++|||+.. .....+++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~---~~~~~~~~ 52 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKTAA---EVEYLRKE 52 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHH
Confidence 7899999999751 113456899999999999999999999954 44567777
Q ss_pred cCCCC
Q 024759 193 VGYHS 197 (263)
Q Consensus 193 ~G~~~ 197 (263)
.|++.
T Consensus 53 ~~~~~ 57 (256)
T TIGR01486 53 LGLED 57 (256)
T ss_pred cCCCC
Confidence 78753
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.01 E-value=2.2e-05 Score=70.98 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=45.1
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
..+..|++|||||||+. .....+.+.+.+++|+++|+++++.|||+.... .
T Consensus 5 ~~~~lI~~DlDGTLL~~--------------------------~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i---~ 55 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDS--------------------------HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEM---L 55 (271)
T ss_pred CCCeEEEEeCccCCcCC--------------------------CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHH---H
Confidence 34679999999999964 112236788999999999999999999996543 3
Q ss_pred HHHHHcCCC
Q 024759 188 SNLKNVGYH 196 (263)
Q Consensus 188 ~nL~~~G~~ 196 (263)
.-+++.|++
T Consensus 56 ~~~~~l~~~ 64 (271)
T PRK03669 56 PLQQTLGLQ 64 (271)
T ss_pred HHHHHhCCC
Confidence 444555664
No 101
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.00 E-value=1.9e-05 Score=70.36 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=43.4
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
.+++||||||++. ....-+.+.+.+++|+++|+++++.|||+.. ....-++
T Consensus 1 li~~DlDGTLl~~--------------------------~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~---~~~~~~~ 51 (256)
T TIGR00099 1 LIFIDLDGTLLND--------------------------DHTISPSTKEALAKLREKGIKVVLATGRPYK---EVKNILK 51 (256)
T ss_pred CEEEeCCCCCCCC--------------------------CCccCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHH
Confidence 3789999999975 1123478899999999999999999999943 3345566
Q ss_pred HcCCC
Q 024759 192 NVGYH 196 (263)
Q Consensus 192 ~~G~~ 196 (263)
+.|+.
T Consensus 52 ~~~~~ 56 (256)
T TIGR00099 52 ELGLD 56 (256)
T ss_pred HcCCC
Confidence 66766
No 102
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.00 E-value=1.9e-05 Score=70.06 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=43.1
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
.|+|||||||++.. ...+++.+.+++|+++|+.+++.|||+.. ....-++
T Consensus 1 li~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~~---~~~~~~~ 50 (225)
T TIGR02461 1 VIFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKTRA---EQEYYRE 50 (225)
T ss_pred CEEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHH
Confidence 37899999999740 12467999999999999999999999954 3445566
Q ss_pred HcCCC
Q 024759 192 NVGYH 196 (263)
Q Consensus 192 ~~G~~ 196 (263)
+.|+.
T Consensus 51 ~lg~~ 55 (225)
T TIGR02461 51 ELGVE 55 (225)
T ss_pred HcCCC
Confidence 77764
No 103
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.96 E-value=1.5e-05 Score=69.13 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=41.3
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
|++|+||||+++. ....+.+.+.+++|+++|+.+++.|||+...... -++.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~---~~~~ 51 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNSVQFARA---LAKL 51 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH---HHHH
Confidence 5899999999751 1233778889999999999999999999654433 3445
Q ss_pred cCCC
Q 024759 193 VGYH 196 (263)
Q Consensus 193 ~G~~ 196 (263)
.|++
T Consensus 52 l~~~ 55 (225)
T TIGR01482 52 IGTP 55 (225)
T ss_pred hCCC
Confidence 5654
No 104
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.94 E-value=1.7e-05 Score=67.09 Aligned_cols=107 Identities=29% Similarity=0.442 Sum_probs=69.0
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
..+-+|||+||||.+-.-||..++-.-..||. .+| .-++.|.+.|++|.+||||+.. .-++
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv-------~DG---------~Gik~l~~~Gi~vAIITGr~s~---ive~ 67 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNV-------RDG---------HGIKLLLKSGIKVAIITGRDSP---IVEK 67 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeec-------cCc---------HHHHHHHHcCCeEEEEeCCCCH---HHHH
Confidence 34679999999999988888655433233421 111 1246778899999999999854 4456
Q ss_pred HHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccC
Q 024759 189 NLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 189 nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~ 244 (263)
-.++.|++. ++ .+..+ +-..|+ +.++++. -++.-+++|||-+.|+.
T Consensus 68 Ra~~LGI~~---~~-qG~~d----K~~a~~-~L~~~~~-l~~e~~ayiGDD~~Dlp 113 (170)
T COG1778 68 RAKDLGIKH---LY-QGISD----KLAAFE-ELLKKLN-LDPEEVAYVGDDLVDLP 113 (170)
T ss_pred HHHHcCCce---ee-echHh----HHHHHH-HHHHHhC-CCHHHhhhhcCccccHH
Confidence 677789864 33 33322 122232 2333332 35667999999999986
No 105
>PTZ00174 phosphomannomutase; Provisional
Probab=97.93 E-value=1.9e-05 Score=70.69 Aligned_cols=47 Identities=32% Similarity=0.427 Sum_probs=39.3
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
..+.|++|+|||||++ .....|.+.+.+++++++|+++++.|||+..
T Consensus 4 ~~klia~DlDGTLL~~--------------------------~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 4 KKTILLFDVDGTLTKP--------------------------RNPITQEMKDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CCeEEEEECcCCCcCC--------------------------CCCCCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 3578999999999975 1234477899999999999999999999854
No 106
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.88 E-value=0.00012 Score=64.18 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc--eeeeecCCCCCCc--chhhhhHHHHHHHHh
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE--KLILRETGEWNDT--TQRAHKSAERRKLVE 227 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~--~Lilr~~~~~~~~--~~~~yKs~~R~~l~~ 227 (263)
.+..|++.++++.+++.| +++++||-. +..+...+++.|++.+- ++...+.+...+. ....-|....+.+.+
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~---~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~ 142 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTF---YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKS 142 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCCh---HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHh
Confidence 478999999999999985 999999976 45667788888987531 2444331110110 112336666666766
Q ss_pred cCCeEEEEeCCCccccCC
Q 024759 228 SGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 228 ~Gy~Iv~~iGDq~sDl~G 245 (263)
.|.+ +.++||..+|+..
T Consensus 143 ~~~~-~v~vGDs~nDl~m 159 (203)
T TIGR02137 143 LYYR-VIAAGDSYNDTTM 159 (203)
T ss_pred hCCC-EEEEeCCHHHHHH
Confidence 6654 5688999999974
No 107
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.87 E-value=3.4e-05 Score=70.70 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=53.5
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
+..++++||+|||+..- ..++|++.++++.|+++|.+++||||.+-..++.-.
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~ 58 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVA 58 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 45679999999998853 368899999999999999999999999998888888
Q ss_pred HHHHHcCCC
Q 024759 188 SNLKNVGYH 196 (263)
Q Consensus 188 ~nL~~~G~~ 196 (263)
+.|+..|..
T Consensus 59 ~~L~~~~~~ 67 (269)
T COG0647 59 ARLSSLGGV 67 (269)
T ss_pred HHHHhhcCC
Confidence 888885444
No 108
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.83 E-value=8.5e-05 Score=68.90 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCC-CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGIS-PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~-paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T 186 (263)
.-+..++||+||||+..- . .. .-.|++.+++.+|+++|+++.++|+.+ +...
T Consensus 126 ~~~~~i~~D~D~TL~~~~-----~-------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~---Re~v 178 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE-----E-------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGN---REHV 178 (303)
T ss_pred eeccEEEEecCCCccCCC-----C-------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCC---hHHH
Confidence 346799999999999761 0 11 124899999999999999999999876 3344
Q ss_pred HHHHHHcCCCCcceeeeecC
Q 024759 187 ESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 187 ~~nL~~~G~~~~~~Lilr~~ 206 (263)
..-|++.|+..+...++-++
T Consensus 179 ~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 179 VHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred HHHHHHcCCCccccEEEECC
Confidence 67888899987655555443
No 109
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.83 E-value=5.2e-05 Score=75.49 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcc------
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEP------ 181 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~------ 181 (263)
...+++.||.||||..+.... .| +.++++|.- ..|++.+.++.|++.|++|+++||.+..
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~---~~---~~~~~d~~~--------l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~ 231 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGK---VF---PKGPDDWQI--------IFPEIPEKLKELEADGFKICIFTNQGGIARGKIN 231 (526)
T ss_pred ccCcEEEEECCCCccccCCCc---cC---CCCHHHeee--------cccCHHHHHHHHHHCCCEEEEEECCcccccCccc
Confidence 345799999999999752110 01 123444432 4589999999999999999999997652
Q ss_pred ---cHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhc---C----CeEEEEeCCCccccCC
Q 024759 182 ---SRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVES---G----YRIIGNMGDQWCDLLG 245 (263)
Q Consensus 182 ---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~---G----y~Iv~~iGDq~sDl~G 245 (263)
......+.|+..|++. + .+.-+.....++|.. ++...+.++ | ..=..+|||..+|+..
T Consensus 232 ~~~~~~ki~~iL~~lgipf-d-viia~~~~~~RKP~p----Gm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~ 299 (526)
T TIGR01663 232 ADDFKAKIEAIVAKLGVPF-Q-VFIAIGAGFYRKPLT----GMWDHLKEEANDGTEIQEDDCFFVGDAAGRPAN 299 (526)
T ss_pred HHHHHHHHHHHHHHcCCce-E-EEEeCCCCCCCCCCH----HHHHHHHHhcCcccCCCHHHeEEeCCcccchHH
Confidence 2234667888999984 4 444333321233322 222222211 1 1126799999999853
No 110
>PLN02887 hydrolase family protein
Probab=97.79 E-value=8.2e-05 Score=74.90 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=43.8
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
..+.|++|||||||++ ....-+.+++.+++|+++|++|++.|||+.... ..
T Consensus 307 ~iKLIa~DLDGTLLn~--------------------------d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i---~~ 357 (580)
T PLN02887 307 KFSYIFCDMDGTLLNS--------------------------KSQISETNAKALKEALSRGVKVVIATGKARPAV---ID 357 (580)
T ss_pred CccEEEEeCCCCCCCC--------------------------CCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHH---HH
Confidence 3568999999999975 112347889999999999999999999995443 33
Q ss_pred HHHHcCC
Q 024759 189 NLKNVGY 195 (263)
Q Consensus 189 nL~~~G~ 195 (263)
.+++.|+
T Consensus 358 ~l~~L~l 364 (580)
T PLN02887 358 ILKMVDL 364 (580)
T ss_pred HHHHhCc
Confidence 4444444
No 111
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.78 E-value=8.9e-05 Score=68.79 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=43.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
++.|++|+|||||++..| -.+.+.+.+++|+++|+.|++.|||+.......
T Consensus 1 ~KLIftDLDGTLLd~~~~--------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l--- 51 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFN--------------------------SYGAARQALAALERRSIPLVLYSLRTRAQLEHL--- 51 (302)
T ss_pred CcEEEEeCCCCCcCCCCc--------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH---
Confidence 357899999999985211 225688999999999999999999996544433
Q ss_pred HHHcCCC
Q 024759 190 LKNVGYH 196 (263)
Q Consensus 190 L~~~G~~ 196 (263)
+++.|+.
T Consensus 52 ~~~Lgl~ 58 (302)
T PRK12702 52 CRQLRLE 58 (302)
T ss_pred HHHhCCC
Confidence 4444554
No 112
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.78 E-value=4.3e-05 Score=65.64 Aligned_cols=45 Identities=31% Similarity=0.502 Sum_probs=37.5
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
+++|+||||+++. ..+..+.+.+.+++|.++|++++++|||+...
T Consensus 2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~ 46 (204)
T TIGR01484 2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRSLAE 46 (204)
T ss_pred EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence 7899999999751 02445889999999999999999999999654
No 113
>PRK08238 hypothetical protein; Validated
Probab=97.78 E-value=0.00021 Score=70.51 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCCcEEEEecCCccccCchhhhh--cCCCcccCC-----------hHHHHHHHHc------CCCCCCHHHHHHHHHHHHC
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQ--NGFGTEIFD-----------VTALINYLAQ------GISPALPESLKLYRRLLRL 168 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~--~~~g~~~y~-----------~~~~~~wv~~------~~~paip~~l~l~~~l~~~ 168 (263)
......+||+||||+.+.-.... ....+.|+. .....+.... ...|..|++++++++++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 34458999999999865322211 111222211 1111221111 2346679999999999999
Q ss_pred CCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHH-HHHhcCCeEEEEeCCCccccCCC
Q 024759 169 GFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERR-KLVESGYRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 169 G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~-~l~~~Gy~Iv~~iGDq~sDl~G~ 246 (263)
|.+++++|+.++. .....++..|+ .+..+ -.++..+.++.. |.+..+ .+.++| ..++||..+|+...
T Consensus 88 G~~v~LaTas~~~---~a~~i~~~lGl--Fd~Vi-gsd~~~~~kg~~--K~~~l~~~l~~~~---~~yvGDS~~Dlp~~ 155 (479)
T PRK08238 88 GRKLVLATASDER---LAQAVAAHLGL--FDGVF-ASDGTTNLKGAA--KAAALVEAFGERG---FDYAGNSAADLPVW 155 (479)
T ss_pred CCEEEEEeCCCHH---HHHHHHHHcCC--CCEEE-eCCCccccCCch--HHHHHHHHhCccC---eeEecCCHHHHHHH
Confidence 9999999999854 44455666676 23333 333221222111 433322 222233 25689999999853
No 114
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00025 Score=62.62 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCccee-eeecCCCCCC-----cchhhhhHHHHHHH
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKL-ILRETGEWND-----TTQRAHKSAERRKL 225 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~L-ilr~~~~~~~-----~~~~~yKs~~R~~l 225 (263)
.+..|++.++++.++++|++|++|||=... .+..-.+..|+..+-.. +...++.+.+ .-....|....+++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~---lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTF---LVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHH---HHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 678899999999999999999999998753 44455566688764222 2222220011 11234576666555
Q ss_pred Hh-cCCe--EEEEeCCCccccC
Q 024759 226 VE-SGYR--IIGNMGDQWCDLL 244 (263)
Q Consensus 226 ~~-~Gy~--Iv~~iGDq~sDl~ 244 (263)
.+ .|.+ -...+||..+|+.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHH
Confidence 54 4666 7889999999986
No 115
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.76 E-value=0.0001 Score=64.36 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC-c--ceeeeecCCCCCCcc--h--------hhh
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS-W--EKLILRETGEWNDTT--Q--------RAH 217 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~--~~Lilr~~~~~~~~~--~--------~~y 217 (263)
..+..|++.++++.|+++|++++++|+.... .....|+..+... . ..+...+..-...++ . -.-
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~---~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDF---FVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHH---HHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 4688999999999999999999999999754 3444455443211 1 012222111000001 0 012
Q ss_pred hHHHHHHHHhcCCeEEEEeCCCccccCCCCccceE
Q 024759 218 KSAERRKLVESGYRIIGNMGDQWCDLLGDYPGHRT 252 (263)
Q Consensus 218 Ks~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~~g~r~ 252 (263)
|...-+++.....++ .+|||..+|+..+..+...
T Consensus 145 K~~~l~~~~~~~~~~-i~iGDg~~D~~~a~~Ad~~ 178 (214)
T TIGR03333 145 KPSLIRKLSEPNDYH-IVIGDSVTDVEAAKQSDLC 178 (214)
T ss_pred HHHHHHHHhhcCCcE-EEEeCCHHHHHHHHhCCee
Confidence 555555555454544 6899999999876544333
No 116
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.75 E-value=0.00038 Score=62.62 Aligned_cols=131 Identities=19% Similarity=0.314 Sum_probs=86.7
Q ss_pred EEEEecCCcccc-CchhhhhcCCCccc--------CChHHHHHHHHc-------------------CCCCCCHHHHHHHH
Q 024759 112 IWILDVDDSLIT-HVDFYAQNGFGTEI--------FDVTALINYLAQ-------------------GISPALPESLKLYR 163 (263)
Q Consensus 112 avVfDIDeTll~-n~~y~~~~~~g~~~--------y~~~~~~~wv~~-------------------~~~paip~~l~l~~ 163 (263)
.+|||-|+|+++ |+..+.-..++.+. +....|.+++.. ...|..|+++++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 489999999996 44444333344332 222235555432 46788999999999
Q ss_pred HH--HHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-c-------------eeeeecCCCCCCc---chhhhhHHHHHH
Q 024759 164 RL--LRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-E-------------KLILRETGEWNDT---TQRAHKSAERRK 224 (263)
Q Consensus 164 ~l--~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~-------------~Lilr~~~~~~~~---~~~~yKs~~R~~ 224 (263)
.+ .+.|+.+++||.=.. -....+|+.+|+... + .|.+++-.. +++ +.-.-|.....+
T Consensus 82 ~l~~~~~~~~~~IiSDaNs---~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~-h~C~~C~~NmCK~~il~~ 157 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDANS---FFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS-HGCSLCPPNMCKGKILER 157 (234)
T ss_pred HHHhcCCCceEEEEeCCcH---hHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccC-CCCCcCCCccchHHHHHH
Confidence 99 568999999998653 355689999999752 1 233333222 222 233457776666
Q ss_pred HHhc----C--CeEEEEeCCCccccCCC
Q 024759 225 LVES----G--YRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 225 l~~~----G--y~Iv~~iGDq~sDl~G~ 246 (263)
+.++ | |+-+.+|||--+|+-..
T Consensus 158 ~~~~~~~~g~~~~rviYiGDG~nD~Cp~ 185 (234)
T PF06888_consen 158 LLQEQAQRGVPYDRVIYIGDGRNDFCPA 185 (234)
T ss_pred HHHHHhhcCCCcceEEEECCCCCCcCcc
Confidence 6554 4 88899999999999764
No 117
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.73 E-value=6.5e-05 Score=66.94 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=49.8
Q ss_pred EEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH
Q 024759 113 WILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN 192 (263)
Q Consensus 113 vVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~ 192 (263)
++||+||||++. ..++|++.+.++.++++|.+++|+||.+...+....+.|.+
T Consensus 1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999975 24578999999999999999999998877778888899998
Q ss_pred -cCCCC
Q 024759 193 -VGYHS 197 (263)
Q Consensus 193 -~G~~~ 197 (263)
.|++.
T Consensus 54 ~~g~~~ 59 (236)
T TIGR01460 54 LLGVDV 59 (236)
T ss_pred hcCCCC
Confidence 68765
No 118
>PRK11590 hypothetical protein; Provisional
Probab=97.73 E-value=0.00061 Score=59.48 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCCHHHHHHH-HHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCC-CCCCc--chhhhhHHHHHHHHh
Q 024759 152 SPALPESLKLY-RRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETG-EWNDT--TQRAHKSAERRKLVE 227 (263)
Q Consensus 152 ~paip~~l~l~-~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~-~~~~~--~~~~yKs~~R~~l~~ 227 (263)
..+.|++.+++ +.++++|++++++|+.++ ..+...+...|+..-++++-..-. .+.++ ...-+..++.+++++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~---~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~ 170 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQ---PLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLER 170 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcH---HHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHH
Confidence 45689999999 578889999999999984 455567777674211233321100 00111 122344444444443
Q ss_pred ---cCCeEEEEeCCCccccCC-CCccceEEEcCCC
Q 024759 228 ---SGYRIIGNMGDQWCDLLG-DYPGHRTFKLPNP 258 (263)
Q Consensus 228 ---~Gy~Iv~~iGDq~sDl~G-~~~g~r~fkLPNp 258 (263)
..+...-..||..+|+.= ...+..+.+=|+|
T Consensus 171 ~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 171 KIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 245556689999999862 1123444444544
No 119
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.72 E-value=3e-05 Score=64.86 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch-hhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ-RAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~-~~yKs~~R~~l~~~G 229 (263)
..++.|++.++++ ++.++||-+ +......|++.|+..+...++-.+.....||. ..|....++.=..
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~-- 155 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS---HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLP-- 155 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC---HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCC--
Confidence 3467888888887 377899976 44445678888887643434443331123433 3444333221111
Q ss_pred CeEEEEeCCCccccCCCC
Q 024759 230 YRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~~ 247 (263)
-.-+.+|||+..|+.|+.
T Consensus 156 p~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 156 PDRVLMVAAHQWDLIGAR 173 (175)
T ss_pred HHHeEeEecChhhHHHHh
Confidence 123789999999999864
No 120
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00031 Score=61.50 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=89.8
Q ss_pred CCcEEEEecCCccccC-----chhhh----------hcCCCcc-cCC-------------hHHHHHHHHcCCCCCCHHHH
Q 024759 109 GKDIWILDVDDSLITH-----VDFYA----------QNGFGTE-IFD-------------VTALINYLAQGISPALPESL 159 (263)
Q Consensus 109 g~~avVfDIDeTll~n-----~~y~~----------~~~~g~~-~y~-------------~~~~~~wv~~~~~paip~~l 159 (263)
..++|+||+|-|++.- ...|. ....|++ +|- ..+...++...+....|++.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~ 94 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIR 94 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHH
Confidence 3579999999999863 11110 0111221 221 24566677777888899999
Q ss_pred HHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC---cc-eeeeecCCCC------CCcchhhhhHHHHHHHHh-c
Q 024759 160 KLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS---WE-KLILRETGEW------NDTTQRAHKSAERRKLVE-S 228 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~---~~-~Lilr~~~~~------~~~~~~~yKs~~R~~l~~-~ 228 (263)
+|...|+++|.+|+++||--....+.....| |+|. +. .|.+-.++.+ ....+..-|++..+.+.+ .
T Consensus 95 eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L---gi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~ 171 (227)
T KOG1615|consen 95 ELVSRLHARGTQVYLISGGFRQLIEPVAEQL---GIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY 171 (227)
T ss_pred HHHHHHHHcCCeEEEEcCChHHHHHHHHHHh---CCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC
Confidence 9999999999999999997644444444433 6664 22 2332222211 122344568887777765 3
Q ss_pred CCeEEEEeCCCccccCCCCccceE
Q 024759 229 GYRIIGNMGDQWCDLLGDYPGHRT 252 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G~~~g~r~ 252 (263)
.|.-+.+|||--+|+..-+.|.-+
T Consensus 172 ~~~~~~mvGDGatDlea~~pa~af 195 (227)
T KOG1615|consen 172 NYKTIVMVGDGATDLEAMPPADAF 195 (227)
T ss_pred ChheeEEecCCccccccCCchhhh
Confidence 456899999999999976544433
No 121
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.66 E-value=0.00015 Score=60.94 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCC-C-----cchhh--hhHHHHHHH--
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWN-D-----TTQRA--HKSAERRKL-- 225 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~-~-----~~~~~--yKs~~R~~l-- 225 (263)
|++.++++.+++.|++|+++|+-. +.....-++..|++.. .++-....+.. . -.... -|...-+++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~---~~~i~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~ 167 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP---DEIIEPIAERLGIDDD-NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYI 167 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE---HHHHHHHHHHTTSSEG-GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCce-EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHH
Confidence 455599999999999999999986 4556666778899862 22211111000 0 00011 276666666
Q ss_pred -H--hcCCeEEEEeCCCccccC
Q 024759 226 -V--ESGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 226 -~--~~Gy~Iv~~iGDq~sDl~ 244 (263)
. ..++..+..+||..+|+.
T Consensus 168 ~~~~~~~~~~~~~iGDs~~D~~ 189 (192)
T PF12710_consen 168 RDEEDIDPDRVIAIGDSINDLP 189 (192)
T ss_dssp HHHHTHTCCEEEEEESSGGGHH
T ss_pred HhhcCCCCCeEEEEECCHHHHH
Confidence 1 246789999999999974
No 122
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.65 E-value=0.00015 Score=70.02 Aligned_cols=123 Identities=22% Similarity=0.218 Sum_probs=84.6
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
..++.||+|||||+..+... .| -.-..|+.=---++.+||......|++|.|+|.|+-.|...|.
T Consensus 373 ~n~kiVVsDiDGTITkSD~~--Gh-------------v~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTr 437 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDAL--GH-------------VKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTR 437 (580)
T ss_pred CCCcEEEEecCCcEEehhhH--HH-------------HHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhh
Confidence 45678999999999865211 01 1111233333467889999999999999999999998888887
Q ss_pred HHH---HHcCCCCcce-eeeecCCC-------CCCcchhhhhHHHHHHHHhcCCeE---EEEeCCCccccCC
Q 024759 188 SNL---KNVGYHSWEK-LILRETGE-------WNDTTQRAHKSAERRKLVESGYRI---IGNMGDQWCDLLG 245 (263)
Q Consensus 188 ~nL---~~~G~~~~~~-Lilr~~~~-------~~~~~~~~yKs~~R~~l~~~Gy~I---v~~iGDq~sDl~G 245 (263)
.-| .+.||.-|+. ++|.++.- .-.+....+|.+..+.|+..+..- .+=+|...+|...
T Consensus 438 sylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNriTDvis 509 (580)
T COG5083 438 SYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVIS 509 (580)
T ss_pred hHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccchhhee
Confidence 655 4678877653 66655431 012234568999999998865432 4668999999874
No 123
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.64 E-value=0.0004 Score=65.12 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc--eeeeecCCC---CCC-cchhhhhHHHHHH
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE--KLILRETGE---WND-TTQRAHKSAERRK 224 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~--~Lilr~~~~---~~~-~~~~~yKs~~R~~ 224 (263)
..+..|++.++++.|++.|+++.++||-.... +...+++.|+...- .+-...... ..+ .-....|.+..++
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~---~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~ 255 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYF---ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTR 255 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchh---HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHH
Confidence 46789999999999999999999999987543 33455566775311 111110000 000 0011235554444
Q ss_pred HHh-cC--CeEEEEeCCCccccCCCC
Q 024759 225 LVE-SG--YRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 225 l~~-~G--y~Iv~~iGDq~sDl~G~~ 247 (263)
+.+ .| ..-+..|||..+|+....
T Consensus 256 la~~lgi~~~qtIaVGDg~NDl~m~~ 281 (322)
T PRK11133 256 LAQEYEIPLAQTVAIGDGANDLPMIK 281 (322)
T ss_pred HHHHcCCChhhEEEEECCHHHHHHHH
Confidence 433 23 235889999999998643
No 124
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.62 E-value=0.00031 Score=65.39 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=69.3
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
++++|+|+|+||-...-- ..+-.+- .-.++.+++.++++.|+++|+++.++|+.++ +.+.+-
T Consensus 3 ~k~~v~DlDnTlw~gv~~--e~g~~~i-------------~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~---~~a~~~ 64 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLG--EDGIDNL-------------NLSPLHKTLQEKIKTLKKQGFLLALASKNDE---DDAKKV 64 (320)
T ss_pred eEEEEEcCCCCCCCCEEc--cCCcccc-------------ccCccHHHHHHHHHHHHhCCCEEEEEcCCCH---HHHHHH
Confidence 679999999999864210 0100000 0124579999999999999999999999985 455566
Q ss_pred HHH----cCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCCC
Q 024759 190 LKN----VGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 190 L~~----~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~ 247 (263)
|++ .|...+-..+.-. |++++ ..++.... ++ .-+..=+.+|||+..|+.+..
T Consensus 65 l~~~~~~~~~~~~f~~~~~~---~~pk~-~~i~~~~~-~l-~i~~~~~vfidD~~~d~~~~~ 120 (320)
T TIGR01686 65 FERRKDFILQAEDFDARSIN---WGPKS-ESLRKIAK-KL-NLGTDSFLFIDDNPAERANVK 120 (320)
T ss_pred HHhCccccCcHHHeeEEEEe---cCchH-HHHHHHHH-Hh-CCCcCcEEEECCCHHHHHHHH
Confidence 776 5554322222111 22322 22222211 12 134556889999999998753
No 125
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.59 E-value=0.0002 Score=64.92 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=62.7
Q ss_pred CCcEEEEecCCccccCc------hhhhh-c-CC---CcccCC--hHHHHHHH----HcCCC-CCCHHHHHHHHHHHHCCC
Q 024759 109 GKDIWILDVDDSLITHV------DFYAQ-N-GF---GTEIFD--VTALINYL----AQGIS-PALPESLKLYRRLLRLGF 170 (263)
Q Consensus 109 g~~avVfDIDeTll~n~------~y~~~-~-~~---g~~~y~--~~~~~~wv----~~~~~-paip~~l~l~~~l~~~G~ 170 (263)
..--||||||+||+-.. .++.. . .. +..... .+.+.+|+ ...+. +--+.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 44578999999999642 11111 0 00 001111 24566776 33433 344668899999999999
Q ss_pred EEEEEcCCCcccHHHHHHHHHHcCCCCc
Q 024759 171 KIVLLTGRMEPSRNFTESNLKNVGYHSW 198 (263)
Q Consensus 171 ~I~~iTgR~e~~r~~T~~nL~~~G~~~~ 198 (263)
.|+-+|.|.+..+..|.+.|++.|+..-
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~fs 126 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDFS 126 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999863
No 126
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.57 E-value=0.00017 Score=67.26 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=48.4
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC----CCEEEEEcCCCcccHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL----GFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~----G~~I~~iTgR~e~~r~~T~ 187 (263)
+++||+||||... .+++|++.++++.|+++ |..++|+|+..-..+..-.
T Consensus 2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~ 54 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARA 54 (321)
T ss_pred EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHH
Confidence 7899999999875 25599999999999998 9999999998765555545
Q ss_pred HHH-HHcCCCC
Q 024759 188 SNL-KNVGYHS 197 (263)
Q Consensus 188 ~nL-~~~G~~~ 197 (263)
+-| ++.|++.
T Consensus 55 ~~l~~~lG~~~ 65 (321)
T TIGR01456 55 EEISSLLGVDV 65 (321)
T ss_pred HHHHHHcCCCC
Confidence 555 7888864
No 127
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00045 Score=64.61 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=85.6
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcC-CCCCCHHHHHHHHHHHHCC-CEEEEEcCCCcccHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQG-ISPALPESLKLYRRLLRLG-FKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~-~~paip~~l~l~~~l~~~G-~~I~~iTgR~e~~r~~T~~n 189 (263)
.+|-|||+|+..+- .-.. --..|..|.... ..+++||+-.+|+.|.+.| ..|||+|+-+...-+.-.+-
T Consensus 163 giISDiDDTV~~T~-------V~~~--~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~ef 233 (373)
T COG4850 163 GIISDIDDTVKVTG-------VTEG--PRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEF 233 (373)
T ss_pred eeeeccccceEecc-------cccc--hHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHH
Confidence 68899999998761 1100 124688888775 4689999999999999999 89999999998877777788
Q ss_pred HHHcCCCCcceeeeecCC---CCCCcchhhh-hHHHHHHHHhcCCeEEEEeCCCc-cccC
Q 024759 190 LKNVGYHSWEKLILRETG---EWNDTTQRAH-KSAERRKLVESGYRIIGNMGDQW-CDLL 244 (263)
Q Consensus 190 L~~~G~~~~~~Lilr~~~---~~~~~~~~~y-Ks~~R~~l~~~Gy~Iv~~iGDq~-sDl~ 244 (263)
|.+.+||. ..++||.=+ +.-..+...- +...|.-+.+-+-+=...+||+= .|..
T Consensus 234 i~~~~~P~-GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~Dpe 292 (373)
T COG4850 234 ITNRNFPY-GPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPE 292 (373)
T ss_pred HhcCCCCC-CchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHH
Confidence 88889995 667777322 1011111111 34456567766666677888875 5543
No 128
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.56 E-value=0.00043 Score=69.66 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=85.4
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHH-cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH-
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLA-QGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES- 188 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~-~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~- 188 (263)
+.||-|||||+....- |....- -|++=...|+.+||.+..+.|++++|+|.|.-.|...|..
T Consensus 531 kIVISDIDGTITKSDv----------------LGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~y 594 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDV----------------LGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQY 594 (738)
T ss_pred cEEEecCCCceEhhhh----------------hhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHH
Confidence 4678899999986411 111111 1334445789999999999999999999999888888876
Q ss_pred --HHHHcCCCCc-ceeeeecCCCC-------CCcchhhhhHHHHHHHHh----cCCeEEEEeCCCccccC-----CCCcc
Q 024759 189 --NLKNVGYHSW-EKLILRETGEW-------NDTTQRAHKSAERRKLVE----SGYRIIGNMGDQWCDLL-----GDYPG 249 (263)
Q Consensus 189 --nL~~~G~~~~-~~Lilr~~~~~-------~~~~~~~yKs~~R~~l~~----~Gy~Iv~~iGDq~sDl~-----G~~~g 249 (263)
|+++-|..-. .-++|.|++-. -.+....||-++...|+. .+.---|-+|.+.+|.. |-+.
T Consensus 595 L~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~- 673 (738)
T KOG2116|consen 595 LKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPL- 673 (738)
T ss_pred HHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCc-
Confidence 5555666443 34777766520 012235678777777775 33446888999999987 3443
Q ss_pred ceEEEc
Q 024759 250 HRTFKL 255 (263)
Q Consensus 250 ~r~fkL 255 (263)
.|.|.+
T Consensus 674 ~RIFtI 679 (738)
T KOG2116|consen 674 SRIFTI 679 (738)
T ss_pred cceEEE
Confidence 366643
No 129
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.51 E-value=0.00025 Score=64.54 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHH-CCCEEEEEcCCCcccHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLR-LGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~-~G~~I~~iTgR~e~~r~~T~~ 188 (263)
..++++|+||||++..+.- ......+.+.+.++.|.+ .|+.|+++|||+.... .+
T Consensus 14 ~~li~~D~DGTLl~~~~~p---------------------~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~---~~ 69 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHP---------------------DQVVVPDNILQGLQLLATANDGALALISGRSMVEL---DA 69 (266)
T ss_pred CEEEEEecCCCCCCCCCCc---------------------ccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHH---HH
Confidence 4689999999999741100 022455889999999998 7999999999995433 34
Q ss_pred HHHHcC
Q 024759 189 NLKNVG 194 (263)
Q Consensus 189 nL~~~G 194 (263)
++...+
T Consensus 70 ~~~~~~ 75 (266)
T PRK10187 70 LAKPYR 75 (266)
T ss_pred hcCccc
Confidence 444333
No 130
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.45 E-value=0.00077 Score=59.75 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
.+...+.+||-|||-.. ..|+|++.+.++.|+.++.+|=|+|+-+.+.+....
T Consensus 5 ~~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~ 57 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLH 57 (262)
T ss_pred cccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHH
Confidence 34578999999998653 248899999999999999999999999988888889
Q ss_pred HHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCc-cccCCCC
Q 024759 188 SNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQW-CDLLGDY 247 (263)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~-sDl~G~~ 247 (263)
+.|.+.||..-++=|..+ -...|+-++++++|.-..+.|.. .||.|..
T Consensus 58 ~rL~rlgf~v~eeei~ts------------l~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 58 ERLQRLGFDVSEEEIFTS------------LPAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHHhCCCccHHHhcCc------------cHHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 999999998632222221 23567888899999998888887 9999864
No 131
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.43 E-value=0.00034 Score=62.38 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=43.3
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
.|+.|+|||||++-. +..+..|...++++++.++|+.+++.|||+... ..+-++
T Consensus 3 li~tDlDGTLl~~~~-----------------------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~---~~~~~~ 56 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD-----------------------GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHS---YKELQK 56 (249)
T ss_pred EEEEcCCCcCcCCCC-----------------------CChHHHHHHHHHHHHhhccCceEEEEcCCCHHH---HHHHHh
Confidence 688999999997310 022455889999999999999999999999543 233344
Q ss_pred HcCCCC
Q 024759 192 NVGYHS 197 (263)
Q Consensus 192 ~~G~~~ 197 (263)
..|.+.
T Consensus 57 ~~~~~~ 62 (249)
T TIGR01485 57 QKPLLT 62 (249)
T ss_pred cCCCCC
Confidence 445543
No 132
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.38 E-value=0.00036 Score=71.21 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
..++.|++||||||+++.. ...+.+.+.++.|+++|+.+++.|||+.....
T Consensus 414 ~~~KLIfsDLDGTLLd~d~--------------------------~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~--- 464 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT--------------------------YSYSTALDALRLLKDKELPLVFCSAKTMGEQD--- 464 (694)
T ss_pred ceeeEEEEECcCCCcCCCC--------------------------ccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHH---
Confidence 4567999999999998611 12256788999999999999999999965433
Q ss_pred HHHHHcCCC
Q 024759 188 SNLKNVGYH 196 (263)
Q Consensus 188 ~nL~~~G~~ 196 (263)
.-++..|+.
T Consensus 465 ~l~~~Lgl~ 473 (694)
T PRK14502 465 LYRNELGIK 473 (694)
T ss_pred HHHHHcCCC
Confidence 344455553
No 133
>PLN02423 phosphomannomutase
Probab=97.36 E-value=0.00037 Score=62.59 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=35.2
Q ss_pred CCcEEE-EecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCc
Q 024759 109 GKDIWI-LDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRME 180 (263)
Q Consensus 109 g~~avV-fDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e 180 (263)
++++++ |||||||++. +...-|.+.+.+++|+++ +.+++.|||.-
T Consensus 5 ~~~~i~~~D~DGTLl~~--------------------------~~~i~~~~~~ai~~l~~~-i~fviaTGR~~ 50 (245)
T PLN02423 5 KPGVIALFDVDGTLTAP--------------------------RKEATPEMLEFMKELRKV-VTVGVVGGSDL 50 (245)
T ss_pred ccceEEEEeccCCCcCC--------------------------CCcCCHHHHHHHHHHHhC-CEEEEECCcCH
Confidence 455566 9999999965 112337889999999977 99999999953
No 134
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0015 Score=56.67 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=73.9
Q ss_pred CcEEEEecCCccccCch-hhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCc--------
Q 024759 110 KDIWILDVDDSLITHVD-FYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRME-------- 180 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~-y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e-------- 180 (263)
.+++++|-|||+..-.+ |- .++++| ..+|++++.+..|.+.|++++++||-+.
T Consensus 5 ~k~lflDRDGtin~d~~~yv------------~~~~~~------~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~ 66 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------------DSLDDF------QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTE 66 (181)
T ss_pred CcEEEEcCCCceecCCCccc------------CcHHHh------ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccH
Confidence 67999999999986433 21 122332 4568899999999999999999999542
Q ss_pred c-c---HHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhc---CCeEEEEeCCCccccCCC-CccceE
Q 024759 181 P-S---RNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVES---GYRIIGNMGDQWCDLLGD-YPGHRT 252 (263)
Q Consensus 181 ~-~---r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~---Gy~Iv~~iGDq~sDl~G~-~~g~r~ 252 (263)
. . -+.-.+.|++.|... +..+.-+.-....+.-..=|.++.....++ .-....+|||..+|+..+ +.|.+.
T Consensus 67 ~~f~~~~~~m~~~l~~~gv~i-d~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~ 145 (181)
T COG0241 67 ADFDKLHNKMLKILASQGVKI-DGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKG 145 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCc
Confidence 1 1 122346788889754 444443322101111111122322222221 123577999999999864 344444
Q ss_pred EE
Q 024759 253 FK 254 (263)
Q Consensus 253 fk 254 (263)
+.
T Consensus 146 ~~ 147 (181)
T COG0241 146 VL 147 (181)
T ss_pred eE
Confidence 43
No 135
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.17 E-value=0.0035 Score=55.07 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=51.0
Q ss_pred CCCHHHHHHHH-HHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeec----C-CCCCCcchhhhhHHHHHHHH
Q 024759 153 PALPESLKLYR-RLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRE----T-GEWNDTTQRAHKSAERRKLV 226 (263)
Q Consensus 153 paip~~l~l~~-~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~----~-~~~~~~~~~~yKs~~R~~l~ 226 (263)
...|+++++++ .++++|++++++|+.++.. .....+..|+-.-++++-.. . +...+ ..-+-.++.+.|+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~---~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g--~~c~g~~Kv~rl~ 168 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPL---VEAVYFDSNFIHRLNLIASQIERGNGGWVLP--LRCLGHEKVAQLE 168 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH---HHHHHHhccccccCcEEEEEeEEeCCceEcC--ccCCChHHHHHHH
Confidence 46799999996 7888999999999988543 33444443432213333111 1 11001 1123333333333
Q ss_pred h---cCCeEEEEeCCCccccC
Q 024759 227 E---SGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 227 ~---~Gy~Iv~~iGDq~sDl~ 244 (263)
+ ..+.+.-..||..+|+.
T Consensus 169 ~~~~~~~~~~~aYsDS~~D~p 189 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDSKQDNP 189 (210)
T ss_pred HHhCCChhheEEecCCcccHH
Confidence 2 35666778999999986
No 136
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.11 E-value=0.0008 Score=59.38 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=36.0
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
.+++|+|||||+..+. +++..+.++ ++++|+.++++|||+... -.+-|.
T Consensus 1 li~~DlDgTLl~~~~~---------------------------~~~~~~~~~-~~~~gi~~viaTGR~~~~---v~~~~~ 49 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG---------------------------LASFVELLR-GSGDAVGFGIATGRSVES---AKSRYA 49 (236)
T ss_pred CeEEeccccccCCHHH---------------------------HHHHHHHHH-hcCCCceEEEEeCCCHHH---HHHHHH
Confidence 3789999999974211 112225666 689999999999999544 334445
Q ss_pred HcCCC
Q 024759 192 NVGYH 196 (263)
Q Consensus 192 ~~G~~ 196 (263)
..++.
T Consensus 50 ~l~l~ 54 (236)
T TIGR02471 50 KLNLP 54 (236)
T ss_pred hCCCC
Confidence 55654
No 137
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.10 E-value=0.00091 Score=56.47 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=69.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
++.+|+|+||||+..+.--...... ..+... ...=...--...-|++.+|++.|.+. ++|++.|.-++...+...+.
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~-~~~~~~-~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ 77 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDAD-FKVPVL-IDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDI 77 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCc-eEEEEE-ecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHH
Confidence 4689999999999652111000000 000000 00000000123568999999999887 99999999887766666666
Q ss_pred HHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC--CeEEEEeCCCccccCCCC
Q 024759 190 LKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG--YRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 190 L~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G--y~Iv~~iGDq~sDl~G~~ 247 (263)
|.-.+.. .+..+-|.... ..++ ...| .|..-| -+=+.+|||...|+.+.+
T Consensus 78 ldp~~~~-f~~~l~r~~~~-~~~~-~~~K-----~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 78 LDRGGKV-ISRRLYRESCV-FTNG-KYVK-----DLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HCcCCCE-EeEEEEccccE-EeCC-CEEe-----EchhcCCChhhEEEEeCChhhhccCc
Confidence 6533311 24455555432 1111 1223 222222 223789999999998764
No 138
>PLN03017 trehalose-phosphatase
Probab=97.10 E-value=0.0012 Score=63.10 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHhhccc-CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEE
Q 024759 96 AFKYAKTVKLA-GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVL 174 (263)
Q Consensus 96 A~~ya~~~~~~-~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~ 174 (263)
|...++++... ..++.++++|+||||+.-.+. ...+.+.+++.+.+++|. +|+.+++
T Consensus 96 al~~~~~~~~~~~~k~~llflD~DGTL~Piv~~---------------------p~~a~i~~~~~~aL~~La-~~~~vaI 153 (366)
T PLN03017 96 ALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDD---------------------PDKAFMSSKMRRTVKKLA-KCFPTAI 153 (366)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCC---------------------cccccCCHHHHHHHHHHh-cCCcEEE
Confidence 44444444433 345568889999999942100 002356689999999999 7899999
Q ss_pred EcCCCcc
Q 024759 175 LTGRMEP 181 (263)
Q Consensus 175 iTgR~e~ 181 (263)
+|||+-.
T Consensus 154 vSGR~~~ 160 (366)
T PLN03017 154 VTGRCID 160 (366)
T ss_pred EeCCCHH
Confidence 9999843
No 139
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.98 E-value=0.0028 Score=57.19 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC-cceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS-WEKLILRETGEWNDTTQRAHKSAERRKLVESGYR 231 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~ 231 (263)
..+.++++++++|+++|..+.++|+=+...+ .. |...|+.. ++.++........+++...|......-... -.
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~---l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~--Pe 186 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDRLR-LL---LLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVK--PE 186 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HH---hhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCC--hH
Confidence 4677889999999999999999999776655 33 33344422 455555443321333344555443322222 23
Q ss_pred EEEEeCCCc-cccCCC-CccceEEEcCCCCC
Q 024759 232 IIGNMGDQW-CDLLGD-YPGHRTFKLPNPVF 260 (263)
Q Consensus 232 Iv~~iGDq~-sDl~G~-~~g~r~fkLPNp~Y 260 (263)
-+..|||.. +|+.|+ +.|-+++..=|+++
T Consensus 187 e~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 187 ECVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred HeEEecCccccccHhHHHcCCEEEEEccccc
Confidence 588999999 899987 47888887777654
No 140
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.97 E-value=0.0063 Score=51.27 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHH-------------------cCCCCCCHHHHHHHHHHHH
Q 024759 107 GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLA-------------------QGISPALPESLKLYRRLLR 167 (263)
Q Consensus 107 ~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~-------------------~~~~paip~~l~l~~~l~~ 167 (263)
..+|..+|+|+|+||+.+..-.. . ..+..+.. .......|++.++++.|.+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~ 72 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPT---L-------SEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK 72 (156)
T ss_pred cCCceEEEEeCCCCcccccccCc---c-------chhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh
Confidence 36788999999999997532110 0 00111100 0112357899999999985
Q ss_pred CCCEEEEEcCCCcccHHHHHHHHHHcCCCCc-ceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC
Q 024759 168 LGFKIVLLTGRMEPSRNFTESNLKNVGYHSW-EKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 168 ~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~-~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~ 246 (263)
. +++++.|+.++...+...+.|.-.+-. + +.++-|.... ....|.- ..+-...-+-+..|+|+..-....
T Consensus 73 ~-yel~I~T~~~~~yA~~vl~~ldp~~~~-F~~ri~~rd~~~-----~~~~KdL--~~i~~~d~~~vvivDd~~~~~~~~ 143 (156)
T TIGR02250 73 L-YEMHVYTMGTRAYAQAIAKLIDPDGKY-FGDRIISRDESG-----SPHTKSL--LRLFPADESMVVIIDDREDVWPWH 143 (156)
T ss_pred h-cEEEEEeCCcHHHHHHHHHHhCcCCCe-eccEEEEeccCC-----CCccccH--HHHcCCCcccEEEEeCCHHHhhcC
Confidence 4 999999999977666666666443311 2 3344454321 1223431 122223355688899988544443
No 141
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.97 E-value=0.013 Score=52.56 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=85.5
Q ss_pred CCCcEEEEecCCccccC-chhhhhcCCCccc--------CChHHHHHHHHc-------------------CCCCCCHHHH
Q 024759 108 DGKDIWILDVDDSLITH-VDFYAQNGFGTEI--------FDVTALINYLAQ-------------------GISPALPESL 159 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n-~~y~~~~~~g~~~--------y~~~~~~~wv~~-------------------~~~paip~~l 159 (263)
..+-.++||-|.|+++- +.-....-.+.+. |-..-|++++.. ...|..|+++
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv 90 (256)
T KOG3120|consen 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMV 90 (256)
T ss_pred CCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHH
Confidence 34558999999999973 3222111111111 111248888653 3579999999
Q ss_pred HHHHHHHHCCC-EEEEEcCCCcccHHHHHHHHHHcCCCC--------------cceeeeecCCCC---CCcchhhhhHHH
Q 024759 160 KLYRRLLRLGF-KIVLLTGRMEPSRNFTESNLKNVGYHS--------------WEKLILRETGEW---NDTTQRAHKSAE 221 (263)
Q Consensus 160 ~l~~~l~~~G~-~I~~iTgR~e~~r~~T~~nL~~~G~~~--------------~~~Lilr~~~~~---~~~~~~~yKs~~ 221 (263)
++++.+++.|. ++++||.-.. =.-++||+.+|+.. -.+|.+++-... +.+|.---|-..
T Consensus 91 ~lik~~ak~g~~eliIVSDaNs---fFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~V 167 (256)
T KOG3120|consen 91 RLIKSAAKLGCFELIIVSDANS---FFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLV 167 (256)
T ss_pred HHHHHHHhCCCceEEEEecCch---hHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHH
Confidence 99999999996 9999998653 34568999998864 135666653211 123333445444
Q ss_pred HHHHHh----c--CCeEEEEeCCCccccCC
Q 024759 222 RRKLVE----S--GYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 222 R~~l~~----~--Gy~Iv~~iGDq~sDl~G 245 (263)
..+++. + .|.-+.++||--+|+--
T Consensus 168 l~~~~~s~~~~gv~yer~iYvGDG~nD~CP 197 (256)
T KOG3120|consen 168 LDELVASQLKDGVRYERLIYVGDGANDFCP 197 (256)
T ss_pred HHHHHHHHhhcCCceeeEEEEcCCCCCcCc
Confidence 444433 2 36578899999999853
No 142
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.88 E-value=0.0046 Score=62.06 Aligned_cols=80 Identities=26% Similarity=0.322 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
..++.|++.+++++|+++|++++++||.++ .....-++..|++. +... . + .-|.+.-++++++|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~---~~a~~ia~~lgi~~-----~~~~---~--p--~~K~~~v~~l~~~~- 466 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNR---KTAKAVAKELGINV-----RAEV---L--P--DDKAALIKELQEKG- 466 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCH---HHHHHHHHHcCCcE-----EccC---C--h--HHHHHHHHHHHHcC-
Confidence 457889999999999999999999999874 45566777788852 1111 0 1 12566666676665
Q ss_pred eEEEEeCCCccccCCC
Q 024759 231 RIIGNMGDQWCDLLGD 246 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G~ 246 (263)
+.++++||..+|....
T Consensus 467 ~~v~~VGDg~nD~~al 482 (562)
T TIGR01511 467 RVVAMVGDGINDAPAL 482 (562)
T ss_pred CEEEEEeCCCccHHHH
Confidence 4688999999999753
No 143
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0017 Score=59.53 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=53.0
Q ss_pred CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCC-CEEEEEcCCCcccHHH
Q 024759 107 GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLG-FKIVLLTGRMEPSRNF 185 (263)
Q Consensus 107 ~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G-~~I~~iTgR~e~~r~~ 185 (263)
..++.++++|.||||....++- + .+++.++++++++.|.++. ..|+++|||+....
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~p---------~------------~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l-- 71 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPHP---------E------------AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAEL-- 71 (266)
T ss_pred cccceEEEEeccccccccccCc---------c------------ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHH--
Confidence 4567899999999999864331 1 5788999999999999985 47999999995443
Q ss_pred HHHHHH--HcCCCCcceeeeecC
Q 024759 186 TESNLK--NVGYHSWEKLILRET 206 (263)
Q Consensus 186 T~~nL~--~~G~~~~~~Lilr~~ 206 (263)
.+++. ..|+-.......|..
T Consensus 72 -~~~~~v~~i~l~aehGa~~r~~ 93 (266)
T COG1877 72 -ERLFGVPGIGLIAEHGAEVRDP 93 (266)
T ss_pred -HHhcCCCCccEEEecceEEecC
Confidence 34443 222222344566443
No 144
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=96.81 E-value=0.0056 Score=54.69 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=87.7
Q ss_pred CCCcEEEEecCCccccCchhhhh------cCCCcccC-------------------------ChHHHHHHHHc-------
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQ------NGFGTEIF-------------------------DVTALINYLAQ------- 149 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~------~~~g~~~y-------------------------~~~~~~~wv~~------- 149 (263)
.+..+++||+|||++++-..|.. ..+|. +| ++.+|.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk-~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~ 86 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGK-PYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDR 86 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCC-CChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 34569999999999998655522 12232 21 33344554432
Q ss_pred --CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC--CCCcchhhhhHHHHHHH
Q 024759 150 --GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE--WNDTTQRAHKSAERRKL 225 (263)
Q Consensus 150 --~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~--~~~~~~~~yKs~~R~~l 225 (263)
.....+||+.+|++.|...|+.+.++|+++....+.-..+++.. |..+++.++ .++. .+++|+...--..++.+
T Consensus 87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~-~~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l 164 (222)
T KOG2914|consen 87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDI-FKNFSHVVL-GDDPEVKNGKPDPDIYLKAAKRL 164 (222)
T ss_pred hccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHH-HHhcCCCee-cCCccccCCCCCchHHHHHHHhc
Confidence 45678999999999999999999999999877766656665521 222334444 3331 13444332222223333
Q ss_pred HhcCCeEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 226 VESGYRIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 226 ~~~Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
....-.=..++.|...=+..+ ..|...+-+|+
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 322212356788887666543 35667776666
No 145
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.76 E-value=0.0027 Score=56.70 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCC-CEEEEEcCCC
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLG-FKIVLLTGRM 179 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G-~~I~~iTgR~ 179 (263)
++.+++||+||||+...+. | ..+.+-|+++++++.|.+.. ..|+++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~---------p------------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPD---------P------------DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCC---------C------------cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3568999999999974110 0 02456699999999998875 5688999996
No 146
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.75 E-value=0.0052 Score=61.47 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHCC-CEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLG-FKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G-~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
..++.|++.+++++|+++| +++.++||.+ +..+.+-+++.|+.. .+-+-. + .-|...-+++..+|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~---~~~a~~i~~~lgi~~---~f~~~~----p----~~K~~~v~~l~~~~ 447 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDN---RSAAEAVAAELGIDE---VHAELL----P----EDKLAIVKELQEEG 447 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCC---HHHHHHHHHHhCCCe---eeccCC----H----HHHHHHHHHHHHcC
Confidence 4578899999999999999 9999999987 456667788889854 222111 1 12555666666665
Q ss_pred CeEEEEeCCCccccCCC
Q 024759 230 YRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~ 246 (263)
. .++++||..+|+...
T Consensus 448 ~-~v~~vGDg~nD~~al 463 (556)
T TIGR01525 448 G-VVAMVGDGINDAPAL 463 (556)
T ss_pred C-EEEEEECChhHHHHH
Confidence 5 788999999998764
No 147
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=96.73 E-value=0.0018 Score=54.97 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhh--HHHHHHHHhc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHK--SAERRKLVES 228 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yK--s~~R~~l~~~ 228 (263)
..++.|++.++++.|++.|+++.++||-. ...+..-.+..|+.. ..+.-... ++|.. | ....+.+..+
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~~--~~v~a~~~---~kP~~--k~~~~~i~~l~~~ 194 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN---ESTASAIAKQLGIFD--SIVFARVI---GKPEP--KIFLRIIKELQVK 194 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE---HHHHHHHHHHTTSCS--EEEEESHE---TTTHH--HHHHHHHHHHTCT
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc---ccccccccccccccc--cccccccc---ccccc--hhHHHHHHHHhcC
Confidence 35788999999999999999999999977 445667777889853 22221110 12222 3 4444455533
Q ss_pred CCeEEEEeCCCccccCC
Q 024759 229 GYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 229 Gy~Iv~~iGDq~sDl~G 245 (263)
+. .++++||..+|...
T Consensus 195 ~~-~v~~vGDg~nD~~a 210 (215)
T PF00702_consen 195 PG-EVAMVGDGVNDAPA 210 (215)
T ss_dssp GG-GEEEEESSGGHHHH
T ss_pred CC-EEEEEccCHHHHHH
Confidence 33 79999999999864
No 148
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.71 E-value=0.0044 Score=61.75 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHHHHHCCC-EEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 151 ISPALPESLKLYRRLLRLGF-KIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~-~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
.+++.|++.+.+++|+++|+ ++.++||.+ +..+.+.+++.|+..+..-.+ + .-|...-++++.+|
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~--p---------~~K~~~i~~l~~~~ 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELL--P---------EDKLEIVKELREKY 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccC--c---------HHHHHHHHHHHhcC
Confidence 46788999999999999999 999999987 556778888889864211010 1 12666666777665
Q ss_pred CeEEEEeCCCccccCCC
Q 024759 230 YRIIGNMGDQWCDLLGD 246 (263)
Q Consensus 230 y~Iv~~iGDq~sDl~G~ 246 (263)
+.++++||..+|+...
T Consensus 426 -~~v~~vGDg~nD~~al 441 (536)
T TIGR01512 426 -GPVAMVGDGINDAPAL 441 (536)
T ss_pred -CEEEEEeCCHHHHHHH
Confidence 5788999999999753
No 149
>PLN02811 hydrolase
Probab=96.69 E-value=0.0037 Score=54.64 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecC--CCCCCcch-hhhhHHHHHHHHh
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRET--GEWNDTTQ-RAHKSAERRKLVE 227 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~--~~~~~~~~-~~yKs~~R~~l~~ 227 (263)
..++.|++.++++.|+++|+++.++||..... .+...++..|+..+.+.+.-.+ +....||. ..|....++ +..
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~-~~~ 152 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARR-FED 152 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHH-hCC
Confidence 35678999999999999999999999976432 2223333334433333344444 21122332 233322222 210
Q ss_pred --cCCeEEEEeCCCccccCCC-CccceEEEcCC
Q 024759 228 --SGYRIIGNMGDQWCDLLGD-YPGHRTFKLPN 257 (263)
Q Consensus 228 --~Gy~Iv~~iGDq~sDl~G~-~~g~r~fkLPN 257 (263)
-...-+.+|||..+|+.++ ..|-+++-+++
T Consensus 153 ~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~ 185 (220)
T PLN02811 153 GPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPD 185 (220)
T ss_pred CCCCccceEEEeccHhhHHHHHHCCCeEEEEeC
Confidence 0123488999999999976 34666666544
No 150
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0037 Score=57.99 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=54.3
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
++-+.++||-||.|-. ...++|++.+.++.|+++|-.|+|+||.+-..|+.-.
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~ 72 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYM 72 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHH
Confidence 6678999999996543 2368899999999999999999999999988888888
Q ss_pred HHHHHcCCC
Q 024759 188 SNLKNVGYH 196 (263)
Q Consensus 188 ~nL~~~G~~ 196 (263)
+-.++.||.
T Consensus 73 kK~~~lG~~ 81 (306)
T KOG2882|consen 73 KKFAKLGFN 81 (306)
T ss_pred HHHHHhCcc
Confidence 889999998
No 151
>PLN02151 trehalose-phosphatase
Probab=96.67 E-value=0.0052 Score=58.48 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=43.8
Q ss_pred HHHHHHhhcc-cCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEE
Q 024759 96 AFKYAKTVKL-AGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVL 174 (263)
Q Consensus 96 A~~ya~~~~~-~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~ 174 (263)
|...++++.. ...++.++++|+||||+.-.+. | ..+.+.|++++.++.|. .++.|++
T Consensus 83 a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~------------P---------~~A~~~~~~~~aL~~La-~~~~vaI 140 (354)
T PLN02151 83 ALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDD------------P---------DRAFMSKKMRNTVRKLA-KCFPTAI 140 (354)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCccCCCCCCC------------c---------ccccCCHHHHHHHHHHh-cCCCEEE
Confidence 3334444332 3345678999999999953211 0 13466799999999998 4679999
Q ss_pred EcCCCcc
Q 024759 175 LTGRMEP 181 (263)
Q Consensus 175 iTgR~e~ 181 (263)
||||+-.
T Consensus 141 vSGR~~~ 147 (354)
T PLN02151 141 VSGRCRE 147 (354)
T ss_pred EECCCHH
Confidence 9999843
No 152
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=96.49 E-value=0.0056 Score=63.20 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=41.0
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCCcc
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL-GFKIVLLTGRMEP 181 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~-G~~I~~iTgR~e~ 181 (263)
..+..++||+||||++....- ....+-+.+++.++.|.+. |..|+++|||+..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~---------------------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDP---------------------ELAVPDKELRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred ccceEEEEecCccccCCCCCc---------------------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 356799999999999752100 0234568999999999994 9999999999843
No 153
>PTZ00445 p36-lilke protein; Provisional
Probab=96.45 E-value=0.0074 Score=53.65 Aligned_cols=165 Identities=20% Similarity=0.201 Sum_probs=93.7
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHH---HcC
Q 024759 74 HYVADYMLSDQFLQDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYL---AQG 150 (263)
Q Consensus 74 ~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv---~~~ 150 (263)
+.++.|..+.++. ...--+.|..+.+.++. .|.++|++|+|.|++.- | -|+ | ++.. ..-
T Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~--~GIk~Va~D~DnTlI~~------H-sgG--~-----~~~~~~~~~~ 72 (219)
T PTZ00445 11 DAFKEYIESGLFD--HLNPHESADKFVDLLNE--CGIKVIASDFDLTMITK------H-SGG--Y-----IDPDNDDIRV 72 (219)
T ss_pred HHHHHHHHhcccc--cCCHHHHHHHHHHHHHH--cCCeEEEecchhhhhhh------h-ccc--c-----cCCCcchhhh
Confidence 4577787777764 44444556666666654 78999999999999972 1 111 1 1110 000
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc------------HHHHHHHHHH-----------cCCCC-ccee-eeec
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPS------------RNFTESNLKN-----------VGYHS-WEKL-ILRE 205 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~------------r~~T~~nL~~-----------~G~~~-~~~L-ilr~ 205 (263)
-....|....|++.|.+.|++|+++|=-++.. .+.-..-|++ +.||. |+.= -.++
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhh
Confidence 11356889999999999999999999766532 1222333442 23443 3211 0001
Q ss_pred CCCCCCcchhhhhHHHHHHHH-hcC--CeEEEEeCCCccccCCC-CccceEEEcCCC
Q 024759 206 TGEWNDTTQRAHKSAERRKLV-ESG--YRIIGNMGDQWCDLLGD-YPGHRTFKLPNP 258 (263)
Q Consensus 206 ~~~~~~~~~~~yKs~~R~~l~-~~G--y~Iv~~iGDq~sDl~G~-~~g~r~fkLPNp 258 (263)
.+ ..+|....|+--.+++. +-| +.-+.+|+|....+.++ ..|-.++-++++
T Consensus 153 ~g--l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 153 LG--LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hc--ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 11 12233334433112222 211 23488999999888765 467788877765
No 154
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.35 E-value=0.032 Score=51.51 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=68.7
Q ss_pred CChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc------eeeeecCCCCCC
Q 024759 138 FDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE------KLILRETGEWND 211 (263)
Q Consensus 138 y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~------~Lilr~~~~~~~ 211 (263)
++.+..++.+.+...++.||+.+|++.|+++|++++++|+=. +.....-|+++|+.... .|....++...+
T Consensus 106 ~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~---~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG 182 (277)
T TIGR01544 106 FPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI---GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKG 182 (277)
T ss_pred CCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeC
Confidence 566777777777788999999999999999999999999976 45666777778873211 122333332122
Q ss_pred cch----hhhhHHHHHH-----HH-hcCCeEEEEeCCCccccCCCC
Q 024759 212 TTQ----RAHKSAERRK-----LV-ESGYRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 212 ~~~----~~yKs~~R~~-----l~-~~Gy~Iv~~iGDq~sDl~G~~ 247 (263)
.+. ...|.+.-.+ +. ...+.=+.++||..+|+..+.
T Consensus 183 ~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 183 FKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred CCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 211 2234432211 11 023445679999999998654
No 155
>PLN02580 trehalose-phosphatase
Probab=96.33 E-value=0.011 Score=56.86 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
.++.+++||.||||..-.+ +| ..+.+-+++.+.++.|.+. ..|++||||+ ++.-.
T Consensus 117 ~k~~~LfLDyDGTLaPIv~------------~P---------d~A~~s~~~~~aL~~La~~-~~VAIVSGR~---~~~L~ 171 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVD------------DP---------DRALMSDAMRSAVKNVAKY-FPTAIISGRS---RDKVY 171 (384)
T ss_pred cCCeEEEEecCCccCCCCC------------Cc---------ccccCCHHHHHHHHHHhhC-CCEEEEeCCC---HHHHH
Confidence 4567899999999986411 01 1456778999999999988 4799999998 44444
Q ss_pred HHHH
Q 024759 188 SNLK 191 (263)
Q Consensus 188 ~nL~ 191 (263)
+++.
T Consensus 172 ~~l~ 175 (384)
T PLN02580 172 ELVG 175 (384)
T ss_pred HHhC
Confidence 5554
No 156
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.27 E-value=0.0021 Score=54.30 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=60.1
Q ss_pred cEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCC-HHHHHHHHHHHHCCCEEEEEcCCCcc--------
Q 024759 111 DIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPAL-PESLKLYRRLLRLGFKIVLLTGRMEP-------- 181 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~pai-p~~l~l~~~l~~~G~~I~~iTgR~e~-------- 181 (263)
+...||+||||...... ..|. ..+++| ..+ |++.+.+++|.+.|++|+++||-..-
T Consensus 1 Kia~fD~DgTLi~~~s~--------~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~ 65 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG--------KKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD 65 (159)
T ss_dssp SEEEE-SCTTTEE-STS--------TTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred CEEEEeCCCCccCCCCC--------CcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence 35789999999976221 1120 111222 122 35899999999999999999986321
Q ss_pred ---cHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe--------EEEEeCCCccc
Q 024759 182 ---SRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYR--------IIGNMGDQWCD 242 (263)
Q Consensus 182 ---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~--------Iv~~iGDq~sD 242 (263)
..+....-|+..|+|. .++.-...+.-++| +.++-..+.++ |+ =-.+|||..++
T Consensus 66 ~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP----~~GM~~~~~~~-~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 66 LENFHEKIENILKELGIPI--QVYAAPHKDPCRKP----NPGMWEFALKD-YNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTT----SSHHHHHHCCC-TSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCC----chhHHHHHHHh-ccccccccccceEEEeccCCC
Confidence 1244456677889884 33333332212333 23455554432 22 25799998555
No 157
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.12 E-value=0.014 Score=51.93 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHHcC--CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHc---CCCCc-ceeeeecCCCCCCcchhh
Q 024759 143 LINYLAQG--ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNV---GYHSW-EKLILRETGEWNDTTQRA 216 (263)
Q Consensus 143 ~~~wv~~~--~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~---G~~~~-~~Lilr~~~~~~~~~~~~ 216 (263)
|.+....+ ..++.|++.++++.|+++|++++++|+.+... ....++.. ++..+ +..+ ....- .++....
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~---~~~~~~~~~~~~L~~~f~~~f-d~~~g-~KP~p~~ 157 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA---QKLLFGHSDAGNLTPYFSGYF-DTTVG-LKTEAQS 157 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHhhccccchhhhcceEE-EeCcc-cCCCHHH
Confidence 55555443 35789999999999999999999999987433 23333332 22221 1122 11111 1222233
Q ss_pred hhHHHH-HHHHhcCCeEEEEeCCCccccCCC-CccceEEEc
Q 024759 217 HKSAER-RKLVESGYRIIGNMGDQWCDLLGD-YPGHRTFKL 255 (263)
Q Consensus 217 yKs~~R-~~l~~~Gy~Iv~~iGDq~sDl~G~-~~g~r~fkL 255 (263)
|..... ..+.. .-+.+|||...|+.++ ..|-+++.+
T Consensus 158 y~~i~~~lgv~p---~e~lfVgDs~~Di~AA~~AG~~ti~v 195 (220)
T TIGR01691 158 YVKIAGQLGSPP---REILFLSDIINELDAARKAGLHTGQL 195 (220)
T ss_pred HHHHHHHhCcCh---hHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 433222 11211 2377999999999876 346565544
No 158
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.026 Score=58.37 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.+++-|++.+.++.|+++|++++++||=.+. ...+-=++.|+..+.. =+.| +-|.+.-++++++|
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~---~A~~iA~~lGId~v~A-ellP----------edK~~~V~~l~~~g- 599 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRR---TAEAIAKELGIDEVRA-ELLP----------EDKAEIVRELQAEG- 599 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcChHhhec-cCCc----------HHHHHHHHHHHhcC-
Confidence 4577899999999999999999999996643 3334445668865311 1112 22888888998776
Q ss_pred eEEEEeCCCccccC
Q 024759 231 RIIGNMGDQWCDLL 244 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~ 244 (263)
+.++++||=.||=.
T Consensus 600 ~~VamVGDGINDAP 613 (713)
T COG2217 600 RKVAMVGDGINDAP 613 (713)
T ss_pred CEEEEEeCCchhHH
Confidence 68999999999965
No 159
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.01 E-value=0.02 Score=59.49 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc----ceeeeecCCC----------------CC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW----EKLILRETGE----------------WN 210 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~----~~Lilr~~~~----------------~~ 210 (263)
.+|+-|++.+.++.|++.|++|+++||..+.... .-=++.|+..- +.+ ..+... .-
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~---~IA~~lGI~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAK---ETARRLGLGTNIYTADVL-LKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHH---HHHHHcCCCCCCcCHHHh-cCCcchhhCCHHHHHHHHHhCCEE
Confidence 4588899999999999999999999998854333 33345577530 001 000000 00
Q ss_pred CcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 211 DTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 211 ~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
..-..+-|...-+.++++|+ +|+++||-.||-..
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDapA 549 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAPA 549 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHHH
Confidence 01123458788888888887 89999999999653
No 160
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.01 E-value=0.042 Score=50.81 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
..+.+||||+|+||+.... ....+.|.+.+-+++|++.|.-+++-|--..++. .
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV---~ 173 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHV---R 173 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------------------ccccCChHHHHHHHHHHHcCCEEEEecCCCHHHH---H
Confidence 4466999999999996510 0124558889999999999999999988774444 4
Q ss_pred HHHHHcCCCCcceeeeec
Q 024759 188 SNLKNVGYHSWEKLILRE 205 (263)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~ 205 (263)
..|++.|+..+..+++.+
T Consensus 174 ~sl~~~~L~~~Fd~ii~~ 191 (297)
T PF05152_consen 174 HSLKELKLEGYFDIIICG 191 (297)
T ss_pred HHHHHhCCccccEEEEeC
Confidence 555555666555666654
No 161
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=95.98 E-value=0.017 Score=60.98 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHH-HHCCCEEEEEcCCCcccHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRL-LRLGFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l-~~~G~~I~~iTgR~e~~r~~T 186 (263)
..+.++++|+||||+...+. ...+-|+++++++.| .+.|..|+++|||+ ++.-
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~---~~~L 647 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARS---RKTL 647 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCC---HHHH
Confidence 35689999999999965211 124458999999997 77899999999998 4344
Q ss_pred HHHH
Q 024759 187 ESNL 190 (263)
Q Consensus 187 ~~nL 190 (263)
.+|+
T Consensus 648 ~~~f 651 (854)
T PLN02205 648 ADWF 651 (854)
T ss_pred HHHh
Confidence 4555
No 162
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.94 E-value=0.026 Score=58.61 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.++..|++.+.++.|+++|++++++||.. ...+....++.|+..+.. +. | .-|...-++++++ .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~---~~~a~~ia~~lgi~~~~~--~~--------p--~~K~~~v~~l~~~-~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN---PRAAAAIAGELGIDFRAG--LL--------P--EDKVKAVTELNQH-A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCeecC--CC--------H--HHHHHHHHHHhcC-C
Confidence 45888999999999999999999999987 556677788889863211 11 1 1366666667644 3
Q ss_pred eEEEEeCCCccccCC
Q 024759 231 RIIGNMGDQWCDLLG 245 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G 245 (263)
.++++||..+|...
T Consensus 630 -~v~mvGDgiNDapA 643 (741)
T PRK11033 630 -PLAMVGDGINDAPA 643 (741)
T ss_pred -CEEEEECCHHhHHH
Confidence 69999999999764
No 163
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.93 E-value=0.043 Score=58.04 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC----------------CCCcch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE----------------WNDTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~~~~~ 214 (263)
.+|+-|++.+.++.|++.|++|+++||-.+. .+..-.++.|+.....-.+.+..- .-....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~---tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQE---TAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHH---HHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 3588999999999999999999999998743 444555677885322211111100 000112
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
..-|...-+.++++|+ +++++||-.+|...
T Consensus 603 P~~K~~iv~~lq~~g~-~v~mvGDGvND~pA 632 (884)
T TIGR01522 603 PEHKMKIVKALQKRGD-VVAMTGDGVNDAPA 632 (884)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcccHHH
Confidence 3457788888888886 79999999999874
No 164
>PLN02382 probable sucrose-phosphatase
Probab=95.92 E-value=0.034 Score=53.93 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=34.9
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
..+..|+.|+|||||++. +. .....+.-..+++++.++|+..++.|||+...
T Consensus 7 ~~~~lI~sDLDGTLL~~~--------~~---------------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~ 58 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDHH--------DP---------------ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL 58 (413)
T ss_pred CCCEEEEEcCCCcCcCCC--------Cc---------------cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH
Confidence 335588899999999751 00 01111233445578899999999999999544
No 165
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=95.89 E-value=0.03 Score=57.55 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.+|+-|++.+.+++|++.|++++.+||-.+..... -=++.|+.. .+-|- ..+-|...-++++++|+
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~a---IA~elGI~~---v~A~~--------~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTAAT---IAKEAGVDR---FVAEC--------KPEDKINVIREEQAKGH 504 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHH---HHHHcCCce---EEcCC--------CHHHHHHHHHHHHhCCC
Confidence 46889999999999999999999999977543333 334558853 23221 12348888888888875
Q ss_pred eEEEEeCCCccccC
Q 024759 231 RIIGNMGDQWCDLL 244 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~ 244 (263)
+|+++||-.||-.
T Consensus 505 -~VaMtGDGvNDAP 517 (673)
T PRK14010 505 -IVAMTGDGTNDAP 517 (673)
T ss_pred -EEEEECCChhhHH
Confidence 8999999999965
No 166
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=95.88 E-value=0.029 Score=59.67 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC----------------CCCcch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE----------------WNDTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~~~~~ 214 (263)
.+|+-|++.+.++.|++.|++|+++||-......... ++.|+..-+..++.+++- --..-.
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA---~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~s 653 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA---RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSS 653 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH---HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECC
Confidence 4688899999999999999999999998754333333 345775322223322110 001113
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.+-|...-+.++++|+ +++++||-.+|...
T Consensus 654 Pe~K~~iV~~lq~~g~-vVam~GDGvNDapA 683 (941)
T TIGR01517 654 PLDKQLLVLMLKDMGE-VVAVTGDGTNDAPA 683 (941)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCCchHHH
Confidence 3458888888998888 89999999999863
No 167
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.75 E-value=0.011 Score=48.84 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=62.6
Q ss_pred cEEEEecCCccccCchhhhhc-CC----CcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHH
Q 024759 111 DIWILDVDDSLITHVDFYAQN-GF----GTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNF 185 (263)
Q Consensus 111 ~avVfDIDeTll~n~~y~~~~-~~----g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~ 185 (263)
+.+|||+||||++........ .+ ....+ ....-|++.+|++.+ ++.++|++.|..++...+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~------------~v~~RP~l~~FL~~l-~~~~ev~i~T~~~~~ya~~ 67 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGY------------YVKLRPGLDEFLEEL-SKHYEVVIWTSASEEYAEP 67 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEE------------EEEE-TTHHHHHHHH-HHHCEEEEE-SS-HHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccce------------eEeeCchHHHHHHHH-HHhceEEEEEeehhhhhhH
Confidence 368999999999864321100 00 00000 123568999999999 4459999999999888888
Q ss_pred HHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC--CeEEEEeCCCccccCC
Q 024759 186 TESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG--YRIIGNMGDQWCDLLG 245 (263)
Q Consensus 186 T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G--y~Iv~~iGDq~sDl~G 245 (263)
..+.|...+-. ..+.+.|.... ...... .| .|..-| ..-+..|+|...-+..
T Consensus 68 v~~~ldp~~~~-~~~~~~r~~~~-~~~~~~-~K-----dL~~l~~~~~~vvivDD~~~~~~~ 121 (159)
T PF03031_consen 68 VLDALDPNGKL-FSRRLYRDDCT-FDKGSY-IK-----DLSKLGRDLDNVVIVDDSPRKWAL 121 (159)
T ss_dssp HHHHHTTTTSS-EEEEEEGGGSE-EETTEE-E-------GGGSSS-GGGEEEEES-GGGGTT
T ss_pred HHHhhhhhccc-ccccccccccc-cccccc-cc-----chHHHhhccccEEEEeCCHHHeec
Confidence 88888754322 25556665331 010001 12 333333 3457788998875544
No 168
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=95.72 E-value=0.0094 Score=53.62 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=38.0
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
+..++.|+|||++.. ...++....++++...+.++..+++|||+ .+...+-
T Consensus 2 ~~ll~sDlD~Tl~~~--------------------------~~~~~~~l~~~l~~~~~~~~~~v~~TGRs---~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDG--------------------------DDEALARLEELLEQQARPEILFVYVTGRS---LESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHC--------------------------HHHHHHHHHHHHHHHHCCGEEEEEE-SS----HHHHHHH
T ss_pred CEEEEEECCCCCcCC--------------------------CHHHHHHHHHHHHHhhCCCceEEEECCCC---HHHHHHH
Confidence 457899999999921 01122333444444557789999999999 4445566
Q ss_pred HHHcCCCCcceee
Q 024759 190 LKNVGYHSWEKLI 202 (263)
Q Consensus 190 L~~~G~~~~~~Li 202 (263)
|++.+++..+-+|
T Consensus 53 ~~~~~l~~Pd~~I 65 (247)
T PF05116_consen 53 LREYNLPQPDYII 65 (247)
T ss_dssp HHHCT-EE-SEEE
T ss_pred HHhCCCCCCCEEE
Confidence 7777777544333
No 169
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=95.71 E-value=0.051 Score=55.95 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.+|+-|++.+.++.|++.|++++++||-... ....--++.|+.. .+-+-. .+-|.+.-++++++|+
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~---ta~~iA~~lGI~~---v~a~~~--------PedK~~~v~~lq~~g~ 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDNRL---TAAAIAAEAGVDD---FIAEAT--------PEDKIALIRQEQAEGK 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHcCCCE---EEcCCC--------HHHHHHHHHHHHHcCC
Confidence 4588899999999999999999999997643 3445556678853 232211 1337788788887766
Q ss_pred eEEEEeCCCccccCC
Q 024759 231 RIIGNMGDQWCDLLG 245 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G 245 (263)
+++++||-.+|...
T Consensus 510 -~VamvGDG~NDapA 523 (675)
T TIGR01497 510 -LVAMTGDGTNDAPA 523 (675)
T ss_pred -eEEEECCCcchHHH
Confidence 89999999999864
No 170
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=95.50 E-value=0.026 Score=49.44 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=47.9
Q ss_pred hcccCCCCcEEEEecCCccccC-chhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 103 VKLAGDGKDIWILDVDDSLITH-VDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 103 ~~~~~~g~~avVfDIDeTll~n-~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
+.+...|++.+|+||||||++. ++.. .+..-.-|++-+|++.+.+ .++|++-|...+.
T Consensus 14 ~~~~~~~kklLVLDLDeTLvh~~~~~~--------------------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ 72 (195)
T TIGR02245 14 LNPPREGKKLLVLDIDYTLFDHRSPAE--------------------TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMK 72 (195)
T ss_pred cCCCCCCCcEEEEeCCCceEcccccCC--------------------CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHH
Confidence 3445578899999999999964 2111 0112355899999999988 7999999998876
Q ss_pred cHHHHHHHH
Q 024759 182 SRNFTESNL 190 (263)
Q Consensus 182 ~r~~T~~nL 190 (263)
..+.-.+.|
T Consensus 73 ya~~~l~~l 81 (195)
T TIGR02245 73 WIEIKMTEL 81 (195)
T ss_pred HHHHHHHHh
Confidence 655544444
No 171
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.018 Score=49.44 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=47.0
Q ss_pred hHHHHHHHHcCCCCC------CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCC
Q 024759 140 VTALINYLAQGISPA------LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETG 207 (263)
Q Consensus 140 ~~~~~~wv~~~~~pa------ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~ 207 (263)
.+.+++|++..++.. -..+...+..+ +...+++++|.|.......|-.||.....|. ++|.+-+..
T Consensus 53 ~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~-~e~~~L~~itar~~dl~~iT~~~l~~q~ih~-~~l~i~g~h 124 (194)
T COG5663 53 TEEFWKWMEQTEAWLYKEALLAQLVKQVLPSL-KEEHRLIYITARKADLTRITYAWLFIQNIHY-DHLEIVGLH 124 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhhceeeeeehhhHHHHHHHHHHHHHhccch-hhhhhhccc
Confidence 357888987643322 12333334444 3458899999999999999999999999995 888776553
No 172
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=95.42 E-value=0.085 Score=56.57 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc------------------------eeeeecC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE------------------------KLILRET 206 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~------------------------~Lilr~~ 206 (263)
.+|+-|++.+.+++++++|++|+++|||..... ..-.++.|+-.-+ .+++.+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta---~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITA---KAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCHHHH---HHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 568899999999999999999999999995433 3333444552100 1233322
Q ss_pred CCCC-------------------CcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 207 GEWN-------------------DTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 207 ~~~~-------------------~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.- . .+....-|...-+.+++.|+ +++++||-.+|...
T Consensus 643 ~l-~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~pa 698 (997)
T TIGR01106 643 DL-KDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPA 698 (997)
T ss_pred Hh-hhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHH
Confidence 10 0 01123457777788888998 89999999999763
No 173
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=95.36 E-value=0.077 Score=56.10 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC----------------CCCcch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE----------------WNDTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~~~~~ 214 (263)
.+|+-|++.+.++.+++.|++|+++||-.+.. ...-=++.|+.. ++ ++.+.+- .-..-.
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t---A~aIA~~lGI~~-~~-v~~g~~l~~~~~~el~~~~~~~~vfAr~~ 587 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIV---TARICQEVGIDA-ND-FLLGADIEELSDEELARELRKYHIFARLT 587 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCC-CC-eeecHhhhhCCHHHHHHHhhhCeEEEECC
Confidence 56889999999999999999999999966433 233344568752 11 1111110 000012
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.+-|...-+.++++|+ +|+++||-.+|...
T Consensus 588 Pe~K~~iV~~lq~~G~-vVam~GDGvNDapA 617 (867)
T TIGR01524 588 PMQKSRIIGLLKKAGH-TVGFLGDGINDAPA 617 (867)
T ss_pred HHHHHHHHHHHHhCCC-EEEEECCCcccHHH
Confidence 2458888888988887 89999999999764
No 174
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.25 E-value=0.027 Score=50.50 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=39.1
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
+..|..|||+||+.++ | . ..| +...+.+|++.|+.|+++|..+-.....-.+.
T Consensus 7 ~~lIFtDlD~TLl~~~--y-----e----------------~~p----A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~ 59 (274)
T COG3769 7 PLLIFTDLDGTLLPHS--Y-----E----------------WQP----AAPVLLELKDAGVPVILCSSKTRAEMLYLQKS 59 (274)
T ss_pred ceEEEEcccCcccCCC--C-----C----------------CCc----cchHHHHHHHcCCeEEEeccchHHHHHHHHHh
Confidence 4578889999999841 1 1 112 34577899999999999999885444444444
Q ss_pred HHHcC
Q 024759 190 LKNVG 194 (263)
Q Consensus 190 L~~~G 194 (263)
|.-.|
T Consensus 60 l~v~~ 64 (274)
T COG3769 60 LGVQG 64 (274)
T ss_pred cCCCC
Confidence 43333
No 175
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=95.12 E-value=0.12 Score=53.37 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.+|+-|++.+.+++|++.|++++.+||=.+. ....-=++.|+.. .+-|- ..+-|.+.-++++++|+
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~---TA~aIA~elGId~---v~A~~--------~PedK~~iV~~lQ~~G~ 508 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDNPL---TAAAIAAEAGVDD---FLAEA--------TPEDKLALIRQEQAEGR 508 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCCHH---HHHHHHHHcCCcE---EEccC--------CHHHHHHHHHHHHHcCC
Confidence 4577899999999999999999999996533 2333444668853 23221 12348888888888875
Q ss_pred eEEEEeCCCccccC
Q 024759 231 RIIGNMGDQWCDLL 244 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~ 244 (263)
+|+++||-.||-.
T Consensus 509 -~VaMtGDGvNDAP 521 (679)
T PRK01122 509 -LVAMTGDGTNDAP 521 (679)
T ss_pred -eEEEECCCcchHH
Confidence 8999999999965
No 176
>PRK10671 copA copper exporting ATPase; Provisional
Probab=95.07 E-value=0.14 Score=53.83 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.++..|++.+.++.|++.|++++++||.++ ..+..-+++.|++. .+-. . . | .-|.+.-++++.+|.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~---~~a~~ia~~lgi~~---~~~~-~----~-p--~~K~~~i~~l~~~~~ 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNP---TTANAIAKEAGIDE---VIAG-V----L-P--DGKAEAIKRLQSQGR 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHcCCCE---EEeC-C----C-H--HHHHHHHHHHhhcCC
Confidence 457789999999999999999999999774 45556777888863 2221 1 0 1 237677777776665
Q ss_pred eEEEEeCCCccccCC
Q 024759 231 RIIGNMGDQWCDLLG 245 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~G 245 (263)
.++++||..+|...
T Consensus 714 -~v~~vGDg~nD~~a 727 (834)
T PRK10671 714 -QVAMVGDGINDAPA 727 (834)
T ss_pred -EEEEEeCCHHHHHH
Confidence 68899999999875
No 177
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.04 E-value=0.094 Score=43.58 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=67.9
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHc-C-CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQ-G-ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~-~-~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
+|+||.|+|+-++-.-.. + ..||.--+=+.-+.. | .....|.+.++++.++..|+-+-..|=..+ ....+-
T Consensus 2 ~i~~d~d~t~wdhh~iSs---l-~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~---~kA~~a 74 (164)
T COG4996 2 AIVFDADKTLWDHHNISS---L-EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE---DKAIKA 74 (164)
T ss_pred cEEEeCCCcccccccchh---c-CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch---HHHHHH
Confidence 799999999987511000 0 012211000111111 1 235779999999999999998888877664 345688
Q ss_pred HHHcCCCCcceeeeecCCCCCCcc----hhhhhHHHHHHHHhcCCeEEEEeCCCc
Q 024759 190 LKNVGYHSWEKLILRETGEWNDTT----QRAHKSAERRKLVESGYRIIGNMGDQW 240 (263)
Q Consensus 190 L~~~G~~~~~~Lilr~~~~~~~~~----~~~yKs~~R~~l~~~Gy~Iv~~iGDq~ 240 (263)
|+..|...+.+.+.-.+-.++... -...|.+++++|... -+.+++|+-
T Consensus 75 Lral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~---~Ivy~DDR~ 126 (164)
T COG4996 75 LRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPS---EIVYLDDRR 126 (164)
T ss_pred HHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcc---eEEEEeccc
Confidence 888888876665554332212211 123344444444422 366888874
No 178
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=94.99 E-value=0.086 Score=50.09 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNV 193 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~ 193 (263)
.+.|++.+++++|+++|.+++++||.+.. .|..-|+..
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~~~---yt~~im~~l 221 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSDYD---YTDKGMKYL 221 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHh
Confidence 34789999999999999999999999844 444555543
No 179
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=94.98 E-value=0.027 Score=49.86 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred EEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCC-EEEEEcCCCcc
Q 024759 114 ILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGF-KIVLLTGRMEP 181 (263)
Q Consensus 114 VfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~-~I~~iTgR~e~ 181 (263)
+||.||||..-.+- ...+.+.++++++++.|.+..- .|++||||+..
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~ 48 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRSLD 48 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-HH
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHH
Confidence 58999999975221 0145777999999999998864 79999999943
No 180
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=94.81 E-value=0.2 Score=42.98 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=42.3
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHH-HHHH-cC-CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALI-NYLA-QG-ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~-~wv~-~~-~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T 186 (263)
++.||||+|.||-...-|. + ...||....=+ .-+. .| .-.-.|++.+.++.|+++|+++.+.|.-++. +..
T Consensus 3 PklvvFDLD~TlW~~~~~~--~--~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~A 76 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDT--H--VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DWA 76 (169)
T ss_dssp -SEEEE-STTTSSSS-TTT--S--S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HHH
T ss_pred CcEEEEcCcCCCCchhHhh--c--cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HHH
Confidence 6799999999998642222 1 11222111000 0000 11 2357789999999999999999999965443 455
Q ss_pred HHHHHHcCCC
Q 024759 187 ESNLKNVGYH 196 (263)
Q Consensus 187 ~~nL~~~G~~ 196 (263)
.+-|+..+++
T Consensus 77 ~~~L~~l~i~ 86 (169)
T PF12689_consen 77 RELLKLLEID 86 (169)
T ss_dssp HHHHHHTT-C
T ss_pred HHHHHhcCCC
Confidence 6778887777
No 181
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=94.79 E-value=0.13 Score=55.52 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCc----------ceeeeecCCCCC----------
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSW----------EKLILRETGEWN---------- 210 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~----------~~Lilr~~~~~~---------- 210 (263)
.+|+-|++.+.++.+++.|++|++|||....... .--++.|+..- +.+++.+..- .
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~---~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l-~~l~~~~l~~~ 719 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETAK---AIAQEVGIIPPNFIHDRDEIMDSMVMTGSQF-DALSDEEVDDL 719 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHH---HHHHHcCCCCccccccccccccceeeehHHh-hhcCHHHHHHH
Confidence 4688999999999999999999999998854333 33445576421 1123322210 0
Q ss_pred -------CcchhhhhHHHHHHHHhcCCeEEEEeCCCccccC
Q 024759 211 -------DTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLL 244 (263)
Q Consensus 211 -------~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~ 244 (263)
..-...-|...-+.++++|+ +++++||-.+|..
T Consensus 720 ~~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDap 759 (1053)
T TIGR01523 720 KALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSP 759 (1053)
T ss_pred hhcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHH
Confidence 11123458788888888887 7889999999975
No 182
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=94.79 E-value=0.15 Score=54.25 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC----------------CCCcch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE----------------WNDTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~~~~~ 214 (263)
.+|+-|++.+.++.|++.|++|++|||=.+.. ...--++.|+.. ++ ++.+.+- .-..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t---A~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~s 622 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELV---AAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARLT 622 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEcC
Confidence 46888999999999999999999999966433 333344567752 11 1111110 000112
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.+-|...-+.++++|+ +|+++||-.||-..
T Consensus 623 Pe~K~~IV~~Lq~~G~-vVam~GDGvNDaPA 652 (902)
T PRK10517 623 PMHKERIVTLLKREGH-VVGFMGDGINDAPA 652 (902)
T ss_pred HHHHHHHHHHHHHCCC-EEEEECCCcchHHH
Confidence 3458888888988887 89999999999753
No 183
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=94.71 E-value=0.16 Score=54.05 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcce----eeeecCCC----------------CC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEK----LILRETGE----------------WN 210 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~----Lilr~~~~----------------~~ 210 (263)
.+|+-|++.+.++.+++.|++++++||.... .+..-.++.|+..-+. ..+.+..- --
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~---tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDNKE---TAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCCHH---HHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 5688999999999999999999999998743 3445555667642111 11111000 00
Q ss_pred CcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 211 DTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 211 ~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.+....-|...-+.+++.|+ +++++||-.+|...
T Consensus 612 ar~~P~~K~~iV~~lq~~g~-~va~iGDG~ND~~a 645 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQGE-IVAMTGDGVNDAPA 645 (917)
T ss_pred EecCHHHHHHHHHHHHhcCC-eEEEecCCcchHHH
Confidence 01123347777777877776 78999999999864
No 184
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=94.53 E-value=0.18 Score=53.59 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCC----------------CCCcch
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGE----------------WNDTTQ 214 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~----------------~~~~~~ 214 (263)
.+|+-|++.+.++.+++.|++|++|||=.+.. ...-=++.|+.. +. ++.+.+- .-..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t---A~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~s 622 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIV---TAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKLT 622 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEeC
Confidence 46888999999999999999999999966433 233344557752 11 1111110 000112
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
.+-|...-+.++++|+ +|+++||-.||-..
T Consensus 623 Pe~K~~iV~~Lq~~G~-vVamtGDGvNDaPA 652 (903)
T PRK15122 623 PLQKSRVLKALQANGH-TVGFLGDGINDAPA 652 (903)
T ss_pred HHHHHHHHHHHHhCCC-EEEEECCCchhHHH
Confidence 3458888888998887 89999999999653
No 185
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.42 E-value=0.1 Score=54.75 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=44.9
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCCcccHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL-GFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~-G~~I~~iTgR~e~~r~~T 186 (263)
.++.+++||.||||..-.+... . ...+.+.|+++++++.|.+. +-.|++||||+ ++.-
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~------~------------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~---~~~L 563 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQI------K------------EMDLGLHPELKETLKALCSDPKTTVVVLSRSG---KDIL 563 (797)
T ss_pred ccCeEEEEecCccccCCCCCcc------c------------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC---HHHH
Confidence 3467999999999995311000 0 01345678999999999876 67899999998 5555
Q ss_pred HHHHHH
Q 024759 187 ESNLKN 192 (263)
Q Consensus 187 ~~nL~~ 192 (263)
.+||..
T Consensus 564 ~~~~~~ 569 (797)
T PLN03063 564 DKNFGE 569 (797)
T ss_pred HHHhCC
Confidence 567653
No 186
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.35 Score=42.40 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH-HcCCCC-------------cceeeeecCCCCCCcchhh
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK-NVGYHS-------------WEKLILRETGEWNDTTQRA 216 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~-~~G~~~-------------~~~Lilr~~~~~~~~~~~~ 216 (263)
....-|+-.++++..+++++.+++||+-.+....+..+++- +.-+.. |.+-++-+.++ . ---
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds-~---fG~ 146 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDS-Q---FGH 146 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCcc-c---cCC
Confidence 34556788889999999999999999988776555555553 111111 12222222221 0 011
Q ss_pred hhHHHHHHHHhcCCeEEEEeCCCccccCCCC
Q 024759 217 HKSAERRKLVESGYRIIGNMGDQWCDLLGDY 247 (263)
Q Consensus 217 yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~ 247 (263)
-|+..-.++.+ .|.=+.++||.-+|+..+.
T Consensus 147 dK~~vI~~l~e-~~e~~fy~GDsvsDlsaak 176 (220)
T COG4359 147 DKSSVIHELSE-PNESIFYCGDSVSDLSAAK 176 (220)
T ss_pred CcchhHHHhhc-CCceEEEecCCcccccHhh
Confidence 26666666664 4666899999999999874
No 187
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.3 Score=51.49 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
.|+-++.+=+||++.--... .++.-|++...++.|++.|++++++||-.......+.
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l-----------------------~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA 757 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFAL-----------------------EDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA 757 (951)
T ss_pred cCceEEEEEECCEEEEEEEe-----------------------ccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH
Confidence 46678889999998753111 4567799999999999999999999997644333333
Q ss_pred HHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 188 SNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 188 ~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
++.|+.. ++- +- .| .-|++.-++|+++| ..++++||-.||=.+
T Consensus 758 ---~~VGi~~---V~a--ev----~P--~~K~~~Ik~lq~~~-~~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 758 ---QQVGIDN---VYA--EV----LP--EQKAEKIKEIQKNG-GPVAMVGDGINDAPA 800 (951)
T ss_pred ---HhhCcce---EEe--cc----Cc--hhhHHHHHHHHhcC-CcEEEEeCCCCccHH
Confidence 3457542 222 11 11 23888899999887 589999999998653
No 188
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.95 E-value=0.16 Score=54.21 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=45.9
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCCcccHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL-GFKIVLLTGRMEPSRNFT 186 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~-G~~I~~iTgR~e~~r~~T 186 (263)
.++.+++||.||||....+.-.... .-+....+.+.|+++++++.|.+. +-.|++||||+ ++.-
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~------------~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~---~~~L 653 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRG------------DQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD---RSVL 653 (934)
T ss_pred ccceEEEEecCceeccCCCCccccc------------ccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC---HHHH
Confidence 3567999999999997422110000 001111345668999999999876 67899999999 5455
Q ss_pred HHHHHH
Q 024759 187 ESNLKN 192 (263)
Q Consensus 187 ~~nL~~ 192 (263)
.+||..
T Consensus 654 e~~fg~ 659 (934)
T PLN03064 654 DENFGE 659 (934)
T ss_pred HHHhCC
Confidence 566654
No 189
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=93.81 E-value=0.15 Score=48.10 Aligned_cols=66 Identities=27% Similarity=0.308 Sum_probs=45.2
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC----CCEEEEEcCCC---cc
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL----GFKIVLLTGRM---EP 181 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~----G~~I~~iTgR~---e~ 181 (263)
.+-+++|||||.|+.- ..++|++.+.++.|.+. .+..+|+||-. |.
T Consensus 34 ~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~ 86 (389)
T KOG1618|consen 34 PTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILES 86 (389)
T ss_pred CceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchh
Confidence 3448999999988753 36789999999999888 78899999874 44
Q ss_pred cHHHHHHHHHHcCCCC-cceeee
Q 024759 182 SRNFTESNLKNVGYHS-WEKLIL 203 (263)
Q Consensus 182 ~r~~T~~nL~~~G~~~-~~~Lil 203 (263)
.|+.-.. +..|+.. -+++|+
T Consensus 87 ~rA~~lS--~~Lgv~Vs~dqviq 107 (389)
T KOG1618|consen 87 SRAQELS--ALLGVEVSADQVIQ 107 (389)
T ss_pred hHHHHHH--HhhCCccCHHHHHh
Confidence 4443332 3445543 134444
No 190
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=92.62 E-value=0.49 Score=46.57 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGY 230 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy 230 (263)
.++.-|++.+.++.|++.|++++++||..+.......+.| |+. -+ -....|...-++++++|+
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l---gi~------~~--------~~p~~K~~~v~~l~~~g~ 407 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL---GIF------AR--------VTPEEKAALVEALQKKGR 407 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---Cce------ec--------cCHHHHHHHHHHHHHCCC
Confidence 3578899999999999999999999998865554444444 541 00 123458777778888875
Q ss_pred eEEEEeCCCccccC
Q 024759 231 RIIGNMGDQWCDLL 244 (263)
Q Consensus 231 ~Iv~~iGDq~sDl~ 244 (263)
.++++||-.+|..
T Consensus 408 -~v~~vGDg~nD~~ 420 (499)
T TIGR01494 408 -VVAMTGDGVNDAP 420 (499)
T ss_pred -EEEEECCChhhHH
Confidence 6899999999985
No 191
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=92.59 E-value=0.85 Score=40.13 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHHHHHHH-HHHHCCCEEEEEcCCCc-ccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhc--CCe
Q 024759 156 PESLKLYR-RLLRLGFKIVLLTGRME-PSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVES--GYR 231 (263)
Q Consensus 156 p~~l~l~~-~l~~~G~~I~~iTgR~e-~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~--Gy~ 231 (263)
..++++.+ ..++..--.+++|||+| ...+.-.+-|...|+. ++.++||+.+. ...++..||......+... .-.
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~-Fd~v~LKp~~~-~~~sTm~fK~~~l~~ll~~Y~~~~ 134 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLE-FDAVCLKPENQ-RFSSTMDFKQAFLEDLLHTYKNAE 134 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC-ccEEEeCcccc-cCccccHHHHHHHHHHHHhcCCCC
Confidence 35677775 44455566789999998 4466666778888998 49999999844 5667899999999888862 234
Q ss_pred EEEEeCCCccccCC
Q 024759 232 IIGNMGDQWCDLLG 245 (263)
Q Consensus 232 Iv~~iGDq~sDl~G 245 (263)
-|-+..|+..=+.|
T Consensus 135 eI~IYeDR~~hvk~ 148 (197)
T PF10307_consen 135 EIRIYEDRPKHVKG 148 (197)
T ss_pred EEEEEcCCHHHHHH
Confidence 67788998865444
No 192
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=90.72 E-value=0.82 Score=49.47 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.+|+-|++.+.++.|++.|++|+.+||.....
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~T 685 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNPLT 685 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCHHH
Confidence 56888999999999999999999999987543
No 193
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=90.48 E-value=1.3 Score=47.23 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcc--eeeeecCCCCCC-----------------
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWE--KLILRETGEWND----------------- 211 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~--~Lilr~~~~~~~----------------- 211 (263)
.+|+-+++.+.++.+++.|++|..|||=..... ..-=++.|+..-. .+.+.+..- ..
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA---~aIa~~~Gi~~~~~~~~vi~G~el-~~l~~~el~~~~~~~~VfA 620 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETA---IAIAKECGIEAEAESALVIDGAEL-DALSDEELAELVEELSVFA 620 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHH---HHHHHHcCCCCCCCceeEeehHHh-hhcCHHHHHHHhhhCcEEE
Confidence 579999999999999999999999999653322 2222344665422 235444320 00
Q ss_pred cchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 212 TTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 212 ~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
+-...-|...-+.+++.|+ ++++.||=-||...
T Consensus 621 RvsP~qK~~IV~~lq~~g~-vVamtGDGvNDapA 653 (917)
T COG0474 621 RVSPEQKARIVEALQKSGH-VVAMTGDGVNDAPA 653 (917)
T ss_pred EcCHHHHHHHHHHHHhCCC-EEEEeCCCchhHHH
Confidence 1123458888889999987 99999999999864
No 194
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=88.54 E-value=2.3 Score=44.88 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcce----eeeecCCCCCC---------------
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEK----LILRETGEWND--------------- 211 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~----Lilr~~~~~~~--------------- 211 (263)
-+||-|++.+.++.+++.|+.|+.|||-......+- -++.|+...++ ..|.+... ..
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI---~r~iGi~~~~ed~~~~~~TG~ef-D~ls~~~~~~~~~~~~v 657 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAI---AREIGIFSEDEDVSSMALTGSEF-DDLSDEELDDAVRRVLV 657 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHH---HHHhCCCcCCccccccccchhhh-hcCCHHHHHHHhhcceE
Confidence 479999999999999999999999999875444333 34457665333 22322210 00
Q ss_pred --cchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 212 --TTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 212 --~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
+-...-|...-+.|++.| .|+++-||--+|=..
T Consensus 658 FaR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApA 692 (972)
T KOG0202|consen 658 FARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPA 692 (972)
T ss_pred EEecCchhHHHHHHHHHhcC-CEEEecCCCccchhh
Confidence 012345888888888776 499999999998653
No 195
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=88.45 E-value=1.4 Score=40.49 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=92.0
Q ss_pred HHHHhhhcc---ccchhhHHHHHHHHHHHHHhhc----cc-CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHH
Q 024759 74 HYVADYMLS---DQFLQDSKVVTEEAFKYAKTVK----LA-GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALIN 145 (263)
Q Consensus 74 ~~v~~Y~~~---~qY~~D~~~v~~~A~~ya~~~~----~~-~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~ 145 (263)
+|++.|-.+ +....|+..+++....-+.=+. .. .+..--|.||=|.+|.+... ...|... .-+.|.+
T Consensus 77 ~Yl~af~v~LFLSan~~DV~~Ai~~G~~Aa~v~~~~~~~~~~~~qlRIAFDgDaVLfsDes---E~vy~~~--GL~~F~~ 151 (264)
T PF06189_consen 77 PYLKAFNVDLFLSANEDDVQEAIDAGIPAATVLPSPPDDDESDDQLRIAFDGDAVLFSDES---ERVYQEQ--GLEAFHE 151 (264)
T ss_pred HHHHHhCCceEeeCCHHHHHHHHHcCCCcEEeecCCCCCCCCCCceEEEEcCCeEeecCcc---hHhHHhc--cHHHHHH
Confidence 455555332 3445677766655544332111 11 13445899999999987421 1111110 1233444
Q ss_pred HHHcCC-CC----CCHHHHHHHHHHHHC------CCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcch
Q 024759 146 YLAQGI-SP----ALPESLKLYRRLLRL------GFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQ 214 (263)
Q Consensus 146 wv~~~~-~p----aip~~l~l~~~l~~~------G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~ 214 (263)
-..... .| |+..-+.-+.+++++ =+.+.+||.|+..-.+-.++.|+.-|+..-+.++|-+.+
T Consensus 152 ~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~------- 224 (264)
T PF06189_consen 152 HEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLP------- 224 (264)
T ss_pred HHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCc-------
Confidence 333322 12 344455555666655 268999999987655777899999999975566665432
Q ss_pred hhhhHHHHHHHHhcCCeEEEEeCCCccccCCCCcc
Q 024759 215 RAHKSAERRKLVESGYRIIGNMGDQWCDLLGDYPG 249 (263)
Q Consensus 215 ~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~~~g 249 (263)
|....+.+.. -.+++||..-+.++..+
T Consensus 225 ---K~~vL~~~~p-----hIFFDDQ~~H~~~a~~~ 251 (264)
T PF06189_consen 225 ---KGPVLKAFRP-----HIFFDDQDGHLESASKV 251 (264)
T ss_pred ---hhHHHHhhCC-----CEeecCchhhhhHhhcC
Confidence 6666666654 57999999888776433
No 196
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=85.52 E-value=3.8 Score=34.20 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeE
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRI 232 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~I 232 (263)
..++.+.+-++.|.+. ++|++-||-.. ..-++-++-.|++. ++ ++-.. ...-|...-++|.++ |.-
T Consensus 30 klf~ev~e~iqeL~d~-V~i~IASgDr~---gsl~~lae~~gi~~-~r-v~a~a-------~~e~K~~ii~eLkk~-~~k 95 (152)
T COG4087 30 KLFSEVSETIQELHDM-VDIYIASGDRK---GSLVQLAEFVGIPV-ER-VFAGA-------DPEMKAKIIRELKKR-YEK 95 (152)
T ss_pred EEcHhhHHHHHHHHHh-heEEEecCCcc---hHHHHHHHHcCCce-ee-eeccc-------CHHHHHHHHHHhcCC-CcE
Confidence 4568888899999999 99999999553 23345566778875 22 33222 224577777788765 556
Q ss_pred EEEeCCCccccCC
Q 024759 233 IGNMGDQWCDLLG 245 (263)
Q Consensus 233 v~~iGDq~sDl~G 245 (263)
+.++||-.+|++.
T Consensus 96 ~vmVGnGaND~la 108 (152)
T COG4087 96 VVMVGNGANDILA 108 (152)
T ss_pred EEEecCCcchHHH
Confidence 7789999999764
No 197
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=84.32 E-value=2 Score=41.28 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHH
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRN 184 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~ 184 (263)
.|..++++++|+++|-+.|+||+-+-...+
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd 271 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVD 271 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhh
Confidence 478999999999999999999998855443
No 198
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=81.42 E-value=10 Score=34.15 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=63.5
Q ss_pred CChHHHHHHHHc----CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC-cceeeeecCC----C
Q 024759 138 FDVTALINYLAQ----GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS-WEKLILRETG----E 208 (263)
Q Consensus 138 y~~~~~~~wv~~----~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~-~~~Lilr~~~----~ 208 (263)
++...++++|.. ..-.|-+.-..++-.|+.++ -++.||-+ +....+-|++.|+.+ ++.++.-... .
T Consensus 81 ~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~---k~HA~r~Lk~LGieDcFegii~~e~~np~~~ 155 (244)
T KOG3109|consen 81 FDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY---KVHAIRILKKLGIEDCFEGIICFETLNPIEK 155 (244)
T ss_pred CCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc---HHHHHHHHHHhChHHhccceeEeeccCCCCC
Confidence 556777888775 33456677778888888876 44556655 566678999999876 4444432111 0
Q ss_pred C--CCcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCCC-CccceE
Q 024759 209 W--NDTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLGD-YPGHRT 252 (263)
Q Consensus 209 ~--~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G~-~~g~r~ 252 (263)
. -+++...|-...|..-. ..++=+.+++|+.+.+.++ ..|-++
T Consensus 156 ~~vcKP~~~afE~a~k~agi-~~p~~t~FfDDS~~NI~~ak~vGl~t 201 (244)
T KOG3109|consen 156 TVVCKPSEEAFEKAMKVAGI-DSPRNTYFFDDSERNIQTAKEVGLKT 201 (244)
T ss_pred ceeecCCHHHHHHHHHHhCC-CCcCceEEEcCchhhHHHHHhcccee
Confidence 0 01112233333332222 2255678999999888765 345333
No 199
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=81.01 E-value=6.7 Score=30.72 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=49.5
Q ss_pred EEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCC-C--Ccchh-hhhHHHHHHHHh-cCCeEEEEeCCCc-ccc
Q 024759 172 IVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEW-N--DTTQR-AHKSAERRKLVE-SGYRIIGNMGDQW-CDL 243 (263)
Q Consensus 172 I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~-~--~~~~~-~yKs~~R~~l~~-~Gy~Iv~~iGDq~-sDl 243 (263)
++|||+.+......-.+-|+.+|||. ..++||.-+.. . -+... .+|...-.++.+ -..+-...|||+= .|.
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dp 78 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDP 78 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCH
Confidence 78999999888888999999999996 77898876320 0 01222 477776666654 2344567888875 553
No 200
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.87 E-value=5.1 Score=39.80 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcce-eeeecCCCCCCcchhhhhHHHHHHHHhcCCe
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEK-LILRETGEWNDTTQRAHKSAERRKLVESGYR 231 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~-Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~ 231 (263)
-|....++|++++.+.|.+|++||..--. -+.-++-|..-|+.+..- ..|.++.-+...+..-+|.-.. ++.-.-.
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk--~EnVd~~ 175 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLK--LENVDPK 175 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHh--hcCCChh
Confidence 46677899999999999999999997533 456778899999987543 4555443222223344553322 2332344
Q ss_pred EEEEeCCCc-cccCC
Q 024759 232 IIGNMGDQW-CDLLG 245 (263)
Q Consensus 232 Iv~~iGDq~-sDl~G 245 (263)
-++.+||+| .|.+-
T Consensus 176 ~w~H~GDN~~aD~l~ 190 (635)
T COG5610 176 KWIHCGDNWVADYLK 190 (635)
T ss_pred heEEecCchhhhhcC
Confidence 589999999 67664
No 201
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=79.65 E-value=0.61 Score=41.36 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceee--eecCCCCCCcc-hhhhhHHHHHHHHhcCCe
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLI--LRETGEWNDTT-QRAHKSAERRKLVESGYR 231 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Li--lr~~~~~~~~~-~~~yKs~~R~~l~~~Gy~ 231 (263)
.++..++++.+.++|.+. ++||.+...... .+...|...+...+ .-......+|| ...|+... +++....-.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~---~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~-~~~~~~~~~ 214 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQH---GIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKAL-KECSNIPKN 214 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCC---CceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHH-HHcCCCCcc
Confidence 578888999998899986 889987544321 23333322211111 11111002333 23344322 223111112
Q ss_pred EEEEeCCCc-cccCCCC-ccceE
Q 024759 232 IIGNMGDQW-CDLLGDY-PGHRT 252 (263)
Q Consensus 232 Iv~~iGDq~-sDl~G~~-~g~r~ 252 (263)
-+.+|||+. +|+.++. .|-++
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDT 237 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeE
Confidence 378999995 9999864 35444
No 202
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.97 E-value=17 Score=36.38 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=83.5
Q ss_pred CccCCCCCcc----------cchHHHHhhhccccchhhHHHHHHHHHHHHHhhcc-cCCCCcEEEEecCCccccCchhhh
Q 024759 61 NIRDLPTVPK----------VCQHYVADYMLSDQFLQDSKVVTEEAFKYAKTVKL-AGDGKDIWILDVDDSLITHVDFYA 129 (263)
Q Consensus 61 n~~~~~~vP~----------~C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~~-~~~g~~avVfDIDeTll~n~~y~~ 129 (263)
|+..|-..+. .|.++...|..+-.|...+.-+ .+..++.-+.+ .+..+++.|+|+|+||---.- .
T Consensus 164 ~~~r~~~fD~~~l~srig~~~~~d~k~~~~a~~~~n~e~~~l--~~~ei~Sl~~A~~g~~kK~LVLDLDNTLWGGVI--G 239 (574)
T COG3882 164 AEGRWLMFDQEALASRIGIERWFDPKAYHSASVPFNVELCPL--AADEIASLLAAMSGKSKKALVLDLDNTLWGGVI--G 239 (574)
T ss_pred cccceeeccHHHHHhHhhhhhhcchHHHHhccCCcchhhhhH--hhHHHHHHHHHhhCcccceEEEecCCccccccc--c
Confidence 3455656663 3444455555555553222222 22223322222 356678999999999874311 1
Q ss_pred hcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCC
Q 024759 130 QNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEW 209 (263)
Q Consensus 130 ~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~ 209 (263)
..+..+-..+ ..++.++...-.+++..++++|+-..+.|-..+... .+-.++| .+++|+.++..
T Consensus 240 edGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da---~evF~kh-----p~MiLkeedfa 303 (574)
T COG3882 240 EDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDA---KEVFRKH-----PDMILKEEDFA 303 (574)
T ss_pred cccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhH---HHHHhhC-----CCeEeeHhhhh
Confidence 1111110010 123456777788899999999998888887765432 2223332 45677765520
Q ss_pred CCcchhhhhHHHHHHHHh---cCCeEEEEeCCCc
Q 024759 210 NDTTQRAHKSAERRKLVE---SGYRIIGNMGDQW 240 (263)
Q Consensus 210 ~~~~~~~yKs~~R~~l~~---~Gy~Iv~~iGDq~ 240 (263)
...-.-.-|.+--++|.+ -|-.=..+++|++
T Consensus 304 ~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p 337 (574)
T COG3882 304 VFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNP 337 (574)
T ss_pred hheecCCcchhhHHHHHHHhCCCccceEEecCCH
Confidence 000001114444444444 3666677888887
No 203
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=72.34 E-value=12 Score=34.92 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGY 195 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~ 195 (263)
..|...+++++|+++|++++++..-.-......-+-+++.||
T Consensus 64 ~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 64 RFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 345667999999999999987654321111223344455555
No 204
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=70.97 E-value=22 Score=26.50 Aligned_cols=63 Identities=25% Similarity=0.259 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeC
Q 024759 158 SLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMG 237 (263)
Q Consensus 158 ~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iG 237 (263)
.+++.+.|.+.|++|+ -|. .|.+.|+++|++. ..++.+..+. .......+.......|.+.=
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~-~~~~~ki~~~---------~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-------GTAKFLREAGLPV-KTLHPKVHGG---------ILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHCCCcc-eeccCCCCCC---------CHHHHHHhcCCCeEEEEECC
Confidence 4678889999999986 443 4779999999974 2234333221 11244555555566666654
Q ss_pred C
Q 024759 238 D 238 (263)
Q Consensus 238 D 238 (263)
+
T Consensus 64 ~ 64 (90)
T smart00851 64 Y 64 (90)
T ss_pred C
Confidence 4
No 205
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=69.67 E-value=16 Score=29.70 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=44.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCcc
Q 024759 171 KIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQWC 241 (263)
Q Consensus 171 ~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~s 241 (263)
+||+++||+...++...+.|++.|+.. +++..... .+.+.. ....+.+..-+|-|+.+-.|...
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~ep---~i~~~~~~-~g~tii---e~le~~~~~~~faIvl~TpDD~~ 64 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLEP---IIWHEQPN-LGQTII---EKLEEAADSVDFAIVLFTPDDIG 64 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCce---EEeecCCC-CCCchH---HHHHHHhccCCEEEEEEcccccc
Confidence 599999999999999999999888854 44443332 332221 23344555578989998887664
No 206
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=69.08 E-value=3 Score=35.04 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCeEEEEeCCCc
Q 024759 220 AERRKLVESGYRIIGNMGDQW 240 (263)
Q Consensus 220 ~~R~~l~~~Gy~Iv~~iGDq~ 240 (263)
+..+.|.+.|+++.+.-||+.
T Consensus 134 ~~l~~L~~~Gi~~~i~TGD~~ 154 (215)
T PF00702_consen 134 EALQELKEAGIKVAILTGDNE 154 (215)
T ss_dssp HHHHHHHHTTEEEEEEESSEH
T ss_pred hhhhhhhccCcceeeeecccc
Confidence 455677888999999999965
No 207
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.63 E-value=14 Score=33.91 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGR 178 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR 178 (263)
.|.-.+++++|+++|++++++..-
T Consensus 73 FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 73 FPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCC
Confidence 466689999999999999988754
No 208
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=65.56 E-value=12 Score=33.49 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=11.9
Q ss_pred CcEEEEecCCccccC
Q 024759 110 KDIWILDVDDSLITH 124 (263)
Q Consensus 110 ~~avVfDIDeTll~n 124 (263)
+-.+.||+||||...
T Consensus 11 ~~l~lfdvdgtLt~~ 25 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPP 25 (252)
T ss_pred ceEEEEecCCccccc
Confidence 347889999999854
No 209
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=63.91 E-value=2.4 Score=38.51 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
.+++.++++.|+++|. +++.|+.+..
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~ 170 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPW 170 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCC
Confidence 4778888999998897 7889998753
No 210
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=61.53 E-value=7.4 Score=37.75 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=38.9
Q ss_pred CCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 107 GDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 107 ~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
..+.+.+.||.|||+++|.+--. | +-++.+|. +..|++..=++.+.+.|++++|-|+-.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~v---f---~~~~~dw~--------~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKV---F---PKGSMDWR--------ILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCCcceEEEecCCceeecCCcce---e---eccCccce--------eeccccchhhhhhccCCeEEEEEeccc
Confidence 35677999999999999843210 0 01122222 233445556788899999999999865
No 211
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=61.13 E-value=69 Score=24.91 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHh-cCCeEEE
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVE-SGYRIIG 234 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~-~Gy~Iv~ 234 (263)
+..+++.+.+.+.|++|+ -|+ .|.++|+++|++. ..+.+..+. +. ......+.+ .....+.
T Consensus 12 ~~~~~~a~~l~~~G~~i~-AT~-------gTa~~L~~~Gi~~--~~v~~~~~~--g~------~~i~~~i~~~g~idlVI 73 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLF-ATG-------GTSRVLADAGIPV--RAVSKRHED--GE------PTVDAAIAEKGKFDVVI 73 (112)
T ss_pred HHHHHHHHHHHHCCCEEE-ECc-------HHHHHHHHcCCce--EEEEecCCC--CC------cHHHHHHhCCCCEEEEE
Confidence 677889999999999885 553 6889999999984 334444321 11 123445555 5677777
Q ss_pred EeCC
Q 024759 235 NMGD 238 (263)
Q Consensus 235 ~iGD 238 (263)
|+-|
T Consensus 74 n~~~ 77 (112)
T cd00532 74 NLRD 77 (112)
T ss_pred EcCC
Confidence 7755
No 212
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=61.11 E-value=5.7 Score=36.46 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred cCCCCcEEEEecCCccccCch---hhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 106 AGDGKDIWILDVDDSLITHVD---FYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 106 ~~~g~~avVfDIDeTll~n~~---y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
...+++.+|+|+||||...+- .....+|.... ..+.....--.-+-|++-+|+..+-+. +++++-|+-.+..
T Consensus 85 ~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v----~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y 159 (262)
T KOG1605|consen 85 ATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPV----EIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY 159 (262)
T ss_pred ccCCCceEEEeCCCcccccccccCCCCCcceeeee----eeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH
Confidence 357899999999999886541 10011111100 000000000012345666666655444 5666666666666
Q ss_pred HHHHHHHHHH
Q 024759 183 RNFTESNLKN 192 (263)
Q Consensus 183 r~~T~~nL~~ 192 (263)
...-.+.|..
T Consensus 160 a~~v~D~LD~ 169 (262)
T KOG1605|consen 160 ADPLLDILDP 169 (262)
T ss_pred HHHHHHHccC
Confidence 6666666664
No 213
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=60.76 E-value=5.6 Score=39.75 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHCCCEEEEEcCCCcccHHHHHHHHHH-cCCCC
Q 024759 161 LYRRLLRLGFKIVLLTGRMEPSRNFTESNLKN-VGYHS 197 (263)
Q Consensus 161 l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~-~G~~~ 197 (263)
.++...+.| +++++|.-+ |-.-+-++++ .|+..
T Consensus 101 ~~~~~~~~g-~~vVVTAsP---rvmVEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMP---RVMVERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCH---HHHHHHHHHHhcCCce
Confidence 445667778 999999988 5566678888 77763
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=59.82 E-value=43 Score=34.05 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH-HHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeE
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL-KNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRI 232 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL-~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~I 232 (263)
.-||..+=+.+|++-|++-+.+||-.+ .|.+.. +++|.+. ++-. .+| +-|-+.-++-+++| |+
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~----~TAa~IA~EAGVDd----fiAe-----atP--EdK~~~I~~eQ~~g-rl 511 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNP----LTAAAIAAEAGVDD----FIAE-----ATP--EDKLALIRQEQAEG-RL 511 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCH----HHHHHHHHHhCchh----hhhc-----CCh--HHHHHHHHHHHhcC-cE
Confidence 347888999999999999999999664 333443 3678865 2221 112 22555445555555 59
Q ss_pred EEEeCCCccccCC
Q 024759 233 IGNMGDQWCDLLG 245 (263)
Q Consensus 233 v~~iGDq~sDl~G 245 (263)
+++.||--+|=..
T Consensus 512 VAMtGDGTNDAPA 524 (681)
T COG2216 512 VAMTGDGTNDAPA 524 (681)
T ss_pred EEEcCCCCCcchh
Confidence 9999999998653
No 215
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=59.67 E-value=29 Score=34.08 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCC
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGD 238 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGD 238 (263)
-.|++.|+++|+++-|.+..++. -.|.+.|...|++||+-++....-.+. .......+..+.|-+|+...+-
T Consensus 15 S~Ff~~L~~rg~~l~~~~~~d~~------l~L~~~ge~~YD~LIif~~~~k~~g~~--ls~~~ll~Fvd~GgNilv~~s~ 86 (423)
T PF03345_consen 15 STFFNSLKERGYELTFKSADDES------LSLFKYGERLYDHLIIFPPSVKEFGGS--LSPKTLLDFVDNGGNILVAGSS 86 (423)
T ss_pred HHHHHHHHhCCCEEEEecCCCCC------cchhhCChhhcceEEEeCCcccccCCC--CCHHHHHHHHhCCCcEEEEeCC
Confidence 46889999999999999988733 457889999999999987643011111 2234445566677788777666
Q ss_pred C-ccc
Q 024759 239 Q-WCD 242 (263)
Q Consensus 239 q-~sD 242 (263)
+ .+|
T Consensus 87 ~~~~~ 91 (423)
T PF03345_consen 87 DAIPD 91 (423)
T ss_pred CcCcH
Confidence 6 444
No 216
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=59.25 E-value=67 Score=24.66 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
+..+.+.+.|.+.|++++- |. .|.+.|+++|++.
T Consensus 13 ~~~~~~~~~l~~~G~~l~a-T~-------gT~~~l~~~gi~~ 46 (110)
T cd01424 13 PEAVEIAKRLAELGFKLVA-TE-------GTAKYLQEAGIPV 46 (110)
T ss_pred hHHHHHHHHHHHCCCEEEE-ch-------HHHHHHHHcCCeE
Confidence 5677888899999999863 33 5788999999873
No 217
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=56.46 E-value=27 Score=29.90 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCC
Q 024759 90 KVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLG 169 (263)
Q Consensus 90 ~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G 169 (263)
.....||..+.+.++..+...+.+++||+.+ ... .+ -+.+ .....+.+|++.+++.|
T Consensus 67 ~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~--~~~-------~~---~~~~-----------~~~~~~~~f~~~~~~~G 123 (196)
T cd06416 67 GSAAGQVQTFLQYLKANGIKYGTVWIDIEQN--PCQ-------WS---SDVA-----------SNCQFLQELVSAAKALG 123 (196)
T ss_pred CCHHHHHHHHHHHHHhCCCceeEEEEEEecC--CCC-------Cc---CCHH-----------HHHHHHHHHHHHHHHhC
Confidence 4567899888888765444455677999986 110 00 0011 11134567888888889
Q ss_pred CEEEEEcCCCc
Q 024759 170 FKIVLLTGRME 180 (263)
Q Consensus 170 ~~I~~iTgR~e 180 (263)
.++.+-|++..
T Consensus 124 ~~~~iYt~~~~ 134 (196)
T cd06416 124 LKVGIYSSQYD 134 (196)
T ss_pred CeEEEEcCcch
Confidence 99999999764
No 218
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=56.40 E-value=48 Score=35.50 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=49.1
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCccc-----
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPS----- 182 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~----- 182 (263)
+-++...||+|.--.. -+...-.|- ..--+||-+.+-+...+.++.|++|+.+||+....
T Consensus 560 ~~p~~~~f~~d~~n~p---~~nl~FlGl------------~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA 624 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNFP---TDNLRFLGL------------ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA 624 (1019)
T ss_pred cCCCceEeecCCCCCc---chhccccch------------hhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhh
Confidence 4466889999874332 221111111 11135666677777789999999999999996421
Q ss_pred ---------HHHHHHHHHHcCCCCcceeeee
Q 024759 183 ---------RNFTESNLKNVGYHSWEKLILR 204 (263)
Q Consensus 183 ---------r~~T~~nL~~~G~~~~~~Lilr 204 (263)
-+.++.++++.+.+. +...+|
T Consensus 625 ~~vgIi~~~~et~e~~a~r~~~~v-~~vn~~ 654 (1019)
T KOG0203|consen 625 KSVGIISEGSETVEDIAKRLNIPV-EQVNSR 654 (1019)
T ss_pred hheeeecCCchhhhhhHHhcCCcc-cccCcc
Confidence 234455666666664 444444
No 219
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=54.50 E-value=36 Score=33.49 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCcEEEEecCCccccCchhhhhc----CCCcccCCh----HHHHH-----HHHcCCCCCCHHHHHHHHH----HHHCCC
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQN----GFGTEIFDV----TALIN-----YLAQGISPALPESLKLYRR----LLRLGF 170 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~----~~g~~~y~~----~~~~~-----wv~~~~~paip~~l~l~~~----l~~~G~ 170 (263)
..+..|++|||.|+..+...+..- .+|...|-| ..+.. +...|+...-.++.++++. +++..-
T Consensus 137 ~~~~~i~LDiD~T~~~~~G~Qe~~~~n~y~g~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~ 216 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHGEQEGAVFNTYYGEDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWP 216 (448)
T ss_pred cccceEEEecccccccchhhcccccccccCCCcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCc
Confidence 456899999999998765443221 233333433 11222 2334666666666666644 444332
Q ss_pred E-EEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 171 K-IVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 171 ~-I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
. -+++=+=+.-.+....+++++.|..+
T Consensus 217 ~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 217 DTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred cceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 2 24454445556777888888888864
No 220
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=54.23 E-value=37 Score=29.20 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.3
Q ss_pred CCcEEEEecCCcccc
Q 024759 109 GKDIWILDVDDSLIT 123 (263)
Q Consensus 109 g~~avVfDIDeTll~ 123 (263)
+.+|+|||=|+|+.-
T Consensus 42 ~ikavVlDKDNcit~ 56 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA 56 (190)
T ss_pred CceEEEEcCCCeeeC
Confidence 678999999999873
No 221
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=54.22 E-value=19 Score=27.79 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
+.++++++.++++|.+++.||++.+.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 67899999999999999999998764
No 222
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=53.77 E-value=40 Score=36.89 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=25.9
Q ss_pred CEEEEEcCCCcccHHHHHHHHHHcCCC--Ccceeeee
Q 024759 170 FKIVLLTGRMEPSRNFTESNLKNVGYH--SWEKLILR 204 (263)
Q Consensus 170 ~~I~~iTgR~e~~r~~T~~nL~~~G~~--~~~~Lilr 204 (263)
+..+|.|||+ ...+.+-|++.|+| ..+-+|..
T Consensus 805 igfv~aTGR~---l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 805 SGFILSTSMT---ISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred eEEEEEcCCC---HHHHHHHHHhCCCCCCCCCEEEeC
Confidence 7788999999 66778889999998 66666643
No 223
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.68 E-value=19 Score=27.94 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
-.+++++.++.++++|.+|+.||+.++.
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3478999999999999999999998754
No 224
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=53.59 E-value=55 Score=31.04 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCEEEEEcCC------CcccHH----HHHHHHHHcCCCC----cceeeeecCCCCCCcchhhhhHHHHHH
Q 024759 159 LKLYRRLLRLGFKIVLLTGR------MEPSRN----FTESNLKNVGYHS----WEKLILRETGEWNDTTQRAHKSAERRK 224 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR------~e~~r~----~T~~nL~~~G~~~----~~~Lilr~~~~~~~~~~~~yKs~~R~~ 224 (263)
.++++.++++|++|++..+- ++..|+ ..++.+++.||.+ |+....++..+ ...-+.+=.+.|.+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d--~~~~t~llkelr~~ 144 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPE--YYALTELVKETTKA 144 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcch--HHHHHHHHHHHHHH
Confidence 37888999999999987652 233343 4455667999987 44333221111 11122333456666
Q ss_pred HHhc--CCeEEEEeC
Q 024759 225 LVES--GYRIIGNMG 237 (263)
Q Consensus 225 l~~~--Gy~Iv~~iG 237 (263)
+.++ |+.+...+.
T Consensus 145 l~~~~~~~~Lsvav~ 159 (358)
T cd02875 145 FKKENPGYQISFDVA 159 (358)
T ss_pred HhhcCCCcEEEEEEe
Confidence 6654 676665443
No 225
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=53.24 E-value=21 Score=27.62 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
...+.++.++.++++|.+|+.||+..+..
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 34788999999999999999999987643
No 226
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.82 E-value=20 Score=27.85 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
-.+.+++.++.++++|.+|+.||+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 44889999999999999999999987654
No 227
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=49.86 E-value=9.1 Score=38.23 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=18.4
Q ss_pred CCcEEEEecCCcccc---CchhhhhcCCC
Q 024759 109 GKDIWILDVDDSLIT---HVDFYAQNGFG 134 (263)
Q Consensus 109 g~~avVfDIDeTll~---n~~y~~~~~~g 134 (263)
....++||+||||+. ..||+....++
T Consensus 21 ~~~~~~FDfDGTLt~~~s~f~~Fll~A~~ 49 (497)
T PLN02177 21 SNQTVAADLDGTLLISRSAFPYYLLVALE 49 (497)
T ss_pred cccEEEEecCCcccCCCCccHHHHHHHcc
Confidence 355899999999996 45666543333
No 228
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.83 E-value=55 Score=30.38 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGY 195 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~ 195 (263)
..|.-.+++++|+++|++++++..-.-......-+-+.+.|+
T Consensus 68 ~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 68 AFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 335557899999999999998775321122234566777777
No 229
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.74 E-value=56 Score=30.11 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..|...+++++|+++|+++++...
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEC
Confidence 345678999999999999987654
No 230
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=49.70 E-value=69 Score=34.88 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
++|+-+++.+.++.|++.|++|..+||=.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 56888999999999999999999999954
No 231
>PLN03190 aminophospholipid translocase; Provisional
Probab=49.69 E-value=57 Score=36.19 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCc
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRME 180 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e 180 (263)
.+|+-+++.+.++.|++.|++|.++||-..
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~~ 753 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDKQ 753 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCH
Confidence 458889999999999999999999999653
No 232
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=49.14 E-value=5.9 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=9.7
Q ss_pred ecCccCCCCCcccc
Q 024759 59 TKNIRDLPTVPKVC 72 (263)
Q Consensus 59 ~nn~~~~~~vP~~C 72 (263)
-||+++++|+|+.-
T Consensus 9 gnni~~fkt~p~se 22 (38)
T PF09198_consen 9 GNNIQNFKTTPSSE 22 (38)
T ss_dssp SS--SSSSSHHHHH
T ss_pred CCceeceeecCccc
Confidence 48999999999744
No 233
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.69 E-value=24 Score=29.52 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.-.+.+++.++.++++|.+|+.||+.+...
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 345889999999999999999999988654
No 234
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=48.49 E-value=89 Score=33.67 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcce--eeeecCCCCCC-----------------
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEK--LILRETGEWND----------------- 211 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~--Lilr~~~~~~~----------------- 211 (263)
++|--|++.+.++..+..|++|-.+||-.-....+ --.+-|+-..+. +.|-+... +.
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkA---IA~eCGILt~~~d~~~lEG~eF-r~~s~ee~~~i~pkl~VlA 720 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKA---IARECGILTPGGDFLALEGKEF-RELSQEERDKIWPKLRVLA 720 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHH---HHHHcccccCCCccceecchhh-hhcCHHHHHhhhhhheeee
Confidence 68999999999999999999999999976322111 112334432221 34333221 10
Q ss_pred cchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 212 TTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 212 ~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
++...-|--.-+.|++.|. ||++-||--+|=..
T Consensus 721 RSSP~DK~lLVk~L~~~g~-VVAVTGDGTNDaPA 753 (1034)
T KOG0204|consen 721 RSSPNDKHLLVKGLIKQGE-VVAVTGDGTNDAPA 753 (1034)
T ss_pred cCCCchHHHHHHHHHhcCc-EEEEecCCCCCchh
Confidence 1112235455556666665 99999999998654
No 235
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=48.13 E-value=6.6 Score=35.30 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
+...+.++.|++.|..+++.|+.+..
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~ 148 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRY 148 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 56667788888889999999998754
No 236
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.89 E-value=29 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
-.+.+++.++.++++|.+|+.||+..+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 34789999999999999999999987653
No 237
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=46.85 E-value=36 Score=29.20 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhhcccCC-CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 024759 88 DSKVVTEEAFKYAKTVKLAGD-GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLL 166 (263)
Q Consensus 88 D~~~v~~~A~~ya~~~~~~~~-g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~ 166 (263)
+...+.+||..+++.++..+- ....+++|+++.-. + +.+.. ...+..|+++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~-~--------------~~~~~-----------~~~~~~f~~~v~ 118 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSG-N--------------SKAAN-----------TSAILAFMDTIK 118 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCC-C--------------CHHHH-----------HHHHHHHHHHHH
Confidence 445677888877777664211 12357899997521 1 11111 134678899999
Q ss_pred HCCCEEEEEcCCC
Q 024759 167 RLGFKIVLLTGRM 179 (263)
Q Consensus 167 ~~G~~I~~iTgR~ 179 (263)
+.|+++.+=|++.
T Consensus 119 ~~G~~~~iYt~~~ 131 (196)
T cd06415 119 DAGYKPMLYSYKP 131 (196)
T ss_pred HhCCCcEEEecHH
Confidence 9999999999876
No 238
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.27 E-value=80 Score=29.31 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGY 195 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~ 195 (263)
..|...+++++|+++|+++++...-.-.....+-+-+++.||
T Consensus 71 ~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 71 RFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 446677999999999999997554321111123444555564
No 239
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.24 E-value=30 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
-.+++++.++.++++|.+|+.||+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34789999999999999999999865
No 240
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=44.31 E-value=77 Score=30.17 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=56.8
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHH
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTE 187 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~ 187 (263)
+++..++||=|-..-.. + |.++--|.+--..|+.+.-.|.+ |+.|-
T Consensus 172 ~~~~~~~f~pd~~~~~~-~------f~G~~~nf~el~~Wi~dKcvpLV---------------------------REiTF 217 (375)
T KOG0912|consen 172 PGKNILVFDPDHSEPNH-E------FLGSMTNFDELKQWIQDKCVPLV---------------------------REITF 217 (375)
T ss_pred CCCceEEeCCCcCCcCc-c------cccccccHHHHHHHHHhcchhhh---------------------------hhhhh
Confidence 56668999988743322 2 33332234556678877544421 44444
Q ss_pred H---HHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCC
Q 024759 188 S---NLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGD 238 (263)
Q Consensus 188 ~---nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGD 238 (263)
+ -|.+.|.|. -+++|..+| ..+...||...+++|..+.-.|.-..+|
T Consensus 218 eN~EELtEEGlPf--lILf~~kdD--~~s~k~F~~aI~ReL~~e~~~in~l~AD 267 (375)
T KOG0912|consen 218 ENAEELTEEGLPF--LILFRKKDD--KESEKIFKNAIARELDDETLAINFLTAD 267 (375)
T ss_pred ccHHHHhhcCCce--EEEEecCCc--ccHHHHHHHHHHHHhhhhhhccceeecC
Confidence 4 456779986 244465555 4568899999999998765545555554
No 241
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=44.08 E-value=46 Score=30.96 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTg 177 (263)
.|...++++.|+++|++++++..
T Consensus 63 FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 63 FPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEee
Confidence 45567999999999999986643
No 242
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=43.68 E-value=40 Score=28.77 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 024759 88 DSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLR 167 (263)
Q Consensus 88 D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~ 167 (263)
+.....+||..+.+.++..+. ...+++|++.+-..+. + -+.+ .....+.+|++.+.+
T Consensus 68 ~~~~a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~~~--------~---~~~~-----------~~~~~~~~f~~~v~~ 124 (191)
T cd06414 68 TVAEAREEAEFVLRLIKGYKL-SYPVYYDLEDETQLGA--------G---LSKD-----------QRTDIANAFCETIEA 124 (191)
T ss_pred CHHHHHHHHHHHHHHhhccCC-CCCeEEEeecCCCCCC--------C---CCHH-----------HHHHHHHHHHHHHHH
Confidence 445567889888887765422 2346789988532210 0 0111 122456788999999
Q ss_pred CCCEEEEEcCCCc
Q 024759 168 LGFKIVLLTGRME 180 (263)
Q Consensus 168 ~G~~I~~iTgR~e 180 (263)
.|.++++-|++.-
T Consensus 125 ~G~~~~iY~~~~~ 137 (191)
T cd06414 125 AGYYPGIYANLSW 137 (191)
T ss_pred cCCCeEEEecHHH
Confidence 9999999999763
No 243
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=43.52 E-value=92 Score=28.85 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
||++.+.+.|++.|.++.++|.+. +.....+-++.+|...
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGLQG 102 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhhCc
Confidence 999999999999999999999754 4555556666666553
No 244
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=43.29 E-value=41 Score=27.45 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.5
Q ss_pred HHHHHHHHCCCEEEEEcCCC
Q 024759 160 KLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR~ 179 (263)
...+-|.+.|+-||.+|.=+
T Consensus 82 sV~~pLsd~gigIFavStyd 101 (128)
T COG3603 82 SVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred hhhhhHhhCCccEEEEEecc
Confidence 55688899999999999743
No 245
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=42.81 E-value=34 Score=28.61 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
...+.+++.++.++++|.+|+.||+.+...
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 445899999999999999999999987543
No 246
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.91 E-value=35 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.-.+.++++++.++++|.+|+.||+.....
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 345889999999999999999999987653
No 247
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=41.91 E-value=80 Score=26.66 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 024759 88 DSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLR 167 (263)
Q Consensus 88 D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~ 167 (263)
+.....+||..+.+.++. .+..+++|++++... .....+..|++++.+
T Consensus 65 ~~~~a~~eA~~f~~~~~~---~~~~~~lD~E~~~~~-----------------------------~~~~~~~~f~~~v~~ 112 (177)
T cd06523 65 STADAKAEARDFYNRANK---KPTFYVLDVEVTSMS-----------------------------DMNAGVQAFISELRR 112 (177)
T ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEeeccCCcc-----------------------------hHHHHHHHHHHHHHH
Confidence 455677888888776654 445688999984221 113457889999999
Q ss_pred CCC-EEEEEcCCC
Q 024759 168 LGF-KIVLLTGRM 179 (263)
Q Consensus 168 ~G~-~I~~iTgR~ 179 (263)
+|. ++++-|++.
T Consensus 113 ~g~~~~~lYt~~~ 125 (177)
T cd06523 113 LGAKKVGLYIGHH 125 (177)
T ss_pred ccCCcEEEEchHH
Confidence 886 566777764
No 248
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=41.58 E-value=38 Score=25.50 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEe
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNM 236 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~i 236 (263)
+++++.+.|.+.|++|+= ...|.+.|+++|++. ..+.-+.... .. +. -+......|.......|.|.
T Consensus 1 e~~~~a~~l~~lG~~i~A--------T~gTa~~L~~~Gi~~-~~v~~~~~~~-~~-~~--g~~~i~~~i~~~~IdlVIn~ 67 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYA--------TEGTAKFLKEHGIEV-TEVVNKIGEG-ES-PD--GRVQIMDLIKNGKIDLVINT 67 (95)
T ss_dssp THHHHHHHHHHTTSEEEE--------EHHHHHHHHHTT--E-EECCEEHSTG--G-GT--HCHHHHHHHHTTSEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEE--------ChHHHHHHHHcCCCc-eeeeeecccC-cc-CC--chhHHHHHHHcCCeEEEEEe
Confidence 468899999999998764 246889999999983 2332221110 00 00 01134555665555566665
Q ss_pred CCCc
Q 024759 237 GDQW 240 (263)
Q Consensus 237 GDq~ 240 (263)
=+..
T Consensus 68 ~~~~ 71 (95)
T PF02142_consen 68 PYPF 71 (95)
T ss_dssp --TH
T ss_pred CCCC
Confidence 5544
No 249
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=41.13 E-value=1.7e+02 Score=22.66 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEE
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGN 235 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~ 235 (263)
+..+++.+.|.+.|++|+- |. .|.+.|+++|++. ..+.+..+. +.. -+......+++..+..|.|
T Consensus 13 ~~~~~~a~~l~~~G~~i~a-T~-------gTa~~L~~~gi~~--~~v~~~~~~--~~~---~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 13 PELLPTAQKLSKLGYKLYA-TE-------GTADFLLENGIPV--TPVAWPSEE--PQN---DKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred hhHHHHHHHHHHCCCEEEE-cc-------HHHHHHHHcCCCc--eEeeeccCC--CCC---CchhHHHHHHcCCceEEEE
Confidence 5678888999999999963 43 5889999999974 333332221 100 0234556666777888888
Q ss_pred eCCCccc
Q 024759 236 MGDQWCD 242 (263)
Q Consensus 236 iGDq~sD 242 (263)
+=++-.+
T Consensus 78 ~~~~~~~ 84 (116)
T cd01423 78 LPSNRGK 84 (116)
T ss_pred CCCCCCC
Confidence 7544333
No 250
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=41.12 E-value=16 Score=32.18 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred cEEEEecCCcccc-------Cchhhhhc--CCCcccCChHHHHHHHHc-----CCCCCCHHHHHHHHHHHHCCCE
Q 024759 111 DIWILDVDDSLIT-------HVDFYAQN--GFGTEIFDVTALINYLAQ-----GISPALPESLKLYRRLLRLGFK 171 (263)
Q Consensus 111 ~avVfDIDeTll~-------n~~y~~~~--~~g~~~y~~~~~~~wv~~-----~~~paip~~l~l~~~l~~~G~~ 171 (263)
+++.+||.||+.+ -.||.+++ .|=++.+.......|+.+ +.++.....+.++.++.+.+-|
T Consensus 5 kaiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~e~g~~~s~E~lva~~~~wiaed~K 79 (229)
T COG4229 5 KAILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLSEFGIANSEEALVALLLEWIAEDSK 79 (229)
T ss_pred hhheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHHHhCccchHHHHHHHHHHHHhcccc
No 251
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=40.82 E-value=43 Score=31.39 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..|...+++++|+++|++++++..
T Consensus 62 ~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 62 KFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEec
Confidence 346668899999999999987765
No 252
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.10 E-value=41 Score=28.49 Aligned_cols=63 Identities=19% Similarity=0.071 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC-C
Q 024759 91 VVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL-G 169 (263)
Q Consensus 91 ~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~-G 169 (263)
....||..+.+.++..+ +...+++|++++--. +.. .....+.+|++.++++ |
T Consensus 65 ~a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~---------------~~~-----------~~~~~~~~f~~~v~~~~G 117 (184)
T cd06525 65 NPEEQAENFYNTIKGKK-MDLKPALDVEVNFGL---------------SKD-----------ELNDYVLRFIEEFEKLSG 117 (184)
T ss_pred CHHHHHHHHHHhccccC-CCCCeEEEEecCCCC---------------CHH-----------HHHHHHHHHHHHHHHHHC
Confidence 45688888888776532 223578999986310 001 1124678899999998 9
Q ss_pred CEEEEEcCCCc
Q 024759 170 FKIVLLTGRME 180 (263)
Q Consensus 170 ~~I~~iTgR~e 180 (263)
.++++-|+..-
T Consensus 118 ~~~~iY~~~~~ 128 (184)
T cd06525 118 LKVGIYTYTSF 128 (184)
T ss_pred CCeEEEecHHH
Confidence 99999999763
No 253
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=39.94 E-value=41 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.+.+++.++.++++|.+++.||+.++..
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4789999999999999999999987544
No 254
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=39.32 E-value=1.2e+02 Score=23.35 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEe
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNM 236 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~i 236 (263)
-+.++.+.|.++|++|.++|-+.+. .+.....|+.. ..+ ...-. ...+...+. ..++-+.+.++.|+-..
T Consensus 12 ~~~~~~~~L~~~g~~V~ii~~~~~~-----~~~~~~~~i~~-~~~--~~~~k-~~~~~~~~~-~l~k~ik~~~~DvIh~h 81 (139)
T PF13477_consen 12 FIYNLAKELKKRGYDVHIITPRNDY-----EKYEIIEGIKV-IRL--PSPRK-SPLNYIKYF-RLRKIIKKEKPDVIHCH 81 (139)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc-----hhhhHhCCeEE-EEe--cCCCC-ccHHHHHHH-HHHHHhccCCCCEEEEe
Confidence 4678899999999999999997654 23344556643 122 10110 111122233 55666777889987444
Q ss_pred C
Q 024759 237 G 237 (263)
Q Consensus 237 G 237 (263)
+
T Consensus 82 ~ 82 (139)
T PF13477_consen 82 T 82 (139)
T ss_pred c
Confidence 4
No 255
>PRK13937 phosphoheptose isomerase; Provisional
Probab=39.03 E-value=41 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
..+.+++.++.++++|.+++.||+.++..
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 45889999999999999999999987554
No 256
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=38.62 E-value=65 Score=30.27 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCC--CEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLG--FKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G--~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
..++++++.+.++| ++||..=+|+..+-..|.+.|+++|++.
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCce
Confidence 45788999999988 5999999999999999999999999875
No 257
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=37.78 E-value=1.5e+02 Score=24.14 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcc-------cHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEP-------SRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~-------~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
-+..+.+.+...||+|.++..|++. ....+.+.+.....+.+..++|..... . + . ...+.+.+.+
T Consensus 9 va~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~h~--~--D---~-~~L~~~l~~~ 80 (136)
T PF13478_consen 9 VARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTHDHE--L--D---A-EALEAALASP 80 (136)
T ss_dssp CHHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S-CC--C--H---H-HHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcCCch--h--H---H-HHHHHHHcCC
Confidence 4677888999999999999999762 122333444555677766676644322 1 1 1 2233333345
Q ss_pred CeEEEEeCCC
Q 024759 230 YRIIGNMGDQ 239 (263)
Q Consensus 230 y~Iv~~iGDq 239 (263)
.+=+|++|-+
T Consensus 81 ~~YiG~lGS~ 90 (136)
T PF13478_consen 81 ARYIGLLGSR 90 (136)
T ss_dssp -SEEEESS-H
T ss_pred CCEEEeecCc
Confidence 6668888864
No 258
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=37.63 E-value=70 Score=25.75 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCcccchHHHHhhhccccchhhHHHHH--HHHHHHHHhhcccCCCCcEEEEe
Q 024759 67 TVPKVCQHYVADYMLSDQFLQDSKVVT--EEAFKYAKTVKLAGDGKDIWILD 116 (263)
Q Consensus 67 ~vP~~C~~~v~~Y~~~~qY~~D~~~v~--~~A~~ya~~~~~~~~g~~avVfD 116 (263)
.-|.+....+.+.+.+..+++--..+. .++..-|-++.. .+.||||||
T Consensus 41 adp~qA~~~~~~rl~s~~~~~~q~~L~~Ayqgv~~Aw~lgi--~k~PAVVfD 90 (114)
T PF07511_consen 41 ADPQQAEAQARQRLQSPDWQQLQQQLAQAYQGVVDAWSLGI--TKYPAVVFD 90 (114)
T ss_pred CChHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHhCc--cccCEEEEc
Confidence 567777778888899988754444443 222223333332 567999999
No 259
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.38 E-value=56 Score=29.59 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
+.-++.|.+.|+++|++|+|++.+.+... .+.|++.||+.
T Consensus 17 v~Rcl~LA~~l~~~g~~v~f~~~~~~~~~---~~~i~~~g~~v 56 (279)
T TIGR03590 17 VMRCLTLARALHAQGAEVAFACKPLPGDL---IDLLLSAGFPV 56 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHH---HHHHHHcCCeE
Confidence 46678888899889999999988865432 35677778763
No 260
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.23 E-value=1e+02 Score=22.37 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=11.1
Q ss_pred HhcCCeEEEEeCCCc
Q 024759 226 VESGYRIIGNMGDQW 240 (263)
Q Consensus 226 ~~~Gy~Iv~~iGDq~ 240 (263)
...|+.++..+|++-
T Consensus 51 ~~~g~~~~iiiG~~e 65 (94)
T cd00861 51 DLIGIPYRIVVGKKS 65 (94)
T ss_pred HhcCCCEEEEECCch
Confidence 457888888888763
No 261
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=37.16 E-value=94 Score=27.25 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.6
Q ss_pred EEEEeCCCccccCCC
Q 024759 232 IIGNMGDQWCDLLGD 246 (263)
Q Consensus 232 Iv~~iGDq~sDl~G~ 246 (263)
-++.|||+.+|+.-.
T Consensus 217 e~i~~GD~~NDi~m~ 231 (272)
T PRK10530 217 NVVAFGDNFNDISML 231 (272)
T ss_pred HeEEeCCChhhHHHH
Confidence 388999999999753
No 262
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=36.90 E-value=95 Score=26.53 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCC-CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 024759 88 DSKVVTEEAFKYAKTVKLAGDG-KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLL 166 (263)
Q Consensus 88 D~~~v~~~A~~ya~~~~~~~~g-~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~ 166 (263)
.......||..+++.++..+-. ...+++|+.+.-.. ......+..|+++++
T Consensus 68 ~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v~ 119 (192)
T cd06522 68 SAADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTMK 119 (192)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHHH
Confidence 4556777888888777543322 33578999874210 012244678999999
Q ss_pred HCCC-EEEEEcCCC
Q 024759 167 RLGF-KIVLLTGRM 179 (263)
Q Consensus 167 ~~G~-~I~~iTgR~ 179 (263)
++|. ++++=|++.
T Consensus 120 ~~g~~~~~iY~~~~ 133 (192)
T cd06522 120 AAGYKNTDVYTSAS 133 (192)
T ss_pred HcCCCCcEEEccHH
Confidence 9998 777777764
No 263
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=36.80 E-value=1.2e+02 Score=25.96 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCEEEEEcCC-CcccHHHHHHHHHHcCCCC
Q 024759 159 LKLYRRLLRLGFKIVLLTGR-MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR-~e~~r~~T~~nL~~~G~~~ 197 (263)
-+|...|+++|++-++|+|= ++.|...|...+...||..
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v 166 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEV 166 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEE
Confidence 46777888999999999996 5677899999999999854
No 264
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=36.37 E-value=98 Score=22.49 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHCCC-EEEEEcCCC-----cccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGF-KIVLLTGRM-----EPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~-~I~~iTgR~-----e~~r~~T~~nL~~~G~~~ 197 (263)
|+.-+.++++.+..+|. .+.+|||+- ...+....+||++ ++..
T Consensus 11 A~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~ 59 (83)
T PF01713_consen 11 ALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQY 59 (83)
T ss_dssp HHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhcc
Confidence 45566778888888885 677999996 3458899999988 8765
No 265
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=36.33 E-value=67 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCC---CcccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGR---MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR---~e~~r~~T~~nL~~~G~~~ 197 (263)
.+|...+++++..++|+.|+.|+.- .+...+...++++++|++.
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITY 87 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCC
Confidence 3677788888888899999999752 1334667778899999974
No 266
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=36.03 E-value=75 Score=27.11 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCc---ceeeeecCCCCCCcchhhhhHHHHHHHHh-cCCe--EEEEeCCCccccCCCCccceEEEcC
Q 024759 183 RNFTESNLKNVGYHSW---EKLILRETGEWNDTTQRAHKSAERRKLVE-SGYR--IIGNMGDQWCDLLGDYPGHRTFKLP 256 (263)
Q Consensus 183 r~~T~~nL~~~G~~~~---~~Lilr~~~~~~~~~~~~yKs~~R~~l~~-~Gy~--Iv~~iGDq~sDl~G~~~g~r~fkLP 256 (263)
.+...+.|++.|+... ..+-+.+.+- -|...-+.+.+ .|.. -++.|||..+|+.........|-..
T Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~ei~~~~~--------~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~ 189 (215)
T TIGR01487 118 VDEVREIIKERGLNLVDSGFAIHIMKKGV--------DKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVA 189 (215)
T ss_pred HHHHHHHHHhCCeEEEecCceEEEecCCC--------ChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcC
Confidence 4456677777676432 1122222221 24333333332 3333 3788999999998654444555555
Q ss_pred C
Q 024759 257 N 257 (263)
Q Consensus 257 N 257 (263)
|
T Consensus 190 n 190 (215)
T TIGR01487 190 N 190 (215)
T ss_pred C
Confidence 5
No 267
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.48 E-value=49 Score=23.51 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLT 176 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iT 176 (263)
.+.++++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999999999
No 268
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.48 E-value=53 Score=28.70 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++.+++.+.|.+.|++|+ -|+ .|.++|+++|++.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~-------GTAk~L~e~GI~v 44 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STG-------GTAKFLKEAGIPV 44 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHcCCeE
Confidence 678899999999999996 443 4889999999864
No 269
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.36 E-value=1.3e+02 Score=21.50 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcc-------cHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEP-------SRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~-------~r~~T~~nL~~~G~~~ 197 (263)
+-.+++...|.+.|.+|.++..++.- .++...+.|++.|+..
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v 57 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEV 57 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEE
Confidence 44678888899999999999888642 3555666666666643
No 270
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.44 E-value=1.2e+02 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..|...+++++|+++|++++++..
T Consensus 62 ~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 62 GFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEec
Confidence 346668999999999999988764
No 271
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=33.88 E-value=93 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++...++++++.++|+.++.||.-+. +...+++++.+++.
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~---~~~~~~~~~~~~~~ 84 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDP---EEIKQFLEEYGLPF 84 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSH---HHHHHHHHHHTCSS
T ss_pred hhHHHHHhhhhccceEEeeecccccc---cchhhhhhhhcccc
Confidence 35667888888999999999999553 36678888888764
No 272
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.72 E-value=97 Score=24.94 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=29.8
Q ss_pred CCCcccchHHHHhhhccccchhhHHHHH--HHHHHHHHhhcccCCCCcEEEEe
Q 024759 66 PTVPKVCQHYVADYMLSDQFLQDSKVVT--EEAFKYAKTVKLAGDGKDIWILD 116 (263)
Q Consensus 66 ~~vP~~C~~~v~~Y~~~~qY~~D~~~v~--~~A~~ya~~~~~~~~g~~avVfD 116 (263)
.+-|.+....+.+.+.+.++.+.-..+. .|+..-|-++- -.+.||||||
T Consensus 41 padp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw~lG--i~k~PAVV~D 91 (113)
T TIGR03757 41 PADPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAWQLG--VTKIPAVVVD 91 (113)
T ss_pred CCCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcC--CccCCEEEEc
Confidence 3667888888999999877643333332 22222222332 2567999999
No 273
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=33.25 E-value=56 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccH
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSR 183 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r 183 (263)
--+.+++.++.++++|.+++-+|||+...-
T Consensus 121 NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~ 150 (176)
T COG0279 121 NSKNVLKAIEAAKEKGMTVIALTGKDGGKL 150 (176)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 347899999999999999999999997654
No 274
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=32.92 E-value=76 Score=25.93 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCEEEEEcCC-CcccHHHHHHHHHHcCCCC
Q 024759 160 KLYRRLLRLGFKIVLLTGR-MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR-~e~~r~~T~~nL~~~G~~~ 197 (263)
+|-..|+++|++-++|+|= ++.+-..|...+...||..
T Consensus 102 ~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v 140 (174)
T PF00857_consen 102 DLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRV 140 (174)
T ss_dssp SHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EE
T ss_pred cccccccccccceEEEcccccCcEEehhHHHHHHCCCEE
Confidence 5677888899999999995 5777899999999999964
No 275
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.91 E-value=85 Score=28.78 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCC
Q 024759 151 ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETG 207 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~ 207 (263)
..++.||=...=..|.+.|+..++||..+..... +.|++.||-+ +|++.+.
T Consensus 69 PN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~---d~l~~~g~GY---Iivk~Dp 119 (277)
T PRK00994 69 PNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK---DAMEEQGLGY---IIVKADP 119 (277)
T ss_pred CCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH---HHHHhcCCcE---EEEecCc
Confidence 4466666666666778889999999998865433 8999999864 5666553
No 276
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=32.71 E-value=2.6e+02 Score=23.80 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
.-.++++.+.+.++.-+++++.+... ...+.|++.|+|.
T Consensus 43 ~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~~ipv 81 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSA--EQLEDLLKRGIPV 81 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCh--HHHHHHHhCCCCE
Confidence 34567788888898877777654332 3468888899985
No 277
>PRK10658 putative alpha-glucosidase; Provisional
Probab=32.59 E-value=1.3e+02 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGY 195 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~ 195 (263)
.|.-.+++++|+++|++++++..-.-.+....-+...+.||
T Consensus 324 FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 324 FPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred CCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 45556899999999999998876432223333444556666
No 278
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=32.03 E-value=2.4e+02 Score=28.46 Aligned_cols=103 Identities=14% Similarity=0.284 Sum_probs=64.1
Q ss_pred eeeeeeecCccCC---------CCCc-ccchHHHHhhhccccchhhHHHHHHHHHHHH--HhhcccCCCCcEEEEecCCc
Q 024759 53 WRFGVETKNIRDL---------PTVP-KVCQHYVADYMLSDQFLQDSKVVTEEAFKYA--KTVKLAGDGKDIWILDVDDS 120 (263)
Q Consensus 53 wrl~vE~nn~~~~---------~~vP-~~C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya--~~~~~~~~g~~avVfDIDeT 120 (263)
|=|.+-+.|-.-| ..+| .+|+.....++ ++|.++==.+++||+--+ +.|. ||+
T Consensus 297 RPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I--~~~i~eki~~A~qaI~q~a~~KI~-------------dgd 361 (556)
T KOG1467|consen 297 RPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDI--DRFIAEKIILADQAISQHAVTKIQ-------------DGD 361 (556)
T ss_pred CCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh-------------cCC
Confidence 7777777775543 1334 78887766666 566665556666666543 3444 455
Q ss_pred cccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCC--CEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 121 LITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLG--FKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 121 ll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G--~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++-+ ||. .+. +-.++-++++.| |+|++|-.|+.-.-....+-|..+|++.
T Consensus 362 vilt--------yg~----------------s~v---V~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~Ginc 413 (556)
T KOG1467|consen 362 VLLT--------YGS----------------SSV---VNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINC 413 (556)
T ss_pred EEEE--------ecc----------------hHH---HHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCe
Confidence 5544 221 111 122233344444 8999999999877778889999999985
No 279
>PRK13938 phosphoheptose isomerase; Provisional
Probab=31.93 E-value=63 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.-.+.+++.++.++++|.+++.+|+.+...
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 345889999999999999999999987543
No 280
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=31.72 E-value=2e+02 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
|...++.+...++|+.++.|+..++.. ..+.+++++++.
T Consensus 49 p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~~~~~~ 87 (146)
T PF08534_consen 49 PYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKKYGINF 87 (146)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHHTTTTS
T ss_pred hhHHhhhhhhccCceEEEEecccCCHH---HHHHHHhhCCCc
Confidence 455667677788999999888877554 678888888774
No 281
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=31.49 E-value=3.6e+02 Score=24.39 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHCCCEEEEE-cC-------------CCc--ccHHH------------HHHHHHHcCCCCcceeeeec
Q 024759 154 ALPESLKLYRRLLRLGFKIVLL-TG-------------RME--PSRNF------------TESNLKNVGYHSWEKLILRE 205 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~i-Tg-------------R~e--~~r~~------------T~~nL~~~G~~~~~~Lilr~ 205 (263)
.+....+.+.+++++|.+|++| || |+. ..++. -.+-|.+.|++.+ ++++..
T Consensus 32 ~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~-q~llT~ 110 (266)
T PRK12314 32 RIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVVA-QILLTR 110 (266)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-EEEEec
Confidence 3555667777888999999986 65 111 11111 1246678899863 455544
Q ss_pred CCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCc
Q 024759 206 TGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQW 240 (263)
Q Consensus 206 ~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~ 240 (263)
++. .............+.+.+.|+-.|.+=+|..
T Consensus 111 ~~~-~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v 144 (266)
T PRK12314 111 DDF-DSPKSRANVKNTFESLLELGILPIVNENDAV 144 (266)
T ss_pred ccc-cchHHHHHHHHHHHHHHHCCCEEEEcCCCCe
Confidence 432 2211111112344455567887666633444
No 282
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=31.46 E-value=50 Score=26.64 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEcC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTg 177 (263)
|.+++..++++++|.+|+-|||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 7889999999999999999986
No 283
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=31.24 E-value=3.1e+02 Score=22.88 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCEEEEEcCCCcccH----HHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEE
Q 024759 160 KLYRRLLRLGFKIVLLTGRMEPSR----NFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIG 234 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR~e~~r----~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~ 234 (263)
..++.+.+.|++++.-|-.+.... +.-.+++.+.--++ .=++|...+. ...+.... ......++++||+++.
T Consensus 111 ~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g-~Iil~Hd~~~-~~~t~~~l-~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 111 AVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPG-DIILLHASDS-AKQTVKAL-PTIIKKLKEKGYEFVT 186 (191)
T ss_pred HHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCC-CEEEEeCCCC-cHhHHHHH-HHHHHHHHHCCCEEEE
Confidence 345667889999988776543221 22223333332232 3356664322 22222233 3566678889999774
No 284
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=31.18 E-value=46 Score=22.35 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=18.7
Q ss_pred EcCCCcccHHHHHHHHHHcCCCCcceeeeecC
Q 024759 175 LTGRMEPSRNFTESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 175 iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (263)
+||.. ++..-.+||+++|++. +.+++
T Consensus 11 lTG~k--~~~~Q~~~L~~~Gi~~----~~~~~ 36 (47)
T PF13986_consen 11 LTGYK--RPSKQIRWLRRNGIPF----VVRAD 36 (47)
T ss_pred HHCCC--CHHHHHHHHHHCCCee----EECCC
Confidence 67755 4566679999999985 55544
No 285
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=30.58 E-value=1.5e+02 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHH----HHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNL----KNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL----~~~G~~~ 197 (263)
.|...+++++|+++|+++++.....- |+-=.+.+ ...|+.+
T Consensus 65 Fpdp~~~i~~l~~~g~~~~~~~~P~v--~~w~~~~~~~~~~~~Gvdg 109 (265)
T cd06589 65 FPNPKSMIDELHDNGVKLVLWIDPYI--REWWAEVVKKLLVSLGVDG 109 (265)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeChhH--HHHHHHHHHHhhccCCCCE
Confidence 45668899999999999999887642 33333333 4558876
No 286
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=30.48 E-value=1.9e+02 Score=26.45 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..|...+++++|+++|+++++...
T Consensus 64 ~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 64 RFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEec
Confidence 445668999999999999998764
No 287
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=30.19 E-value=72 Score=25.97 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=40.9
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
.-.+.|=+||+-+-. ..+..+.+.|+.|+..++++++.+.|++++..+---+ .+...+++
T Consensus 35 dV~iF~t~dG~~l~~-------------------K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~~-~~~~~ed~ 94 (120)
T COG2044 35 DVTIFFTMDGVTLVK-------------------KKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSLK-LRGIKEDD 94 (120)
T ss_pred ceEEEEEeccceeee-------------------ecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchhh-hcCcchhh
Confidence 346778999986643 1223344568889999999999999999988764332 33333344
Q ss_pred H
Q 024759 190 L 190 (263)
Q Consensus 190 L 190 (263)
+
T Consensus 95 l 95 (120)
T COG2044 95 L 95 (120)
T ss_pred h
Confidence 4
No 288
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=30.09 E-value=3.2e+02 Score=24.08 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=54.4
Q ss_pred ccchh-hHHHHHHHHHHHHHhhcccCCC-CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHc-----------
Q 024759 83 DQFLQ-DSKVVTEEAFKYAKTVKLAGDG-KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQ----------- 149 (263)
Q Consensus 83 ~qY~~-D~~~v~~~A~~ya~~~~~~~~g-~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~----------- 149 (263)
++|+. -+..+.++....|-++.. || .++|.|.-+-.=+. +.+..++..|+..
T Consensus 16 ~~yk~G~vQ~~~Er~lalA~~~Dd--DG~i~v~~Fs~~~~~~~-------------~vt~~~~~~~v~~~~~~~~~~~~~ 80 (200)
T PF10138_consen 16 PLYKDGTVQRVVERILALAAQFDD--DGEIDVWFFSTEFDRLP-------------DVTLDNYEGYVDELHAGLPDWGRM 80 (200)
T ss_pred hhhhCccHHHHHHHHHHHHhhcCC--CCceEEEEeCCCCCcCC-------------CcCHHHHHHHHHHHhccccccCCC
Confidence 34443 345778888888766543 44 67888865332221 1223333344332
Q ss_pred C---CCCCCHHHHHHHHHHHHC--CCEEEEEcCCCcccHHHHHHHHHHc
Q 024759 150 G---ISPALPESLKLYRRLLRL--GFKIVLLTGRMEPSRNFTESNLKNV 193 (263)
Q Consensus 150 ~---~~paip~~l~l~~~l~~~--G~~I~~iTgR~e~~r~~T~~nL~~~ 193 (263)
| .+|++..+++.|..-... -.-|+|+|.=....+..+.+-|+++
T Consensus 81 G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a 129 (200)
T PF10138_consen 81 GGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA 129 (200)
T ss_pred CCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc
Confidence 1 234555555555432222 3568899988777777788888766
No 289
>smart00463 SMR Small MutS-related domain.
Probab=30.00 E-value=94 Score=22.41 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHCCC--EEEEEcCCCcc-------cHHHHHHHHHHcCCCC
Q 024759 153 PALPESLKLYRRLLRLGF--KIVLLTGRMEP-------SRNFTESNLKNVGYHS 197 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~--~I~~iTgR~e~-------~r~~T~~nL~~~G~~~ 197 (263)
.|+.-..++++.+.+.|. .+.+||||-.. -+....++|...+|+.
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~ 66 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRF 66 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhccccc
Confidence 456667788899999996 78899998532 2455555666666664
No 290
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=29.97 E-value=1.1e+02 Score=28.79 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEcC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTg 177 (263)
|...+++++|+++|++++++..
T Consensus 66 p~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 66 LKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred ccHHHHHHHHHHCCCEEEEEEe
Confidence 3348999999999999987763
No 291
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=29.75 E-value=1.2e+02 Score=28.73 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=13.5
Q ss_pred CCCcEEEEecCCccccC
Q 024759 108 DGKDIWILDVDDSLITH 124 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n 124 (263)
-.+...|+||||-|+.-
T Consensus 174 mpk~iaVvDIDERli~f 190 (354)
T COG1568 174 MPKRIAVVDIDERLIKF 190 (354)
T ss_pred CCceEEEEechHHHHHH
Confidence 34568999999999864
No 292
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=29.19 E-value=56 Score=31.48 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCC--CcccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGR--MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR--~e~~r~~T~~nL~~~G~~~ 197 (263)
-+.-+.+++++|+++|+++.+||=- ..+.+.+..+++.+|-.+.
T Consensus 204 GLHFT~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MH~ 249 (366)
T PRK01424 204 GLHFTKDILDKLKAKGIQTAFLTLHVGAGTFLPVKTENIHEHKMHT 249 (366)
T ss_pred cCCCCHHHHHHHHHCCCeEEEEEEeecCCCCcCccccccccCCccc
Confidence 3444679999999999999999954 2344666667777777664
No 293
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=28.97 E-value=35 Score=30.22 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=12.4
Q ss_pred cEEEEecCCccccC
Q 024759 111 DIWILDVDDSLITH 124 (263)
Q Consensus 111 ~avVfDIDeTll~n 124 (263)
++|++||.||+++-
T Consensus 2 ~~~l~diegt~~~i 15 (220)
T TIGR01691 2 KNVLLDIEGTTGSI 15 (220)
T ss_pred CEEEEecCCCcccH
Confidence 58999999999974
No 294
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=28.41 E-value=1.1e+02 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
-++.+.-++-+.+++.+++|.++|=..+. .+.+.+-|.++|+.+
T Consensus 130 v~V~~~d~le~~v~~~dv~iaiLtVPa~~-AQ~vad~Lv~aGVkG 173 (211)
T COG2344 130 VPVYDLDDLEKFVKKNDVEIAILTVPAEH-AQEVADRLVKAGVKG 173 (211)
T ss_pred eeeechHHHHHHHHhcCccEEEEEccHHH-HHHHHHHHHHcCCce
Confidence 56677778888889999999999996654 567889999999987
No 295
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.34 E-value=1.1e+02 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcC
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVG 194 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G 194 (263)
..+.+.|.++|.+|+++..|.+...+.+.+.++..|
T Consensus 18 ~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~ 53 (250)
T PRK08063 18 KAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG 53 (250)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 456777788888887777776655555555555443
No 296
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.18 E-value=1.5e+02 Score=26.47 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcc----cHHHHHHHHHHcCCCCcceeeeecCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEP----SRNFTESNLKNVGYHSWEKLILRETG 207 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~----~r~~T~~nL~~~G~~~~~~Lilr~~~ 207 (263)
..+..+-..|+++|++|.|++-.++. ..+.-.+.|+++|+. .+.+-.++
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~---~~~~~~P~ 101 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGID---RLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH-------EEEE--S
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCC---EEEEECCC
Confidence 45677778999999999999998643 356666778888874 34444443
No 297
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=28.09 E-value=81 Score=27.48 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
.+.+++.++.++++|.+|+.|||.+..
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 478999999999999999999998754
No 298
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=28.07 E-value=58 Score=25.39 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
+-+.+.+-+.|+++|++|.+.|...-. +-+.+.|++.
T Consensus 12 v~P~lala~~L~~rGh~V~~~~~~~~~------~~v~~~Gl~~ 48 (139)
T PF03033_consen 12 VYPFLALARALRRRGHEVRLATPPDFR------ERVEAAGLEF 48 (139)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEETGGGH------HHHHHTT-EE
T ss_pred HHHHHHHHHHHhccCCeEEEeecccce------ecccccCceE
Confidence 356788999999999999999986522 3336778864
No 299
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=27.94 E-value=1.5e+02 Score=27.40 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
|....+..|+..++++|++|++++-.+
T Consensus 15 ~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 15 IGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 455678999999999999999988764
No 300
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.93 E-value=80 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
-.+.+++.++.++++|.+|+.||+.+..
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3578999999999999999999998754
No 301
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=27.91 E-value=1.2e+02 Score=28.10 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCC--CEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 158 SLKLYRRLLRLG--FKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 158 ~l~l~~~l~~~G--~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++.++..+.++| ++|++.=+|+..+-..|.+.|.++|++.
T Consensus 128 v~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~v 169 (301)
T TIGR00511 128 ALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPV 169 (301)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCE
Confidence 455666665443 6888888888766667888888888874
No 302
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.87 E-value=1.6e+02 Score=31.16 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGY 195 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~ 195 (263)
.|....++++|+++|++++.+-.=.-.+...--+-+.+.||
T Consensus 320 FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 320 FPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred CCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 34555999999999999998877443333344566777777
No 303
>PRK12342 hypothetical protein; Provisional
Probab=27.76 E-value=4.7e+02 Score=23.79 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHH-HHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPSRNF-TESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYR 231 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~-T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~ 231 (263)
.|+..++++ ++.|.+|..+|==++.-.+. ..+.--..|-+. ..++..... .+.+...-=...-..+++.||.
T Consensus 39 ~AlE~AlrL----k~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~--avli~d~~~-~g~D~~ata~~La~~i~~~~~D 111 (254)
T PRK12342 39 NAIEAASQL----ATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHS--LYLVQDAQL-EHALPLDTAKALAAAIEKIGFD 111 (254)
T ss_pred HHHHHHHHH----hhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCE--EEEEecCcc-CCCCHHHHHHHHHHHHHHhCCC
Confidence 344555544 34688888888766543333 334444556642 233332211 1211111111222344445777
Q ss_pred EEEEeCCCccccCCC
Q 024759 232 IIGNMGDQWCDLLGD 246 (263)
Q Consensus 232 Iv~~iGDq~sDl~G~ 246 (263)
+| ..|.|-+|-..+
T Consensus 112 LV-l~G~~s~D~~tg 125 (254)
T PRK12342 112 LL-LFGEGSGDLYAQ 125 (254)
T ss_pred EE-EEcCCcccCCCC
Confidence 65 678888887654
No 304
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=27.75 E-value=87 Score=30.61 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCCCCCHHHH-------------HHHHHHHHCCC--EEEEEcCCCcccHHHHHHHHHHcCCCC--cce-ee
Q 024759 141 TALINYLAQGISPALPESL-------------KLYRRLLRLGF--KIVLLTGRMEPSRNFTESNLKNVGYHS--WEK-LI 202 (263)
Q Consensus 141 ~~~~~wv~~~~~paip~~l-------------~l~~~l~~~G~--~I~~iTgR~e~~r~~T~~nL~~~G~~~--~~~-Li 202 (263)
+..++|+++|++..+||++ .|++++.+.-+ -|++-|||-...-.-|. -..=||+|. -|+ ||
T Consensus 277 ~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRllI 355 (450)
T COG1224 277 EKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTD-IESPHGIPLDLLDRLLI 355 (450)
T ss_pred HHHHHHHhcCcEEeecceEEEechhhhhHHHHHHHHHHhhcccCcEEEEEcCCceeeecccC-CcCCCCCCHhhhhheeE
Confidence 4688999999999999976 67788887776 45677999766544554 455688886 244 44
Q ss_pred eecC
Q 024759 203 LRET 206 (263)
Q Consensus 203 lr~~ 206 (263)
.+..
T Consensus 356 I~t~ 359 (450)
T COG1224 356 ISTR 359 (450)
T ss_pred EecC
Confidence 4443
No 305
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.69 E-value=3.1e+02 Score=21.75 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHCCCEEEEEcCCCc-----ccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEeCCCc
Q 024759 166 LRLGFKIVLLTGRME-----PSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIGNMGDQW 240 (263)
Q Consensus 166 ~~~G~~I~~iTgR~e-----~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~ 240 (263)
++...+.+++||-.. ...+.-.+.|.+.|++. +.+++-+.. .++.+.=...++.+.+.|.+=+..|-|.+
T Consensus 31 ~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~-~~I~~e~~s----~~T~ena~~~~~~~~~~~~~~i~lVTs~~ 105 (150)
T cd06259 31 RAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPA-EAILLEDRS----TNTYENARFSAELLRERGIRSVLLVTSAY 105 (150)
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCH-HHeeecCCC----CCHHHHHHHHHHHHHhcCCCeEEEECCHH
Confidence 333377889999742 35678889999999975 566664432 12222222344556666666666776655
Q ss_pred c
Q 024759 241 C 241 (263)
Q Consensus 241 s 241 (263)
.
T Consensus 106 H 106 (150)
T cd06259 106 H 106 (150)
T ss_pred H
Confidence 3
No 306
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=27.61 E-value=2.9e+02 Score=21.27 Aligned_cols=41 Identities=5% Similarity=-0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHHH-HHCCCEEEEEcCCCcccHHHHHHH-HHHcCCC
Q 024759 156 PESLKLYRRL-LRLGFKIVLLTGRMEPSRNFTESN-LKNVGYH 196 (263)
Q Consensus 156 p~~l~l~~~l-~~~G~~I~~iTgR~e~~r~~T~~n-L~~~G~~ 196 (263)
..+.+.++++ .+..+-|+++|.+-...-..+.+. +.+.-.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P 72 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEP 72 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCC
Confidence 5678888887 677799999999976666667777 4444444
No 307
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.58 E-value=1.8e+02 Score=25.90 Aligned_cols=72 Identities=25% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHCCCEEEEE-cCCCcccHHHHHHHHHHcCCCCc---ceeeeecCCCCCCcchhhhhHHHHHHHH-hcC--C-eEEEEe
Q 024759 165 LLRLGFKIVLL-TGRMEPSRNFTESNLKNVGYHSW---EKLILRETGEWNDTTQRAHKSAERRKLV-ESG--Y-RIIGNM 236 (263)
Q Consensus 165 l~~~G~~I~~i-TgR~e~~r~~T~~nL~~~G~~~~---~~Lilr~~~~~~~~~~~~yKs~~R~~l~-~~G--y-~Iv~~i 236 (263)
+...++.++++ -+. +...+...+.|+..|+..+ ..+-+.+.++ |...-+.+. ..| - .-++.|
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~---------Kg~al~~l~~~~~i~~~~~v~~~ 213 (273)
T PRK00192 144 AKDREFSEPFLWNGS-EAAKERFEEALKRLGLKVTRGGRFLHLLGGGD---------KGKAVRWLKELYRRQDGVETIAL 213 (273)
T ss_pred HHhcccCCceeecCc-hHHHHHHHHHHHHcCCEEEECCeEEEEeCCCC---------HHHHHHHHHHHHhccCCceEEEE
Confidence 44556655555 333 3445666777877676421 0111112112 322222222 111 2 458899
Q ss_pred CCCccccCCC
Q 024759 237 GDQWCDLLGD 246 (263)
Q Consensus 237 GDq~sDl~G~ 246 (263)
||..+|+.-.
T Consensus 214 GDs~NDi~m~ 223 (273)
T PRK00192 214 GDSPNDLPML 223 (273)
T ss_pred cCChhhHHHH
Confidence 9999999753
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.48 E-value=2.7e+02 Score=20.90 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
-+..+.+.|.+.|.+|+++...++.
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHH
Confidence 3566777777766678888776644
No 309
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=27.23 E-value=54 Score=31.30 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCC--CcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGR--MEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYR 231 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR--~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~ 231 (263)
.+.-+-+++++|+++|+++.+||=- ..+.+.+..+++.+|-.+. +...+.... .+.-++-+++|-|
T Consensus 182 GLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~pV~~e~i~~H~mh~-E~~~I~~~t-----------a~~i~~ak~~G~R 249 (341)
T PF02547_consen 182 GLHFTEELLERLKAKGVEIAFVTLHVGLGTFRPVRVEDIEEHKMHS-EYYEIPEET-----------AEAINKAKAEGGR 249 (341)
T ss_dssp GGG--HHHHHHHHHHTEEEEEEEEEECGGGG----------------EEEEE-HHH-----------HHHHHHHHHTT--
T ss_pred CCCCCHHHHHHHHHCCCeEEEEEEEeccCcccccCcCcccCCCCcc-eEEEECHHH-----------HHHHHHHHHhCCc
Confidence 4566889999999999999999854 2355677788888887764 434432211 1222333457888
Q ss_pred EEEE
Q 024759 232 IIGN 235 (263)
Q Consensus 232 Iv~~ 235 (263)
|+++
T Consensus 250 ViAV 253 (341)
T PF02547_consen 250 VIAV 253 (341)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 310
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=27.17 E-value=2.2e+02 Score=27.87 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCC
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGR 178 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR 178 (263)
+.+-|-||=|.||-+. | ..+ .+-.+++.-+-.|.++|++|-+||.=
T Consensus 146 ~L~LvTFDgDvTLY~D-------G---~sl--------------~~d~pvi~~ii~LL~~gv~VgIVTAA 191 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED-------G---ASL--------------EPDNPVIPRIIKLLRRGVKVGIVTAA 191 (408)
T ss_pred CceEEEEcCCcccccC-------C---CCC--------------CCCchHHHHHHHHHhcCCeEEEEeCC
Confidence 6678999999999865 1 111 11233444444667889999999974
No 311
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.14 E-value=1.8e+02 Score=22.57 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++...++++.+.+.|+.|+.||..+ .+...+++++.|++.
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~~~~~ 82 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAEKYGLPF 82 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCCc
Confidence 4666777888888999999999643 345668888888763
No 312
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=26.72 E-value=80 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
--+.++.+.|.++|++|.+++.+.+..
T Consensus 16 ~~~~~l~~~l~~~G~~v~v~~~~~~~~ 42 (177)
T PF13439_consen 16 RVVLNLARALAKRGHEVTVVSPGVKDP 42 (177)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESS-TTS
T ss_pred HHHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 346789999999999999998886544
No 313
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=26.37 E-value=1.8e+02 Score=22.90 Aligned_cols=41 Identities=7% Similarity=-0.095 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
.+|...++++++.++|+.++.||.-+ .+...+++++.+++.
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~~~~~~~ 87 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDS---PFSLRAWAEENGLTF 87 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHHhcCCCc
Confidence 45677788888889999999998654 334567888888764
No 314
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=26.18 E-value=1.3e+02 Score=28.07 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCC--CEEEEEcCCCcccH-HHHHHHHHHcCCCC
Q 024759 158 SLKLYRRLLRLG--FKIVLLTGRMEPSR-NFTESNLKNVGYHS 197 (263)
Q Consensus 158 ~l~l~~~l~~~G--~~I~~iTgR~e~~r-~~T~~nL~~~G~~~ 197 (263)
++.+++.+.++| ++|++.=+|+..+- ..|.+.|.++|++.
T Consensus 139 v~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~v 181 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDV 181 (303)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCE
Confidence 456666666664 67776667887665 67888899989875
No 315
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.06 E-value=1.1e+02 Score=24.23 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCEEEEEcCCC--cccHHHHHHHHHHcC
Q 024759 158 SLKLYRRLLRLGFKIVLLTGRM--EPSRNFTESNLKNVG 194 (263)
Q Consensus 158 ~l~l~~~l~~~G~~I~~iTgR~--e~~r~~T~~nL~~~G 194 (263)
-.++.+.+.++|..++++++|+ ....+.+.+.|+..|
T Consensus 13 G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~ 51 (167)
T PF00106_consen 13 GRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG 51 (167)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCceEEEEeeecccccccccccccccccc
Confidence 3566778888888888888887 455666777888666
No 316
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.96 E-value=86 Score=28.33 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
..+.++++++.++++|.+|+.||+.....
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 45789999999999999999999987653
No 317
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.96 E-value=74 Score=31.46 Aligned_cols=39 Identities=26% Similarity=0.132 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNV 193 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~ 193 (263)
-|....++++|++.|-++|+|||-+-...+...+.|-..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGP 223 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGC
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCC
Confidence 467889999999999999999998877788888888544
No 318
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.95 E-value=3e+02 Score=22.55 Aligned_cols=81 Identities=7% Similarity=0.020 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCcc---cHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEEE
Q 024759 158 SLKLYRRLLRLGFKIVLLTGRMEP---SRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRIIG 234 (263)
Q Consensus 158 ~l~l~~~l~~~G~~I~~iTgR~e~---~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~ 234 (263)
.-++++.+.+.+..++-+|+..-. .-..+.+-|+++|... -.++.-+..- -+. . -....+.++++.|+.=+.
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~v-i~~--~-d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLV-VGK--Q-DFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcC-cCh--h-hhHHHHHHHHHcCCCEEE
Confidence 456777888888999988887532 3466788899999864 2233333211 010 0 122345567788864444
Q ss_pred EeCCCcccc
Q 024759 235 NMGDQWCDL 243 (263)
Q Consensus 235 ~iGDq~sDl 243 (263)
-=|+.++++
T Consensus 116 ~pgt~~~~i 124 (134)
T TIGR01501 116 APGTPPEVV 124 (134)
T ss_pred CcCCCHHHH
Confidence 334444443
No 319
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=47 Score=31.71 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCC--CcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeE
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGR--MEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRI 232 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR--~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~I 232 (263)
+.-+-+|+.+|+++|+++.|||=- -.+.+.+-.+|..+|-.+. +..-+ ++ . =.+.-++-.++|-||
T Consensus 185 LHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~MH~-E~~~v-------~~-e---ta~~i~~~k~~GgRI 252 (348)
T COG0809 185 LHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHKMHS-EYYEV-------PQ-E---TADAINAAKARGGRI 252 (348)
T ss_pred CCCCHHHHHHHHHCCceEEEEEEEecccccccceeccccccccch-hheec-------CH-H---HHHHHHHHHHcCCeE
Confidence 445779999999999999999843 2233445555555555443 11111 10 0 113334555678888
Q ss_pred EEE
Q 024759 233 IGN 235 (263)
Q Consensus 233 v~~ 235 (263)
+++
T Consensus 253 iaV 255 (348)
T COG0809 253 IAV 255 (348)
T ss_pred EEE
Confidence 864
No 320
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.70 E-value=92 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCcc
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
-.+.+++.++.++++|.+++.||+..+.
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3488999999999999999999998654
No 321
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=25.58 E-value=1.6e+02 Score=33.21 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHh---c
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVE---S 228 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~---~ 228 (263)
+-.+.-..-|++.|+..|+.+.+.|-.. ..-++-+..|.-||| ++||-++. . +.+.|+.|.+ .
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMt-kmLDVLeqFLnyHgy-----lY~RLDg~--t------~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMT-KMLDVLEQFLNYHGY-----LYVRLDGN--T------SVEQRQALMERFNA 1324 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHH-HHHHHHHHHHhhcce-----EEEEecCC--c------cHHHHHHHHHHhcC
Confidence 3344444567899999999999999865 345777888877776 57887764 2 6788888875 3
Q ss_pred CCeEEEEe
Q 024759 229 GYRIIGNM 236 (263)
Q Consensus 229 Gy~Iv~~i 236 (263)
.-||..+|
T Consensus 1325 D~RIfcfI 1332 (1958)
T KOG0391|consen 1325 DRRIFCFI 1332 (1958)
T ss_pred CCceEEEE
Confidence 34566555
No 322
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.55 E-value=4e+02 Score=23.84 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHhcCCeE-EEEeCCCccc
Q 024759 224 KLVESGYRI-IGNMGDQWCD 242 (263)
Q Consensus 224 ~l~~~Gy~I-v~~iGDq~sD 242 (263)
.|.++||+= ++++|...+.
T Consensus 112 ~Li~~Gh~~~I~~i~~~~~~ 131 (279)
T PF00532_consen 112 YLIKKGHRRPIAFIGGPEDS 131 (279)
T ss_dssp HHHHTTCCSTEEEEEESTTT
T ss_pred HHHhcccCCeEEEEecCcch
Confidence 455566666 6666655443
No 323
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=25.33 E-value=2e+02 Score=23.92 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHH-HH
Q 024759 89 SKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRL-LR 167 (263)
Q Consensus 89 ~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l-~~ 167 (263)
......||..+++.++....+.-.+++|+......+. + .......+..|++++ ..
T Consensus 63 ~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~~-------------~-----------~~~~~~~~~~f~~~~~~~ 118 (181)
T PF01183_consen 63 SSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNNP-------------S-----------KSDNTAWVKAFLDEVEKA 118 (181)
T ss_dssp HCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCCS-------------S-----------HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCCcceEEEeccccccCCC-------------C-----------HHHHHHHHHHHHHHHHHH
Confidence 4567889998888885222333457899996511110 0 012235577889999 44
Q ss_pred CCCEEEEEcCCC
Q 024759 168 LGFKIVLLTGRM 179 (263)
Q Consensus 168 ~G~~I~~iTgR~ 179 (263)
.|.++.+=|++.
T Consensus 119 ~G~~~~iY~~~~ 130 (181)
T PF01183_consen 119 AGYKPGIYTSKS 130 (181)
T ss_dssp CTSEEEEEEEHH
T ss_pred hCCceeEeecHH
Confidence 899999888864
No 324
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.72 E-value=4.4e+02 Score=22.41 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=61.0
Q ss_pred CCCcEEEEecCCccccCchhhhhcCCCcccCChHH-HHHHHHcC---------CCCCCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 108 DGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTA-LINYLAQG---------ISPALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 108 ~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~-~~~wv~~~---------~~paip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..+-|+.+|-|+.... .++ ++.+. |++....| .+.+. ..|.+.|...|+++++.+|
T Consensus 22 ~~riAvfID~~Nv~~~--------~~~---~d~~~i~~~ls~~G~i~~~R~Y~~a~a~---~~l~~~l~~~Gf~pv~~kG 87 (160)
T TIGR00288 22 EKKIGLLVDGPNMLRK--------EFN---IDLDEIREILSEYGDIKIGKVLLNQYAS---DKLIEAVVNQGFEPIIVAG 87 (160)
T ss_pred CCcEEEEEeCCccChh--------hhc---cCHHHHHHHHHhcCCeEEEEEEechhcc---HHHHHHHHHCCceEEEecC
Confidence 3445999999997421 111 34333 55555443 22222 3578899999999999888
Q ss_pred CCcccHHHHHHHHHHcCCCCcceeee-ecCCCCCCcchhhhhHHHHHHHHhcCCeEEEEe
Q 024759 178 RMEPSRNFTESNLKNVGYHSWEKLIL-RETGEWNDTTQRAHKSAERRKLVESGYRIIGNM 236 (263)
Q Consensus 178 R~e~~r~~T~~nL~~~G~~~~~~Lil-r~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv~~i 236 (263)
. .--..+++-|.-+==+..+..+| .+++| ....-.++++.|-+++++-
T Consensus 88 ~--~Dv~laIDame~~~~~~iD~~vLvSgD~D---------F~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 88 D--VDVRMAVEAMELIYNPNIDAVALVTRDAD---------FLPVINKAKENGKETIVIG 136 (160)
T ss_pred c--ccHHHHHHHHHHhccCCCCEEEEEeccHh---------HHHHHHHHHHCCCEEEEEe
Confidence 3 33556777776530022355554 44444 3345557777888877643
No 325
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=1.7e+02 Score=26.56 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTg 177 (263)
+.-+..++++++.+.++|+.-++.|.
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecc
Confidence 34568899999999999998887775
No 326
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=24.65 E-value=2e+02 Score=27.65 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc---HHHHHHHHHHcCC
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS---RNFTESNLKNVGY 195 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~---r~~T~~nL~~~G~ 195 (263)
...|...++++.|+++|+++++...-.=.. ....-+.+++.|+
T Consensus 80 ~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~ 125 (441)
T PF01055_consen 80 ERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGY 125 (441)
T ss_dssp TTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-
T ss_pred ccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCc
Confidence 355788999999999999988655432111 1235667777777
No 327
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=24.56 E-value=2.7e+02 Score=23.24 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=42.3
Q ss_pred CCcEEEEecCCccccCchhhhhc--CCCcccCChHHHHHHHHcC-CCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQN--GFGTEIFDVTALINYLAQG-ISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNF 185 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~--~~g~~~y~~~~~~~wv~~~-~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~ 185 (263)
.++++.||+|=|++.- +... ++.-.||- .+.-..+ ...-.+.....+..|+++|++.+..|.-...+...
T Consensus 4 ~p~~~~fdldytiwP~---~vdthl~~pfkP~k----~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~ 76 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPR---LVDTHLDYPFKPFK----CECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIAS 76 (144)
T ss_pred CCceeEEeccceeeeE---EEEecccccccccc----cCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHH
Confidence 4678899999888752 1110 11111110 0000222 23455778888999999999999999876655444
Q ss_pred HH
Q 024759 186 TE 187 (263)
Q Consensus 186 T~ 187 (263)
+.
T Consensus 77 q~ 78 (144)
T KOG4549|consen 77 QG 78 (144)
T ss_pred HH
Confidence 33
No 328
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=24.47 E-value=2.1e+02 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHc-----CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCC
Q 024759 143 LINYLAQ-----GISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETG 207 (263)
Q Consensus 143 ~~~wv~~-----~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~ 207 (263)
..+|-.+ +..++.||-...=..|.+.|+..++||..+.... .+.|++.||-+ +||+.+.
T Consensus 55 ~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~---kd~l~~~g~GY---Iivk~Dp 118 (276)
T PF01993_consen 55 LKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKA---KDALEEEGFGY---IIVKADP 118 (276)
T ss_dssp HHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGG---HHHHHHTT-EE---EEETTS-
T ss_pred HHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhh---HHHHHhcCCcE---EEEecCc
Confidence 3455444 4667889888888888899999999999775442 48899999854 5666543
No 329
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=24.34 E-value=1.6e+02 Score=27.56 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTG 177 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTg 177 (263)
..|...++++.|+++|++++++..
T Consensus 62 ~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 62 RFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEEe
Confidence 445668999999999999986543
No 330
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=24.24 E-value=1.5e+02 Score=25.12 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CC
Q 024759 92 VTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRL-GF 170 (263)
Q Consensus 92 v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~-G~ 170 (263)
...||..+.+.++....+...+++|++++-..+. + ......+..|+++++++ |.
T Consensus 70 a~~qA~~f~~~~~~~~~~~~~~~lDvE~~~~~~~--------------~-----------~~~~~~~~~f~~~v~~~~g~ 124 (194)
T cd06524 70 PKQQADNFLNTVKLLGPGDLPPVLDVEWDGRKSS--------------A-----------KQIQEGVLEWLDAVEKATGV 124 (194)
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCCC--------------H-----------HHHHHHHHHHHHHHHHHHCC
Confidence 4578887777776522223345699998532210 0 01125677888988865 88
Q ss_pred EEEEEcCCC
Q 024759 171 KIVLLTGRM 179 (263)
Q Consensus 171 ~I~~iTgR~ 179 (263)
++.+-|++.
T Consensus 125 ~~~iY~~~~ 133 (194)
T cd06524 125 KPIIYTNPS 133 (194)
T ss_pred CeEEEEcHH
Confidence 888888875
No 331
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.21 E-value=5.5e+02 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCC-CEEEEEcCCCcccHHHHHHHHHHcCCC
Q 024759 156 PESLKLYRRLLRLG-FKIVLLTGRMEPSRNFTESNLKNVGYH 196 (263)
Q Consensus 156 p~~l~l~~~l~~~G-~~I~~iTgR~e~~r~~T~~nL~~~G~~ 196 (263)
....++++.+.+.+ .+=+.+..|++...+...+.|+++|..
T Consensus 88 ~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~ 129 (313)
T TIGR01210 88 ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVN 129 (313)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCC
Confidence 34467777887776 555667779988877788889999975
No 332
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.15 E-value=1.7e+02 Score=26.35 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHCCC-EEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 151 ISPALPESLKLYRRLLRLGF-KIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~-~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
..|+.-.+..+++.|++.|+ +|.++|-=.+..-+.-.++|.++||..
T Consensus 101 g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV 148 (239)
T TIGR02990 101 GTPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEI 148 (239)
T ss_pred CCCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEE
Confidence 46888999999999999997 788999988877788889999999975
No 333
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=24.09 E-value=2.7e+02 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=21.2
Q ss_pred HHHHHHHHHH----HHCCCEEEEEcCCCcccHH
Q 024759 156 PESLKLYRRL----LRLGFKIVLLTGRMEPSRN 184 (263)
Q Consensus 156 p~~l~l~~~l----~~~G~~I~~iTgR~e~~r~ 184 (263)
.+++++++.+ ++++-.+++|.+|-.....
T Consensus 187 ~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~ 219 (315)
T TIGR01370 187 AEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR 219 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh
Confidence 4455666555 9999999999999865543
No 334
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=24.07 E-value=78 Score=24.12 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=40.3
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESN 189 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~n 189 (263)
...+|+|+.+.-- . ...++....++.+.++.+|.+++|..-++ ...+-
T Consensus 48 ~~~vIlD~s~v~~-----i----------------------Dssgi~~L~~~~~~~~~~g~~~~l~~~~~-----~v~~~ 95 (117)
T PF01740_consen 48 IKNVILDMSGVSF-----I----------------------DSSGIQALVDIIKELRRRGVQLVLVGLNP-----DVRRI 95 (117)
T ss_dssp SSEEEEEETTESE-----E----------------------SHHHHHHHHHHHHHHHHTTCEEEEESHHH-----HHHHH
T ss_pred ceEEEEEEEeCCc-----C----------------------CHHHHHHHHHHHHHHHHCCCEEEEEECCH-----HHHHH
Confidence 5799999988521 1 12445667888999999999999887754 34455
Q ss_pred HHHcCCCC
Q 024759 190 LKNVGYHS 197 (263)
Q Consensus 190 L~~~G~~~ 197 (263)
|...|+..
T Consensus 96 l~~~~~~~ 103 (117)
T PF01740_consen 96 LERSGLID 103 (117)
T ss_dssp HHHTTGHH
T ss_pred HHHcCCCh
Confidence 88888764
No 335
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=24.03 E-value=2.2e+02 Score=25.81 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=13.2
Q ss_pred CCCcEEEEecCCcccc
Q 024759 108 DGKDIWILDVDDSLIT 123 (263)
Q Consensus 108 ~g~~avVfDIDeTll~ 123 (263)
...+.+|+|||+..+.
T Consensus 39 ~~~~iviV~ID~~Sl~ 54 (310)
T PF05226_consen 39 ADPDIVIVDIDDESLA 54 (310)
T ss_pred CCCCEEEEEECHHHHH
Confidence 3678999999998775
No 336
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.94 E-value=99 Score=27.89 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.-.+.+++..+.++++|.+|+.||+.....
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSP 222 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 455889999999999999999999987543
No 337
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.91 E-value=1.6e+02 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCC--CEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 157 ESLKLYRRLLRLG--FKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 157 ~~l~l~~~l~~~G--~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
-++.++..+.++| ++|+..=+|+..+-..|.+.|.++|++.
T Consensus 132 tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~v 174 (310)
T PRK08535 132 AALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPV 174 (310)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCE
Confidence 3455666665554 6777777787666566788888888774
No 338
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=23.65 E-value=79 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCC--CcccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGR--MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR--~e~~r~~T~~nL~~~G~~~ 197 (263)
-+.-+-+++++|+++|+++.+||=- -.+.+.+..+++.+|-.+.
T Consensus 183 GLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~mH~ 228 (344)
T TIGR00113 183 GLHFSEELLEKLKAKGVQYAFITLHVGAGTFRPVEADNIEDHVMHA 228 (344)
T ss_pred ccCCCHHHHHHHHHCCCeEEEEEEeecCCCCcCccccccccCCccc
Confidence 4455779999999999999999854 2344556667777776654
No 339
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.61 E-value=60 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 147 LAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 147 v~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
++-+.+|-.+--..++.++.++|++| +||.|+ +....+-|+..||+.
T Consensus 5 iDI~n~~hvhfFk~lI~elekkG~ev-~iT~rd---~~~v~~LLd~ygf~~ 51 (346)
T COG1817 5 IDIGNPPHVHFFKNLIWELEKKGHEV-LITCRD---FGVVTELLDLYGFPY 51 (346)
T ss_pred EEcCCcchhhHHHHHHHHHHhCCeEE-EEEEee---cCcHHHHHHHhCCCe
Confidence 33345566677788899999999965 567777 445567888999985
No 340
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.53 E-value=93 Score=27.82 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCccc
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRMEPS 182 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~e~~ 182 (263)
.-.+.+++..+.++++|.+|+.||+.+...
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 345788999999999999999999987544
No 341
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=68 Score=28.87 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Q 024759 142 ALINYLAQGISPALPESLKLYRR 164 (263)
Q Consensus 142 ~~~~wv~~~~~paip~~l~l~~~ 164 (263)
.|.+|...+....-..+.+++.+
T Consensus 153 ~f~ewka~aiGr~sk~VrEflEK 175 (249)
T KOG0183|consen 153 IFSEWKANAIGRSSKTVREFLEK 175 (249)
T ss_pred chhhhhccccccccHHHHHHHHH
Confidence 46677766555555666666655
No 342
>PRK02947 hypothetical protein; Provisional
Probab=23.44 E-value=1e+02 Score=27.60 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCc
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRME 180 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e 180 (263)
.+.++++++.++++|.+|+.||+...
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 37889999999999999999999874
No 343
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=23.40 E-value=78 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC--cccHHHHHHHHHHcCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRM--EPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~--e~~r~~T~~nL~~~G~~~ 197 (263)
-+.-+-++++.|+++|+++.+||=-- .+.+.+..+++.+|-.+.
T Consensus 182 GLHFt~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~edi~~H~mH~ 227 (342)
T PRK00147 182 GLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRVEDIEEHKMHS 227 (342)
T ss_pred ccCCCHHHHHHHHHCCCcEEEEEEeecCCCCcCcccCccccCCccc
Confidence 34457799999999999999998542 344556667777776654
No 344
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=23.35 E-value=2.2e+02 Score=19.51 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCEEEEEcCCCccc-HHHHHHHHHHcCCC
Q 024759 158 SLKLYRRLLRLGFKIVLLTGRMEPS-RNFTESNLKNVGYH 196 (263)
Q Consensus 158 ~l~l~~~l~~~G~~I~~iTgR~e~~-r~~T~~nL~~~G~~ 196 (263)
..++++.++++|++.+.+|....-. .....+..++.|++
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 4688999999999999999987322 22333444455554
No 345
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.29 E-value=4.6e+02 Score=22.13 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHH--HHHHHHhcCCeEEE
Q 024759 157 ESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSA--ERRKLVESGYRIIG 234 (263)
Q Consensus 157 ~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~--~R~~l~~~Gy~Iv~ 234 (263)
...+.++.+.+.++.-+++++-... ....+.|++.|+|.. ++-+.......-....++.. .-+.+.++||+-++
T Consensus 43 ~~~~~i~~l~~~~~dgii~~~~~~~--~~~~~~~~~~~ipvv--~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~ 118 (259)
T cd01542 43 KEIEALELLARQKVDGIILLATTIT--DEHREAIKKLNVPVV--VVGQDYPGISSVVYDDYGAGYELGEYLAQQGHKNIA 118 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCC--HHHHHHHhcCCCCEE--EEeccCCCCCEEEECcHHHHHHHHHHHHHcCCCcEE
Confidence 3457777888888877777654322 245577777787751 11111111010111112222 12345568899889
Q ss_pred EeCCCccc
Q 024759 235 NMGDQWCD 242 (263)
Q Consensus 235 ~iGDq~sD 242 (263)
++|.+..+
T Consensus 119 ~v~~~~~~ 126 (259)
T cd01542 119 YLGVSESD 126 (259)
T ss_pred EEcCCccc
Confidence 98765433
No 346
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.26 E-value=1.4e+02 Score=27.26 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 156 PESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
..++.|...+..+|..|+||+.|.....-+-..--+..||..
T Consensus 95 r~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 95 RRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee
Confidence 567888988999999899998887666555555566667764
No 347
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.19 E-value=1.4e+02 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHH-HCCCEEEEEcCCCcccHHHHHHHHHHcCCC
Q 024759 154 ALPESLKLYRRLL-RLGFKIVLLTGRMEPSRNFTESNLKNVGYH 196 (263)
Q Consensus 154 aip~~l~l~~~l~-~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~ 196 (263)
.+|...++++++. ..+++|++||-- ..++...+.+++.+++
T Consensus 19 ~~~~l~~l~~~~~~~~~v~~v~Vs~d--~~~~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 19 ELPKLKELYKKYKKKDDVEFVFVSLD--EDEEEWKKFLKKNNFP 60 (95)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEE-S--SSHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEeC--CCHHHHHHHHHhcCCC
Confidence 4577788888887 678999999984 4466788889888775
No 348
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.14 E-value=4.9e+02 Score=24.05 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCE-EEEEcCCCcccH-----HHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcC
Q 024759 156 PESLKLYRRLLRLGFK-IVLLTGRMEPSR-----NFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESG 229 (263)
Q Consensus 156 p~~l~l~~~l~~~G~~-I~~iTgR~e~~r-----~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~G 229 (263)
.++..+.++|.++|++ |.|+++..+... +.-.+-|+++|++.-..++...+-. ....++...+..-....
T Consensus 161 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~----~~~g~~~~~~ll~~~~~ 236 (333)
T COG1609 161 AGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFS----EESGYEAAERLLARGEP 236 (333)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCC----hHHHHHHHHHHHhcCCC
Q ss_pred -CeEEEEeCCCc
Q 024759 230 -YRIIGNMGDQW 240 (263)
Q Consensus 230 -y~Iv~~iGDq~ 240 (263)
-.-+....|.+
T Consensus 237 ~ptAif~~nD~~ 248 (333)
T COG1609 237 RPTAIFCANDLM 248 (333)
T ss_pred CCcEEEEcCcHH
No 349
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.13 E-value=6.5e+02 Score=24.84 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=24.5
Q ss_pred cccchHHHHhhhccccch-hhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccC
Q 024759 69 PKVCQHYVADYMLSDQFL-QDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITH 124 (263)
Q Consensus 69 P~~C~~~v~~Y~~~~qY~-~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n 124 (263)
|-.|. |.......++|+ ++.+.|+++.....+.. |...+.| .|++...|
T Consensus 204 p~~C~-FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~-----gv~~~~~-~Dd~f~~~ 253 (497)
T TIGR02026 204 PFTCN-FCSQWKFWRRYRHRDPKKFVDEIEWLVRTH-----GVGFFIL-ADEEPTIN 253 (497)
T ss_pred CCCCC-CCCCCCCCceeecCCHHHHHHHHHHHHHHc-----CCCEEEE-EecccccC
Confidence 55663 433222223443 57788888876655422 2333433 66654433
No 350
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=23.09 E-value=1.8e+02 Score=30.66 Aligned_cols=88 Identities=27% Similarity=0.343 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC--c-------------------ceeeeecCCCCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS--W-------------------EKLILRETGEWN 210 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~--~-------------------~~Lilr~~~~~~ 210 (263)
+||-..+-+-++.....|+.|=.+||-.-.--..|-+.| |... | +.|+-+.++. .
T Consensus 491 dpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrl---gmgtnmypss~llG~~~~~~~~~~~v~elie~adgf-A 566 (942)
T KOG0205|consen 491 DPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRL---GMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGF-A 566 (942)
T ss_pred CCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhh---ccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCc-c
Confidence 466677888899999999999999996533333343333 3221 1 1222222222 1
Q ss_pred CcchhhhhHHHHHHHHhcCCeEEEEeCCCccccCC
Q 024759 211 DTTQRAHKSAERRKLVESGYRIIGNMGDQWCDLLG 245 (263)
Q Consensus 211 ~~~~~~yKs~~R~~l~~~Gy~Iv~~iGDq~sDl~G 245 (263)
+. ..+-|.+.-+.|+.+|| |+++.||-.+|-..
T Consensus 567 gV-fpehKy~iV~~Lq~r~h-i~gmtgdgvndapa 599 (942)
T KOG0205|consen 567 GV-FPEHKYEIVKILQERKH-IVGMTGDGVNDAPA 599 (942)
T ss_pred cc-CHHHHHHHHHHHhhcCc-eecccCCCcccchh
Confidence 10 12457788888888887 99999999998753
No 351
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.99 E-value=5.5e+02 Score=22.99 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCE---EEEEcCCC----cccHHHHHHHHHHcCCC-CcceeeeecCCCCCCcchhhhhHHHH
Q 024759 151 ISPALPESLKLYRRLLRLGFK---IVLLTGRM----EPSRNFTESNLKNVGYH-SWEKLILRETGEWNDTTQRAHKSAER 222 (263)
Q Consensus 151 ~~paip~~l~l~~~l~~~G~~---I~~iTgR~----e~~r~~T~~nL~~~G~~-~~~~Lilr~~~~~~~~~~~~yKs~~R 222 (263)
.-...|..+++++.+++.|-+ +-++|.=- ..+-.+-.+.++++|++ .|-|+++-+-+. .++++..|=+...
T Consensus 9 ~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt-~P~S~~~yl~~l~ 87 (223)
T PF06415_consen 9 SFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT-PPKSALKYLEELE 87 (223)
T ss_dssp GGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS--TTTHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC-CcchHHHHHHHHH
Confidence 334457777888888877633 33666542 34556777888888987 356778766554 5666777777777
Q ss_pred HHHHhcCC-eEEEEeC
Q 024759 223 RKLVESGY-RIIGNMG 237 (263)
Q Consensus 223 ~~l~~~Gy-~Iv~~iG 237 (263)
..+.+.|. +|.-++|
T Consensus 88 ~~l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 88 EKLAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHHHTCTEEEEEEE
T ss_pred HHHHhhCCceEEEEec
Confidence 77776655 5555555
No 352
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=22.94 E-value=80 Score=29.35 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=25.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHcCCCCcc
Q 024759 171 KIVLLTGRMEPSRNFTESNLKNVGYHSWE 199 (263)
Q Consensus 171 ~I~~iTgR~e~~r~~T~~nL~~~G~~~~~ 199 (263)
++++|||++..-+.+..+-|+..||-.-|
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDlGyycvD 30 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDLGYYCVD 30 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhcCeeeec
Confidence 58999999999999999999999996533
No 353
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.88 E-value=2.7e+02 Score=19.31 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=17.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 172 IVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 172 I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
|.+.|......-..+.++|.++|++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~ 28 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPY 28 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCce
Confidence 44455554445557789999999984
No 354
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.87 E-value=2.2e+02 Score=24.16 Aligned_cols=14 Identities=29% Similarity=0.041 Sum_probs=12.2
Q ss_pred EEEEeCCCccccCC
Q 024759 232 IIGNMGDQWCDLLG 245 (263)
Q Consensus 232 Iv~~iGDq~sDl~G 245 (263)
-++.|||..+|+.=
T Consensus 197 ~vi~~GD~~NDi~m 210 (221)
T TIGR02463 197 KTLGLGDGPNDLPL 210 (221)
T ss_pred cEEEECCCHHHHHH
Confidence 58899999999973
No 355
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.78 E-value=1.1e+02 Score=25.84 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHCCCEEEEEcCC-CcccHHHHHHHHHHcCCCC
Q 024759 161 LYRRLLRLGFKIVLLTGR-MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 161 l~~~l~~~G~~I~~iTgR-~e~~r~~T~~nL~~~G~~~ 197 (263)
|-..|+++|+..++++|- ++.+...|......+||..
T Consensus 124 L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v 161 (205)
T COG1335 124 LDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQV 161 (205)
T ss_pred HHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeE
Confidence 445778899999999996 5678999999999999964
No 356
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=22.77 E-value=1.1e+02 Score=25.49 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=33.6
Q ss_pred EEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 112 IWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 112 avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
..++|+||.++.-.. .-....-+.++.+.+.|..|++-|.-.+. ..|++-|.
T Consensus 45 iAildL~G~~l~l~S--------------------------~R~~~~~evi~~I~~~G~PviVAtDV~p~--P~~V~Kia 96 (138)
T PF04312_consen 45 IAILDLDGELLDLKS--------------------------SRNMSRSEVIEWISEYGKPVIVATDVSPP--PETVKKIA 96 (138)
T ss_pred EEEEecCCcEEEEEe--------------------------ecCCCHHHHHHHHHHcCCEEEEEecCCCC--cHHHHHHH
Confidence 567999999997411 01122345666777888888888886543 34555554
Q ss_pred H
Q 024759 192 N 192 (263)
Q Consensus 192 ~ 192 (263)
.
T Consensus 97 ~ 97 (138)
T PF04312_consen 97 R 97 (138)
T ss_pred H
Confidence 4
No 357
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.51 E-value=1.9e+02 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGR 178 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR 178 (263)
.|...+++++|+++|++++++..-
T Consensus 70 FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 70 YPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEecC
Confidence 456678999999999999876653
No 358
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.44 E-value=2.9e+02 Score=19.60 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=9.5
Q ss_pred HhcCCeEEEEeCCC
Q 024759 226 VESGYRIIGNMGDQ 239 (263)
Q Consensus 226 ~~~Gy~Iv~~iGDq 239 (263)
.+.|++++..+|+.
T Consensus 48 ~~~g~~~~iiig~~ 61 (91)
T cd00860 48 QLQKIPYILVVGDK 61 (91)
T ss_pred HHcCCCEEEEECcc
Confidence 45677777777754
No 359
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.43 E-value=5.4e+02 Score=22.94 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCC-E-EEEEcCCCcc-----cHHHHHHHHHHcCCCCcceeeeecC
Q 024759 156 PESLKLYRRLLRLGF-K-IVLLTGRMEP-----SRNFTESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 156 p~~l~l~~~l~~~G~-~-I~~iTgR~e~-----~r~~T~~nL~~~G~~~~~~Lilr~~ 206 (263)
.++.+..++|.++|+ + |.++++.... .++.-.+-|+++|++.-+.++...+
T Consensus 104 ~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~ 161 (279)
T PF00532_consen 104 EAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGD 161 (279)
T ss_dssp HHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESS
T ss_pred HHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccC
Confidence 456788899999998 6 8999997542 2345678899999976455666554
No 360
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=22.24 E-value=77 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH
Q 024759 142 ALINYLAQGISPALPESLKLYRRLLR 167 (263)
Q Consensus 142 ~~~~wv~~~~~paip~~l~l~~~l~~ 167 (263)
.|++|+.-+.-|....+.+.++.+..
T Consensus 19 dWd~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 19 DWDKWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred chHHheeeCCeeCCHHHHHHHHHHHh
Confidence 59999999888888888888877654
No 361
>PRK12743 oxidoreductase; Provisional
Probab=22.16 E-value=1.6e+02 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcc
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
..+.+.|.++|++|+++..|+..
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~~~ 38 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSDEE 38 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCChH
Confidence 45667777778877776555543
No 362
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=21.82 E-value=52 Score=33.17 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=18.1
Q ss_pred CcEEEEecCCcccc---CchhhhhcCCC
Q 024759 110 KDIWILDVDDSLIT---HVDFYAQNGFG 134 (263)
Q Consensus 110 ~~avVfDIDeTll~---n~~y~~~~~~g 134 (263)
...+++|+|||||- ..||+.-..+.
T Consensus 50 ~~t~v~d~~g~Ll~s~s~FpyfmlvA~E 77 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFPYFMVVAFE 77 (525)
T ss_pred cceEEEecccceeccCCCCcceeeeeec
Confidence 44799999999993 56787544443
No 363
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=21.79 E-value=1.1e+02 Score=26.97 Aligned_cols=26 Identities=38% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
-.+.+++.++.++++|.+|+-||+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~ 84 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSP 84 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 45889999999999999999999974
No 364
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.78 E-value=3.9e+02 Score=24.78 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCEEE------------EEcCCCcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHh
Q 024759 160 KLYRRLLRLGFKIV------------LLTGRMEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVE 227 (263)
Q Consensus 160 ~l~~~l~~~G~~I~------------~iTgR~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~ 227 (263)
...++|.++|++++ -+==|...--..+.+.|++.|+...| ..+|-+.-=...-+++.+
T Consensus 45 ~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viD----------aTCP~V~k~~~~v~~~~~ 114 (281)
T PRK12360 45 QVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIID----------ATCPFVKKIQNIVEEYYN 114 (281)
T ss_pred HHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe----------CCCccchHHHHHHHHHHh
Q ss_pred cCCeEEEEeCCC
Q 024759 228 SGYRIIGNMGDQ 239 (263)
Q Consensus 228 ~Gy~Iv~~iGDq 239 (263)
+||.|+ .+||.
T Consensus 115 ~Gy~iv-iiG~~ 125 (281)
T PRK12360 115 KGYSII-IVGDK 125 (281)
T ss_pred CCCEEE-EEcCC
No 365
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=21.75 E-value=3.4e+02 Score=26.08 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCccc-----HHHHHHHHHHcCCCC--cceeeeecCCCCCCcchhhhhHHHHHHHHhcCCe----EEEEeC
Q 024759 169 GFKIVLLTGRMEPS-----RNFTESNLKNVGYHS--WEKLILRETGEWNDTTQRAHKSAERRKLVESGYR----IIGNMG 237 (263)
Q Consensus 169 G~~I~~iTgR~e~~-----r~~T~~nL~~~G~~~--~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~----Iv~~iG 237 (263)
+-++++||++.-.. .+...+.|+++|+.. +...+.-++++ ..++....-....+.+.+.|.. |++.=|
T Consensus 30 ~~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge-~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGE-ACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCc-cCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 46899999985432 366677888889532 22344444554 4444322223344555555553 555555
Q ss_pred CCccccCCC-----CccceEEEcCC
Q 024759 238 DQWCDLLGD-----YPGHRTFKLPN 257 (263)
Q Consensus 238 Dq~sDl~G~-----~~g~r~fkLPN 257 (263)
=...|+.|. .+|.+++.+|-
T Consensus 109 G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 109 GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 666888763 45677777774
No 366
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=7.5e+02 Score=24.06 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=56.8
Q ss_pred CCCCcEEEEecCCccccCchhhhhcCCCccc------CChHHHHHHHHcCC--------CCCCHHHHHHHHHHHHCCCEE
Q 024759 107 GDGKDIWILDVDDSLITHVDFYAQNGFGTEI------FDVTALINYLAQGI--------SPALPESLKLYRRLLRLGFKI 172 (263)
Q Consensus 107 ~~g~~avVfDIDeTll~n~~y~~~~~~g~~~------y~~~~~~~wv~~~~--------~paip~~l~l~~~l~~~G~~I 172 (263)
..+.....+=+.|=-++ ....|..+ -+++..++|...+. +|-.++..++++.|.++|+.+
T Consensus 116 ~~ga~ilGiHLEGP~ls------~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE~~~~~e~i~~l~~~giiv 189 (380)
T COG1820 116 KGGAQILGIHLEGPFLS------PEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLAPELDGTKELIRLLANAGIVV 189 (380)
T ss_pred ccCCceEEEEeecCccC------HhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEECCCCCCCHHHHHHHHhCCeEE
Confidence 35666778888885443 22233332 35678888887754 688888999999999999744
Q ss_pred EEEcCCCcccHHHHHHHHHHcCCCCcceee
Q 024759 173 VLLTGRMEPSRNFTESNLKNVGYHSWEKLI 202 (263)
Q Consensus 173 ~~iTgR~e~~r~~T~~nL~~~G~~~~~~Li 202 (263)
-+ |-+....+.+.+.+ ++|...+.||+
T Consensus 190 s~--GHS~Atye~~~~a~-~~Ga~~~THlf 216 (380)
T COG1820 190 SI--GHSNATYEQARAAF-EAGATFVTHLF 216 (380)
T ss_pred Ee--cCccccHHHHHHHH-HhCccEEEeec
Confidence 33 44544455555555 44877766664
No 367
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.66 E-value=1.7e+02 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcc
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEP 181 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~ 181 (263)
..+.+.|.++|+.|++++.|++.
T Consensus 19 ~~l~~~l~~~G~~v~~~~~~~~~ 41 (248)
T PRK05557 19 RAIAERLAAQGANVVINYASSEA 41 (248)
T ss_pred HHHHHHHHHCCCEEEEEeCCchh
Confidence 45667777778888777766543
No 368
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=21.22 E-value=2e+02 Score=24.42 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHH-CC
Q 024759 91 VVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLR-LG 169 (263)
Q Consensus 91 ~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~-~G 169 (263)
....||..+.+.++... +...+++|+++.-.+. . .....+.+|++.+++ .|
T Consensus 62 ~a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~~----------------~-----------~~~~~~~~f~~~v~~~~G 113 (195)
T cd06417 62 NAIAEADYFLNNIKGYV-GKAVLVLDWESYQNSA----------------W-----------GNSAWARQWVNRVHELTG 113 (195)
T ss_pred CHHHHHHHHHHHhcccc-CCCcEEEEeeCCCCCc----------------h-----------HHHHHHHHHHHHHHHHHC
Confidence 46788888887776432 3346789999852210 0 112446788888875 68
Q ss_pred CEEEEEcCCC
Q 024759 170 FKIVLLTGRM 179 (263)
Q Consensus 170 ~~I~~iTgR~ 179 (263)
.++++=|++.
T Consensus 114 ~~~~iY~~~~ 123 (195)
T cd06417 114 VWPMVYVSKS 123 (195)
T ss_pred CCcEEEecHH
Confidence 8888888865
No 369
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=21.22 E-value=1.3e+02 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 153 PALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 153 paip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
|.-..+..++.+++++|++|++++-++
T Consensus 15 ~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 15 PYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 444678999999999999999987664
No 370
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=21.19 E-value=1.4e+02 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=28.5
Q ss_pred ChHHHHHHHHcCC-CCCCHHHHHHHHHHHHCCCEEEEEcCCC
Q 024759 139 DVTALINYLAQGI-SPALPESLKLYRRLLRLGFKIVLLTGRM 179 (263)
Q Consensus 139 ~~~~~~~wv~~~~-~paip~~l~l~~~l~~~G~~I~~iTgR~ 179 (263)
+|.+|+.=...|. ..-...+++.++.++++|++.++||.=.
T Consensus 149 TPNqFE~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~ 190 (308)
T KOG2599|consen 149 TPNQFEAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFD 190 (308)
T ss_pred CCcchhhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeee
Confidence 3445554444443 3556778899999999999888888754
No 371
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=21.15 E-value=5.8e+02 Score=22.59 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcC------CCc----------ccHHHH------------HHHHHHcCCCCcceeeeecC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTG------RME----------PSRNFT------------ESNLKNVGYHSWEKLILRET 206 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTg------R~e----------~~r~~T------------~~nL~~~G~~~~~~Lilr~~ 206 (263)
+..+.+.+.+++++|++++++++ +.. ..+++. ..-|.++|++. .++++...
T Consensus 23 i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~-~q~l~t~~ 101 (251)
T cd04242 23 LASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKV-AQILLTRD 101 (251)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeE-EEEEEehh
Confidence 44455777788889999999964 210 111111 15677889986 34555444
Q ss_pred CCCCCcchhhhh--HHHHHHHHhcCCeEEEEeCCCccc
Q 024759 207 GEWNDTTQRAHK--SAERRKLVESGYRIIGNMGDQWCD 242 (263)
Q Consensus 207 ~~~~~~~~~~yK--s~~R~~l~~~Gy~Iv~~iGDq~sD 242 (263)
+. .. ...+. ....+.+.+.|+-.|.+=+|..++
T Consensus 102 ~~-~~--~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~ 136 (251)
T cd04242 102 DF-ED--RKRYLNARNTLETLLELGVIPIINENDTVAT 136 (251)
T ss_pred Hh-cc--hHHHHHHHHHHHHHHHCCCEEEEcCCCCeee
Confidence 32 11 11121 122334455788766664455543
No 372
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=21.10 E-value=3.9e+02 Score=23.15 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCEEEEEcCC-CcccHHHHHHHHHHcCCCCcceeeeecCCCCCCcchhhhhHHHHHHHHhcCCeEE
Q 024759 160 KLYRRLLRLGFKIVLLTGR-MEPSRNFTESNLKNVGYHSWEKLILRETGEWNDTTQRAHKSAERRKLVESGYRII 233 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR-~e~~r~~T~~nL~~~G~~~~~~Lilr~~~~~~~~~~~~yKs~~R~~l~~~Gy~Iv 233 (263)
+|-+.|+++|++-++|+|= .+.+-..|...+...||.. .++.+.-. .. ...........++..|=.|+
T Consensus 136 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v---~vv~Da~~--~~-~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 136 GLAQILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKV---VVLEDATR--AV-DPDAISKQRAELLEAGVILL 204 (212)
T ss_pred hHHHHHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEE---EEeCcCcc--CC-CHHHHHHHHHHHHHCCCEEE
Confidence 3556788899999999996 4677889999999999864 34433221 11 22233444555666665443
No 373
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=21.06 E-value=1.4e+02 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 155 LPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 155 ip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
+-+.+.+-+.|+++|++|.|+|... -.+.++.+|+..
T Consensus 9 v~P~l~lA~~L~~~Gh~V~~~~~~~------~~~~v~~~G~~~ 45 (392)
T TIGR01426 9 VNPTLGVVEELVARGHRVTYATTEE------FAERVEAAGAEF 45 (392)
T ss_pred ccccHHHHHHHHhCCCeEEEEeCHH------HHHHHHHcCCEE
Confidence 4557888899999999999999933 235566778753
No 374
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=21.04 E-value=4.1e+02 Score=21.55 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCEEEEEcCC-CcccHHHHHHHHHHcCCCC
Q 024759 160 KLYRRLLRLGFKIVLLTGR-MEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 160 ~l~~~l~~~G~~I~~iTgR-~e~~r~~T~~nL~~~G~~~ 197 (263)
+|-..|+++|++-++|+|= ++.+...|..-+...||..
T Consensus 78 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v 116 (157)
T cd01012 78 AFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEV 116 (157)
T ss_pred HHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEE
Confidence 4556788899998899995 5678899999999999864
No 375
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=21.03 E-value=2e+02 Score=24.53 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcC
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVG 194 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G 194 (263)
..+.+.|.++|.+|+++.+|.+..+....+.++..|
T Consensus 17 ~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~ 52 (246)
T PRK12938 17 TSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALG 52 (246)
T ss_pred HHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcC
Confidence 455677777888877766665544444445554444
No 376
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.84 E-value=1e+02 Score=23.93 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=27.6
Q ss_pred ccchHHHHhhhccccchhhHHHHHHHHHHHHHh
Q 024759 70 KVCQHYVADYMLSDQFLQDSKVVTEEAFKYAKT 102 (263)
Q Consensus 70 ~~C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~ 102 (263)
.+=+..++.-++.|.|..|.+.|++--+.|+++
T Consensus 60 ~~kVeeiK~aI~~G~ykvD~~kiAd~ll~f~~~ 92 (93)
T COG2747 60 EEKVEELKQAIENGEYKVDTEKIADKLLDFAKQ 92 (93)
T ss_pred HHHHHHHHHHHHcCCeeecHHHHHHHHHHHHhc
Confidence 334567888899999999999999999998864
No 377
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=20.79 E-value=2e+02 Score=23.22 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC-----cccHHHHHHHHHH-cCCCC
Q 024759 154 ALPESLKLYRRLLRLGFKIVLLTGRM-----EPSRNFTESNLKN-VGYHS 197 (263)
Q Consensus 154 aip~~l~l~~~l~~~G~~I~~iTgR~-----e~~r~~T~~nL~~-~G~~~ 197 (263)
-+|...+++++..++|+.|+-|+... ....+...+++++ .|++.
T Consensus 39 e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~f 88 (152)
T cd00340 39 QYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTF 88 (152)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCc
Confidence 45777888899988999999987432 1234556678876 68764
No 378
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.75 E-value=1.8e+02 Score=24.38 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHH
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLK 191 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~ 191 (263)
..+.+.|.++|+.|++++.|.+...+...+.+.
T Consensus 20 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~ 52 (249)
T PRK12825 20 RAIALRLARAGADVVVHYRSDEEAAEELVEAVE 52 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH
Confidence 456677788888887777776544333333333
No 379
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.72 E-value=97 Score=28.86 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.8
Q ss_pred CEEEEEcCCCcccHHHHHHHHHHcCCCCc
Q 024759 170 FKIVLLTGRMEPSRNFTESNLKNVGYHSW 198 (263)
Q Consensus 170 ~~I~~iTgR~e~~r~~T~~nL~~~G~~~~ 198 (263)
.++++|||.+..-+....+-|+..||-.-
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED~Gy~cv 29 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALEDLGYYCV 29 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHhcCeeEE
Confidence 37999999999999999999999999753
No 380
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.71 E-value=3.3e+02 Score=24.00 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=43.0
Q ss_pred CcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCc-----ccHH
Q 024759 110 KDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRME-----PSRN 184 (263)
Q Consensus 110 ~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e-----~~r~ 184 (263)
-|.++..++.++.++....... -.| ..-| +.++.|...|+.++=+.|... .-..
T Consensus 37 aD~~~~NlE~~v~~~~~~~~~~----~~f--------------~~~~---~~~~~L~~~G~d~vslANNH~~D~G~~gl~ 95 (250)
T PF09587_consen 37 ADLVVANLETPVTDSGQPASGY----PHF--------------NAPP---EILDALKDAGFDVVSLANNHIFDYGEEGLL 95 (250)
T ss_pred CCEEEEEeeecCcCCCCcCCCc----cee--------------cCCH---HHHHHHHHcCCCEEEecCCCCccccHHHHH
Confidence 4688999998887653221110 001 1113 346677788999998886642 2346
Q ss_pred HHHHHHHHcCCCC
Q 024759 185 FTESNLKNVGYHS 197 (263)
Q Consensus 185 ~T~~nL~~~G~~~ 197 (263)
.|.+.|+++|+..
T Consensus 96 ~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 96 DTLEALDKAGIPY 108 (250)
T ss_pred HHHHHHHHCCCcE
Confidence 7999999999875
No 381
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=20.57 E-value=2.3e+02 Score=26.10 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=56.6
Q ss_pred chHHHHhhhccccchhhHHHHHHHHHHHHHhhcccCCCCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCC
Q 024759 72 CQHYVADYMLSDQFLQDSKVVTEEAFKYAKTVKLAGDGKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGI 151 (263)
Q Consensus 72 C~~~v~~Y~~~~qY~~D~~~v~~~A~~ya~~~~~~~~g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~ 151 (263)
|+-.+.+|.+.+.|.+.++....|+.+-. .++.||..----+|+..| .|...-+|
T Consensus 219 ~kVEl~~gTeddeYLrkl~r~l~~sl~ef--------~Pd~VvYNAGTDiLeGDp------LG~L~ISp----------- 273 (324)
T KOG1344|consen 219 CKVELRNGTEDDEYLRKLKRCLMQSLAEF--------RPDMVVYNAGTDILEGDP------LGNLAISP----------- 273 (324)
T ss_pred heeeeecCCCchHHHHHHHHHHHHHHHhh--------CCcEEEEeCCCccccCCC------CCCeeecc-----------
Confidence 44456677788899888887777765332 345555543222333221 12111111
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCC-----CcccHHHHHHHHHHcCC
Q 024759 152 SPALPESLKLYRRLLRLGFKIVLLTGR-----MEPSRNFTESNLKNVGY 195 (263)
Q Consensus 152 ~paip~~l~l~~~l~~~G~~I~~iTgR-----~e~~r~~T~~nL~~~G~ 195 (263)
+-.+..--..++..+++|+.|+.+|.- +...-.....||..+|.
T Consensus 274 ~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 274 EGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred cccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 112223334678889999999877764 23334667788888885
No 382
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=20.56 E-value=39 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=15.0
Q ss_pred EEEeCCC-ccccCCCC-ccceEE
Q 024759 233 IGNMGDQ-WCDLLGDY-PGHRTF 253 (263)
Q Consensus 233 v~~iGDq-~sDl~G~~-~g~r~f 253 (263)
+.+|||+ .+|+.+++ .|.+++
T Consensus 24 ~~~VGD~~~~Di~~a~~~G~~~i 46 (75)
T PF13242_consen 24 CVMVGDSLETDIEAAKAAGIDTI 46 (75)
T ss_dssp EEEEESSTTTHHHHHHHTTSEEE
T ss_pred EEEEcCCcHhHHHHHHHcCCcEE
Confidence 7799999 89998753 344443
No 383
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=20.33 E-value=3e+02 Score=20.57 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=39.3
Q ss_pred CCcEEEEecCCccccCchhhhhcCCCcccCChHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCcccHHHHHH
Q 024759 109 GKDIWILDVDDSLITHVDFYAQNGFGTEIFDVTALINYLAQGISPALPESLKLYRRLLRLGFKIVLLTGRMEPSRNFTES 188 (263)
Q Consensus 109 g~~avVfDIDeTll~n~~y~~~~~~g~~~y~~~~~~~wv~~~~~paip~~l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~ 188 (263)
+.+.+|+|.-+.-.- +...+....++++.++.+|.++++.--++ ...+
T Consensus 40 ~~~~vvlDls~v~~i---------------------------Dssg~~~l~~~~~~~~~~g~~l~l~g~~~-----~v~~ 87 (109)
T cd07041 40 RARGVIIDLTGVPVI---------------------------DSAVARHLLRLARALRLLGARTILTGIRP-----EVAQ 87 (109)
T ss_pred CCCEEEEECCCCchh---------------------------cHHHHHHHHHHHHHHHHcCCeEEEEeCCH-----HHHH
Confidence 567899999875321 12344556778899999999888776554 3456
Q ss_pred HHHHcCCCC
Q 024759 189 NLKNVGYHS 197 (263)
Q Consensus 189 nL~~~G~~~ 197 (263)
.|+..|+..
T Consensus 88 ~l~~~gl~~ 96 (109)
T cd07041 88 TLVELGIDL 96 (109)
T ss_pred HHHHhCCCh
Confidence 788888753
No 384
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.29 E-value=1.7e+02 Score=25.18 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCEEEEEcCCCcccHHHHHHHHHHcC
Q 024759 159 LKLYRRLLRLGFKIVLLTGRMEPSRNFTESNLKNVG 194 (263)
Q Consensus 159 l~l~~~l~~~G~~I~~iTgR~e~~r~~T~~nL~~~G 194 (263)
..+.+.|.++|++|++ ++|++...+.+.+.++..|
T Consensus 24 ~~ia~~l~~~G~~V~~-~~r~~~~~~~~~~~i~~~~ 58 (255)
T PRK07523 24 YALAEGLAQAGAEVIL-NGRDPAKLAAAAESLKGQG 58 (255)
T ss_pred HHHHHHHHHcCCEEEE-EeCCHHHHHHHHHHHHhcC
Confidence 4566777888988764 5676655555566665543
No 385
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.23 E-value=2.2e+02 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCC--CEEEEEcCCCcccHHHHHHHHHHcCCCC
Q 024759 157 ESLKLYRRLLRLG--FKIVLLTGRMEPSRNFTESNLKNVGYHS 197 (263)
Q Consensus 157 ~~l~l~~~l~~~G--~~I~~iTgR~e~~r~~T~~nL~~~G~~~ 197 (263)
-++.++..+.++| ++|+..-.|+..+-....+.|.+.|++.
T Consensus 121 tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~v 163 (275)
T PRK08335 121 AVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEF 163 (275)
T ss_pred HHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCE
Confidence 3566667777666 5777777787766444577788888774
Done!