Query 024760
Match_columns 263
No_of_seqs 40 out of 42
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p90_A Hypothetical protein CG 95.5 0.027 9.2E-07 51.9 7.1 149 46-209 24-197 (319)
2 3gaa_A Uncharacterized protein 94.8 0.081 2.8E-06 46.8 7.7 163 44-219 23-196 (252)
3 4g4s_O Proteasome chaperone 1; 93.5 0.18 6.3E-06 46.4 7.4 133 96-263 123-276 (276)
4 3mnf_A PAC2 family protein; PS 81.8 1.3 4.6E-05 39.1 4.4 152 46-214 4-184 (250)
5 3e35_A Uncharacterized protein 80.2 4.8 0.00016 37.3 7.7 152 45-214 26-206 (325)
6 2wam_A RV2714, conserved hypot 79.3 3.7 0.00013 38.5 6.7 153 45-215 63-244 (351)
7 2apo_B Ribosome biogenesis pro 55.1 4.5 0.00015 29.3 1.3 15 5-19 27-41 (60)
8 1y2y_A Ribosome biogenesis pro 51.4 5 0.00017 29.1 1.1 15 5-19 26-40 (58)
9 2aus_D NOP10, ribosome biogene 40.1 6.7 0.00023 28.5 0.2 15 5-19 26-40 (60)
10 4g4s_P Proteasome assembly cha 18.7 3.3E+02 0.011 23.9 7.4 99 48-148 4-127 (269)
No 1
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=95.50 E-value=0.027 Score=51.91 Aligned_cols=149 Identities=16% Similarity=0.091 Sum_probs=94.3
Q ss_pred CCcEEEEEecC----------CceeeeeccCCCceeeeeeecCC-------CCCCCCCC-C---CCCCCceEEEeecCCC
Q 024760 46 RPTLLIVAISS----------PSLFVFHHLSSKTLIGSLILPEI-------PFSGNSIE-P---SLTDKSCNIYAVNDVD 104 (263)
Q Consensus 46 ~pslLIiAvs~----------~S~~ll~~i~~~~lvGsl~lpe~-------~~~g~s~~-p---s~~d~~c~ly~l~~~~ 104 (263)
+--.||+|+-+ .+-||+.++ +-..||.+-..+. |.- ++. - ........||..++.+
T Consensus 24 ~~pvli~a~eG~~daG~vg~iA~~hLi~~l-~~~~va~id~d~l~Dy~~~RP~v--~~~~d~~~~~~~p~~~ly~~~~~~ 100 (319)
T 2p90_A 24 GGPTLIVALQGYADAGHAVESSSSHLMDAL-DHRLIASFNNDELIDYRSRRPVV--VIEHNEVTSMDELNLGLHVVRDND 100 (319)
T ss_dssp SCCEEEEEEESSSBGGGHHHHHHHHHHHHS-CEEEEEEECHHHHCBHHHHCCCE--EECSSSEEEECCCCCEEEEEECTT
T ss_pred CCCEEEEEeeeCCChhHHHHHHHHHHHHHc-CCeEEEEEechhcccccCCCCcE--EEECCcccccccCCeEEEEecCCC
Confidence 44588888876 336666663 4778888876543 321 111 0 1333467889887544
Q ss_pred CcEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhch--hhhccCCCCCccCC
Q 024760 105 GRILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETS--AARKEGPSLLKDVD 180 (263)
Q Consensus 105 ~~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~Ts--A~r~~~~~~~~~~p 180 (263)
+.-++.... ++|..+-+..++.+++ +.+..++|++|.+++...-.+ +..... +.+....+.. -.
T Consensus 101 g~~~lll~g-peP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~pht---------rp~~V~~~at~~~l~~~~--~~ 168 (319)
T 2p90_A 101 NKPFLMLSG-PEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHT---------RPTVVTAHGNSTDRLKDQ--VS 168 (319)
T ss_dssp CCEEEEEEE-ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT---------SCCCEEEEESSGGGCSSC--CC
T ss_pred CCeEEEEEC-CCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC---------CCCCeEEEeCCHHHHhhh--hc
Confidence 444444444 9999999999999985 344458999999999862222 111111 1111111111 13
Q ss_pred CCCCCCccCChHHHHhhcccccccceEEE
Q 024760 181 YFPSGSMVDGLPAALLSRCQLKNIKGTLC 209 (263)
Q Consensus 181 ~lp~pnvV~GLpAAvLs~CQv~~i~a~L~ 209 (263)
++..+.+..|+.+.++.+|..++|++..+
T Consensus 169 ~~~~~~ipggi~glL~~~~~~~Gi~a~~l 197 (319)
T 2p90_A 169 LDTRMTVPGSASLMLEKLLKDKGKNVSGY 197 (319)
T ss_dssp CCCCEEECCCHHHHHHHHHHHTTCCEEEE
T ss_pred cccCcEEeccHHHHHHHHHHHCCCCEEEE
Confidence 46778888899999999999999999854
No 2
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=94.76 E-value=0.081 Score=46.83 Aligned_cols=163 Identities=13% Similarity=0.250 Sum_probs=99.5
Q ss_pred CCCCcEEEEEecC-------CceeeeeccCCCceeeeeeecCCCC-CCCCCCCCCCCCceEEEeecCCCCcEEEEEeecc
Q 024760 44 PLRPTLLIVAISS-------PSLFVFHHLSSKTLIGSLILPEIPF-SGNSIEPSLTDKSCNIYAVNDVDGRILVVSVQCS 115 (263)
Q Consensus 44 ~L~pslLIiAvs~-------~S~~ll~~i~~~~lvGsl~lpe~~~-~g~s~~ps~~d~~c~ly~l~~~~~~vLl~~vq~~ 115 (263)
.++...||.++.+ .+-||++++ +-+.+|++-.++.+- ..-. .-..... ..||..+ +..+++.+...+
T Consensus 23 ~l~~pvlI~gf~gaG~vg~lA~~hLi~~l-~~~~vg~id~~~lPp~v~~~-dg~~~~P-~~ly~~~--~~~llll~g~~p 97 (252)
T 3gaa_A 23 NYNNPVVLCGFAGSTPTGVLAASYIVETL-GMHQVAHLISQHIPPVAVFV-GGKLRHP-FRIYANN--SNTVLVAMCEVP 97 (252)
T ss_dssp GCCSCEEEEECCCSSSHHHHHHHHHHHHH-TCEEEEECCCTTSCCCEECG-GGCCBCS-EEEEECT--TSCEEEEEESSC
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHHHHHc-CCeEEEEEecCCCCcEEEeC-CCeEecc-eEEEEEC--CCCEEEEEecCC
Confidence 3455678887766 235666663 477889888776432 1000 1123333 8888764 345666555556
Q ss_pred cccccHHHHHHHHHh--cccccCeEEEecccccccccCCCCCChhhhhhhhchhhhccCCCCCccCCCCCCCCccCChHH
Q 024760 116 VAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKLPPDETFAFKLETSAARKEGPSLLKDVDYFPSGSMVDGLPA 193 (263)
Q Consensus 116 Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~~~~~~~~~~p~lp~pnvV~GLpA 193 (263)
+|..+.+..++.+++ +.+.-++|++|++++..+..+ .|..+.. |+.+...... ..+++.++.+ .+.|..+
T Consensus 98 ~p~~~~~~f~~~vl~~~~~~gv~~vv~Lgg~~~~~~~~-----~p~v~~~-t~~~l~~~l~-~~g~~~~~~g-~i~G~~g 169 (252)
T 3gaa_A 98 ISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGIPE-----ERPVFAV-AEKPKLDKFK-KAGIQPADSA-IIAGMGG 169 (252)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEESCCCS-----SCCCEEE-CCHHHHHHHH-HTTCEECCCS-EECHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCCCC-----CCceEEE-cCHHHHHHHH-hcCCcccCCC-CcCCHHH
Confidence 899999999999985 233358999999999873211 1111111 4433221100 0124545554 6899999
Q ss_pred HHhhcccccccceEEE-EeccCCCCCh
Q 024760 194 ALLSRCQLKNIKGTLC-VSWPEFGGSA 219 (263)
Q Consensus 194 AvLs~CQv~~i~a~L~-Vs~p~~~~sv 219 (263)
.+|.+|.-++|+|.-+ +..|-+-...
T Consensus 170 ~Ll~~~~~~gi~a~~l~~~vp~y~pdP 196 (252)
T 3gaa_A 170 GILNECLVRKITGLSFITPTSVDIPDP 196 (252)
T ss_dssp HHHHHHHHHTCEEEEEEEEEESSSCCH
T ss_pred HHHHHHHHcCCCEEEEEEeCCCCCCCH
Confidence 9999999999999844 4455554443
No 3
>4g4s_O Proteasome chaperone 1; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.18 Score=46.36 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=80.7
Q ss_pred EEEeecCCCCcEEEEEeecc---cccccHHHHHHHHHhccccc--CeEEEecccccccccCCCCCChhhhhhhhchhhhc
Q 024760 96 NIYAVNDVDGRILVVSVQCS---VAAERSHAVAKVLIGEEIIP--ERVLILDSIQNRNFRGKLPPDETFAFKLETSAARK 170 (263)
Q Consensus 96 ~ly~l~~~~~~vLl~~vq~~---Vp~er~~aWa~~L~~~~l~p--e~VivLds~~~~~yrg~~s~dep~l~~L~TsA~r~ 170 (263)
.+|+++ +++++.++.- +|+=-++..||.|.. ++.. .++++|.+...- -.+ +
T Consensus 123 pi~~~~----d~l~v~i~eN~l~~spI~~N~iaq~L~~-~l~~~~~~i~ilgsSdri-------------~~~------K 178 (276)
T 4g4s_O 123 PIYSFG----KTLLFSMEENFISISPIFGNMISRSIIS-QLAQFSPDIIVIGTSDKI-------------ASM------K 178 (276)
T ss_dssp CEEESS----SEEEEEECCCTTTCCHHHHHHHHHHHHH-HHHTTCCEEEEEEEETTC-------------SSC------E
T ss_pred eeEEcC----cEEEEEEecccccccHHHHHHHHHHHHH-HhhccCceEEEecchHHh-------------hhh------h
Confidence 347676 6777776433 566667888999984 7654 367777754432 011 2
Q ss_pred cCCCCCccCCCCCCCCccCChHHHHhhc---ccccccceEEEEeccC-------CCCChHHHHHHHHhcccCCCcccccC
Q 024760 171 EGPSLLKDVDYFPSGSMVDGLPAALLSR---CQLKNIKGTLCVSWPE-------FGGSAVPFIQSLLQKNVLPGMDFGLN 240 (263)
Q Consensus 171 ~~~~~~~~~p~lp~pnvV~GLpAAvLs~---CQv~~i~a~L~Vs~p~-------~~~svv~~~~s~L~~~v~~~~~~~~~ 240 (263)
+- ....|.|-+|.+|+|+.||++|+ |+-.++....+|-=-| ++...+..+-.++.. +| .+|
T Consensus 179 ~~---s~~~p~L~PP~fITG~~asllsqL~~~~~~~~~~~~lv~~sEG~~GfEK~~~~~i~~l~~i~~~-~l-~~d---- 249 (276)
T 4g4s_O 179 VM---TENECTLQPPEFITGFIGSVLTQLIVGPSKGLKFKCLVAPSEGPNGFEKLSLSDMGSLVDLCGQ-WL-GFE---- 249 (276)
T ss_dssp EE---ESSCCCCCTTCCBCSHHHHHHHHHHSSTTTTCCEEEEEEECBSSTTSCBCCHHHHHHHHHHHHH-HH-TCC----
T ss_pred hh---ccCCCCcCCcchhhhHHHHHHHhhccccccCcceEEEEecCCCCCCceecchHHHHHHHHHHHH-Hh-cCC----
Confidence 21 11357899999999999999996 7777777766654322 333445555556655 33 122
Q ss_pred CCCCCccc----cccccCCC--CCCCCCC
Q 024760 241 NGEDGYSW----FSQNRNRP--FDSELYT 263 (263)
Q Consensus 241 ~~~~~~~~----~~~~~~~~--~ds~ly~ 263 (263)
. .+|.+ ..|..+-. .+++||+
T Consensus 250 -~-~~Y~~~~~r~~r~~~~~~gs~sGlYi 276 (276)
T 4g4s_O 250 -P-SRYSEECYRLWRCDSAAIGAQSGLYI 276 (276)
T ss_dssp -T-THHHHHHHHHHHHSGGGHHHHTTSBC
T ss_pred -H-HHHHHHHHHHHHHhcccccccccccC
Confidence 1 22443 33555555 4678886
No 4
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=81.80 E-value=1.3 Score=39.06 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCcEEEEEecCC----------ceeeeeccCCCceeeeeeecCC-------CC---CCCCCCCCCCCCceEEEeecCCCC
Q 024760 46 RPTLLIVAISSP----------SLFVFHHLSSKTLIGSLILPEI-------PF---SGNSIEPSLTDKSCNIYAVNDVDG 105 (263)
Q Consensus 46 ~pslLIiAvs~~----------S~~ll~~i~~~~lvGsl~lpe~-------~~---~g~s~~ps~~d~~c~ly~l~~~~~ 105 (263)
+--.||.|+.+. +-||+.++ +-+.+|++-..+. |. .+......-....-.+|+.+|..+
T Consensus 4 ~~pvlI~gf~G~~DAG~vg~~a~~hL~~~l-~~~~va~id~d~~~dy~~~rP~v~~~~g~~~~~~p~~~~~~~~~~d~~~ 82 (250)
T 3mnf_A 4 IDPVMVAAFEGWNDAGDAASTAVAHLDREW-KGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVGGEKP 82 (250)
T ss_dssp -CCEEEEEEESTTBTTSHHHHHHHHHHHHT-TCEEEEECCGGGTCCTTTSCCEEEEETTEEEEECCCEEEEEEEEESSSE
T ss_pred CCCEEEEeCCCCCccChHHHHHHHHHHHHc-CCeEEEEEechhccccCCCCCEEEEeCCEEEeecCCceEEEEecCCCCC
Confidence 334789999553 36677663 4677888776542 21 111000000122445588764333
Q ss_pred cEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC------CCChhhhhhhhchhhhccCCCCCc
Q 024760 106 RILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL------PPDETFAFKLETSAARKEGPSLLK 177 (263)
Q Consensus 106 ~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~------s~dep~l~~L~TsA~r~~~~~~~~ 177 (263)
.-++.. +...|..+.+..++.+++ +.+.-++|+.|.+++..---++- +.+..++..++.
T Consensus 83 ~~~lll-~g~eP~~~w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~phtrp~~v~~~at~~~l~~~~~~------------ 149 (250)
T 3mnf_A 83 RDLVLV-RGIEPSMRWRSFCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSGVTSDPDLARTMDL------------ 149 (250)
T ss_dssp EEEEEE-EEECCSSCHHHHHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEEEECCHHHHHHSCC------------
T ss_pred CcEEEE-ECCCCchHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCcceEEEECCHHHHHhhhc------------
Confidence 333333 566788888888988885 23345899999999654221211 223333322221
Q ss_pred cCCCCCCCCccCChHHHHhhcccccccceEEE-EeccC
Q 024760 178 DVDYFPSGSMVDGLPAALLSRCQLKNIKGTLC-VSWPE 214 (263)
Q Consensus 178 ~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L~-Vs~p~ 214 (263)
..+.=...+|+.+.++.+|..++|+|.-+ +..|-
T Consensus 150 ---~~~~~~~p~gi~glL~~~~~~~gi~a~~l~~~vp~ 184 (250)
T 3mnf_A 150 ---EETKYEGPTGIVGILQEACTHAGVPAVSLWAAVPH 184 (250)
T ss_dssp ---CCCCCCSCCCHHHHHHHHHHHHTCCEEEEEEEEEG
T ss_pred ---cccccccCccHHHHHHHHHHHCCCCEEEEEEeCCc
Confidence 11122236899999999999999999844 33443
No 5
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=80.24 E-value=4.8 Score=37.33 Aligned_cols=152 Identities=9% Similarity=0.051 Sum_probs=91.4
Q ss_pred CCCcEEEEEecCC----------ceeeeeccCCCceeeeeeecCC-------C---CCCCCCCCCCCCCceEEEeecCCC
Q 024760 45 LRPTLLIVAISSP----------SLFVFHHLSSKTLIGSLILPEI-------P---FSGNSIEPSLTDKSCNIYAVNDVD 104 (263)
Q Consensus 45 L~pslLIiAvs~~----------S~~ll~~i~~~~lvGsl~lpe~-------~---~~g~s~~ps~~d~~c~ly~l~~~~ 104 (263)
|+--.||.|+.+. +-||+.++ .-+.+|++-..+. | +..... .........||..+++.
T Consensus 26 l~~pvLI~af~G~~DAG~vg~~A~~hLi~~l-~~~~va~~d~d~l~Dyr~~RP~v~~~~d~~-~~~~~P~~~ly~~~d~~ 103 (325)
T 3e35_A 26 SAGLVMLYHFDGYIDAGETGDQIVDQVLDSL-PHQVVARFDHDRLVDYRARRPLLTFKRDTW-SDYEEPTIEVRLVQDAT 103 (325)
T ss_dssp TTCEEEEEEEESSCCGGGHHHHHHHHHHHHS-CEEEEEEECHHHHSCTTTSCCCEEEETTEE-EEECCCCCEEEEEECTT
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHHHHc-CCeEEEEEeccccccccCCCCcEEEEcCcc-eeeecCCeEEEEecCCC
Confidence 3445889999662 35666663 3677888776543 2 110000 11333467889888544
Q ss_pred CcEEEEEeecccccccHHHHHHHHHh--cccccCeEEEecccccccccCCC------CCChhhhhhhhchhhhccCCCCC
Q 024760 105 GRILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRNFRGKL------PPDETFAFKLETSAARKEGPSLL 176 (263)
Q Consensus 105 ~~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~yrg~~------s~dep~l~~L~TsA~r~~~~~~~ 176 (263)
+.-++... ...|.-+-...++.+++ +.+..++|+.|.+++...--++- +.+..++..++
T Consensus 104 ~~~~llL~-G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHtRP~~V~~~at~~el~~~~~------------ 170 (325)
T 3e35_A 104 GAPFLFLS-GPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHTRPVGITPHGSRTDLVPGHR------------ 170 (325)
T ss_dssp CCEEEEEE-EECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTTSCCCEEEEESCGGGCC---------------
T ss_pred CCcEEEEE-CCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCCCCceeEEEeCCHHHHHhhc------------
Confidence 33333333 47888888888988885 33345789999999977433321 22222222222
Q ss_pred ccCCCCCCCCccCChHHHHhhcccccccceE-EEEeccC
Q 024760 177 KDVDYFPSGSMVDGLPAALLSRCQLKNIKGT-LCVSWPE 214 (263)
Q Consensus 177 ~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~-L~Vs~p~ 214 (263)
..+..-...+|+.+.++..|.-++|.+. |.+..|.
T Consensus 171 ---~~~~~~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPh 206 (325)
T 3e35_A 171 ---SPFEEAQVPGSAEALVEYRLAQAGHDVLGVAAHVPH 206 (325)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHTTCCEEEEEEEEEG
T ss_pred ---cccccCCCcccHHHHHHHHHHHCCCCeEEEEEEcCc
Confidence 1233445689999999999999999997 4444553
No 6
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=79.32 E-value=3.7 Score=38.49 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=90.8
Q ss_pred CCCcEEEEEecC----------CceeeeeccCCCceeeeeeecCC-------C---CCCCCCCCCCCCCceEEEeecCCC
Q 024760 45 LRPTLLIVAISS----------PSLFVFHHLSSKTLIGSLILPEI-------P---FSGNSIEPSLTDKSCNIYAVNDVD 104 (263)
Q Consensus 45 L~pslLIiAvs~----------~S~~ll~~i~~~~lvGsl~lpe~-------~---~~g~s~~ps~~d~~c~ly~l~~~~ 104 (263)
|+--.||.|+.+ .+-||+.++ .-+.+|++--.+. | +..... .........||..++..
T Consensus 63 l~~pvLI~gf~G~~DAG~vg~iA~~hLi~~L-~~~~va~~d~d~~~Dyr~~RP~v~~~~dg~-~~~~~P~~~ly~~~d~~ 140 (351)
T 2wam_A 63 GRGPVLVHALEGFSDAGHAIRLAAAHLKAAL-DTELVASFAIDELLDYRSRRPLMTFKTDHF-THSDDPELSLYALRDSI 140 (351)
T ss_dssp SCCCEEEEEEESSCCGGGHHHHHHHHHHHHS-EEEEEEEECHHHHCBTTTSCCEEEEETTEE-EEECCCCEEEEEEECTT
T ss_pred cCCCEEEEeCCCCcccchHHHHHHHHHHHHc-CCeEEEEEechhccccccCCCcEEEEcCCc-eEeeCCceEEEEeccCC
Confidence 455689998887 235666663 3667787744332 2 110000 01334467888877433
Q ss_pred CcEEEEEeecccccccHHHHHHHHHh--cccccCeEEEeccccccc--ccCCC----CCChhhhhhhhchhhhccCCCCC
Q 024760 105 GRILVVSVQCSVAAERSHAVAKVLIG--EEIIPERVLILDSIQNRN--FRGKL----PPDETFAFKLETSAARKEGPSLL 176 (263)
Q Consensus 105 ~~vLl~~vq~~Vp~er~~aWa~~L~~--~~l~pe~VivLds~~~~~--yrg~~----s~dep~l~~L~TsA~r~~~~~~~ 176 (263)
+.-++. .....|..+-...++.++. +.+..++|+.|.+++... -|-.. +.+..++..+.
T Consensus 141 g~~~Ll-L~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~~at~~el~~~~~------------ 207 (351)
T 2wam_A 141 GTPFLL-LAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTAHSNNRELISDFQ------------ 207 (351)
T ss_dssp CCEEEE-EEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEEESSGGGGTTSC------------
T ss_pred CCcEEE-EECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEEEECCHHHHHhcC------------
Confidence 222332 3345799999999999885 344458999999998862 22211 11222222210
Q ss_pred ccCCCCCCCCccCChHHHHhhcccccccceEEE-EeccCC
Q 024760 177 KDVDYFPSGSMVDGLPAALLSRCQLKNIKGTLC-VSWPEF 215 (263)
Q Consensus 177 ~~~p~lp~pnvV~GLpAAvLs~CQv~~i~a~L~-Vs~p~~ 215 (263)
. ....-....|+++.++.+|..++|+|.-+ +..|-+
T Consensus 208 --~-~~~~~~gp~GisglL~~~~~~~Gi~a~~l~~~vP~Y 244 (351)
T 2wam_A 208 --P-SISEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHY 244 (351)
T ss_dssp --C-CCCSEEEECCHHHHHHHHHHHTTCCEEEEEEEEEGG
T ss_pred --C-ccCcccccccHHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence 1 12234578999999999999999999854 455554
No 7
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=55.06 E-value=4.5 Score=29.30 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=13.1
Q ss_pred CcCCCCCCCCChhhh
Q 024760 5 LTEIPPPSRFFQEDL 19 (263)
Q Consensus 5 ~t~~pppsrf~~edl 19 (263)
-|..+-|-||+|||-
T Consensus 27 ~T~~~hParfSp~Dk 41 (60)
T 2apo_B 27 KTVIPKPPKFSLEDR 41 (60)
T ss_dssp BCBCCCCCCCCTTCT
T ss_pred cCCCCCCCCCCCCcc
Confidence 488899999999984
No 8
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=51.45 E-value=5 Score=29.10 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=13.2
Q ss_pred CcCCCCCCCCChhhh
Q 024760 5 LTEIPPPSRFFQEDL 19 (263)
Q Consensus 5 ~t~~pppsrf~~edl 19 (263)
-|..+-|-||+|||-
T Consensus 26 ~T~sahPaRFSPdDk 40 (58)
T 1y2y_A 26 ITKSAHPARFSPDDK 40 (58)
T ss_dssp SSSSSCSSSSCSCTT
T ss_pred ccccCCCCCCCCCcc
Confidence 488899999999994
No 9
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=40.09 E-value=6.7 Score=28.46 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.4
Q ss_pred CcCCCCCCCCChhhh
Q 024760 5 LTEIPPPSRFFQEDL 19 (263)
Q Consensus 5 ~t~~pppsrf~~edl 19 (263)
-|..+-|-||+|||=
T Consensus 26 ~t~~ahParfSP~Dk 40 (60)
T 2aus_D 26 KTKVAHPPRFSPEDP 40 (60)
T ss_dssp BCEESSCCCCCSCCT
T ss_pred ccCCCCCCCCCCCCc
Confidence 367788999999984
No 10
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=18.66 E-value=3.3e+02 Score=23.94 Aligned_cols=99 Identities=9% Similarity=0.137 Sum_probs=53.1
Q ss_pred cEEEEEecC------Cceee-eeccC-CCceeeeeeec-CCCCCCCCCC------CC-CCC-----CceEEEeecCCCCc
Q 024760 48 TLLIVAISS------PSLFV-FHHLS-SKTLIGSLILP-EIPFSGNSIE------PS-LTD-----KSCNIYAVNDVDGR 106 (263)
Q Consensus 48 slLIiAvs~------~S~~l-l~~i~-~~~lvGsl~lp-e~~~~g~s~~------ps-~~d-----~~c~ly~l~~~~~~ 106 (263)
++||+-.-+ .|+.| +|++. ...-||.+--+ =+|+.|+.-- +. ..+ .+|-+|... + ..
T Consensus 4 stLIlP~VSvGNVgQLavDLLI~tl~~~~~kVG~l~~~~l~P~vGp~~~~~~~~~~~~~~~~~~lsta~EvY~~~-~-~~ 81 (269)
T 4g4s_P 4 SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKDADMKYSSALEVFYNK-K-RG 81 (269)
T ss_dssp CEEEEECCCGGGHHHHHHHHHHHHTCSSEEEEEECCCTTBCCCEECCCCBSSSCCCSCCCTTCCCEESEEEEEET-T-TT
T ss_pred eEEEEeccccccHHHHHHHHHHhcCcccceEEEEecCCcccceeCCcccccccccccccCCccceeeeEEEEEcC-C-CC
Confidence 456654333 33444 56654 36789988765 3566553221 00 001 146688755 2 34
Q ss_pred EEEEEeeccccc-ccHHH-HHHHHHh--cccccCeEEEeccccccc
Q 024760 107 ILVVSVQCSVAA-ERSHA-VAKVLIG--EEIIPERVLILDSIQNRN 148 (263)
Q Consensus 107 vLl~~vq~~Vp~-er~~a-Wa~~L~~--~~l~pe~VivLds~~~~~ 148 (263)
+.+.|-.-+|-. -...+ .++.|.. ++-.-.+||+|+|..+.+
T Consensus 82 l~viQqRSPii~~~~~~~~f~e~L~~~i~~~~f~~VivLsS~~a~~ 127 (269)
T 4g4s_P 82 LFAIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLYAME 127 (269)
T ss_dssp EEEEEECSCBSCGGGHHHHHHHHHHHHHHGGGCSEEEEECCBCCC-
T ss_pred EEEEEEeccccccchhhHHHHHHHHHHHHHcCCCEEEEEecCcccc
Confidence 666666666533 22322 3443331 345568999999998865
Done!