BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024761
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 15/234 (6%)
Query: 19 CIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVL 78
L + D + L + GF + ++ + Q +D +K FF LP+ K +
Sbjct: 11 SFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA 70
Query: 79 R-NEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDIL 137
RGY P E H D KE ++ G ++P G + NVWPA +
Sbjct: 71 GVKGGARGYIPFGVETAK--GADHYDLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--I 124
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
P ++ + + V IA L L DFF KP + + + LRLLHY D
Sbjct: 125 PAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFF-KPTVQ-DGNSVLRLLHYPPIPKD 182
Query: 198 PSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCH 251
+ G+ AGAH D ITLL E GL++ D+D + W + P G ++ +
Sbjct: 183 -ATGVR-AGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVIN 230
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 33/240 (13%)
Query: 17 LHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIK 76
L ID + D S ++ + GF + NH I +E ++ ++T+ + FFN +
Sbjct: 4 LETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFX 60
Query: 77 VLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDI 136
R E H G+ P V D KE Y+ V+P I
Sbjct: 61 FNR-ETHDGFFPASISETAKGHTVK-DIKEYYH--------------------VYPWGRI 98
Query: 137 LPGWRETMDRFHQEALEVAKVVARIIALAL--DLNADF-FDKPEILGEPIATL-RLLHYE 192
R + ++++A +A + I ++ A F PE + TL R+LHY
Sbjct: 99 PDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYP 158
Query: 193 GQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHF 252
T D G A AH D LIT+L T GLQ+ AK W VP G ++ +
Sbjct: 159 PXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQV----KAKDGSWLDVPSDFGNIIINI 214
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+ A D GFFY +NHGI+ + + +Q + F++ + + K + R Y H +
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKW--DLAIRAYNKEHQDQ 85
Query: 94 LDPDTQVHGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWPAPDIL 137
+ + GYY+ + P P +++ P + NVWP
Sbjct: 86 V----------RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKH 135
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
PG+++ ++++ + ++ + + ALAL +FF + + +A++ L+ Y
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 198 PSKGIYGAGA--------HSDFGLITLLATDEVLGLQI 227
P I A H D LIT+L V LQ+
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+ A D GFFY +NHGI+ + + +Q + F++ + + K + R Y H +
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKW--DLAIRAYNKEHQDQ 85
Query: 94 LDPDTQVHGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWPAPDIL 137
+ + GYY+ + P P +++ P + NVWP
Sbjct: 86 V----------RAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKH 135
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
PG+++ ++++ + ++ + + ALAL +FF + + +A++ L+ Y
Sbjct: 136 PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPY 195
Query: 198 PSKGIYGAGA--------HSDFGLITLLATDEVLGLQI 227
P I A H D LIT+L V LQ+
Sbjct: 196 PEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV 233
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
LK+A LD G ++INHGI + M+ V + FF+L + EK K N++ G +
Sbjct: 69 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK-YANDQATGKIQGYGSK 127
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
L + ++ E Y+ + PE + ++WP + E + +
Sbjct: 128 LANNASGQLEW-EDYFFHLAYPEEKRDL-------SIWPKTP--SDYIEATSEYAKCLRL 177
Query: 154 VAKVVARIIALALDLNADFFDKPEILG-EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFG 212
+A V + +++ L L D +K E+ G E + ++Y + P + G AH+D
Sbjct: 178 LATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVS 235
Query: 213 LITLLATDEVLGLQI 227
+T + + V GLQ+
Sbjct: 236 ALTFILHNMVPGLQL 250
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
LK+A LD G ++INHGI + M+ V + FF+L + EK K N++ G +
Sbjct: 70 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK-YANDQATGKIQGYGSK 128
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALE 153
L + ++ E Y+ + PE + ++WP + E + +
Sbjct: 129 LANNASGQLEW-EDYFFHLAYPEEKRDL-------SIWPKTP--SDYIEATSEYAKCLRL 178
Query: 154 VAKVVARIIALALDLNADFFDKPEILG-EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFG 212
+A V + +++ L L D +K E+ G E + ++Y + P + G AH+D
Sbjct: 179 LATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVS 236
Query: 213 LITLLATDEVLGLQI 227
+T + + V GLQ+
Sbjct: 237 ALTFILHNMVPGLQL 251
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 16/226 (7%)
Query: 5 EQSKIGSKAHTV-LHCIDLSSPDIHQS-VSLLKQACLDCGFFYVINHGISQEFMDEVFTQ 62
E+ + G + T+ L I+ I ++ + LK+A LD G ++INHGI + + V
Sbjct: 39 EKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKA 98
Query: 63 SKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESE 122
+ FF+L + EK K N++ G + L + ++ E Y+ + PE +
Sbjct: 99 GEEFFSLSVEEKEK-YANDQATGKIQGYGSKLANNASGQLEW-EDYFFHLAYPEEKRDL- 155
Query: 123 KPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILG-E 181
++WP + E + + +A V + +++ L L D +K E+ G E
Sbjct: 156 ------SIWPKTP--SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLE 206
Query: 182 PIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQI 227
+ ++Y + P + G AH+D +T + + V GLQ+
Sbjct: 207 ELLLQXKINYYPKCPQPELAL-GVEAHTDVSALTFILHNXVPGLQL 251
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 37/225 (16%)
Query: 34 LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDEL 93
+K AC + GFF ++NHGI +E D V +K + ++ K L
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKEL--------------- 68
Query: 94 LDPDTQVHGDYKEGYYIGVEVPEGDPESE---KPFYGPNVWPAPDILPGWRETMDRFHQE 150
V EG + EV + D ES K N+ PD+ +RE F +
Sbjct: 69 ------VASKALEG--VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKR 120
Query: 151 ALEVAKVVARIIALALDLNADFFDKPEILGE--PIATLRLLHYEGQTSDPSKGIYGAGAH 208
++A+ + ++ L L + K G P ++ +Y I G AH
Sbjct: 121 LEKLAEELLDLLCENLGLEKGYL-KNAFYGSKGPNFGTKVSNY--PPCPKPDLIKGLRAH 177
Query: 209 SDF-GLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHF 252
+D G+I L D+V GLQ+ KD W VPP + ++ +
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNL 217
>pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
Length = 534
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 117 GDPESEKPFYGP-NVWPAPDILPGWRETMDRFHQEALEVAKVVA 159
G+P++++P Y N P PD W+ +DRFHQ + A V A
Sbjct: 211 GEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSA 254
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 31/193 (16%)
Query: 34 LKQACLDCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGY 86
++ D G FY+ + G++ ++ + + F + + +R RG+
Sbjct: 22 FRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGF 77
Query: 87 TPLHDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETM 144
T L E +T + DY Y +G N++P+ D W +
Sbjct: 78 TGLESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYF 123
Query: 145 DRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYG 204
DR + + VA+ V R D + F + EP+ R + +
Sbjct: 124 DRQYTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLR 179
Query: 205 AGAHSDFGLITLL 217
H D ++TL+
Sbjct: 180 MAPHYDLSMVTLI 192
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 31/193 (16%)
Query: 34 LKQACLDCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGY 86
++ D G FY+ + G++ ++ + + F + + +R RG+
Sbjct: 22 FRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMR----RGF 77
Query: 87 TPLHDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETM 144
T L E +T + DY Y +G N++P+ D W +
Sbjct: 78 TGLESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYF 123
Query: 145 DRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYG 204
DR + + VA+ V R D + F + EP+ R + +
Sbjct: 124 DRQYTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLR 179
Query: 205 AGAHSDFGLITLL 217
H D ++TL+
Sbjct: 180 MAPHYDLSMVTLI 192
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 31/193 (16%)
Query: 34 LKQACLDCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGY 86
++ D G FY+ + G++ ++ + + F + + +R RG+
Sbjct: 42 FRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMR----RGF 97
Query: 87 TPLHDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETM 144
T L E +T + DY Y +G N++P+ D W +
Sbjct: 98 TGLESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYF 143
Query: 145 DRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYG 204
DR + + VA+ V R D + F + EP+ R + +
Sbjct: 144 DRQYTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLR 199
Query: 205 AGAHSDFGLITLL 217
H D ++TL+
Sbjct: 200 MAPHYDLSMVTLI 212
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 31/193 (16%)
Query: 34 LKQACLDCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGY 86
++ D G FY+ + G++ ++ + + F + + +R RG+
Sbjct: 22 FRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGF 77
Query: 87 TPLHDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETM 144
T L E +T + DY Y +G N++P+ D W +
Sbjct: 78 TGLESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYF 123
Query: 145 DRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYG 204
DR + + VA+ V R D + F + EP+ R + +
Sbjct: 124 DRQYTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLR 179
Query: 205 AGAHSDFGLITLL 217
H D ++TL+
Sbjct: 180 MAPHYDLSMVTLI 192
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 31/193 (16%)
Query: 34 LKQACLDCGFFYVINHGIS-------QEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGY 86
++ D G FY+ + G++ ++ + + F + + +R RG+
Sbjct: 22 FRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGSEAEKRAVTSPVPTMR----RGF 77
Query: 87 TPLHDELLD--PDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETM 144
T L E +T + DY Y +G N++P+ D W +
Sbjct: 78 TGLESESTAQITNTGSYSDYSMCYSMGT--------------ADNLFPSGDFERIWTQYF 123
Query: 145 DRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYG 204
DR + + VA+ V R D + F + EP+ R + +
Sbjct: 124 DRQYTASRAVAREVLRATGTEPDGGVEAF----LDCEPLLRFRYFPQVPEHRSAEEQPLR 179
Query: 205 AGAHSDFGLITLL 217
H D ++TL+
Sbjct: 180 MAPHYDLSMVTLI 192
>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
Dehydrogenase From Corynebacterium Glutamicum
Length = 508
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 83 HRGYTPLHDELLDPDTQVHGDYKEGYYIGVE-VPEGDPESEKPFYGPNVWPAPDILPGWR 141
H+G + + D VH ++ E + V+ +P GDP +E GP + + L G +
Sbjct: 289 HQGQICMSINRVIVDAAVHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQ--LSGLK 346
Query: 142 ETMDRFHQEALEV 154
E ++ +E V
Sbjct: 347 EKIELAKKEGATV 359
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 107 GYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGW 140
GYY+ ++P GDP+S P P V A GW
Sbjct: 91 GYYVLSKIPHGDPQSLDP---PEVSNAKLQYAGW 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,886,279
Number of Sequences: 62578
Number of extensions: 401382
Number of successful extensions: 811
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 19
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)