BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024764
         (263 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P77265|MDLA_ECOLI Multidrug resistance-like ATP-binding protein MdlA OS=Escherichia
           coli (strain K12) GN=mdlA PE=3 SV=1
          Length = 590

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 18  KLKDLTHTILSLSDHWRRRLSAVISSPILFSLTLHHLHSLSLPNKT 63
           +  D+  T L L D WR RL+ V  +P LFS T+ +  +L  PN T
Sbjct: 394 RFHDIPLTKLQL-DSWRSRLAVVSQTPFLFSDTVANNIALGCPNAT 438


>sp|A0LSL4|ATPA_ACIC1 ATP synthase subunit alpha OS=Acidothermus cellulolyticus (strain
           ATCC 43068 / 11B) GN=atpA PE=3 SV=1
          Length = 554

 Score = 31.6 bits (70), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 149 AYEGAVLLPYVEMVTRCRRFVNAMGGGGVRG---GEKEGRDVAAAV 191
           AY G V   +  ++ RC +  +AMGGG + G    E +G DV+A +
Sbjct: 297 AYPGDVFYLHSRLLERCAKLSDAMGGGSLTGLPIIETKGNDVSAYI 342


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,991,608
Number of Sequences: 539616
Number of extensions: 4037596
Number of successful extensions: 9069
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9068
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)