Query 024760
Match_columns 263
No_of_seqs 40 out of 42
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1938 Archaeal enzymes of AT 97.9 1.9E-05 4.2E-10 72.7 6.0 174 46-231 15-204 (244)
2 TIGR00161 conserved hypothetic 97.4 0.0012 2.5E-08 59.8 10.0 147 44-210 13-173 (238)
3 PF09754 PAC2: PAC2 family; I 96.2 0.0051 1.1E-07 53.3 4.0 147 58-214 16-172 (219)
4 TIGR00162 conserved hypothetic 95.8 0.063 1.4E-06 47.3 8.7 111 96-218 4-126 (188)
5 PF10450 POC1: POC1 chaperone; 93.5 2.1 4.6E-05 40.4 13.3 195 5-229 6-241 (273)
6 COG2260 Predicted Zn-ribbon RN 62.1 3.9 8.6E-05 30.8 1.0 14 5-18 26-39 (59)
7 PF04135 Nop10p: Nucleolar RNA 53.7 5 0.00011 29.5 0.3 16 4-19 25-40 (53)
8 PRK13130 H/ACA RNA-protein com 52.2 7.6 0.00016 28.8 1.1 15 5-19 26-40 (56)
9 KOG3112 Uncharacterized conser 37.2 6.8 0.00015 36.7 -1.4 166 57-229 31-229 (262)
10 KOG3503 H/ACA snoRNP complex, 21.1 43 0.00093 25.5 0.7 17 5-21 26-42 (64)
No 1
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=97.90 E-value=1.9e-05 Score=72.70 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=120.2
Q ss_pred CCcEEEEEecCCc-------eeeeeccCCCceeeeeeecCCCCCCCCCCCCCCCCceEEEeecCCCCcEEEEEeeccccc
Q 024760 46 RPTLLIVAISSPS-------LFVFHHLSSKTLIGSLILPEIPFSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCSVAA 118 (263)
Q Consensus 46 ~pslLIiAvs~~S-------~~ll~~i~~~~lvGsl~lpe~~~~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~Vp~ 118 (263)
.+..||.++.+.. -|+... -+-.-+|.+.-...|=- ..+.-.-..+-..||+. +.++++..++.+|++
T Consensus 15 e~~ilI~g~PgiGlVG~Ia~~~li~~-l~m~~iG~i~s~~~PPv-~vv~~G~~~~P~RIY~~---~~~~~~~~~dv~I~p 89 (244)
T COG1938 15 ENPILIEGFPGIGLVGVIAGKHLIEE-LNMEEIGYIESKHIPPV-AVVVEGRALPPFRIYAS---SDGVLALVSDVPIPP 89 (244)
T ss_pred cCCEEEEeCCCCchhhHHHHHHHHHH-cCCeEEEEEEecCCCCE-EEEeCCcccCceeEEec---CCCEEEEEecCCCCH
Confidence 5678888888743 455544 35777888877644311 00100011124567765 359999999999999
Q ss_pred ccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHh
Q 024760 119 ERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALL 196 (263)
Q Consensus 119 er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvL 196 (263)
.--+..++++.+ .+...+.|+++..++..-++. ++-.|-+-|+......- ...+.+.++.| +|.|+.|++|
T Consensus 90 ~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~~~~~~~~l-~~~~~~~~~~G-~I~G~~g~ll 162 (244)
T COG1938 90 AVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVATSEEKLEKL-KDLGAEPLEEG-TIVGPSGALL 162 (244)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEecchhhhhHH-hhcCCCccccc-eeecccHHHH
Confidence 999999999986 455568999999997666655 44445555554422210 01136679999 9999999999
Q ss_pred hcccccccceEEEEec-------cCCCCChHHHHHHHHhccc
Q 024760 197 SRCQLKNIKGTLCVSW-------PEFGGSAVPFIQSLLQKNV 231 (263)
Q Consensus 197 s~CQv~~i~a~L~Vs~-------p~~~~svv~~~~s~L~~~v 231 (263)
++|..++|+|.+++.- |++-.++|+.++.++.-||
T Consensus 163 ~e~~~r~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V 204 (244)
T COG1938 163 NECLKRGIPALVLLAETFGDRPDPRAAARVVEALNKMLGLNV 204 (244)
T ss_pred HHHHHcCCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCcc
Confidence 9999999999988776 5566677888888877765
No 2
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=97.42 E-value=0.0012 Score=59.77 Aligned_cols=147 Identities=12% Similarity=0.266 Sum_probs=97.6
Q ss_pred CCCCcEEEEEecC-------CceeeeeccCCCceeeeeeecCCC-CCCCCCCCCCCCCceEEEeecCCCCcEEEEEeecc
Q 024760 44 PLRPTLLIVAISS-------PSLFVFHHLSSKTLIGSLILPEIP-FSGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCS 115 (263)
Q Consensus 44 ~L~pslLIiAvs~-------~S~~ll~~i~~~~lvGsl~lpe~~-~~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~ 115 (263)
.++...||.++.+ .+-||.++ -+-+.+|.+.-++.| ..+ +.-...-..+.||.-+ +.+++.+....
T Consensus 13 ~~~~~ilI~gfpg~G~VG~iA~~~Li~~-l~~~~ig~I~s~~~pP~v~--v~~g~~~~p~riY~~~---~~~vv~~~~~~ 86 (238)
T TIGR00161 13 DVENPIVIEGFPGVGLVGNIAGWLLIED-LKLREIGYIDSKYFPPLAV--LYKGVAIPPVRIYEGK---DGIVLFLSDFI 86 (238)
T ss_pred cCCCCEEEEeCCCCChHHHHHHHHHHHH-cCCeEEEEEecCCCCCeEE--ecCCeecCceEEEecC---CcEEEEEeccc
Confidence 4667799999988 33566666 357889988887643 221 1111122357788643 22455666667
Q ss_pred cccccHHHHHHHHHh--cccccCeEEEecccccccccCCC----CCChhhhhhhhchhhhccCCCCCccCCCCCCCCccC
Q 024760 116 VAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL----PPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVD 189 (263)
Q Consensus 116 Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~----s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~ 189 (263)
+++.+.+.+++.++. +....++|++|++....+ |-.- +.+......|+.. .+.++.| .++
T Consensus 87 i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~-~~~~v~~~at~~~~~~~l~~~------------~~~~~~g-~i~ 152 (238)
T TIGR00161 87 IPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVRE-KSQPVFGAANSQELIERLKDL------------IEIFPFG-NLN 152 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCC-CCCcEEEEECCHHHHHHHHHh------------cCcCCCC-EEe
Confidence 888888899999985 233358999999999974 2211 3455565555443 1224445 589
Q ss_pred ChHHHHhhcccccccceEEEE
Q 024760 190 GLPAALLSRCQLKNIKGTLCV 210 (263)
Q Consensus 190 GLpAAvLs~CQv~~i~a~L~V 210 (263)
|+.+.+|++|+.++|+|..+.
T Consensus 153 G~~g~ll~~a~~~gi~~i~Ll 173 (238)
T TIGR00161 153 GISGTLLTRCAVNDIPAICLL 173 (238)
T ss_pred chhHHHHHHHHHcCCCEEEEE
Confidence 999999999999999998553
No 3
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=96.23 E-value=0.0051 Score=53.28 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=85.7
Q ss_pred ceeeeeccCCCceeeeeee-cCCCCCCCCCC----CC--CCCCceEEEeecCCCCcEEEEEeecccccccHHHHHHHHHh
Q 024760 58 SLFVFHHLSSKTLIGSLIL-PEIPFSGNSIE----PS--LTDKSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIG 130 (263)
Q Consensus 58 S~~ll~~i~~~~lvGsl~l-pe~~~~g~s~~----ps--~~d~~c~ly~l~~~~~~vLl~~vq~~Vp~er~~aWa~~L~~ 130 (263)
+-||.+++ +-+.+|.+-. +-.|..|+.-- .. ..-..+-||..++ . .+++.+...+++......+++.++.
T Consensus 16 ~d~Li~~l-~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~-~-~i~vl~~~~p~~~~~~~~f~~~l~~ 92 (219)
T PF09754_consen 16 VDHLIESL-NLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSED-S-KILVLQGRSPIPPGRWYEFAEELLD 92 (219)
T ss_dssp HHHHHHHS-CEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEEC-T-TEEEEEESSE--SCGHHHHHHHHHH
T ss_pred HHHHHHhC-CCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECC-C-CEEEEEecCCCCchHHHHHHHHHHH
Confidence 35677773 5788888887 45665443210 00 1112578888883 2 3777777779999999999999885
Q ss_pred --cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHhhcccccccceEE
Q 024760 131 --EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTL 208 (263)
Q Consensus 131 --~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L 208 (263)
+.....+|++|+++++++-.++. +..+..-|....+...+ .++. .....++.|+.+.++..|+.++|++..
T Consensus 93 ~~~~~g~~~vi~l~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~~~l~~~~~~~~i~~~~ 165 (219)
T PF09754_consen 93 WIKSFGVKEVIVLGGLPAMEPHERP----PVYRVATSEELLDKLEE--AGIE-LSEEGIIVGPSGLLLNEAEERGIPAIC 165 (219)
T ss_dssp HHHHTTECEEEEEEEEEESS-TTS-----EEEEEESSGGGHCHSHH--TT-E-E-SEEEE-HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHcCCCEEEEEeCCcCCCCcccc----ceEEEEcCHHHhhhhcc--cccc-cccCCCccCchHHHHHHHHhCCCCceE
Confidence 33345899999999999766321 22232222222222110 1233 333348889999999999999999964
Q ss_pred -EEeccC
Q 024760 209 -CVSWPE 214 (263)
Q Consensus 209 -~Vs~p~ 214 (263)
++..|.
T Consensus 166 l~~~~~~ 172 (219)
T PF09754_consen 166 LLAETPG 172 (219)
T ss_dssp EEEEEEG
T ss_pred EEeecCC
Confidence 444443
No 4
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=95.76 E-value=0.063 Score=47.30 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=72.1
Q ss_pred EEEeec-CCC-CcEEEEEe-ecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC-----CCChhhhhhhhc
Q 024760 96 NIYAVN-DVD-GRILVVSV-QCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL-----PPDETFAFKLET 165 (263)
Q Consensus 96 ~ly~l~-~~~-~~vLl~~v-q~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~-----s~dep~l~~L~T 165 (263)
.||.++ +.+ ..+++..- .+.++++-.+..++.+++ +++..++|+.|++.+....-++. +.+..++..|+.
T Consensus 4 ~~y~~~~~~~~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~trp~V~~~at~~el~~~l~~ 83 (188)
T TIGR00162 4 EFYAWRSDGNGTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEEPYVYGAATSPELVEELKE 83 (188)
T ss_pred eEEEEccCCCCCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCCCceEEEeCCHHHHHHHHh
Confidence 466665 222 34444333 346777777788888875 34446899999999887543332 445556655554
Q ss_pred hhhhccCCCCCccCCC-CCCCCccCChHHHHhhcccccccceE-EEEeccCCCCC
Q 024760 166 SAARKEGPSLLKDVDY-FPSGSMVDGLPAALLSRCQLKNIKGT-LCVSWPEFGGS 218 (263)
Q Consensus 166 sA~r~~~~~~~~~~p~-lp~pnvV~GLpAAvLs~CQv~~i~a~-L~Vs~p~~~~s 218 (263)
. +.+. +| ...++|+.+.+|.+|+.++|+|. |++..|.+-..
T Consensus 84 ~-----------g~~~~~~-~g~i~G~~glLl~~a~~~gi~ai~L~~e~p~y~pD 126 (188)
T TIGR00162 84 H-----------GVKFREP-GGGIIGASGLLLGVSELEGIPGACLMGETPGYMID 126 (188)
T ss_pred c-----------CCeeecC-CCccccHHHHHHHHHHHCCCCeEEEEEeCCCCCCC
Confidence 2 1222 33 45799999999999999999998 55666554333
No 5
>PF10450 POC1: POC1 chaperone; InterPro: IPR018855 This entry represents fungal proteosome chaperone 1, a chaperone of the 20S proteasome which functions in early 20S proteasome assembly [].
Probab=93.53 E-value=2.1 Score=40.45 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=105.3
Q ss_pred CcCCCCCCCCChhhh-ccCCCCCCCCCCcEEEEeCCCCCCCCCCcEEEEEecCCceeee-eccCCCceee----eeeecC
Q 024760 5 LTEIPPPSRFFQEDL-NNFTPPLPPLPSPFLLFSNPKLDAPLRPTLLIVAISSPSLFVF-HHLSSKTLIG----SLILPE 78 (263)
Q Consensus 5 ~t~~pppsrf~~edl-~~f~~~~~~~p~p~~~~s~~~~~~~L~pslLIiAvs~~S~~ll-~~i~~~~lvG----sl~lpe 78 (263)
-+|.+-|--...++. +......++.|-|-|.+.+ .+-. ..+.+||... .-..+| ..+.+.+-+| ++.+.+
T Consensus 6 Wne~~~PRH~LD~~~~~~~~~sl~~~PiP~V~~~~--~~~~-~~~~~iitt~-im~~Lfp~~l~~~~~igei~~tl~~~~ 81 (273)
T PF10450_consen 6 WNETREPRHQLDDPVESADDDSLQPSPIPEVSFPN--IDTS-KYEYIIITTK-IMNPLFPKKLIKLTKIGEIVITLTINE 81 (273)
T ss_pred ccccCCCchhccCccccCCccccCCCCCceEEecc--CCCc-ccceEEEecc-cccccchHhhcCcceeeEEEEEEEecC
Confidence 467777877777654 4444455567777788865 2332 5777887543 323344 3455566667 443432
Q ss_pred CCCCCCCC-------CCCC----------CCC----ceEEEeecCCCCcEEEEEeecc--cccccHHHHHHHHHhccccc
Q 024760 79 IPFSGNSI-------EPSL----------TDK----SCNIYAVNDVDGRILVVSVQCS--VAAERSHAVAKVLIGEEIIP 135 (263)
Q Consensus 79 ~~~~g~s~-------~ps~----------~d~----~c~ly~l~~~~~~vLl~~vq~~--Vp~er~~aWa~~L~~~~l~p 135 (263)
-...+.+- +..+ .++ .-.||.++ .+++++..+.. +++=-.+.-||+|.. ++..
T Consensus 82 ~~~~~~~~~~~~d~dE~~~~ev~~k~~~~~~k~~~~~~pI~~~~---dtllv~i~enfl~~~pI~~N~la~~l~~-~L~~ 157 (273)
T PF10450_consen 82 NSSVEDSEEHSWDEDEQFPNEVDEKQDSNKEKTYSFEIPIYSFG---DTLLVSIKENFLKYSPIFYNFLARQLVS-KLIQ 157 (273)
T ss_pred CCccccccccccccccchhhhhhhhhhhhhhcccceEEEEEEEC---CEEEEEEecCcccccHHHHHHHHHHHHH-HHhc
Confidence 22221111 1111 111 34458777 24444444555 366667788888873 5432
Q ss_pred ---C-eEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHHHHhhcccccccceEEEEe
Q 024760 136 ---E-RVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLCVS 211 (263)
Q Consensus 136 ---e-~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L~Vs 211 (263)
+ ..+.+... |- .-+++ . .....|.|-+|.+|||+.||++|++...+.+.-...-
T Consensus 158 ~~~~i~~~~l~~s-----------D~--i~~~k------~---l~~~~~~L~PPeFITG~~asvlsqL~~~~~~~~~~lV 215 (273)
T PF10450_consen 158 SKNEIKNILLGNS-----------DR--ITNLK------V---LSNSVPSLQPPEFITGFIASVLSQLLSKEVPVFTALV 215 (273)
T ss_pred ccchhhhhcccch-----------hh--hhhce------e---cccCCcccCCccHhHhHHHHHHHHhhccCCCceeEEE
Confidence 1 11222110 00 01111 1 1123688999999999999999999888887422222
Q ss_pred ccC--------CCCChHHHHHHHHhc
Q 024760 212 WPE--------FGGSAVPFIQSLLQK 229 (263)
Q Consensus 212 ~p~--------~~~svv~~~~s~L~~ 229 (263)
.|. .+.+.+.-+-.+++.
T Consensus 216 v~SEGp~GfEK~~~~~i~dl~~v~~~ 241 (273)
T PF10450_consen 216 VPSEGPIGFEKLDLDTIVDLIDVCGQ 241 (273)
T ss_pred ecCCCCCCceecCHHHHHHHHHHHHH
Confidence 333 344445556666665
No 6
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=62.11 E-value=3.9 Score=30.79 Aligned_cols=14 Identities=50% Similarity=0.816 Sum_probs=12.5
Q ss_pred CcCCCCCCCCChhh
Q 024760 5 LTEIPPPSRFFQED 18 (263)
Q Consensus 5 ~t~~pppsrf~~ed 18 (263)
.|.+|-|.||++||
T Consensus 26 ~t~~~~PprFSPeD 39 (59)
T COG2260 26 DTKVPHPPRFSPED 39 (59)
T ss_pred ccccCCCCCCCccc
Confidence 47889999999998
No 7
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=53.70 E-value=5 Score=29.47 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=12.5
Q ss_pred cCcCCCCCCCCChhhh
Q 024760 4 VLTEIPPPSRFFQEDL 19 (263)
Q Consensus 4 ~~t~~pppsrf~~edl 19 (263)
..|..|-|-||+|||=
T Consensus 25 ~~T~~ahPaRFSPdDk 40 (53)
T PF04135_consen 25 GPTESAHPARFSPDDK 40 (53)
T ss_dssp SBSEESSSSSS-TTTT
T ss_pred CCCcCCcCCCCCCCCc
Confidence 3578899999999994
No 8
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=52.16 E-value=7.6 Score=28.77 Aligned_cols=15 Identities=47% Similarity=0.627 Sum_probs=12.9
Q ss_pred CcCCCCCCCCChhhh
Q 024760 5 LTEIPPPSRFFQEDL 19 (263)
Q Consensus 5 ~t~~pppsrf~~edl 19 (263)
-|..+-|-||++||-
T Consensus 26 ~t~~~~P~rfSp~D~ 40 (56)
T PRK13130 26 KTKNPHPPRFSPEDK 40 (56)
T ss_pred CCCCCCCCCCCCCCc
Confidence 478899999999984
No 9
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=6.8 Score=36.65 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=96.1
Q ss_pred CceeeeeccCCCceeeeeeec-CCCCCCCCC-CCCCCC---CceEEEeecCCCCcEEEEEeecccccccHHHHHHHHHhc
Q 024760 57 PSLFVFHHLSSKTLIGSLILP-EIPFSGNSI-EPSLTD---KSCNIYAVNDVDGRILVVSVQCSVAAERSHAVAKVLIGE 131 (263)
Q Consensus 57 ~S~~ll~~i~~~~lvGsl~lp-e~~~~g~s~-~ps~~d---~~c~ly~l~~~~~~vLl~~vq~~Vp~er~~aWa~~L~~~ 131 (263)
.+|.|+-.-..-.=||.+--| =+|+-||+. ++.|.+ ..|-+|... ++ .++++|-..++..--..-.+|.|+.
T Consensus 31 la~dlli~s~~~~rIGy~~~p~LiP~vGn~aY~~~p~~E~~~~~EvYe~~-s~-kl~~~Q~RSp~vk~~~~~F~e~l~~- 107 (262)
T KOG3112|consen 31 LACDLLIASKELRRIGYITHPALIPVVGNSAYQHEPKEEKVSSCEVYEGT-SD-KLLVVQFRSPWVKRHTAHFQEELVE- 107 (262)
T ss_pred HHHHHhhccccchhcccccCCceeeeecCCcCCCCCCcceeeceeeeecc-ch-hhHHHHhhhHHHHhhhhHHHHHHHH-
Confidence 445555432346678999888 588999998 676666 348889766 22 3344444444555555667777773
Q ss_pred ccc---cCeEEEecccccccccCCCCCChhhhhhhhch--------hhhccCCCCCc--c---------CCCCCCCCccC
Q 024760 132 EII---PERVLILDSIQNRNFRGKLPPDETFAFKLETS--------AARKEGPSLLK--D---------VDYFPSGSMVD 189 (263)
Q Consensus 132 ~l~---pe~VivLds~~~~~yrg~~s~dep~l~~L~Ts--------A~r~~~~~~~~--~---------~p~lp~pnvV~ 189 (263)
=+. ..+||||++.-..+-|-..-+.-|+..-|--+ +.+-+-+|+.+ + +.-+|. +
T Consensus 108 ~~kSSG~~~VIVLSss~~~~~~~L~~srgP~~Y~lsnae~~~~~~h~~~Lg~eE~degRcwke~~~Svee~aipg----g 183 (262)
T KOG3112|consen 108 LLKSSGARRVIVLSSSFGFEKRVLEESRGPWAYRLSNAEENFKEAHAAQLGNEELDEGRCWKEHKGSVEEDAIPG----G 183 (262)
T ss_pred HHHhcCCceEEEEecchHHHhhhhhhccCCeeEEcCchhhhhHHHHHHHhCchhhhhccchhhhCCcceeeecCC----C
Confidence 444 37999999987665443333333333333211 11112122211 1 222333 5
Q ss_pred ChHHHHhhcccccccceEEEEec-cCCCCCh-----HHHHHHHHhc
Q 024760 190 GLPAALLSRCQLKNIKGTLCVSW-PEFGGSA-----VPFIQSLLQK 229 (263)
Q Consensus 190 GLpAAvLs~CQv~~i~a~L~Vs~-p~~~~sv-----v~~~~s~L~~ 229 (263)
|..+++...---++++-.++.++ -|.|... |+.++-+++-
T Consensus 184 g~~~~Lf~af~~~~v~m~~Ll~y~sEGDNipdA~lLve~lnel~~~ 229 (262)
T KOG3112|consen 184 GNALQLFKAFDEQKVPMMLLLRYLSEGDNIPDASLLVEELNELCED 229 (262)
T ss_pred ccHHHHHHHHHhcCCchhhHHHHhhcCCCCchHHHHHHHHHHHHHh
Confidence 77788888877888988887787 4555444 3334444444
No 10
>KOG3503 consensus H/ACA snoRNP complex, subunit NOP10 [RNA processing and modification]
Probab=21.10 E-value=43 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.4
Q ss_pred CcCCCCCCCCChhhhcc
Q 024760 5 LTEIPPPSRFFQEDLNN 21 (263)
Q Consensus 5 ~t~~pppsrf~~edl~~ 21 (263)
.|.-.-|.||+|||-..
T Consensus 26 ~T~saHPARFSPdDKyS 42 (64)
T KOG3503|consen 26 QTLSAHPARFSPDDKYS 42 (64)
T ss_pred eecccCccccCcccccc
Confidence 46677899999999653
Done!