BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024760
         (263 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54WB6|PSMG1_DICDI Proteasome assembly chaperone 1 OS=Dictyostelium discoideum
           GN=psmG1 PE=3 SV=1
          Length = 272

 Score = 36.6 bits (83), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 22/119 (18%)

Query: 95  CNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGEEIIPERVLILDSIQN-----RNF 149
           C +Y  + ++  ++ ++VQ  + +ER     ++++       +VL+LD I N     +N+
Sbjct: 103 CTVYR-HKIEKSMIFITVQYDLPSERCFGFTELVLNTFKNVSQVLVLDKILNTHYLSQNY 161

Query: 150 RGKLPPDETFAFKLETSAARKEGPSLLKDVDY----FPSGSMVDGLPAALLSRCQLKNI 204
              +PP             R    SL K+ DY      S ++++ L A+ L+ CQ+K I
Sbjct: 162 THPIPP-----------FTRAIFNSLFKN-DYSLTPLESSNIIENLSASFLTICQVKYI 208


>sp|Q05AX3|PSMG1_XENLA Proteasome assembly chaperone 1 OS=Xenopus laevis GN=psmg1 PE=2
           SV=1
          Length = 288

 Score = 35.4 bits (80), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)

Query: 94  SCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGE-EIIPERVLILDSIQNRNFRGK 152
           SC  Y  +  D  +L+    C VA ++     + + G  E    +V +L +     ++  
Sbjct: 120 SCTFYR-SITDPTVLLCQCNCHVAEDQLFQWCEKVFGSLEKSSLKVTVLSTCPVSEYKT- 177

Query: 153 LPPDETFAF------KLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNI 204
             P+ T++        L TS  R+E P  L         ++VDGLPAA+LS CQ+  I
Sbjct: 178 --PESTYSLPVPFLKALRTSEYREEVPCPL-----LEQPNIVDGLPAAVLSHCQVLGI 228


>sp|Q6GQC1|FAM3C_XENLA Protein FAM3C OS=Xenopus laevis GN=fam3c PE=2 SV=1
          Length = 229

 Score = 33.1 bits (74), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 152 KLPPDETFAFKLETSAARKEGPSLLKDVDYFPSG---SMVDGLPAALLSRCQLKNIKGTL 208
           K+ P++ FAFK+ + AA   GP +  D +   SG   ++  G+  AL++      I+ T 
Sbjct: 63  KVCPEKHFAFKIASGAANVVGPKICVDDNILMSGVKNNVGRGINTALVNGKTGALIETTY 122

Query: 209 CVSWPEFGGSAVPFIQSL 226
              W   GG   PFI+ L
Sbjct: 123 HDLW---GGEVGPFIEFL 137


>sp|B0BLS9|FAM3C_XENTR Protein FAM3C OS=Xenopus tropicalis GN=fam3c PE=2 SV=1
          Length = 229

 Score = 32.7 bits (73), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 152 KLPPDETFAFKLETSAARKEGPSLLKDVDYFPSG---SMVDGLPAALLSRCQLKNIKGTL 208
           K+ P++ FAFK+ + AA   GP +  D +   SG   ++  G+  AL++      I+ T 
Sbjct: 63  KVCPEKHFAFKIASGAANVVGPKICVDDNILMSGVKNNVGRGINTALVNGKTGALIETTY 122

Query: 209 CVSWPEFGGSAVPFIQSL 226
              W   GG   PFI+ L
Sbjct: 123 HDLW---GGEVGPFIEFL 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,475,938
Number of Sequences: 539616
Number of extensions: 4620539
Number of successful extensions: 10794
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10786
Number of HSP's gapped (non-prelim): 20
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)