Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>024764
MEEETIIISALSTLTPNKLKDLTHTILSLSDHWRRRLSAVISSPILFSLTLHHLHSLSLP
NKTLLIARHLLFSLQLLTQCFPRAPPPHSSTYQIKRRDHDAVLLLLLLCEVHQQDPEALS
AAPQAKWPAVLGKHFCESALSLSGIVGGAYEGAVLLPYVEMVTRCRRFVNAMGGGGVRGG
EKEGRDVAAAVAAVVRLPSVDGAGADQCCVICKEEMGGGRDVCSGSLLMMFLERSNGCGT
LSLKRAAAAVLMENDNNAIIACD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024764
        (263 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2151241 - symbol:SGR9 "SHOOT GRAVITROPISM 9" s...   318  1.5e-28   1


>TAIR|locus:2151241 [details] [associations]
            symbol:SGR9 "SHOOT GRAVITROPISM 9" species:3702
            "Arabidopsis thaliana" [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] [GO:0004842 "ubiquitin-protein ligase activity"
            evidence=IDA] [GO:0009501 "amyloplast" evidence=IDA] [GO:0009630
            "gravitropism" evidence=IMP] InterPro:IPR001841 Pfam:PF13639
            PROSITE:PS50089 SMART:SM00184 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0009630
            Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 HSSP:P38398
            GO:GO:0009501 EMBL:BT005552 EMBL:AK118262 IPI:IPI00519960
            RefSeq:NP_195895.2 UniGene:At.33371 ProteinModelPortal:Q8GXF8
            SMR:Q8GXF8 EnsemblPlants:AT5G02750.1 GeneID:831806
            KEGG:ath:AT5G02750 TAIR:At5g02750 eggNOG:NOG310232
            HOGENOM:HOG000084017 InParanoid:Q8GXF8 OMA:LARRNTC PhylomeDB:Q8GXF8
            ProtClustDB:CLSN2690743 Genevestigator:Q8GXF8 Uniprot:Q8GXF8
        Length = 283

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 89/236 (37%), Positives = 115/236 (48%)

Query:     1 MEEE--TIIISALSTLTPNKLKDLTHTILSLSDHWRRRLSAVISSPIXXXXXXXXXXXXX 58
             ME+E  TII+++LS L+P+ L +LTH+ILS+S H RRRL AV+SSP              
Sbjct:     1 MEDENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLS 60

Query:    59 XPNKTLLIARHLLFSLQLLTQCFPRAPPPHSSTYQI--KRRDHDAVXXXXXXCEVHQQDP 116
              P+KT LIA HLL  L  L     R    H S+Y +  K RD DAV      CE HQ  P
Sbjct:    61 LPDKTHLIANHLLSLLHPLL--IHRK---HHSSYAVTMKLRDLDAVVLLLFLCETHQLHP 115

Query:   117 EALSAAPQAKWPAVLGKHFCESALSL-SGIVGGAYEGAVLLPYVEMVTRCRRFVNAMXXX 175
             + L A+    W  +LG  +  + LS  SG+     +  +L+PY+E + RC+RFV+ M   
Sbjct:   116 DVLEASAD-NWREILGNTYSNNMLSNNSGL--WTCDAGILMPYIETLVRCKRFVDIMGGY 172

Query:   176 XXXXXXXXXXD----XXXXXXXXXRLPSVDGAGADQC----CVICKEEMGGGRDVC 223
                                     R   V    A       CVICKEEM  GRDVC
Sbjct:   173 NHLRRRDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVC 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       221   0.00095  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  181 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.05u 0.14s 17.19t   Elapsed:  00:00:01
  Total cpu time:  17.05u 0.14s 17.19t   Elapsed:  00:00:01
  Start:  Fri May 10 23:46:01 2013   End:  Fri May 10 23:46:02 2013

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