Query 024762
Match_columns 263
No_of_seqs 168 out of 337
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_B Protein (transcription 100.0 7.5E-38 2.6E-42 248.0 6.0 93 90-184 2-94 (95)
2 2aze_A Transcription factor DP 99.9 3.4E-24 1.2E-28 182.3 9.6 79 182-260 2-83 (155)
3 1cf7_A Protein (transcription 99.7 1.4E-17 4.6E-22 126.6 5.2 65 96-180 8-75 (76)
4 1sfx_A Conserved hypothetical 87.9 2.2 7.4E-05 30.4 7.2 52 98-170 16-67 (109)
5 1qbj_A Protein (double-strande 81.3 2.4 8.2E-05 31.6 5.0 55 104-179 12-70 (81)
6 3r0a_A Putative transcriptiona 80.1 7.2 0.00025 30.0 7.6 52 98-170 22-75 (123)
7 1qgp_A Protein (double strande 80.0 2.4 8.3E-05 30.9 4.6 53 105-178 17-73 (77)
8 2fu4_A Ferric uptake regulatio 79.5 2.8 9.6E-05 29.7 4.7 49 105-169 20-70 (83)
9 3g3z_A NMB1585, transcriptiona 77.9 17 0.00057 27.4 9.0 51 98-169 27-77 (145)
10 3qph_A TRMB, A global transcri 75.5 1.4 4.8E-05 40.4 2.6 34 148-181 43-77 (342)
11 2htj_A P fimbrial regulatory p 74.4 5.6 0.00019 28.2 5.1 52 105-177 3-58 (81)
12 1p6r_A Penicillinase repressor 73.9 9.4 0.00032 26.9 6.2 61 99-176 6-68 (82)
13 2hr3_A Probable transcriptiona 73.5 19 0.00065 26.9 8.2 52 98-170 31-83 (147)
14 1ku9_A Hypothetical protein MJ 71.8 28 0.00094 25.7 9.6 61 98-179 22-87 (152)
15 1oyi_A Double-stranded RNA-bin 71.8 3 0.0001 31.7 3.3 57 100-178 15-72 (82)
16 1okr_A MECI, methicillin resis 70.8 22 0.00074 26.3 7.8 65 98-179 6-72 (123)
17 1ub9_A Hypothetical protein PH 69.5 8.2 0.00028 27.3 5.0 44 105-169 19-62 (100)
18 3nmd_A CGMP dependent protein 68.6 16 0.00055 27.4 6.5 38 186-223 20-57 (72)
19 2qww_A Transcriptional regulat 66.7 13 0.00046 28.1 6.0 50 99-169 38-87 (154)
20 2yy0_A C-MYC-binding protein; 66.2 13 0.00043 26.1 5.2 31 184-214 18-48 (53)
21 2o03_A Probable zinc uptake re 65.2 12 0.00042 29.0 5.6 56 98-169 5-63 (131)
22 2oqg_A Possible transcriptiona 64.9 37 0.0013 24.6 9.8 43 105-169 24-66 (114)
23 3s2w_A Transcriptional regulat 62.9 39 0.0013 25.8 8.2 51 98-169 46-96 (159)
24 3bpv_A Transcriptional regulat 62.5 43 0.0015 24.5 8.2 51 98-169 25-75 (138)
25 3eyy_A Putative iron uptake re 62.1 8.6 0.00029 30.7 4.3 48 106-169 23-70 (145)
26 1tbx_A ORF F-93, hypothetical 61.0 23 0.00078 25.4 6.1 55 98-169 4-58 (99)
27 2fe3_A Peroxide operon regulat 60.4 11 0.00036 30.0 4.5 48 106-169 26-74 (145)
28 1ci6_A Transcription factor AT 60.1 32 0.0011 24.4 6.6 38 186-223 24-61 (63)
29 1mzb_A Ferric uptake regulatio 60.0 13 0.00046 29.0 5.0 48 106-169 22-71 (136)
30 2fbi_A Probable transcriptiona 59.9 39 0.0013 24.8 7.4 51 98-169 32-82 (142)
31 2a61_A Transcriptional regulat 59.7 50 0.0017 24.4 10.1 51 98-169 29-79 (145)
32 1xn7_A Hypothetical protein YH 58.7 7.6 0.00026 28.7 3.2 45 105-170 5-49 (78)
33 2fbh_A Transcriptional regulat 58.3 53 0.0018 24.2 8.9 52 98-170 33-85 (146)
34 3deu_A Transcriptional regulat 57.3 67 0.0023 25.1 9.8 52 98-170 49-101 (166)
35 3cuo_A Uncharacterized HTH-typ 57.1 15 0.00051 25.9 4.5 44 105-169 27-70 (99)
36 2eth_A Transcriptional regulat 57.0 58 0.002 24.7 8.2 51 98-169 40-90 (154)
37 2xig_A Ferric uptake regulatio 56.5 19 0.00064 28.8 5.4 56 98-169 21-79 (150)
38 2rdp_A Putative transcriptiona 55.9 54 0.0018 24.4 7.7 51 98-169 38-88 (150)
39 3mwm_A ZUR, putative metal upt 55.8 17 0.00057 28.8 4.9 57 97-169 7-66 (139)
40 1s3j_A YUSO protein; structura 55.0 60 0.0021 24.3 7.9 51 98-169 33-83 (155)
41 3jth_A Transcription activator 54.1 13 0.00045 26.8 3.8 42 106-169 27-68 (98)
42 2w57_A Ferric uptake regulatio 53.8 15 0.00051 29.4 4.4 48 106-169 21-70 (150)
43 2k02_A Ferrous iron transport 53.6 9.2 0.00032 29.1 2.9 44 106-170 6-49 (87)
44 2nnn_A Probable transcriptiona 53.3 29 0.00098 25.5 5.7 50 99-169 35-84 (140)
45 1lj9_A Transcriptional regulat 53.2 66 0.0023 23.8 9.8 51 98-169 25-75 (144)
46 2d1h_A ST1889, 109AA long hypo 53.0 46 0.0016 23.3 6.6 52 98-170 17-69 (109)
47 3cjn_A Transcriptional regulat 52.6 74 0.0025 24.2 8.8 51 98-169 48-98 (162)
48 2cfx_A HTH-type transcriptiona 51.9 20 0.00067 27.9 4.7 48 102-170 5-52 (144)
49 2nyx_A Probable transcriptiona 51.6 82 0.0028 24.4 9.2 51 98-169 41-91 (168)
50 1i1g_A Transcriptional regulat 51.5 19 0.00064 27.4 4.5 47 104-171 6-52 (141)
51 3kp7_A Transcriptional regulat 50.4 78 0.0027 23.8 8.5 51 99-171 35-85 (151)
52 1u2w_A CADC repressor, cadmium 49.9 11 0.00036 28.9 2.8 43 106-169 46-88 (122)
53 3ech_A MEXR, multidrug resista 49.8 77 0.0026 23.6 8.6 52 98-170 33-84 (142)
54 2p5v_A Transcriptional regulat 49.4 22 0.00076 28.0 4.8 49 100-169 8-56 (162)
55 1r1u_A CZRA, repressor protein 49.0 29 0.001 25.5 5.1 50 106-177 30-81 (106)
56 2cg4_A Regulatory protein ASNC 48.3 24 0.00082 27.5 4.7 49 100-169 6-54 (152)
57 3twe_A Alpha4H; unknown functi 48.3 31 0.0011 21.2 4.1 22 187-208 3-24 (27)
58 1jgs_A Multiple antibiotic res 48.0 56 0.0019 24.0 6.6 51 98-169 30-80 (138)
59 2pn6_A ST1022, 150AA long hypo 47.9 20 0.0007 27.7 4.2 44 105-169 6-49 (150)
60 1fxk_C Protein (prefoldin); ar 47.9 57 0.002 25.3 6.9 52 170-221 69-124 (133)
61 1y0u_A Arsenical resistance op 47.7 22 0.00074 25.7 4.1 44 106-172 35-78 (96)
62 3cdh_A Transcriptional regulat 47.3 26 0.00089 26.6 4.7 52 98-170 39-90 (155)
63 2kko_A Possible transcriptiona 47.1 33 0.0011 25.5 5.2 50 106-177 29-80 (108)
64 3pqk_A Biofilm growth-associat 47.0 62 0.0021 23.3 6.6 50 106-177 27-78 (102)
65 2k4b_A Transcriptional regulat 46.4 14 0.00048 28.1 3.0 61 99-176 32-94 (99)
66 4ets_A Ferric uptake regulatio 46.2 34 0.0012 27.8 5.5 47 107-169 38-87 (162)
67 2dbb_A Putative HTH-type trans 46.1 21 0.00073 27.7 4.1 49 100-169 7-55 (151)
68 4hbl_A Transcriptional regulat 45.5 95 0.0033 23.4 7.8 52 98-170 37-88 (149)
69 2ia0_A Putative HTH-type trans 45.4 28 0.00095 28.3 4.9 50 99-169 14-63 (171)
70 2cyy_A Putative HTH-type trans 45.2 26 0.00089 27.3 4.5 49 100-169 5-53 (151)
71 3nmd_A CGMP dependent protein 44.7 77 0.0026 23.7 6.7 32 192-223 33-64 (72)
72 2gxg_A 146AA long hypothetical 44.7 92 0.0031 22.9 9.3 50 98-169 33-82 (146)
73 1xmk_A Double-stranded RNA-spe 44.5 34 0.0012 25.4 4.8 58 100-177 9-67 (79)
74 2w25_A Probable transcriptiona 44.0 31 0.0011 26.7 4.8 48 101-169 6-53 (150)
75 3k0l_A Repressor protein; heli 43.7 1.1E+02 0.0036 23.4 9.8 51 98-169 42-92 (162)
76 2hzt_A Putative HTH-type trans 43.5 20 0.0007 26.6 3.5 44 105-169 17-60 (107)
77 2bv6_A MGRA, HTH-type transcri 43.4 18 0.00062 27.0 3.2 51 98-169 33-83 (142)
78 3bja_A Transcriptional regulat 43.2 93 0.0032 22.6 7.9 51 98-169 29-79 (139)
79 2fsw_A PG_0823 protein; alpha- 42.9 12 0.0004 27.8 2.0 43 106-169 29-71 (107)
80 1t2k_D Cyclic-AMP-dependent tr 42.7 82 0.0028 21.8 6.5 36 187-222 24-59 (61)
81 2k48_A Nucleoprotein; viral pr 42.6 37 0.0012 27.3 4.9 42 172-213 22-63 (107)
82 3e6m_A MARR family transcripti 41.9 63 0.0021 24.8 6.2 52 98-170 49-100 (161)
83 3boq_A Transcriptional regulat 41.7 44 0.0015 25.3 5.2 52 98-170 43-95 (160)
84 2wt7_A Proto-oncogene protein 41.5 89 0.003 21.9 6.6 36 187-222 25-60 (63)
85 3bdd_A Regulatory protein MARR 40.8 39 0.0013 24.8 4.7 51 99-170 28-78 (142)
86 2zdi_C Prefoldin subunit alpha 40.8 66 0.0023 25.8 6.4 57 167-223 76-136 (151)
87 2lkp_A Transcriptional regulat 40.6 65 0.0022 23.7 5.9 50 106-177 36-87 (119)
88 2p5k_A Arginine repressor; DNA 40.4 75 0.0026 20.7 6.1 43 107-169 10-52 (64)
89 3oop_A LIN2960 protein; protei 40.2 1.1E+02 0.0038 22.6 8.6 52 98-170 33-84 (143)
90 1zxa_A CGMP-dependent protein 40.1 52 0.0018 24.2 5.1 24 199-222 32-55 (67)
91 2kif_A O6-methylguanine-DNA me 40.0 18 0.0006 28.6 2.7 25 102-126 3-30 (108)
92 1j5y_A Transcriptional regulat 39.9 45 0.0015 27.2 5.3 52 106-178 25-78 (187)
93 3ghg_C Fibrinogen gamma chain; 39.7 52 0.0018 31.6 6.4 9 121-129 24-32 (411)
94 3bj6_A Transcriptional regulat 39.7 1.1E+02 0.0039 22.6 9.6 52 98-170 36-87 (152)
95 2wte_A CSA3; antiviral protein 39.6 32 0.0011 30.0 4.6 52 98-170 148-199 (244)
96 1z7u_A Hypothetical protein EF 39.3 1.1E+02 0.0039 22.5 7.3 44 105-169 25-68 (112)
97 3gva_A Alkyltransferase-like p 39.3 17 0.0006 29.0 2.6 26 101-126 4-32 (116)
98 2e1c_A Putative HTH-type trans 39.1 40 0.0014 27.3 4.9 50 99-169 24-73 (171)
99 3bro_A Transcriptional regulat 38.3 1.1E+02 0.0039 22.2 9.0 51 98-169 30-82 (141)
100 3u2r_A Regulatory protein MARR 37.5 1.4E+02 0.0047 22.9 8.0 51 98-169 42-94 (168)
101 2fa5_A Transcriptional regulat 36.4 1.4E+02 0.0047 22.5 11.1 52 98-170 45-96 (162)
102 2frh_A SARA, staphylococcal ac 35.9 88 0.003 23.4 6.1 51 98-169 33-85 (127)
103 2fbk_A Transcriptional regulat 35.4 1E+02 0.0036 24.1 6.7 52 98-170 65-119 (181)
104 2heo_A Z-DNA binding protein 1 34.6 61 0.0021 22.4 4.6 49 103-172 11-60 (67)
105 3i4p_A Transcriptional regulat 34.2 45 0.0015 26.5 4.4 46 103-169 4-49 (162)
106 1yyv_A Putative transcriptiona 33.1 21 0.00071 28.0 2.1 43 106-169 39-81 (131)
107 1r7j_A Conserved hypothetical 33.0 1.1E+02 0.0038 22.7 6.1 27 149-175 32-58 (95)
108 3g2b_A Coenzyme PQQ synthesis 32.7 37 0.0013 25.8 3.4 56 98-168 39-94 (95)
109 2jsc_A Transcriptional regulat 32.4 45 0.0015 25.1 3.9 50 106-177 25-76 (118)
110 2x4h_A Hypothetical protein SS 32.0 65 0.0022 24.1 4.7 42 110-172 25-66 (139)
111 3f6o_A Probable transcriptiona 31.4 88 0.003 23.3 5.4 50 106-177 22-73 (118)
112 3nrv_A Putative transcriptiona 31.1 1.6E+02 0.0055 21.8 10.6 52 98-170 36-87 (148)
113 1on2_A Transcriptional regulat 30.8 60 0.002 24.5 4.4 47 104-171 10-56 (142)
114 4emc_A Monopolin complex subun 30.7 1.4E+02 0.0046 26.1 7.0 41 186-226 21-61 (190)
115 1wlq_A Geminin; coiled-coil; 2 30.2 1.3E+02 0.0044 23.1 6.0 20 205-224 61-80 (83)
116 1wrj_A Methylated-DNA--protein 29.8 26 0.0009 29.2 2.3 29 98-126 67-98 (156)
117 2xdj_A Uncharacterized protein 29.5 1.6E+02 0.0055 22.1 6.5 32 185-216 27-58 (83)
118 3f3x_A Transcriptional regulat 29.3 1E+02 0.0034 22.9 5.4 49 99-169 34-82 (144)
119 2pex_A Transcriptional regulat 28.5 80 0.0027 23.7 4.7 52 98-170 43-94 (153)
120 3hsr_A HTH-type transcriptiona 27.3 1.4E+02 0.0049 22.1 6.0 52 98-170 32-83 (140)
121 1mkm_A ICLR transcriptional re 27.2 2.8E+02 0.0095 23.3 8.8 50 105-175 11-62 (249)
122 4etp_A Kinesin-like protein KA 27.0 1.3E+02 0.0045 28.1 6.8 33 185-217 10-42 (403)
123 3tso_C RAB11 family-interactin 26.8 1.6E+02 0.0053 22.3 5.8 29 188-216 17-45 (75)
124 2f2e_A PA1607; transcription f 26.4 77 0.0026 24.9 4.4 43 105-169 27-69 (146)
125 2r3s_A Uncharacterized protein 25.7 56 0.0019 27.9 3.7 48 106-175 30-77 (335)
126 1r1t_A Transcriptional repress 25.1 1.1E+02 0.0037 23.4 4.9 49 106-176 50-100 (122)
127 3dp7_A SAM-dependent methyltra 24.8 79 0.0027 28.0 4.6 48 107-175 40-88 (363)
128 2h09_A Transcriptional regulat 24.7 1.5E+02 0.0052 22.6 5.8 48 102-170 40-87 (155)
129 2pg4_A Uncharacterized protein 24.6 99 0.0034 21.9 4.4 43 106-169 19-63 (95)
130 2l5g_B Putative uncharacterize 24.2 1.7E+02 0.0056 19.9 5.0 30 184-213 8-37 (42)
131 3b73_A PHIH1 repressor-like pr 24.0 71 0.0024 24.8 3.7 55 100-173 11-65 (111)
132 3ajw_A Flagellar FLIJ protein; 23.9 2.3E+02 0.008 21.6 6.8 41 186-226 82-122 (150)
133 1fxk_A Prefoldin; archaeal pro 23.9 2.1E+02 0.0073 20.9 6.8 67 150-219 30-99 (107)
134 2g9w_A Conserved hypothetical 23.8 2.4E+02 0.0082 21.4 8.7 55 99-170 6-61 (138)
135 3eco_A MEPR; mutlidrug efflux 23.4 2.2E+02 0.0075 20.7 8.9 51 98-169 27-79 (139)
136 1nkp_B MAX protein, MYC proto- 23.3 1E+02 0.0034 22.4 4.2 30 185-214 47-76 (83)
137 4ham_A LMO2241 protein; struct 23.2 2.5E+02 0.0086 21.4 7.5 58 118-175 15-77 (134)
138 1mgt_A MGMT, protein (O6-methy 23.2 47 0.0016 28.2 2.7 29 98-126 87-119 (174)
139 2xrn_A HTH-type transcriptiona 23.1 1.1E+02 0.0038 25.8 5.1 46 105-171 9-55 (241)
140 3neu_A LIN1836 protein; struct 22.9 2.5E+02 0.0086 21.3 6.7 60 116-175 12-76 (125)
141 3jw4_A Transcriptional regulat 22.7 2.4E+02 0.0081 20.9 7.6 52 98-170 37-90 (148)
142 4a5n_A Uncharacterized HTH-typ 22.2 53 0.0018 26.1 2.7 44 105-169 29-72 (131)
143 2wq1_A General control protein 21.8 1.4E+02 0.0048 19.3 4.1 21 208-228 9-29 (33)
144 2aze_B Transcription factor E2 21.8 1.3E+02 0.0046 23.3 4.9 35 185-223 6-41 (106)
145 3fm5_A Transcriptional regulat 21.7 2.5E+02 0.0086 20.8 8.4 50 99-169 36-86 (150)
146 1lwu_C Fibrinogen gamma chain; 21.4 1.9E+02 0.0063 26.8 6.5 9 252-260 101-109 (323)
147 2zqm_A Prefoldin beta subunit 21.3 2.5E+02 0.0087 20.7 7.8 66 151-219 36-104 (117)
148 3hug_A RNA polymerase sigma fa 21.3 81 0.0028 22.5 3.3 33 114-163 51-83 (92)
149 1sfe_A ADA O6-methylguanine-DN 21.0 47 0.0016 28.2 2.3 26 101-126 95-123 (180)
150 2wvr_A Geminin; DNA replicatio 20.8 82 0.0028 27.9 3.8 37 187-223 117-156 (209)
151 3mq7_A Bone marrow stromal ant 20.8 2.6E+02 0.0088 22.8 6.5 26 187-212 73-98 (121)
152 2ek5_A Predicted transcription 20.8 1.5E+02 0.0051 23.0 5.0 59 117-175 4-67 (129)
153 2jt1_A PEFI protein; solution 20.7 1.1E+02 0.0036 22.4 3.9 43 106-169 8-56 (77)
154 3i53_A O-methyltransferase; CO 20.7 1.2E+02 0.0043 26.0 5.0 48 106-175 29-77 (332)
155 2o8x_A Probable RNA polymerase 20.5 59 0.002 21.4 2.3 33 114-163 29-61 (70)
156 2ip2_A Probable phenazine-spec 20.4 1.3E+02 0.0043 25.8 5.0 47 107-175 33-80 (334)
157 3gpv_A Transcriptional regulat 20.4 1.3E+02 0.0045 23.9 4.8 22 105-126 3-26 (148)
158 2wvr_A Geminin; DNA replicatio 20.4 2.3E+02 0.0078 25.0 6.5 37 193-229 116-152 (209)
159 1z91_A Organic hydroperoxide r 20.2 62 0.0021 24.0 2.6 52 98-170 36-87 (147)
160 4etp_A Kinesin-like protein KA 20.2 1.8E+02 0.0063 27.1 6.3 35 186-220 4-38 (403)
No 1
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=100.00 E-value=7.5e-38 Score=247.95 Aligned_cols=93 Identities=69% Similarity=1.100 Sum_probs=78.5
Q ss_pred CCCCCcCCcchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 90 AGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 90 a~~~~k~~kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..++|++++|||||||+|||||+++++|||+||||+||+||..++++. +.+++||++|+|||||||||||+|||||+|
T Consensus 2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K 79 (95)
T 1cf7_B 2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISK 79 (95)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCC
T ss_pred CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceec
Confidence 356799999999999999999999999999999999999999887654 567899999999999999999999999999
Q ss_pred cCCeeeeccCCCCCh
Q 024762 170 DKKEIQWKGLPRTSL 184 (263)
Q Consensus 170 ~Kk~I~W~G~~~~s~ 184 (263)
+||.|+|+|+|.++.
T Consensus 80 ~k~~i~W~g~~~~~~ 94 (95)
T 1cf7_B 80 EKKEIKWIGLPTNSA 94 (95)
T ss_dssp CSSCEEBCCCC----
T ss_pred CCCEEEEecCCcccc
Confidence 999999999998764
No 2
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=99.90 E-value=3.4e-24 Score=182.34 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCccccceEEEEcCCCceEEeEe
Q 024762 182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSG---NAPSGGVALPFILVQVDIRQLFSCIM 258 (263)
Q Consensus 182 ~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~~~~---~~ps~~I~LPFIlV~T~~~tvI~C~i 258 (263)
++.++|+.|++|+.++++||++|+++||||+.|+++|+||++||+++++++ ++|+++|+||||||+|+++|+|||+|
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI 81 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI 81 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence 578999999999999999999999999999999999999999999998643 45678999999999999999999999
Q ss_pred ee
Q 024762 259 AS 260 (263)
Q Consensus 259 ss 260 (263)
|.
T Consensus 82 Se 83 (155)
T 2aze_A 82 SN 83 (155)
T ss_dssp CT
T ss_pred ec
Confidence 85
No 3
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.69 E-value=1.4e-17 Score=126.60 Aligned_cols=65 Identities=32% Similarity=0.548 Sum_probs=55.9
Q ss_pred CCcchhhHHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCC
Q 024762 96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK 172 (263)
Q Consensus 96 ~~kGLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk 172 (263)
..++|..++.++++.+++ .+.++++++|++|.- +.|||||||+|||||||||+| .||
T Consensus 8 ~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~k~ 67 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSKN 67 (76)
T ss_dssp TTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEETT
T ss_pred ccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCC--------------------ccceehhhHHHHHhHhcceeecCCC
Confidence 347999999999999998 568999999999731 269999999999999999999 899
Q ss_pred eeeeccCC
Q 024762 173 EIQWKGLP 180 (263)
Q Consensus 173 ~I~W~G~~ 180 (263)
.|+|+|++
T Consensus 68 ~~~W~G~~ 75 (76)
T 1cf7_A 68 SIQWKGVG 75 (76)
T ss_dssp EEEEC---
T ss_pred cEEEeCCC
Confidence 99999985
No 4
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.91 E-value=2.2 Score=30.42 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=42.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
-||-.--..|+..+...+..|..|+|+.+- .-+-.||.+++.|+.-|+|.+.
T Consensus 16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEEE
Confidence 355556677888888888899999999871 2357899999999999999983
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.30 E-value=2.4 Score=31.61 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcC---CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeeccC
Q 024762 104 SMKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGL 179 (263)
Q Consensus 104 S~KVcekVk~kg---~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G~ 179 (263)
-.+|++.+++.+ .+|+.|+|.+|= .-|+-|...|.-|+.-|+|.+ .++.=.|.-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg---------------------vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~ 70 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG---------------------TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEecCCCCCeeEEe
Confidence 467999999999 999999999972 235667777778999999998 5555667533
No 6
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.06 E-value=7.2 Score=30.05 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=42.4
Q ss_pred cchhhHHHHHHHHHHhcCC--CcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGR--TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~--TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
-||-..-..|+..+.+.+. .|-.|||+.|- .-+-.||-+|+.|+..|+|.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~---------------------~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLK---------------------LDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEee
Confidence 4666667788888887776 89999999872 2367899999999999999984
No 7
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.99 E-value=2.4 Score=30.92 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHHHHhcC---CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeecc
Q 024762 105 MKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178 (263)
Q Consensus 105 ~KVcekVk~kg---~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G 178 (263)
.+|++.+++.+ .+|+.|+|..|= .-++.|.-.|.-|+.-|+|.+ ..+.=.|.-
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lg---------------------vs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLG---------------------TPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHC---------------------CCHHHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 67899999999 999999999972 224666777778999999998 444466753
No 8
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.53 E-value=2.8 Score=29.67 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|.+.+.+. +..|-.||++.|-.... ..-+--||-.|+.|+..|+|.+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~----------------~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGE----------------EIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTC----------------CCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC----------------CCCHhhHHHHHHHHHHCCCeEE
Confidence 4578888765 68999999998865421 1235679999999999999998
No 9
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=77.89 E-value=17 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|.+|+|+.+- .-+-.|+-+++-|+.-|+|++
T Consensus 27 ~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWS---------------------LPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEee
Confidence 466666677888888888899999998862 225678999999999999998
No 10
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=75.51 E-value=1.4 Score=40.38 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=27.3
Q ss_pred ccchhhhhhHHHHhhhcccccc-cCCeeeeccCCC
Q 024762 148 KNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPR 181 (263)
Q Consensus 148 KniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G~~~ 181 (263)
..-|.+|||+|+.|+..|+|+. ..+...|.-.|+
T Consensus 43 gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p 77 (342)
T 3qph_A 43 GIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSP 77 (342)
T ss_dssp TSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCH
Confidence 4568899999999999999998 556667765553
No 11
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=74.44 E-value=5.6 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc----cCCeeeec
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK----DKKEIQWK 177 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K----~Kk~I~W~ 177 (263)
.+|.+.+.+.+..|..|+|+.|= .-+.-|+..|+.|+..|+|.+ .+....|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lg---------------------vs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~ 58 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALA---------------------VTDYQARYYLLLLEKAGMVQRSPLRRGMATYWF 58 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEE
Confidence 46778888888999999999861 235678999999999999994 34455664
No 12
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.95 E-value=9.4 Score=26.86 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeee
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W 176 (263)
+|-.--..|.+.+...+..|-.|||+.|-.+ . ..-+--||.+|+.|+.-|+|++ +++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~-~----------------~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKT-S----------------TWSPKTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHH-S----------------CCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhc-C----------------CccHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 4544556688888888999999999998533 0 0224679999999999999998 4555544
No 13
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.55 E-value=19 Score=26.93 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=42.7
Q ss_pred cchhhHHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||..--..|...+.. .+..|..|+|+.|- .-+-.|+.+++-|+.-|+|++.
T Consensus 31 ~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~---------------------i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRLGGDVTPSELAAAER---------------------MRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHhC---------------------CChhhHHHHHHHHHHCCCEeeC
Confidence 5777777788888888 88999999998751 2356789999999999999984
No 14
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=71.83 E-value=28 Score=25.74 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=41.4
Q ss_pred cchhhHHHHHHHHHH-hcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc----CC
Q 024762 98 RGLRQFSMKVCEKVE-SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KK 172 (263)
Q Consensus 98 kGLR~fS~KVcekVk-~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~----Kk 172 (263)
.||-.--.+|...+. ..+..|..|+|+.|- .-+-.||.+++.|+..|+|++. .+
T Consensus 22 ~gl~~~~~~il~~L~~~~~~~t~~ela~~l~---------------------~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLSDKPLTISDIMEELK---------------------ISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred cCCChhHHHHHHHHHHcCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 345555555666664 456788888888762 2356899999999999999983 23
Q ss_pred eeeeccC
Q 024762 173 EIQWKGL 179 (263)
Q Consensus 173 ~I~W~G~ 179 (263)
+..+..+
T Consensus 81 r~~~~~~ 87 (152)
T 1ku9_A 81 KNYYEAV 87 (152)
T ss_dssp SCEEEEC
T ss_pred eEEEeec
Confidence 4445544
No 15
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=71.81 E-value=3 Score=31.69 Aligned_cols=57 Identities=12% Similarity=0.281 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeecc
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 178 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G 178 (263)
......+|++.+++.+ .|+.|+|.+|= .....++||+| -|+.-|+|.+ ..+--.|.=
T Consensus 15 ~~~~~~~IL~lL~~~g-~sa~eLAk~Lg-----------------iSk~aVr~~L~----~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG-ATAAQLTRQLN-----------------MEKREVNKALY----DLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp SHHHHHHHHHHHSSST-EEHHHHHHHSS-----------------SCHHHHHHHHH----HHHHHTSSEECSSSSCEEES
T ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHHC-----------------cCHHHHHHHHH----HHHHCCCEEeCCCCCCccee
Confidence 3456678999999888 99999999862 11235566655 5999999999 788899973
No 16
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=70.76 E-value=22 Score=26.27 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeee
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQ 175 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~ 175 (263)
.||-.--..|+..+...+..|-.|||+.|-.+ ...-+-.||-+++.|+.-|+|++ +...+.
T Consensus 6 ~~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~-----------------~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~ 68 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQ-----------------KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQ 68 (123)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHH-----------------CCCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHhCCCcCHHHHHHHHhcc-----------------CCCcHhhHHHHHHHHHHCCCeEEEecCCeEE
Confidence 45666667788888888999999999998543 01235689999999999999998 445555
Q ss_pred eccC
Q 024762 176 WKGL 179 (263)
Q Consensus 176 W~G~ 179 (263)
+.-+
T Consensus 69 ~~~l 72 (123)
T 1okr_A 69 YYSL 72 (123)
T ss_dssp EEES
T ss_pred EEEe
Confidence 4433
No 17
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=69.48 E-value=8.2 Score=27.29 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.+|...+...+..|..|+|+.|- .-+-.||-.|+.|+..|+|.+
T Consensus 19 ~~iL~~L~~~~~~~~~ela~~l~---------------------is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLD---------------------LTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 44667776778899999999861 224679999999999999996
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.60 E-value=16 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (263)
Q Consensus 186 ~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~ 223 (263)
.+.+|+..+.+..++|++|.+.+.+|+.+......+|+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667766666666666666666666655554444444
No 19
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=66.69 E-value=13 Score=28.11 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
||-.--..|+..+...+.+|-.|+|+.|- .-+-.|.-+++-|+.-|+|++
T Consensus 38 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLI---------------------ITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 55555566778888888889999888862 224678899999999999998
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.16 E-value=13 Score=26.05 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQ 214 (263)
Q Consensus 184 ~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q 214 (263)
..+++.|+.|...|+.++...++.++||..+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988888888887654
No 21
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=65.21 E-value=12 Score=29.05 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=41.6
Q ss_pred cchhhHHHH--HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMK--VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~K--VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|||.=..+ |.+.+.+ .+..|-.||.+.|-.+... .-+--||..|+.|+..|+|.|
T Consensus 5 ~g~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~----------------is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 5 AGVRSTRQRAAISTLLETLDDFRSAQELHDELRRRGEN----------------IGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp THHHHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHTTTSEEE
T ss_pred ccCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHhhHHHHHHHHHHCCCEEE
Confidence 566655444 7788865 4578998999888655211 235689999999999999999
No 22
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=64.92 E-value=37 Score=24.59 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.+|...+ ..+..+..|+|+.|- .-+--|+-.|+.|+..|+|.+
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~---------------------is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLP---------------------VSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSS---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-HcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeeE
Confidence 3466777 567789999888751 235679999999999999987
No 23
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=62.92 E-value=39 Score=25.83 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=39.5
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|.-+++-|+.-|+|++
T Consensus 46 ~~lt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 96 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYREDGINQESLSDYLK---------------------IDKGTTARAIQKLVDEGYVFR 96 (159)
T ss_dssp GTCCTTTHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 355555566777777788889999988862 235678889999999999998
No 24
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.47 E-value=43 Score=24.53 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|+.+++-|+.-|+|++
T Consensus 25 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHREPGIKQDELATFFH---------------------VDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp GTCCHHHHHHHHHHHHSTTCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 466666677888888889999999999861 225678999999999999998
No 25
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=62.08 E-value=8.6 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|.+.+.+.+..|-.||.+.|-.++. ..-+--||-.|+.|+..|||.|
T Consensus 23 ~Il~~l~~~~h~ta~ei~~~l~~~~~----------------~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 23 LVLEAVDTLEHATPDDILGEVRKTAS----------------GINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHHTTCT----------------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhCC----------------CCCHhHHHHHHHHHHHCCcEEE
Confidence 37787777667777777777643311 1235689999999999999999
No 26
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=60.98 E-value=23 Score=25.38 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..+..|++.+|...+ ..-+--|+-+++-|+..|+|++
T Consensus 4 ~~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l-----------------~is~~tvs~~l~~Le~~gli~r 58 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYDNEGIATYDLYKKVNAEF-----------------PMSTATFYDAKKFLIQEGFVKE 58 (99)
T ss_dssp CSSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTS-----------------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 345555566777887888899989866553221 1335778999999999999998
No 27
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.38 E-value=11 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.2
Q ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|.+.+.+ .+..|-.||.+.|-.+.. ..-+--||-.|+.|+..|||.+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~----------------~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFP----------------NMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCT----------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCC----------------CCChhhHHHHHHHHHHCCCEEE
Confidence 37777765 456788788877754311 1235689999999999999999
No 28
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.14 E-value=32 Score=24.38 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (263)
Q Consensus 186 ~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~ 223 (263)
.++.|..+...|..+-...+..+..|......|++|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777888888888888763
No 29
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.99 E-value=13 Score=29.01 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|.+.+.+. +..|-.||.+.|-.+... .-+--||-.|+.|+..|||.+
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGED----------------VGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC----------------CCHHHHHHHHHHHHHCCcEEE
Confidence 377888753 578888888887655221 234679999999999999999
No 30
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.88 E-value=39 Score=24.83 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|+.+++-|+.-|+|++
T Consensus 32 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~~vs~~l~~Le~~glv~r 82 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQGEMESYQLANQAC---------------------ILRPSMTGVLARLERDGIVRR 82 (142)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 456666677888888888899999988751 234679999999999999998
No 31
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.68 E-value=50 Score=24.38 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..|..|+|+.+- .-+-.|+.+++-|+.-|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~---------------------~s~~tvs~~l~~L~~~glv~r 79 (145)
T 2a61_A 29 FGITPAQFDILQKIYFEGPKRPGELSVLLG---------------------VAKSTVTGLVKRLEADGYLTR 79 (145)
T ss_dssp HTCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCchhHHHHHHHHHHCCCeee
Confidence 456666677888888888899999998862 234678999999999999998
No 32
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.71 E-value=7.6 Score=28.68 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.+|.+.|++++..+-+|+|++|- ..+..||| -|+.|+..|+|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~-----------------VS~~TIRr----dL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLN-----------------TPQPMINA----MLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTT-----------------CCHHHHHH----HHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC-----------------cCHHHHHH----HHHHHHHCCCEEEe
Confidence 35789999999999999988862 12346665 47899999999884
No 33
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.33 E-value=53 Score=24.21 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=39.5
Q ss_pred cchhhHHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+ ...+.+|..|+|+.|- .-+-.|+.+++-|+.-|+|++.
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~t~~~la~~l~---------------------~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 33 LGLSQARWLVLLHLARHRDSPTQRELAQSVG---------------------VEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHhC---------------------CChhhHHHHHHHHHHCCCeeec
Confidence 45555555677777 6778888888888761 2356789999999999999983
No 34
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.31 E-value=67 Score=25.08 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=40.4
Q ss_pred cchhhHHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|+..+.. .+.+|..|+|+.|- .-+-.|.-+++-|+.-|+|++.
T Consensus 49 ~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~---------------------i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQLPPDQSQIQLAKAIG---------------------IEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp TTCCHHHHHHHHHHHHSCSSEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CCHhhHHHHHHHHHHCCCEEee
Confidence 4566666677777777 67789999998862 2356788899999999999984
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.11 E-value=15 Score=25.92 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.+|...+...+..|..|+|+.|- .-+--|+..|+.|+..|+|.+
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~---------------------is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITG---------------------LSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHC---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 35667777776889999988861 224678889999999999988
No 36
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=57.03 E-value=58 Score=24.68 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...|...+.+|..|+|+.|- .-+-.|+-+++.|+.-|+|++
T Consensus 40 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~Gli~r 90 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFGPKKMKEIAEFLS---------------------TTKSNVTNVVDSLEKRGLVVR 90 (154)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHTT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 466666667888888888999999999851 234678999999999999998
No 37
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.47 E-value=19 Score=28.81 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=39.1
Q ss_pred cchhhHHHH--HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMK--VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~K--VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|||.=..+ |.+.+.+ .+..|-.||.+.|-.+... .-+--||-.|+.|+..|||.+
T Consensus 21 ~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 21 NGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKN----------------TSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp CC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTT----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHhhHHHHHHHHHHCCcEEE
Confidence 455544333 7777765 4678888888888665221 224679999999999999999
No 38
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.88 E-value=54 Score=24.45 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..|..|+|+.|- .-+--|+-+++.|+.-|+|++
T Consensus 38 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMY---------------------LACSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCchhHHHHHHHHHHCCCeee
Confidence 466666667777887788899999998861 235678999999999999998
No 39
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.76 E-value=17 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=39.8
Q ss_pred CcchhhHHHH--HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 97 GRGLRQFSMK--VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 97 ~kGLR~fS~K--VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|||.=..+ |.+.+.+ .+..|-.||.+.|-.+... .-+--||-.|+.|+..|||.+
T Consensus 7 ~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 7 PVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDA----------------VGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC----------------CCHHHHHHHHHHHHHCCCEEE
Confidence 3566654444 7787766 4678888888887654211 235689999999999999999
No 40
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=54.97 E-value=60 Score=24.30 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|+..+...+..|..|+|+.|- .-+-.|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r 83 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERME---------------------VKPSAVTLMADRLEQKNLIAR 83 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEee
Confidence 345555556777777778888888888761 235678999999999999998
No 41
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=54.07 E-value=13 Score=26.76 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
+|...+.. +..|..|+|+.|- .-+..|+-.|+.|+..|+|.+
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~---------------------is~~tvs~~L~~L~~~Glv~~ 68 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQ---------------------LSQSALSQHLAWLRRDGLVTT 68 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhc-CCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEE
Confidence 45666655 8889999998871 224678999999999999987
No 42
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.76 E-value=15 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=36.2
Q ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|.+.+.+. +..|-.||.+.|-.++.. .-+--||-.|+.|+..|||.+
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~----------------is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEE----------------IGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCC----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCC----------------CCHHHHHHHHHHHHHCCcEEE
Confidence 377777653 578888888887655221 224679999999999999998
No 43
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=53.56 E-value=9.2 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
+|.+.|++.|..+-+|+|++|- ..+..||| -|+.|+..|+|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~-----------------VS~~TIRr----DL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQ-----------------TPQPLIDA----MLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTT-----------------CCHHHHHH----HHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHC-----------------cCHHHHHH----HHHHHHHCCCEEEE
Confidence 5789999999999999888852 12346655 47899999999983
No 44
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.25 E-value=29 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
||-.--..|+..+...+..|..|+|+.|- .-+-.|+-+++-|+.-|+|++
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTA---------------------MDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 66666677888888888899999888751 234678999999999999998
No 45
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=53.19 E-value=66 Score=23.76 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|..|+|+.|- .-+-.|+.+++-|+.-|+|.+
T Consensus 25 ~~lt~~~~~iL~~l~~~~~~t~~~la~~l~---------------------~s~~~vs~~l~~Le~~gli~r 75 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCENPGIIQEKIAELIK---------------------VDRTTAARAIKRLEEQGFIYR 75 (144)
T ss_dssp GTCTTTHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCcCcCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 456655667778888888899999998862 224678999999999999998
No 46
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=53.02 E-value=46 Score=23.29 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=37.2
Q ss_pred cchhhHHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..+...+ ...+..|-.|+|+.+- .-+--||.+|+.|+..|+|++.
T Consensus 17 ~~l~~~~~~~l~~l~~~~~~~t~~ela~~l~---------------------is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEIEKPITSEELADIFK---------------------LSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEee
Confidence 34444444444434 4478899999998761 3367899999999999999983
No 47
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=52.64 E-value=74 Score=24.15 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=42.0
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..|..|+|+.|- .-+-.|+-+++-|+.-|+|++
T Consensus 48 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKDGLPIGTLGIFAV---------------------VEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEe
Confidence 467666777888888888999999998862 225678999999999999998
No 48
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=51.94 E-value=20 Score=27.88 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.+-.++.+.++..+..|+.|+|+.|= .-+..|...++-|+..|+|.+-
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIK---------------------LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEE
Confidence 34567889999999999999999972 2246677888999999999873
No 49
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=51.55 E-value=82 Score=24.39 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=41.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
-||-.--..|...+...+..|-.|+|+.|- .-+--|+-+++-|+.-|+|++
T Consensus 41 ~~lt~~~~~iL~~L~~~~~~t~~eLa~~l~---------------------is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLG---------------------VQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 467666777888888888899999998861 235678889999999999998
No 50
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=51.54 E-value=19 Score=27.42 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccC
Q 024762 104 SMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (263)
Q Consensus 104 S~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~K 171 (263)
-.++...++..+..++.|+|+.|= .-+.-|+..++-|+..|+|.+..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLG---------------------ISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEeccc
Confidence 356778888889999999999871 22466788899999999998743
No 51
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=50.39 E-value=78 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccC
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~K 171 (263)
||-.--..|...+ ..+.+|-.|+|+.+- .-+-.|.-+++-|+.-|+|++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQG---------------------VNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHC---------------------SCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEeeC
Confidence 5555555677777 888899999888862 12345777999999999999743
No 52
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=49.87 E-value=11 Score=28.90 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
+|...+...+..+..|+|+.|- .-+-.|+-.|+.|+..|+|.+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~---------------------is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILG---------------------VTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEE
Confidence 5677777778899999998861 224678899999999999987
No 53
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=49.85 E-value=77 Score=23.55 Aligned_cols=52 Identities=6% Similarity=0.183 Sum_probs=41.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|-+|+|+.+- .-+-.|.-+++-|+.-|+|++.
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMC---------------------RDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC------------------------CHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEeec
Confidence 577777788889999989999999999872 1134688899999999999984
No 54
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=49.40 E-value=22 Score=28.03 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
|-..-.++.+.++..+..|+.|+|+.|= .-+..|+..++-|+.-|+|.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVA---------------------LSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEee
Confidence 5556678999999999999999999872 224567777899999999997
No 55
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=48.97 E-value=29 Score=25.51 Aligned_cols=50 Identities=10% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+. .+..+..|+|+.|- .-+--|+-.|+.|+..|+|.+ +++.+.|.
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~---------------------is~stvs~~L~~L~~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLN---------------------LSQSNVSHQLKLLKSVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555565 67789999888861 224678999999999999987 45544443
No 56
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=48.31 E-value=24 Score=27.48 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
|-..-.++.+.++..+..|+.|+|+.|= .-+..|+..++-|+.-|+|.+
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFG---------------------VSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHcCCcce
Confidence 5556678899999999999999999972 124566777899999999997
No 57
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.26 E-value=31 Score=21.17 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024762 187 IEELKAERLGLRNRIEKKTAYL 208 (263)
Q Consensus 187 ~~~Lk~E~~~l~erI~~Kk~~L 208 (263)
.++|-.|++.|.+++++.++.|
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888888877666655
No 58
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=48.00 E-value=56 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..|..|+|+.+- .-+-.|+.+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~la~~l~---------------------~~~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLS---------------------VDLGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHHC---------------------CChHHHHHHHHHHHHCCCEEe
Confidence 456655666777787778888888887651 235678999999999999998
No 59
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=47.92 E-value=20 Score=27.67 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.++...++..+..++.|+|+.|= .-+-.|+..++-|+..|+|.+
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIR---------------------IPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEEE
Confidence 56788899999999999999972 124567777899999999997
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.85 E-value=57 Score=25.31 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=27.7
Q ss_pred cCCeeeeccCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 170 DKKEIQWKGLPRT----SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNL 221 (263)
Q Consensus 170 ~Kk~I~W~G~~~~----s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknL 221 (263)
..+-+-|.|.+.. ....++-|+..+..+.++++.-++.+.++..+...+..-
T Consensus 69 ~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 69 TSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp TTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557789986522 223344455555555555555555555555555544433
No 61
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=47.69 E-value=22 Score=25.67 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCC
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk 172 (263)
+|.+.+ .+..+..|+|+.|- .-+--||..|+.|+..|+|.+.+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~---------------------is~~tv~~~L~~L~~~Glv~~~~g 78 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLS---------------------LSKKQLDYHLKVLEAGFCIERVGE 78 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHH--cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEECC
Confidence 466666 56788888888761 235678999999999999998444
No 62
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=47.26 E-value=26 Score=26.57 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|..|+|+.|- .-+-.|+-+++-|+.-|+|++.
T Consensus 39 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDNDAMMITRLAKLSL---------------------MEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHHCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEec
Confidence 455555566777777777788888887751 2356789999999999999984
No 63
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=47.09 E-value=33 Score=25.46 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+. .+..+..|+|+.|- .-+.-|+-.|+.|+..|+|++ +++...|.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lg---------------------is~stvs~~L~~L~~~GlV~~~~~gr~~~y~ 80 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATG---------------------MNLTTASANLQALKSGGLVEARREGTRQYYR 80 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHHTSEEEEEETTEEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555565 47788989888761 235679999999999999987 45555543
No 64
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=46.98 E-value=62 Score=23.28 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+. .+..+..|+|+.| . .-+-.|+..|..|+..|+|.+ .++.+.|.
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l--~-------------------is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (102)
T 3pqk_A 27 MLVCTLV-EGEFSVGELEQQI--G-------------------IGQPTLSQQLGVLRESGIVETRRNIKQIFYR 78 (102)
T ss_dssp HHHHHHH-TCCBCHHHHHHHH--T-------------------CCTTHHHHHHHHHHHTTSEEEECSSSCCEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHH--C-------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 4555564 4778999988886 1 123468889999999999987 44544443
No 65
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=46.37 E-value=14 Score=28.12 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeee
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W 176 (263)
||-.--..|.+.|-+++..|-.|||+.|-.+ ...-+--||-+|+-|+.-|+|++ +++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~-----------------~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y 94 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQE-----------------LEWSLATVKTLLGRLVKKEMLSTEKEGRKFVY 94 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGG-----------------GCCCHHHHHHHHHHHHHTTSCEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcc-----------------cCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEE
Confidence 4444444677777778899999998886321 01224679999999999999998 4454443
No 66
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.24 E-value=34 Score=27.82 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHH--hcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 107 VCEKVES-KGRTTYNEVADELVAE--FADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 107 VcekVk~-kg~TTYnEVAdeLV~e--~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
|.+.+.+ .+..|-.||.+.|-.+ ... .-+--||-.|+.|+..|||.|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~----------------is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLN----------------VGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGC----------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCC----------------CCHHHHHHHHHHHHHCCCEEE
Confidence 6676665 3577777777777654 221 224689999999999999999
No 67
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=46.11 E-value=21 Score=27.67 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
|-.+-.++.+.++..+..|+.|+|+.|= .-+..|...++-|+.-|+|.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILN---------------------TTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTT---------------------SCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 4455668899999999999999999861 224667778899999999986
No 68
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=45.51 E-value=95 Score=23.37 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|+..+...+..|-.|+|+.+- .-+--|.-+++-|+.-|+|++.
T Consensus 37 ~~lt~~q~~iL~~l~~~~~~~~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEENPQTLNSIGRHLD---------------------LSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp TTCCHHHHHHHHHHHHSSSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHHTSEEC-
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEeeC
Confidence 456555667777887788888988888862 2356788899999999999983
No 69
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=45.43 E-value=28 Score=28.26 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=39.9
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|--+-.++...++..+..|+.|+|+.|= .-+-.|...++-|+.-|+|.+
T Consensus 14 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lg---------------------lS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKDARLTISELSEQLK---------------------KPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEe
Confidence 35556678999999999999999999972 223556677899999999986
No 70
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=45.25 E-value=26 Score=27.31 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
|-..-.++.+.++..+..|+.|+|++|= .-+..|+..++-|+..|+|.+
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITG---------------------LAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHC---------------------SCHHHHHHHHHHHHHHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEE
Confidence 4455668899999999999999999971 123556777899999999987
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.68 E-value=77 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 192 AERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (263)
Q Consensus 192 ~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~ 223 (263)
+|+..++++|+.+...|++.+.....|++-+.
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666788888888888877777776653
No 72
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.66 E-value=92 Score=22.93 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+. .+..|..|+|+.|- .-+-.|+-+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~-~~~~~~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r 82 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS-DGPKTMAYLANRYF---------------------VTQSAITASVDKLEEMGLVVR 82 (146)
T ss_dssp TTCCHHHHHHHHHHT-TSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHh-cCCcCHHHHHHHhC---------------------CCchhHHHHHHHHHHCCCEEe
Confidence 345555556666666 77777777777641 235678999999999999998
No 73
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=44.49 E-value=34 Score=25.43 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeec
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~ 177 (263)
......+||+.++..|..|-.|+|++|--. -.|.+||- |+.|+.-|+|.+ .-++=.|.
T Consensus 9 ~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit----------------~~~aVr~h----L~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 9 MAEIKEKICDYLFNVSDSSALNLAKNIGLT----------------KARDINAV----LIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEHHHHHHHHCGG----------------GHHHHHHH----HHHHHHTTSEEEECSSSCEEE
T ss_pred chhHHHHHHHHHHHcCCcCHHHHHHHcCCC----------------cHHHHHHH----HHHHHHCCCEEecCCCCCCeE
Confidence 345567899999999999999999987311 12245555 556999999987 44444664
No 74
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=44.05 E-value=31 Score=26.75 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 101 RQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 101 R~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
-..-.++...++..+..|+.|+|+.|- .-+..|+..++-|+..|+|.+
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~lg---------------------~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRAG---------------------LSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEE
Confidence 344567888999999999999999972 224567778899999999975
No 75
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.72 E-value=1.1e+02 Score=23.44 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|-.|+|+.|- .-+--|.-+++-|+.-|+|++
T Consensus 42 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 92 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSF---------------------IKPQSANKILQDLLANGWIEK 92 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCGGGHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCcCeEe
Confidence 466666677888888888899999998872 224567889999999999998
No 76
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.50 E-value=20 Score=26.56 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|...+. .+..+++|+|+.|- ..-+..|+..|+.|+..|+|++
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~--------------------~is~~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMP--------------------NITQKMLTQQLRELEADGVINR 60 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCT--------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhc--------------------CCCHHHHHHHHHHHHHCCCEEE
Confidence 34555554 68899999988751 1235789999999999999998
No 77
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=43.37 E-value=18 Score=26.96 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+..|..|+|+.|- .-+-.|+.+++-|+.-|+|++
T Consensus 33 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~L~~~gli~r 83 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWDESPVNVKKVVTELA---------------------LDTGTVSPLLKRMEQVDLIKR 83 (142)
T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHTT---------------------CCTTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEEe
Confidence 355555566777888888888888888861 123468889999999999998
No 78
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=43.23 E-value=93 Score=22.61 Aligned_cols=51 Identities=4% Similarity=0.140 Sum_probs=40.5
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|+-+++-|+..|+|++
T Consensus 29 ~~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSMSKLIENMG---------------------CVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHCS---------------------SCCTTHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCeee
Confidence 467666777888888888899999988751 123568889999999999998
No 79
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=42.94 E-value=12 Score=27.83 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|...+. .+..+++|+|+.|- ..-+..|+..|+.|+..|+|++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~--------------------gis~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP--------------------GISEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcc--------------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 4445554 68899999988751 0224789999999999999998
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.66 E-value=82 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (263)
Q Consensus 187 ~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI 222 (263)
++.|+.+...|...-......+..|..+...|++++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555655555555543
No 81
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.64 E-value=37 Score=27.28 Aligned_cols=42 Identities=12% Similarity=0.321 Sum_probs=29.5
Q ss_pred CeeeeccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213 (263)
Q Consensus 172 k~I~W~G~~~~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~ 213 (263)
..+.|.|++.....++++|++|+...+.+|---+..|++-..
T Consensus 22 ~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 22 ENLYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999987776666544445544443
No 82
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=41.91 E-value=63 Score=24.76 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=39.3
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|-.|+|+.+- .-+--|.-+++-|+.-|+|++.
T Consensus 49 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGV---------------------MEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEee
Confidence 355555566777777778888888888751 2346788899999999999984
No 83
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=41.67 E-value=44 Score=25.29 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHH-HhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKV-ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekV-k~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||..--..|+..+ ...+.+|..|+|+.|- .-+-.|+-+++-|+.-|+|++.
T Consensus 43 ~~l~~~~~~iL~~L~~~~~~~~~~ela~~l~---------------------i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 43 TGLSLAKFDAMAQLARNPDGLSMGKLSGALK---------------------VTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HSCCHHHHHHHHHHHHCTTCEEHHHHHHHCS---------------------SCCSCHHHHHHHHHHHTSEEEC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEEee
Confidence 46666666777778 5677888888888751 1234578899999999999984
No 84
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.49 E-value=89 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 187 IEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLI 222 (263)
Q Consensus 187 ~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI 222 (263)
+++|+.+...|...-...+..+..|..+...|+.++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555555555555666666666666655
No 85
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=40.84 E-value=39 Score=24.84 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
||-.--..|...+...+.+|..|+|+.|- .-+-.|+.+++-|+.-|+|.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~---------------------is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQ---------------------IDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEec
Confidence 55555566777787778889989888761 2346788999999999999983
No 86
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.83 E-value=66 Score=25.75 Aligned_cols=57 Identities=21% Similarity=0.133 Sum_probs=32.0
Q ss_pred ccccCCeeeeccCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 167 ISKDKKEIQWKGLPRT----SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQ 223 (263)
Q Consensus 167 I~K~Kk~I~W~G~~~~----s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~ 223 (263)
|....+-+-|.|.+.- .....+.|+..+..+...++.-.+.+.++..+...+..-++
T Consensus 76 i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 76 IVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp CSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788887532 22334445555555566666666666666666555544443
No 87
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=40.60 E-value=65 Score=23.70 Aligned_cols=50 Identities=14% Similarity=0.267 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+.+ +..+..|+|+.|- .-+--|+-.|+.|+..|+|.+ +++.+.+.
T Consensus 36 ~il~~L~~-~~~s~~ela~~l~---------------------is~stvsr~l~~Le~~Glv~~~~~~r~~~~~ 87 (119)
T 2lkp_A 36 MILTQLRN-GPLPVTDLAEAIG---------------------MEQSAVSHQLRVLRNLGLVVGDRAGRSIVYS 87 (119)
T ss_dssp HHHHHHHH-CCCCHHHHHHHHS---------------------SCHHHHHHHHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHH-CCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEecCCEEEEE
Confidence 45555655 7789999888861 234678889999999999987 45555443
No 88
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.35 E-value=75 Score=20.72 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
+...+.+.+..|-.|+++.|-.+. ...-.+-||-.|+ .+|+| |
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~----------------~~vs~~Tv~R~L~---~lg~v-~ 52 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDG----------------YKVTQATVSRDIK---ELHLV-K 52 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTT----------------CCCCHHHHHHHHH---HHTCE-E
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC----------------CCcCHHHHHHHHH---HcCCE-E
Confidence 456778889999999999986441 1133567887777 55677 5
No 89
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=40.19 E-value=1.1e+02 Score=22.60 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|+-+++-|+.-|+|++.
T Consensus 33 ~~lt~~~~~iL~~l~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANEPISQKEIALWTK---------------------KDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSSCHHHHHHHHHHHHHSSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CCHhhHHHHHHHHHHCCCeecc
Confidence 567666677888888889999999999872 2256788999999999999983
No 90
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.06 E-value=52 Score=24.22 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 199 NRIEKKTAYLQELEDQFVGLQNLI 222 (263)
Q Consensus 199 erI~~Kk~~LqEL~~Q~~alknLI 222 (263)
..+..|.+.+++|..+..-|+.++
T Consensus 32 ~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 32 KRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555444
No 91
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=40.02 E-value=18 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHh---cCCCcHHHHHHHH
Q 024762 102 QFSMKVCEKVES---KGRTTYNEVADEL 126 (263)
Q Consensus 102 ~fS~KVcekVk~---kg~TTYnEVAdeL 126 (263)
-|-.+|++.|.+ -.++||.+||..|
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~ 30 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMA 30 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHh
Confidence 478899999988 4579999999876
No 92
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.89 E-value=45 Score=27.21 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccc-ccccCCeeeecc
Q 024762 106 KVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDI-ISKDKKEIQWKG 178 (263)
Q Consensus 106 KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~l-I~K~Kk~I~W~G 178 (263)
++.+.+++. +..|..|+|++|= .-+|-||.-++.|+..|+ |......|.+..
T Consensus 25 ~Il~~L~~~~~~~s~~eLa~~l~---------------------vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~ 78 (187)
T 1j5y_A 25 SIVRILERSKEPVSGAQLAEELS---------------------VSRQVIVQDIAYLRSLGYNIVATPRGYVLAG 78 (187)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHT---------------------SCHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHHHHHcCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEECCEEEECC
Confidence 467778765 4599999999871 346778888889999999 877666666654
No 93
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=39.71 E-value=52 Score=31.59 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=6.5
Q ss_pred HHHHHHHHH
Q 024762 121 EVADELVAE 129 (263)
Q Consensus 121 EVAdeLV~e 129 (263)
+|||-|+.-
T Consensus 24 gl~d~L~ky 32 (411)
T 3ghg_C 24 GIADFLSTY 32 (411)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 778887754
No 94
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=39.67 E-value=1.1e+02 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|+..+...+.+|-.|+|+.|- .-+-.|+.+++-|+.-|+|++.
T Consensus 36 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQ---------------------MKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCeeec
Confidence 456656667777887778888888888762 2356788999999999999983
No 95
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=39.65 E-value=32 Score=30.01 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.8
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||......|.+.+.+.+.+|..|+|+.|- .-+-.|+.+++.|+..|+|++.
T Consensus 148 ~~L~~~~~~IL~~L~~~~~~s~~eLA~~lg---------------------lsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKMLD---------------------KSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEe
Confidence 367777788889988889999999999872 2367799999999999999995
No 96
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=39.29 E-value=1.1e+02 Score=22.53 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|...+.. +.+++.|+|+.|- ..-+-.|+..|+.|+..|+|++
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l~--------------------~is~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRALD--------------------GITQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHST--------------------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHh-CCCCHHHHHHHhc--------------------cCCHHHHHHHHHHHHHCCCEEE
Confidence 345555553 7899999998861 1335789999999999999998
No 97
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=39.28 E-value=17 Score=29.04 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHh---cCCCcHHHHHHHH
Q 024762 101 RQFSMKVCEKVES---KGRTTYNEVADEL 126 (263)
Q Consensus 101 R~fS~KVcekVk~---kg~TTYnEVAdeL 126 (263)
--|-.+|++.|.+ -.++||.|||..|
T Consensus 4 t~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~ 32 (116)
T 3gva_A 4 DEFYTKVYDAVCEIPYGKVSTYGEIARYV 32 (116)
T ss_dssp HHHHHHHHHHHTTSCTTCBBCHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCCCCeEeHHHHHHHh
Confidence 3588899999988 4699999999885
No 98
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=39.13 E-value=40 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=39.4
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|-..-.++.+.++..+..++.|+|++|= .-...|+.-++-|+..|+|.+
T Consensus 24 ~ld~~d~~IL~~L~~~~~~s~~eLA~~lg---------------------lS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITG---------------------LAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEe
Confidence 35566778999999999999999999872 113445566789999999987
No 99
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=38.32 E-value=1.1e+02 Score=22.24 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHhcC--CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg--~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+ .+|..|+|+.|- .-+--|+.+++-|+.-|+|++
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~---------------------~~~~tvs~~l~~Le~~Gli~r 82 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFS---------------------IKSSTATVLLQRMEIKKLLYR 82 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC---------------------CCcchHHHHHHHHHHCCCEEe
Confidence 355555566777777776 788888888762 224678999999999999998
No 100
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=37.50 E-value=1.4e+02 Score=22.93 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=36.2
Q ss_pred cchhhHHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+... +.+|.+|+|+.|- .-+--|.-+++-|+.-|+|++
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 94 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLI---------------------SRAPDITRLIDRLDDRGLVLR 94 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC------------------------CTHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCEee
Confidence 45555556667777664 4788888887752 223468889999999999998
No 101
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=36.37 E-value=1.4e+02 Score=22.53 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=39.9
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+..|..|+|+.|- .-+-.|+-+++-|+.-|+|++.
T Consensus 45 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~---------------------is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 45 YGMAIPEWRVITILALYPGSSASEVSDRTA---------------------MDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEeee
Confidence 456666667777787788888888888752 2346789999999999999984
No 102
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=35.90 E-value=88 Score=23.37 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred cchhhHHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|+..+... +..|-+|+|+.|- .-+-.|.-+++-|+.-|+|++
T Consensus 33 ~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLN---------------------YKQPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSS---------------------SHHHHHHHHHHHHHHTTSSCC
T ss_pred cCCCHHHHHHHHHHHhccCCCcCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEe
Confidence 34555555566666665 6677777776642 335678899999999999998
No 103
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=35.36 E-value=1e+02 Score=24.11 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.0
Q ss_pred cchhhHHHHHHHHHHhcCC---CcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGR---TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~---TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+. .|..|+|+.|- .-+--|+-+++-|+.-|+|++.
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~---------------------is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALAA---------------------ISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCS---------------------CCSGGGSSHHHHHHHHTSEECC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCcCEEec
Confidence 4566666667777777664 78888887641 2245678899999999999984
No 104
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=34.65 E-value=61 Score=22.44 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhc-CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCC
Q 024762 103 FSMKVCEKVESK-GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (263)
Q Consensus 103 fS~KVcekVk~k-g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk 172 (263)
.-.+|.+.+.+. ...+..|+|+.|= .-|.-|+-+++.|+.-|+|...+.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lg---------------------lsr~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQ---------------------VPKKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHC---------------------SCHHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEecCCC
Confidence 345688888876 4689999999861 337889999999999999987433
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.25 E-value=45 Score=26.48 Aligned_cols=46 Identities=7% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 103 FSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 103 fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
+=.++.+.+++.+..+|.|+|++|= .-.-.|..-++-|+.-|+|.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg---------------------~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVG---------------------LSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeee
Confidence 4467889999999999999999971 112344555788999999987
No 106
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=33.13 E-value=21 Score=27.98 Aligned_cols=43 Identities=7% Similarity=0.168 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|...+. .+..+++|+|+.|- ..-+.-|+..|+.|+..|||++
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~--------------------gis~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMG--------------------GVSEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHST--------------------TCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHhc--------------------cCCHHHHHHHHHHHHHCCcEEE
Confidence 3444554 78899999998861 0234778999999999999998
No 107
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=33.02 E-value=1.1e+02 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.9
Q ss_pred cchhhhhhHHHHhhhcccccccCCeee
Q 024762 149 NIRRRVYDALNVLMAMDIISKDKKEIQ 175 (263)
Q Consensus 149 niKRRVYDalNVL~ai~lI~K~Kk~I~ 175 (263)
.--|.+-..++.|+.-|+|++....+.
T Consensus 32 ls~~~~~~~l~~L~~~GLI~~~~~~~~ 58 (95)
T 1r7j_A 32 LSYALTGRYIKMLMDLEIIRQEGKQYM 58 (95)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred cCHHHHHHHHHHHHHCCCeEEECCeeE
Confidence 345889999999999999999655544
No 108
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=32.72 E-value=37 Score=25.77 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIIS 168 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~ 168 (263)
-.|...+.-|++.+ .|..|-.||+++|.++|..+ ...+..+|..-|..|..-|+|+
T Consensus 39 i~Ln~~a~~Iw~l~--DG~rtv~eIv~~L~~~y~~~-------------~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 39 VELDDIALVVAQRY--DGTQSLAQIAQTLAAEFDAD-------------ASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCCCTHHHHHHHHC--CSSSCHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred eecCHHHHHHHHHc--cCCCCHHHHHHHHHHHcCCc-------------HHHHHHHHHHHHHHHHHCcCEe
Confidence 45777777787764 78899999999999998642 3467889999999999888875
No 109
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=32.38 E-value=45 Score=25.13 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+. .+..+..|+|+.|- .-+--|+-.|+.|+..|+|.+ +++.+.|.
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lg---------------------is~stvs~~L~~L~~~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLG---------------------LTRSNVSNHLSCLRGCGLVVATYEGRQVRYA 76 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHS---------------------SCHHHHHHHHHHHTTTTSEEEEECSSSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCceEEEEECCEEEEE
Confidence 4555554 45677778777651 235778999999999999987 45555554
No 110
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=31.99 E-value=65 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCC
Q 024762 110 KVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172 (263)
Q Consensus 110 kVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk 172 (263)
..+..+..|..|+|+.|- .-+--|+.+++.|+.-|+|.+..+
T Consensus 25 l~~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~Le~~Gli~r~~~ 66 (139)
T 2x4h_A 25 YNDSGEGAKINRIAKDLK---------------------IAPSSVFEEVSHLEEKGLVKKKED 66 (139)
T ss_dssp HHTTTSCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHhcCCCcCHHHHHHHhC---------------------CChHHHHHHHHHHHHCCCEEecCC
Confidence 334567889999998862 235678889999999999999653
No 111
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=31.36 E-value=88 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeeec
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQWK 177 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W~ 177 (263)
+|...+. .+..+..|+|+.| ..-+-.|+-.|++|+..|||.+ +++.+.|.
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l---------------------~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~ 73 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPF---------------------DMALPSFMKHIHFLEDSGWIRTHKQGRVRTCA 73 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTC---------------------CSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHh---------------------CcCHHHHHHHHHHHHHCCCeEEEecCCEEEEE
Confidence 4556665 5777888877664 1335678889999999999987 44444443
No 112
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=31.10 E-value=1.6e+02 Score=21.76 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=42.8
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
-||-.--..|...+...+.+|.+|+|+.|- .-+-.|+-+++-|+.-|+|++.
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSASDCSVQKISDILG---------------------LDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp GTCCHHHHHHHHHHHHSSSBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHcCCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEee
Confidence 477777778889999999999999999862 2246788999999999999984
No 113
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=30.79 E-value=60 Score=24.47 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccC
Q 024762 104 SMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (263)
Q Consensus 104 S~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~K 171 (263)
=..++..+...+..|..|+|+.|- .-+--|..+++.|+.-|+|.+..
T Consensus 10 L~~i~~l~~~~~~~~~~ela~~l~---------------------vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 10 IEQIYMLIEEKGYARVSDIAEALA---------------------VHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHhhcCCCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHCCCEEEee
Confidence 344566677788899999999862 23567888999999999999954
No 114
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.67 E-value=1.4e+02 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNE 226 (263)
Q Consensus 186 ~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk 226 (263)
-++.|..|...|.++++.|...+..|..|..++++-+.+|+
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45666666666666666666666666666666655555444
No 115
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.20 E-value=1.3e+02 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024762 205 TAYLQELEDQFVGLQNLIQR 224 (263)
Q Consensus 205 k~~LqEL~~Q~~alknLI~R 224 (263)
...|++|..+...+-.+|+|
T Consensus 61 n~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 61 NKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 116
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=29.83 E-value=26 Score=29.17 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHHHHh---cCCCcHHHHHHHH
Q 024762 98 RGLRQFSMKVCEKVES---KGRTTYNEVADEL 126 (263)
Q Consensus 98 kGLR~fS~KVcekVk~---kg~TTYnEVAdeL 126 (263)
.|+-.|-.+|++.|.. -.++||.+||..+
T Consensus 67 ~g~t~fq~~V~~~l~~IP~G~~~tYg~iA~~~ 98 (156)
T 1wrj_A 67 KPFNEFRIRVFKEVMRIKWGEVRTYKQVADAV 98 (156)
T ss_dssp TTSCHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCceEcHHHHHHHh
Confidence 5667899999999988 4589999999885
No 117
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.51 E-value=1.6e+02 Score=22.10 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFV 216 (263)
Q Consensus 185 ~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~ 216 (263)
+.++.|+.|+..|+-.|++..-.|..+..++.
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766666666665444
No 118
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=29.29 E-value=1e+02 Score=22.87 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=37.6
Q ss_pred chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
||-.--..|...+...+. |.+|+|+.+- .-+-.|.-+++-|+.-|+|++
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~---------------------~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYF---------------------VTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEe
Confidence 555555667777777777 8888888762 234678889999999999998
No 119
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=28.47 E-value=80 Score=23.70 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+..|..|+|+.|- .-+--|+-+++-|+.-|+|++.
T Consensus 43 ~~l~~~~~~iL~~l~~~~~~t~~ela~~l~---------------------~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 43 LDLTYPQYLVMLVLWETDERSVSEIGERLY---------------------LDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp TTCCHHHHHHHHHHHHSCSEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhC---------------------CCcccHHHHHHHHHHCCCEeec
Confidence 466655666777888888899999988762 2256788899999999999983
No 120
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=27.27 E-value=1.4e+02 Score=22.08 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=39.3
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|-+|+|+.|- .-+-.|.-+++-|+.-|+|++.
T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~eLa~~l~---------------------~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVF---------------------LDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCcCHHHHHHHHC---------------------CChhhHHHHHHHHHHCCCeEec
Confidence 355555566777777778888888888762 2356788899999999999983
No 121
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=27.22 E-value=2.8e+02 Score=23.27 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc-CCeee
Q 024762 105 MKVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD-KKEIQ 175 (263)
Q Consensus 105 ~KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~-Kk~I~ 175 (263)
..|.+.+.+.+ ..|..|+|+.+= .-|--||-+|+.|+..|+|+++ .+.|.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~g---------------------l~~stv~r~l~~L~~~G~v~~~~~~~Y~ 62 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFN---------------------MSVSNAYKYMVVLEEKGFVLRKKDKRYV 62 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTT---------------------CCHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCcEEECCCCcEE
Confidence 45667776655 689999998851 3467899999999999999996 44443
No 122
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.01 E-value=1.3e+02 Score=28.12 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVG 217 (263)
Q Consensus 185 ~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~a 217 (263)
.+++.|+++...+++.|++.++.+++|..+...
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666665443
No 123
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=26.84 E-value=1.6e+02 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 188 EELKAERLGLRNRIEKKTAYLQELEDQFV 216 (263)
Q Consensus 188 ~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~ 216 (263)
++|-+.+.+++..|..|..++.||+.=..
T Consensus 17 eELi~l~lk~~~~l~~k~~~v~eLEdYID 45 (75)
T 3tso_C 17 EEVLQELVKHKELLRRKDTHIRELEDYID 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677777777777775333
No 124
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=26.37 E-value=77 Score=24.90 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|...+. .+.++++|+|+.| . .-+.-|...|+.|+..|||++
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~l--g-------------------is~~tls~~L~~Le~~GlI~r 69 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSL--G-------------------LAKNILAARLRNLVEHGVMVA 69 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHH--C-------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHh--C-------------------CCHHHHHHHHHHHHHCCCEEE
Confidence 34444454 6889999999886 1 234678899999999999999
No 125
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=25.70 E-value=56 Score=27.88 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCCeee
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk~I~ 175 (263)
.|.+.+.. +..|+.|+|+.+= .-.++++.+|.+|.++|+++++...|.
T Consensus 30 ~i~~~l~~-~~~t~~ela~~~~---------------------~~~~~l~r~L~~L~~~g~l~~~~~~y~ 77 (335)
T 2r3s_A 30 NVFTAISQ-GIESSQSLAQKCQ---------------------TSERGMRMLCDYLVIIGFMTKQAEGYR 77 (335)
T ss_dssp THHHHHTT-SEECHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ChHHHHhc-CCCCHHHHHHHhC---------------------CCchHHHHHHHHHHhcCCeEecCCEEe
Confidence 35667754 7899999888751 115889999999999999998655554
No 126
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.12 E-value=1.1e+02 Score=23.37 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc--cCCeeee
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK--DKKEIQW 176 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K--~Kk~I~W 176 (263)
+|...+. .+..+..|+|+.|= .-+-.|+-.|+.|+..|+|.+ +++.+.|
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lg---------------------is~stvs~~L~~Le~~Glv~~~~~gr~~~y 100 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIG---------------------VSESAVSHQLRSLRNLRLVSYRKQGRHVYY 100 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 4555554 46788888888861 234678999999999999987 4444444
No 127
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=24.80 E-value=79 Score=27.98 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCCeee
Q 024762 107 VCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQ 175 (263)
Q Consensus 107 VcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk~I~ 175 (263)
|.+.+.. .+..|+.|+|..+= .-.+.++.+|.+|.++|+++++...|.
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g---------------------~~~~~l~rlLr~l~~~g~l~~~~~~y~ 88 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTG---------------------LTRYAAQVLLEASLTIGTILLEEDRYV 88 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHhC---------------------cCHHHHHHHHHHHhhCCCeEecCCEEe
Confidence 6677766 57899999888751 113668899999999999998655443
No 128
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=24.75 E-value=1.5e+02 Score=22.56 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 102 QFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 102 ~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
++-..|+..+...+..+..++|+.|- .-+--|..+++.|+..|+|.+.
T Consensus 40 ~~~~~i~~~l~~~~~~~~~~la~~l~---------------------vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLG---------------------VSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhC---------------------cCHHHHHHHHHHHHHCCCEEEe
Confidence 34445555676778888888888762 2245577789999999999984
No 129
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=24.56 E-value=99 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhh-hhhHHHHhhhcccccc
Q 024762 106 KVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR-VYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRR-VYDalNVL~ai~lI~K 169 (263)
.|...+...+ ..|.+|+|+.|- .-+-- |+.+++-|+..|+|.+
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~---------------------is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASG---------------------VSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHC---------------------CCHHHHHTTHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHC---------------------CCchHHHHHHHHHHHHCCCeec
Confidence 4556677777 899999999872 23567 8899999999999985
No 130
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.19 E-value=1.7e+02 Score=19.92 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 184 LNDIEELKAERLGLRNRIEKKTAYLQELED 213 (263)
Q Consensus 184 ~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~ 213 (263)
.+.++.+-.|..+-+++|...+..|.+|..
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777766777666666666653
No 131
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.97 E-value=71 Score=24.81 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCCe
Q 024762 100 LRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKE 173 (263)
Q Consensus 100 LR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk~ 173 (263)
+-..-.+|.+.+++.+..|..|+|+.+ + -..-+-.|-.-|.+|+..|||++.+..
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l-------~------------~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRD-------E------------IRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTST-------T------------CCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHH-------h------------cCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 444567899999999999999999864 0 001223444557899999999985433
No 132
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.94 E-value=2.3e+02 Score=21.58 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNE 226 (263)
Q Consensus 186 ~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk 226 (263)
.+...+.++......++.++..|.+-......|..|.+|-.
T Consensus 82 ~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~ 122 (150)
T 3ajw_A 82 AIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQT 122 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667778888888888888888888877554
No 133
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.92 E-value=2.1e+02 Score=20.86 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=31.4
Q ss_pred chhhhhhHHHHhhhcccccccCCeeeeccCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 150 IRRRVYDALNVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQ 219 (263)
Q Consensus 150 iKRRVYDalNVL~ai~lI~K~Kk~I~W~G~~---~~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alk 219 (263)
..+..-+++.=|+ .+.-+-+-++-.|-- .....-...|+.....+..+|+...+.+..+..+...++
T Consensus 30 ~~~e~~~~~~EL~---~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 30 QINETQKALEELS---RAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHH---HSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444 444454555555521 111223344555555555555555555555555544444
No 134
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.81 E-value=2.4e+02 Score=21.39 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=41.4
Q ss_pred chhhHHHHHHHHHHh-cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 99 GLRQFSMKVCEKVES-KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 99 GLR~fS~KVcekVk~-kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
||-.--..|...+-. .+..|-.|||+.|-.+ ...-+--||-+|+-|+.-|+|.+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~-----------------~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSAR-----------------RDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTT-----------------CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcc-----------------CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 455555678888887 5889999999987421 002256899999999999999993
No 135
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.37 E-value=2.2e+02 Score=20.74 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=39.7
Q ss_pred cchhhHHHHHHHHHHhcC--CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 98 RGLRQFSMKVCEKVESKG--RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg--~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.||-.--..|...+...+ .+|..|+|+.+- .-+-.|+-+++-|+.-|+|++
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~---------------------~~~~tvs~~l~~Le~~Gli~r 79 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQ---------------------RTGPTVSNLLRNLERKKLIYR 79 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhC---------------------CCcccHHHHHHHHHHCCCEee
Confidence 456666667777777775 888888888862 235678899999999999998
No 136
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.34 E-value=1e+02 Score=22.37 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQ 214 (263)
Q Consensus 185 ~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q 214 (263)
.-+..|+.+...+..++++.+.....|..+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555555554444444444443
No 137
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.19 E-value=2.5e+02 Score=21.40 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHhcCCCC----CCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeee
Q 024762 118 TYNEVADELVAEFADPSN----SLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (263)
Q Consensus 118 TYnEVAdeLV~e~~~~~~----~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~ 175 (263)
-|..|++.|...+....- .+.+..+-+.....-|--|-.|+..|++-|+|+. .++...
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEE
Confidence 477788877776543221 1111112344555678889999999999999998 444433
No 138
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=23.17 E-value=47 Score=28.18 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.2
Q ss_pred cchhhHHHHHHHHHH-h---cCCCcHHHHHHHH
Q 024762 98 RGLRQFSMKVCEKVE-S---KGRTTYNEVADEL 126 (263)
Q Consensus 98 kGLR~fS~KVcekVk-~---kg~TTYnEVAdeL 126 (263)
.|+-.|-.+|++.|. . -.++||.+||..+
T Consensus 87 ~g~t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~ 119 (174)
T 1mgt_A 87 EGVTPFEKKVYEWLTKNVKRGSVITYGDLAKAL 119 (174)
T ss_dssp TTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHT
T ss_pred cCCChHHHHHHHHHHccCCCCceEeHHHHHHHh
Confidence 466789999999998 5 5689999999885
No 139
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=23.14 E-value=1.1e+02 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccC
Q 024762 105 MKVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171 (263)
Q Consensus 105 ~KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~K 171 (263)
..|.+.+.+.+ ..|..|+|+.+= .-|--||-+|+.|+..|+|+++.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~g---------------------l~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVG---------------------LPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTT---------------------SCHHHHHHHHHHHHTTTSEEECG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEeC
Confidence 45666676654 689999998851 33678999999999999999954
No 140
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.87 E-value=2.5e+02 Score=21.29 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHhcCCC----CCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeee
Q 024762 116 RTTYNEVADELVAEFADPS----NSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (263)
Q Consensus 116 ~TTYnEVAdeLV~e~~~~~----~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~ 175 (263)
..-|..|++.|...+.... ..+.+..+-+.....-|--|-.|+..|+.-|+|++ .++...
T Consensus 12 ~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp SCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 4456677777766654321 11111122333344667889999999999999998 555444
No 141
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=22.70 E-value=2.4e+02 Score=20.92 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+... +.+|-.|+|+.+- .-+-.|..+++-|+.-|+|++.
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~---------------------~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFG---------------------RRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC---------------------------CHHHHHHHHHHTTSBCCC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHC---------------------CChhHHHHHHHHHHHCCCEEee
Confidence 35555555666667666 7788888887753 2234578899999999999984
No 142
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=22.15 E-value=53 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 105 MKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 105 ~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
..|...+. .|..+|+|+++.|- ..-.+-+...|..|+.-|||+|
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~--------------------gIs~~~Ls~~L~~Le~~GLV~R 72 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICP--------------------SITQRMLTLQLRELEADGIVHR 72 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCT--------------------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh-cCCcCHHHHHHHhc--------------------ccCHHHHHHHHHHHHHCCCEEE
Confidence 33444444 78899999888751 1234678889999999999998
No 143
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.84 E-value=1.4e+02 Score=19.33 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 024762 208 LQELEDQFVGLQNLIQRNERL 228 (263)
Q Consensus 208 LqEL~~Q~~alknLI~RNk~~ 228 (263)
..||......+.+-|.|++.+
T Consensus 9 VEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 445555556666777777655
No 144
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.82 E-value=1.3e+02 Score=23.34 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024762 185 NDIEELKAERLGLRNRIEKKTAYLQELED-QFVGLQNLIQ 223 (263)
Q Consensus 185 ~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~-Q~~alknLI~ 223 (263)
..+..|++|+..|.+ +++.|.+++. -...|+++.+
T Consensus 6 ~~~~~Lk~El~~L~~----~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQE----SEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 345667766655432 2444444443 2225556654
No 145
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.73 E-value=2.5e+02 Score=20.83 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHHHhcC-CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 99 GLRQFSMKVCEKVESKG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 99 GLR~fS~KVcekVk~kg-~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
||-.--..|...+...+ ..|..|+|+.+- .-+-.|.-+++-|+.-|+|++
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~---------------------i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMG---------------------LDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHT---------------------CCHHHHHHHHHHHHTTTSEEC
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHC---------------------CCHhHHHHHHHHHHHCCCEEe
Confidence 44444445555554433 457777777652 335678889999999999998
No 146
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.37 E-value=1.9e+02 Score=26.77 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=5.5
Q ss_pred ceEEeEeee
Q 024762 252 QLFSCIMAS 260 (263)
Q Consensus 252 tvI~C~iss 260 (263)
-.+-|.|..
T Consensus 101 f~V~CDm~t 109 (323)
T 1lwu_C 101 FLVFCEIEN 109 (323)
T ss_dssp EEEEEEECS
T ss_pred EEEEEeccc
Confidence 356687753
No 147
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.34 E-value=2.5e+02 Score=20.74 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred hhhhhhHHHHhhhcccccccCCeeeeccCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 151 RRRVYDALNVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQ 219 (263)
Q Consensus 151 KRRVYDalNVL~ai~lI~K~Kk~I~W~G~~---~~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alk 219 (263)
++..-+++ ..+..+.-+.+-++-.|-- .....-...|+.....+...|+...+.+..+..+...++
T Consensus 36 ~~e~~~~~---~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 36 LTEAKKAL---DEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHH---HHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 4444444555555555521 111223444555555555555555555555555554444
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.26 E-value=81 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhh
Q 024762 114 KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMA 163 (263)
Q Consensus 114 kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~a 163 (263)
-...||.|||+.|= ....++|+|++-|+.-|..
T Consensus 51 ~~g~s~~eIA~~lg-----------------is~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 51 YRGWSTAQIATDLG-----------------IAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCCCHHHHHHHHT-----------------SCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHC-----------------cCHHHHHHHHHHHHHHHHH
Confidence 45679999999972 1356899999999888764
No 149
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=21.03 E-value=47 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.430 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHh---cCCCcHHHHHHHH
Q 024762 101 RQFSMKVCEKVES---KGRTTYNEVADEL 126 (263)
Q Consensus 101 R~fS~KVcekVk~---kg~TTYnEVAdeL 126 (263)
-.|-.+|++.|.. -.++||.|||..|
T Consensus 95 t~Fq~~V~~~l~~IP~G~~~tYg~iA~~~ 123 (180)
T 1sfe_A 95 TAFQQQVWQALRTIPCGETVSYQQLANAI 123 (180)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred ChHHHHHHHHHhcCCCCCeEeHHHHHHHh
Confidence 4799999999988 4589999999885
No 150
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.84 E-value=82 Score=27.87 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 024762 187 IEELKAERLGLRNRIEKK---TAYLQELEDQFVGLQNLIQ 223 (263)
Q Consensus 187 ~~~Lk~E~~~l~erI~~K---k~~LqEL~~Q~~alknLI~ 223 (263)
-+.|.+++..+++.|... ...|++|..+...|-++|+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443322 3334444445445555554
No 151
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.78 E-value=2.6e+02 Score=22.79 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 187 IEELKAERLGLRNRIEKKTAYLQELE 212 (263)
Q Consensus 187 ~~~Lk~E~~~l~erI~~Kk~~LqEL~ 212 (263)
+++|+.|+..|.+.|++..+.+..|.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 152
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.75 E-value=1.5e+02 Score=23.01 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHhcCCCCCCC----CCCccccccccchhhhhhHHHHhhhcccccc-cCCeee
Q 024762 117 TTYNEVADELVAEFADPSNSLA----TPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (263)
Q Consensus 117 TTYnEVAdeLV~e~~~~~~~~~----~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~ 175 (263)
+.|..|++.|...+....-..+ +..+-+.....-|--|-.|++.|++.|+|+. .++.+.
T Consensus 4 ~~~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~ 67 (129)
T 2ek5_A 4 PLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMF 67 (129)
T ss_dssp CHHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEE
Confidence 4577788877776654221111 1112333445667889999999999999998 454444
No 153
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.75 E-value=1.1e+02 Score=22.39 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHhc------CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762 106 KVCEKVESK------GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169 (263)
Q Consensus 106 KVcekVk~k------g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K 169 (263)
.|++.|++. +..|..|||+.|= + -.--|..-|+.|+.-|+|.+
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lg---------v------------S~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAG---------L------------SIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHT---------C------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHC---------C------------CHHHHHHHHHHHHHCCcEEe
Confidence 355555555 8889999999872 0 01336667999999999998
No 154
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=20.71 E-value=1.2e+02 Score=25.97 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeee
Q 024762 106 KVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (263)
Q Consensus 106 KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~ 175 (263)
.|.+.+. .+..|+.|+|..+= .-.+.++-+|.+|.++||+.+ .+..+.
T Consensus 29 glf~~l~-~g~~t~~elA~~~~---------------------~~~~~l~rlLr~l~~~gl~~~~~~~~y~ 77 (332)
T 3i53_A 29 RVADHIA-AGHRTAAEIASAAG---------------------AHADSLDRLLRHLVAVGLFTRDGQGVYG 77 (332)
T ss_dssp THHHHHH-TTCCBHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEECTTSBEE
T ss_pred ChHHHHh-cCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHhCCcEEecCCCeEE
Confidence 3677775 47899999998851 113578899999999999999 455555
No 155
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.49 E-value=59 Score=21.35 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=25.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhh
Q 024762 114 KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMA 163 (263)
Q Consensus 114 kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~a 163 (263)
....||.|||+.|- ....+++++++.++.-|..
T Consensus 29 ~~g~s~~eIA~~lg-----------------is~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 29 LLGLSYADAAAVCG-----------------CPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSCCCHHHHHHHHT-----------------SCHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHC-----------------cCHHHHHHHHHHHHHHHHH
Confidence 34589999999972 1356889999999887764
No 156
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=20.44 E-value=1.3e+02 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeee
Q 024762 107 VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQ 175 (263)
Q Consensus 107 VcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~ 175 (263)
|.+.+. .+..|+.|+|+.+= .-.++++.+|.+|.++||+++ ....|.
T Consensus 33 i~~~l~-~~~~t~~ela~~~~---------------------~~~~~l~r~Lr~L~~~g~l~~~~~~~y~ 80 (334)
T 2ip2_A 33 LADLIE-SGIDSDETLAAAVG---------------------SDAERIHRLMRLLVAFEIFQGDTRDGYA 80 (334)
T ss_dssp HHHHHH-TTCCSHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred cHHHHh-CCCCCHHHHHHHhC---------------------cCHHHHHHHHHHHHhCCceEecCCCeEe
Confidence 566664 47899999988751 112789999999999999998 445554
No 157
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.44 E-value=1.3e+02 Score=23.91 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC--CCcHHHHHHHH
Q 024762 105 MKVCEKVESKG--RTTYNEVADEL 126 (263)
Q Consensus 105 ~KVcekVk~kg--~TTYnEVAdeL 126 (263)
+-||+..++-. ..+-.|||+.+
T Consensus 3 ~~~~~~~k~M~~~~~~I~evA~~~ 26 (148)
T 3gpv_A 3 LALYLGNKRMNDMYYTIGQVAKMQ 26 (148)
T ss_dssp ------------CCBCHHHHHHHT
T ss_pred CcccCCCCccccCceeHHHHHHHH
Confidence 33444443332 45566666654
No 158
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.40 E-value=2.3e+02 Score=25.05 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024762 193 ERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLY 229 (263)
Q Consensus 193 E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~ 229 (263)
|-.+|.++|+.+++.+..|...-.-+++|++.=+.+.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777778877766653
No 159
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=20.25 E-value=62 Score=24.02 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=39.7
Q ss_pred cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762 98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170 (263)
Q Consensus 98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~ 170 (263)
.||-.--..|...+...+.+|..|+|+.+- .-+-.|+-+++-|+.-|+|++.
T Consensus 36 ~~l~~~~~~iL~~l~~~~~~~~~~la~~l~---------------------~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLY---------------------LDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTT---------------------CCHHHHHHHHHHHHHHTSEECC
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHC---------------------CCcCcHHHHHHHHHHCCCEEec
Confidence 456555566777777778888888887641 2356789999999999999983
No 160
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.21 E-value=1.8e+02 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024762 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQN 220 (263)
Q Consensus 186 ~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alkn 220 (263)
+++.|++|+..+++++++.++.+.++......++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444443
Done!