BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024760
MEDVLTEIPPPSRFFQEDLNNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLF
VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAER
SHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVD
YFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDFGLN
NGEDGYSWFSQNRNRPFDSELYT

High Scoring Gene Products

Symbol, full name Information P value
AT3G25545 protein from Arabidopsis thaliana 9.9e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024760
        (263 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006374 - symbol:AT3G25545 "AT3G25545" speci...   716  9.9e-71   1


>TAIR|locus:505006374 [details] [associations]
            symbol:AT3G25545 "AT3G25545" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
            EMBL:CP002686 GenomeReviews:BA000014_GR UniGene:At.287
            EMBL:AB025639 EMBL:AY058108 EMBL:AY090313 IPI:IPI00530196
            RefSeq:NP_566770.1 UniGene:At.22640 IntAct:Q9LSU9 PaxDb:Q9LSU9
            PRIDE:Q9LSU9 EnsemblPlants:AT3G25545.1 GeneID:822141
            KEGG:ath:AT3G25545 TAIR:At3g25545 eggNOG:NOG318674
            HOGENOM:HOG000090780 InParanoid:Q9LSU9 OMA:DNFAAPP PhylomeDB:Q9LSU9
            ProtClustDB:CLSN2688767 Genevestigator:Q9LSU9 Uniprot:Q9LSU9
        Length = 267

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 150/268 (55%), Positives = 192/268 (71%)

Query:     1 MEDVLTEIPPPSRFFQEDXXXXXXXXXXXXXXXXXXXXXKLDAPLRPTLLIVAISSPSLF 60
             MEDVLTE PPPSRFFQED                     K + PLRP+LLI+AISSPSL+
Sbjct:     1 MEDVLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLY 60

Query:    61 VFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGR--ILVVSVQCSVAA 118
             +FH L SKTL+GSLI+PE+PFSGN++EPSL DKSCNIY+++  D +   L+VSVQ  V+ 
Sbjct:    61 IFHSLPSKTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSADDKNLTLLVSVQLPVSP 120

Query:   119 ERSHAVAKVLIGEEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSL-LK 177
             ERS+ V+++LI ++IIPERV+ILDSIQ+RNFRG+L PDET A KLETSA +K      L 
Sbjct:   121 ERSNLVSRLLIAKDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKATTHTGLV 180

Query:   178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVSWPEFGGSAVPFIQSLLQKNVLPGMDF 237
             ++DYFPSGS++DGL A+LLSRCQLKNI+GTL +SWPEFG S + F  +LL+K ++P +D 
Sbjct:   181 NLDYFPSGSVIDGLSASLLSRCQLKNIRGTLVISWPEFGPSVIRFAGALLKK-IVPSLDV 239

Query:   238 GLNNG--EDGYSWFSQNRNRPFDSELYT 263
                N   E   S     ++   DS+LYT
Sbjct:   240 ASVNKDLEKNSSRTGLKKDTWLDSDLYT 267


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       242   0.00096  113 3  11 22  0.44    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.44u 0.08s 20.52t   Elapsed:  00:00:02
  Total cpu time:  20.44u 0.08s 20.52t   Elapsed:  00:00:02
  Start:  Fri May 10 23:35:25 2013   End:  Fri May 10 23:35:27 2013

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