BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024760
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYY|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
           700-816) Containing Linker Region
          Length = 121

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 81  FSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLI 140
             G+ +E  L+ K C +   N    + L  S+Q      RS  V     G+E  PE VLI
Sbjct: 1   MGGSGVE-GLSGKRCWLAVRNASLCQFLETSLQ------RSGIVVTTYEGQEPTPEDVLI 53

Query: 141 LDSIQNRNFRGK-----------LPPDETFAFKLETSAARKEGPSLLKDV 179
            D + ++ ++G+           +P ++     + + AA  E P+LL  +
Sbjct: 54  TDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI 103


>pdb|3TO8|A Chain A, Crystal Structure Of The Two C-Terminal Rrm Domains Of
           Heterogeneous Nuclear Ribonucleoprotein L (Hnrnp L)
          Length = 218

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 228 QKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDS 259
           Q  ++PG  +GL +G   Y  FS++RN  F +
Sbjct: 85  QPAIMPGQSYGLEDGSCSYKDFSESRNNRFST 116


>pdb|3TYT|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
           Ribonucleoprotein L (Hnrpl) From Mus Musculus At 1.60 A
           Resolution
          Length = 205

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 228 QKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDS 259
           Q  ++PG  +GL +G   Y  FS++RN  F +
Sbjct: 79  QPAIMPGQSYGLEDGSCSYKDFSESRNNRFST 110


>pdb|1XJT|A Chain A, Crystal Structure Of Active Form Of P1 Phage Endolysin Lyz
          Length = 191

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 136 ERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVD 189
           + +LI +   N++FRGK  PD   AF   TSAA   G + L+       G  V+
Sbjct: 83  KNILIAERCINQHFRGKDXPDN--AFSAXTSAAFNXGCNSLRTYYSKARGXRVE 134


>pdb|3S01|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
           Ribonucleoprotein L (Hnrpl) From Mus Musculus At 2.15 A
           Resolution
          Length = 212

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 228 QKNVLPGMDFGLNNGEDGYSWFSQNRNRPFDS 259
           Q  + PG  +GL +G   Y  FS++RN  F +
Sbjct: 79  QPAIXPGQSYGLEDGSCSYKDFSESRNNRFST 110


>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
           700-949) Containing Linker Region And Phosphoreceiver
           Domain
          Length = 254

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 81  FSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLI 140
             G+ +E  L+ K C +   N    + L  S+Q      RS  V     G+E  PE VLI
Sbjct: 1   MGGSGVE-GLSGKRCWLAVRNASLCQFLETSLQ------RSGIVVTTYEGQEPTPEDVLI 53

Query: 141 LDSIQNRNFRGK 152
            D + ++ ++G+
Sbjct: 54  TDEVVSKKWQGR 65


>pdb|1XJU|A Chain A, Crystal Structure Of Secreted Inactive Form Of P1 Phage
           Endolysin Lyz
 pdb|1XJU|B Chain B, Crystal Structure Of Secreted Inactive Form Of P1 Phage
           Endolysin Lyz
          Length = 163

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 138 VLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLK 177
           +LI +   N++FRGK  PD   AF   TSAA   G + L+
Sbjct: 57  ILIAERCINQHFRGKDMPDN--AFSAMTSAAFNMGCNSLR 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,471,099
Number of Sequences: 62578
Number of extensions: 291010
Number of successful extensions: 544
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 7
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)