Query 024764
Match_columns 263
No_of_seqs 146 out of 486
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.3 2.3E-12 7.7E-17 96.9 5.1 63 185-247 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.1 1.6E-11 5.5E-16 88.3 -0.1 57 192-248 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 98.8 1.8E-09 6.1E-14 72.8 3.6 43 204-246 3-54 (55)
4 2ect_A Ring finger protein 126 98.7 4.9E-09 1.7E-13 75.4 3.5 50 204-253 13-70 (78)
5 2ecl_A Ring-box protein 2; RNF 98.7 9E-09 3.1E-13 76.0 3.3 45 204-248 13-77 (81)
6 2kiz_A E3 ubiquitin-protein li 98.7 9.5E-09 3.2E-13 72.3 3.1 46 204-249 12-65 (69)
7 2ep4_A Ring finger protein 24; 98.7 1E-08 3.5E-13 73.0 3.2 47 204-250 13-67 (74)
8 3dpl_R Ring-box protein 1; ubi 98.6 1.4E-08 4.6E-13 80.1 3.4 59 188-246 8-100 (106)
9 2ecm_A Ring finger and CHY zin 98.6 2E-08 7E-13 67.4 3.3 43 205-247 4-55 (55)
10 1v87_A Deltex protein 2; ring- 98.6 2.8E-08 9.6E-13 76.0 3.5 58 190-247 9-94 (114)
11 4a0k_B E3 ubiquitin-protein li 98.6 1.9E-09 6.6E-14 86.9 -3.4 42 205-246 47-111 (117)
12 2d8s_A Cellular modulator of i 98.5 5.6E-08 1.9E-12 73.1 3.1 47 204-250 13-73 (80)
13 2xeu_A Ring finger protein 4; 98.4 4.3E-08 1.5E-12 67.1 1.3 46 204-249 1-58 (64)
14 3ng2_A RNF4, snurf, ring finge 98.4 6.3E-08 2.2E-12 67.8 1.9 45 205-249 9-65 (71)
15 2ecn_A Ring finger protein 141 98.4 2.9E-08 9.9E-13 70.0 -0.1 52 204-255 13-68 (70)
16 1chc_A Equine herpes virus-1 r 98.4 1.2E-07 4.1E-12 66.3 2.9 47 204-250 3-55 (68)
17 2ct0_A Non-SMC element 1 homol 98.3 2.5E-07 8.4E-12 69.5 3.3 50 203-252 12-69 (74)
18 2ea6_A Ring finger protein 4; 98.3 2E-07 7E-12 64.5 2.5 44 204-247 13-68 (69)
19 2djb_A Polycomb group ring fin 98.2 5.8E-07 2E-11 64.0 3.1 49 205-253 14-68 (72)
20 4ap4_A E3 ubiquitin ligase RNF 98.2 3.3E-07 1.1E-11 70.1 0.9 49 202-250 68-128 (133)
21 2d8t_A Dactylidin, ring finger 98.1 7.6E-07 2.6E-11 63.2 2.1 46 205-250 14-64 (71)
22 2ct2_A Tripartite motif protei 98.1 1.1E-06 3.7E-11 63.6 2.9 47 204-250 13-71 (88)
23 4ap4_A E3 ubiquitin ligase RNF 98.1 7.7E-07 2.6E-11 68.1 1.6 47 204-250 5-63 (133)
24 2yur_A Retinoblastoma-binding 98.0 2.3E-06 8E-11 61.5 3.2 53 205-257 14-74 (74)
25 4ayc_A E3 ubiquitin-protein li 97.9 4E-06 1.4E-10 66.9 1.8 44 206-249 53-101 (138)
26 2y43_A E3 ubiquitin-protein li 97.8 6.1E-06 2.1E-10 61.8 2.5 45 205-249 21-71 (99)
27 2ecy_A TNF receptor-associated 97.8 1.1E-05 3.8E-10 56.3 3.6 45 205-249 14-64 (66)
28 2egp_A Tripartite motif-contai 97.8 1.2E-05 4E-10 57.2 3.8 46 205-251 11-69 (79)
29 2ecw_A Tripartite motif-contai 97.8 9.2E-06 3.1E-10 57.9 3.0 47 205-251 18-75 (85)
30 2ysl_A Tripartite motif-contai 97.8 1.3E-05 4.3E-10 56.4 2.9 46 204-249 18-71 (73)
31 2ecv_A Tripartite motif-contai 97.8 2E-05 7E-10 56.1 4.0 47 205-251 18-75 (85)
32 2csy_A Zinc finger protein 183 97.7 1.6E-05 5.6E-10 57.5 2.5 42 205-246 14-60 (81)
33 3lrq_A E3 ubiquitin-protein li 97.7 1.4E-05 4.8E-10 60.7 2.1 46 205-250 21-73 (100)
34 1t1h_A Gspef-atpub14, armadill 97.7 1.7E-05 6E-10 56.6 2.4 44 205-249 7-57 (78)
35 2ckl_A Polycomb group ring fin 97.7 1.4E-05 4.8E-10 60.9 1.9 46 205-250 14-65 (108)
36 2ckl_B Ubiquitin ligase protei 97.5 3.4E-05 1.2E-09 62.8 2.0 44 206-249 54-104 (165)
37 1jm7_A BRCA1, breast cancer ty 97.5 5.6E-05 1.9E-09 57.0 3.0 45 206-250 21-73 (112)
38 1g25_A CDK-activating kinase a 97.5 5E-05 1.7E-09 52.8 2.3 44 205-249 2-57 (65)
39 2vje_A E3 ubiquitin-protein li 97.4 3.9E-05 1.3E-09 54.4 1.5 42 205-247 7-57 (64)
40 1e4u_A Transcriptional repress 97.3 0.00019 6.6E-09 53.3 3.8 51 204-255 9-70 (78)
41 3hct_A TNF receptor-associated 97.3 8.1E-05 2.8E-09 57.7 1.6 44 205-249 17-67 (118)
42 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00018 6E-09 51.3 2.6 42 205-247 5-59 (60)
43 3ztg_A E3 ubiquitin-protein li 97.2 0.00015 5.1E-09 53.2 2.3 44 205-248 12-63 (92)
44 3fl2_A E3 ubiquitin-protein li 97.2 0.00015 5E-09 56.5 2.1 42 206-247 52-99 (124)
45 1rmd_A RAG1; V(D)J recombinati 97.1 0.00017 5.7E-09 55.4 2.4 44 206-250 23-73 (116)
46 1z6u_A NP95-like ring finger p 97.1 0.00015 5.3E-09 59.3 2.1 43 206-249 78-127 (150)
47 2kr4_A Ubiquitin conjugation f 97.1 0.00022 7.7E-09 53.1 2.6 44 205-249 13-62 (85)
48 1jm7_B BARD1, BRCA1-associated 97.1 0.00039 1.3E-08 53.8 4.0 56 186-249 8-69 (117)
49 1wgm_A Ubiquitin conjugation f 97.0 0.00028 9.7E-09 54.2 2.8 45 205-249 21-71 (98)
50 3k1l_B Fancl; UBC, ring, RWD, 97.0 0.00014 4.9E-09 69.2 1.2 46 205-250 307-376 (381)
51 3l11_A E3 ubiquitin-protein li 97.0 0.00015 5.1E-09 55.6 1.1 43 205-247 14-62 (115)
52 2ecj_A Tripartite motif-contai 97.0 0.00047 1.6E-08 46.1 3.2 37 205-241 14-58 (58)
53 2y1n_A E3 ubiquitin-protein li 97.0 0.00021 7E-09 68.0 2.0 46 206-251 332-383 (389)
54 2kre_A Ubiquitin conjugation f 96.9 0.00036 1.2E-08 53.8 2.3 44 205-249 28-77 (100)
55 2ysj_A Tripartite motif-contai 96.9 0.00057 2E-08 46.9 3.0 38 204-241 18-63 (63)
56 2bay_A PRE-mRNA splicing facto 96.9 0.00028 9.5E-09 50.3 1.4 43 206-250 3-53 (61)
57 2vje_B MDM4 protein; proto-onc 96.7 0.0005 1.7E-08 48.5 1.5 42 205-247 6-56 (63)
58 1bor_A Transcription factor PM 96.5 0.0024 8.3E-08 43.7 3.7 41 205-249 5-51 (56)
59 2c2l_A CHIP, carboxy terminus 96.4 0.0015 5.3E-08 55.3 2.9 44 205-249 207-257 (281)
60 3hcs_A TNF receptor-associated 96.3 0.0012 4.1E-08 53.7 1.6 44 205-249 17-67 (170)
61 3knv_A TNF receptor-associated 96.3 0.00052 1.8E-08 55.7 -0.7 43 204-247 29-78 (141)
62 2yu4_A E3 SUMO-protein ligase 95.7 0.003 1E-07 47.5 1.4 44 205-249 6-65 (94)
63 4ic3_A E3 ubiquitin-protein li 95.4 0.0045 1.5E-07 44.5 1.3 41 205-249 23-69 (74)
64 2ecg_A Baculoviral IAP repeat- 95.4 0.012 4E-07 42.2 3.5 44 206-250 25-71 (75)
65 2f42_A STIP1 homology and U-bo 95.4 0.0071 2.4E-07 51.8 2.6 44 205-249 105-155 (179)
66 2ea5_A Cell growth regulator w 94.4 0.028 9.5E-07 40.3 3.2 49 204-253 13-64 (68)
67 3nw0_A Non-structural maintena 93.7 0.036 1.2E-06 48.9 3.1 48 203-250 177-232 (238)
68 1wim_A KIAA0161 protein; ring 92.4 0.036 1.2E-06 41.0 0.9 43 205-248 4-67 (94)
69 3htk_C E3 SUMO-protein ligase 91.9 0.042 1.5E-06 50.2 1.0 43 206-249 181-234 (267)
70 3t6p_A Baculoviral IAP repeat- 91.7 0.058 2E-06 50.0 1.7 40 205-248 294-339 (345)
71 2yho_A E3 ubiquitin-protein li 90.6 0.063 2.2E-06 39.3 0.7 42 206-252 18-66 (79)
72 2jvx_A NF-kappa-B essential mo 48.1 4.4 0.00015 25.4 0.3 17 235-251 3-19 (28)
73 3vk6_A E3 ubiquitin-protein li 47.6 6 0.00021 31.5 1.1 51 208-262 3-61 (101)
74 2ko5_A Ring finger protein Z; 41.1 10 0.00034 30.3 1.4 46 206-253 28-79 (99)
75 3mjh_B Early endosome antigen 35.3 10 0.00034 24.7 0.5 15 237-251 7-21 (34)
76 4g2e_A Peroxiredoxin; redox pr 25.6 19 0.00066 27.8 0.7 20 235-254 40-59 (157)
77 3vhs_A ATPase wrnip1; zinc fin 24.7 17 0.00058 22.9 0.2 14 236-249 7-20 (29)
78 2ctd_A Zinc finger protein 512 21.6 18 0.0006 26.3 -0.2 46 205-252 33-79 (96)
79 2cu8_A Cysteine-rich protein 2 20.2 79 0.0027 21.7 2.9 52 204-259 7-58 (76)
80 1weo_A Cellulose synthase, cat 20.1 1.2E+02 0.004 23.9 4.1 42 205-246 15-69 (93)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=96.94 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=53.8
Q ss_pred CCchhhHHHHHcCCceecCC------CCccCccccccccCCCccccc---c---c--chhhhhcCCCCCCCCCCCCC
Q 024764 185 RDVAAAVAAVVRLPSVDGAG------ADQCCVICKEEMGGGRDVCSG---S---L--LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 185 g~pPASkaaI~aLP~V~i~~------~~~eCaIClEEf~~Ge~v~~L---H---~--I~pWL~~~nTCPvCR~eLpt 247 (263)
+.++++++.|++||.+.+.. ++.+|+||+++|..|+.+..+ | . |.+||+.+++||+||.+++.
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 77889999999999998743 356799999999998866544 4 3 99999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-11 Score=88.32 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHHHcCCceecCC-----CCccCccccccccCCCccccc------cc--chhhhhcCCCCCCCCCCCCCc
Q 024764 192 AAVVRLPSVDGAG-----ADQCCVICKEEMGGGRDVCSG------SL--LMMFLERSNGCGTLSLKRAAA 248 (263)
Q Consensus 192 aaI~aLP~V~i~~-----~~~eCaIClEEf~~Ge~v~~L------H~--I~pWL~~~nTCPvCR~eLptd 248 (263)
+.|++||.+++.. ++.+|+||+++|..++.+..+ |. |.+||+.+++||+||.++...
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567889887742 467899999999988765444 44 999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.84 E-value=1.8e-09 Score=72.81 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.8
Q ss_pred CCCccCccccccccCCCcc-----ccc--cc--chhhhhcCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGRDV-----CSG--SL--LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v-----~~L--H~--I~pWL~~~nTCPvCR~eLp 246 (263)
+++.+|+||+++|..|+.+ |.+ |. |.+|++.+++||+||.+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999988754 443 44 9999999999999999875
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=4.9e-09 Score=75.37 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=40.6
Q ss_pred CCCccCccccccccCCCcc----ccc--cc--chhhhhcCCCCCCCCCCCCCchhhhh
Q 024764 204 GADQCCVICKEEMGGGRDV----CSG--SL--LMMFLERSNGCGTLSLKRAAAAVLME 253 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v----~~L--H~--I~pWL~~~nTCPvCR~eLptdD~~~E 253 (263)
.++.+|+||+++|..++.+ |.+ |. |.+|++.+++||+||.++...+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 3468899999999987765 444 33 99999999999999999988766543
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9e-09 Score=76.04 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=33.8
Q ss_pred CCCccCccccccccC-----------CCcc-----ccc--cc--chhhhhcCCCCCCCCCCCCCc
Q 024764 204 GADQCCVICKEEMGG-----------GRDV-----CSG--SL--LMMFLERSNGCGTLSLKRAAA 248 (263)
Q Consensus 204 ~~~~eCaIClEEf~~-----------Ge~v-----~~L--H~--I~pWL~~~nTCPvCR~eLptd 248 (263)
.++..|+||+++|.. ++.+ |.+ |. |.+||+.+++||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 346678888888854 3333 444 55 999999999999999998754
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=9.5e-09 Score=72.29 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=37.8
Q ss_pred CCCccCccccccccCCCccccc---c---c--chhhhhcCCCCCCCCCCCCCch
Q 024764 204 GADQCCVICKEEMGGGRDVCSG---S---L--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v~~L---H---~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
+.+.+|+||+++|..++.+..+ | . |.+|++.+++||+||.++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3467899999999887765444 4 3 9999999999999999987654
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=72.99 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCCccCccccccccCCCcc----ccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGGGRDV----CSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v----~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
..+.+|+||+++|..++.+ |.+ |. |.+|++.+++||+||.++...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3467899999999987765 443 44 99999999999999999876543
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.63 E-value=1.4e-08 Score=80.06 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=38.5
Q ss_pred hhhHHHHHcCCceec-----------CCCCccCccccccccCCCc-------------------cccc--cc--chhhhh
Q 024764 188 AAAVAAVVRLPSVDG-----------AGADQCCVICKEEMGGGRD-------------------VCSG--SL--LMMFLE 233 (263)
Q Consensus 188 PASkaaI~aLP~V~i-----------~~~~~eCaIClEEf~~Ge~-------------------v~~L--H~--I~pWL~ 233 (263)
|+.+......++++| ..++..|+||+++|..... .|.+ |. |.+||+
T Consensus 8 ~~~~~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 8 PSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp ---------CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred CcccccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence 344455667777765 2357789999999986522 2444 54 999999
Q ss_pred cCCCCCCCCCCCC
Q 024764 234 RSNGCGTLSLKRA 246 (263)
Q Consensus 234 ~~nTCPvCR~eLp 246 (263)
.+++||+||.+..
T Consensus 88 ~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 88 TRQVCPLDNREWE 100 (106)
T ss_dssp TCSBCSSSCSBCC
T ss_pred cCCcCcCCCCcce
Confidence 9999999999864
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.61 E-value=2e-08 Score=67.37 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCccCccccccccCCCc-c----ccc--cc--chhhhhcCCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGRD-V----CSG--SL--LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~-v----~~L--H~--I~pWL~~~nTCPvCR~eLpt 247 (263)
++.+|+||+++|..++. + |.+ |. |.+|++.+.+||+||.+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46789999999976543 3 333 33 99999999999999998863
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.57 E-value=2.8e-08 Score=76.04 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=39.6
Q ss_pred hHHHHHcCCceecCCCCccCccccccccCCC-------------------ccccc--cc--chhhh-----hcCCCCCCC
Q 024764 190 AVAAVVRLPSVDGAGADQCCVICKEEMGGGR-------------------DVCSG--SL--LMMFL-----ERSNGCGTL 241 (263)
Q Consensus 190 SkaaI~aLP~V~i~~~~~eCaIClEEf~~Ge-------------------~v~~L--H~--I~pWL-----~~~nTCPvC 241 (263)
..+.|.....+.-...+.+|+||+++|..+. ..|.+ |. |.+|| +.+.+||+|
T Consensus 9 p~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~C 88 (114)
T 1v87_A 9 PEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88 (114)
T ss_dssp HHHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTT
T ss_pred hHHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCC
Confidence 3455555433322334678999999997653 12554 54 99999 568899999
Q ss_pred CCCCCC
Q 024764 242 SLKRAA 247 (263)
Q Consensus 242 R~eLpt 247 (263)
|..+..
T Consensus 89 R~~~~~ 94 (114)
T 1v87_A 89 KTIYGE 94 (114)
T ss_dssp CCBSSS
T ss_pred CCccCC
Confidence 998754
No 11
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.56 E-value=1.9e-09 Score=86.92 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=1.1
Q ss_pred CCccCccccccccCC-------------Cc------cccc--cc--chhhhhcCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGG-------------RD------VCSG--SL--LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 205 ~~~eCaIClEEf~~G-------------e~------v~~L--H~--I~pWL~~~nTCPvCR~eLp 246 (263)
.+..|+||+++|... ++ .|.+ |. |.+||+.+++||+||.+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 467899999999753 21 3554 55 9999999999999999853
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.6e-08 Score=73.09 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=37.3
Q ss_pred CCCccCccccccccCCCcc---cc-----c--cc--chhhhhcCC--CCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGGGRDV---CS-----G--SL--LMMFLERSN--GCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v---~~-----L--H~--I~pWL~~~n--TCPvCR~eLptdD~ 250 (263)
.++.+|.||+++|..++.+ |. + |. |.+||+.++ +||+||+++..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 4567899999999877643 43 3 65 999999875 99999999987654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.44 E-value=4.3e-08 Score=67.07 Aligned_cols=46 Identities=28% Similarity=0.332 Sum_probs=35.8
Q ss_pred CCCccCccccccccCC----Cc----cccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 204 GADQCCVICKEEMGGG----RD----VCSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 204 ~~~~eCaIClEEf~~G----e~----v~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
+++.+|+||+++|... +. .|.+ |. |.+|++.+++||+||.++..++
T Consensus 1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 3567899999999753 22 2443 33 9999999999999999998765
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.42 E-value=6.3e-08 Score=67.84 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCccCccccccccC----CCcc----ccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGG----GRDV----CSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~----Ge~v----~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
++.+|+||+++|.. ++.+ |.+ |. |.+|++.+++||+||.++..++
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 46789999999975 2322 443 33 9999999999999999998654
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.9e-08 Score=69.97 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=40.6
Q ss_pred CCCccCccccccccCCCccccc--cc--chhhhhcCCCCCCCCCCCCCchhhhhcC
Q 024764 204 GADQCCVICKEEMGGGRDVCSG--SL--LMMFLERSNGCGTLSLKRAAAAVLMEND 255 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~~~E~~ 255 (263)
.+..+|+||++++..-...|.+ |. |.+|++.+++||+||.++...+..|.-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 13 TDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCC
T ss_pred CCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCC
Confidence 3568899999999872223443 33 9999999999999999999888766543
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.40 E-value=1.2e-07 Score=66.27 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCCccCccccccccCCC--ccccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGGGR--DVCSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge--~v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
+.+.+|+||++++.... ..|.+ |. |.+|++.+++||+||.++.....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 45678999999997532 33554 44 99999999999999999876433
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=2.5e-07 Score=69.46 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=40.4
Q ss_pred CCCCccCccccccccCCCc--cccc--cc--chhhhhcC--CCCCCCCCCCCCchhhh
Q 024764 203 AGADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERS--NGCGTLSLKRAAAAVLM 252 (263)
Q Consensus 203 ~~~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~--nTCPvCR~eLptdD~~~ 252 (263)
.+...+|+||++.+..|++ .|.+ |. |.+||+.+ ++||+||.+.+.+++.+
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 3456789999999998764 3555 66 99999998 99999999988766543
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2e-07 Score=64.53 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=34.0
Q ss_pred CCCccCccccccccCC----Cc----cccc--cc--chhhhhcCCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGG----RD----VCSG--SL--LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 204 ~~~~eCaIClEEf~~G----e~----v~~L--H~--I~pWL~~~nTCPvCR~eLpt 247 (263)
.+..+|+||+++|... +. .|.+ |. |..|++.+++||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3568899999999753 22 2443 33 99999999999999998863
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5.8e-07 Score=64.04 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCccCccccccccCCCc--cccc--cc--chhhhhcCCCCCCCCCCCCCchhhhh
Q 024764 205 ADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERSNGCGTLSLKRAAAAVLME 253 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~~~E 253 (263)
+...|+||++.|..--. .|.+ |. |..|++.+.+||+||.++...+...-
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 46789999999986322 3554 23 99999999999999999988776543
No 20
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.17 E-value=3.3e-07 Score=70.15 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=38.2
Q ss_pred cCCCCccCccccccccCC----Ccc----ccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 202 GAGADQCCVICKEEMGGG----RDV----CSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 202 i~~~~~eCaIClEEf~~G----e~v----~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
+.++..+|+||+++|... +.+ |.+ |. |.+||+.+++||+||..+..++.
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 456788999999999753 222 443 33 99999999999999999987653
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=7.6e-07 Score=63.24 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=36.0
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
++.+|+||++.|.... ..|.+ |. |..|++.+++||+||..+..++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 4678999999997542 23554 33 99999999999999999986654
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1.1e-06 Score=63.64 Aligned_cols=47 Identities=19% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCCccCccccccccCCCc-cccc---cc-----chhhhhcC---CCCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGGGRD-VCSG---SL-----LMMFLERS---NGCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~-v~~L---H~-----I~pWL~~~---nTCPvCR~eLptdD~ 250 (263)
.+..+|+||++.|..++. +..+ |. |..|++.+ .+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 346789999999997664 3233 54 99999986 899999999877654
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.09 E-value=7.7e-07 Score=68.08 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=36.7
Q ss_pred CCCccCccccccccC----CCccccc---cc-----chhhhhcCCCCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGG----GRDVCSG---SL-----LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~----Ge~v~~L---H~-----I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
.+..+|+||+++|.. |+.+..+ |. |.+||+.+++||+||..+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 356889999999974 2333223 54 99999999999999999987665
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.05 E-value=2.3e-06 Score=61.45 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=41.6
Q ss_pred CCccCccccccccCCCc-c-ccc--cc--chhhhhcC--CCCCCCCCCCCCchhhhhcCCC
Q 024764 205 ADQCCVICKEEMGGGRD-V-CSG--SL--LMMFLERS--NGCGTLSLKRAAAAVLMENDNN 257 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~-v-~~L--H~--I~pWL~~~--nTCPvCR~eLptdD~~~E~~~~ 257 (263)
+...|+||++.|..--. . |.+ |. |..|++.+ .+||+||.++...|....|+.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~sg 74 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPSSG 74 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTTTC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCCCC
Confidence 46789999999986432 2 554 23 99999876 7999999998888888777754
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.86 E-value=4e-06 Score=66.93 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=34.7
Q ss_pred CccCccccccccCCC-ccccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 206 DQCCVICKEEMGGGR-DVCSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
+..|+||++.|...- ..|.| |. |..|++.+++||+||..+....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 567999999997532 23554 22 9999999999999999997653
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.85 E-value=6.1e-06 Score=61.85 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCccCccccccccCCCc--cccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
+...|+||++.|..... .|.+ |. |..|++.+.+||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 35789999999986432 3665 23 9999999999999999998744
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.1e-05 Score=56.29 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=34.5
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhh-hcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFL-ERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL-~~~nTCPvCR~eLptdD 249 (263)
+...|+||++.|.... ..|.+ |. |..|+ +.+.+||+||.++..++
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4688999999997543 33443 22 99999 56779999999998765
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.84 E-value=1.2e-05 Score=57.25 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=35.6
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhc-------CCCCCCCCCCCCCchhh
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLER-------SNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~-------~nTCPvCR~eLptdD~~ 251 (263)
+...|+||++.|..-. ..|. |. |..|++. ..+||+||.++..++..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred cCCCCcCCCcccCCeeECCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 4678999999997532 2344 44 9999987 78999999999876543
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.82 E-value=9.2e-06 Score=57.88 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhhhc------CCCCCCCCCCCCCchhh
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFLER------SNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~------~nTCPvCR~eLptdD~~ 251 (263)
++.+|+||++.|.... ..|.+ +. |..|++. ..+||+||..+..++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 4678999999997543 23554 22 9999998 88999999999876543
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.3e-05 Score=56.41 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCccCccccccccCCC-ccccc--cc--chhhhh---cCCCCCCCCCCCCCch
Q 024764 204 GADQCCVICKEEMGGGR-DVCSG--SL--LMMFLE---RSNGCGTLSLKRAAAA 249 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~---~~nTCPvCR~eLptdD 249 (263)
.+...|+||++.|..-. ..|.+ |. |..|++ .+.+||+||.++..++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34688999999998532 23443 22 999997 5679999999988765
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=2e-05 Score=56.06 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=35.7
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhhhc------CCCCCCCCCCCCCchhh
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFLER------SNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~------~nTCPvCR~eLptdD~~ 251 (263)
+..+|+||++.|..-. ..|.+ +. |..|++. ..+||+||..+..++..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 4688999999997522 23443 22 9999988 89999999999876543
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=1.6e-05 Score=57.46 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhhhcCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~~nTCPvCR~eLp 246 (263)
....|+||++.|..-- ..|.+ |. |..|++.+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999996532 23443 22 9999999999999999986
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.68 E-value=1.4e-05 Score=60.67 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=34.9
Q ss_pred CCccCccccccccCCC--ccccc--cc--chhhhhcC-CCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGGGR--DVCSG--SL--LMMFLERS-NGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge--~v~~L--H~--I~pWL~~~-nTCPvCR~eLptdD~ 250 (263)
+...|+||++.|..-- ..|.+ |. |..|++.+ .+||+||..+..++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 3578999999997532 23443 22 99999988 699999999976654
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.66 E-value=1.7e-05 Score=56.65 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhc-CCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLER-SNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~-~nTCPvCR~eLptdD 249 (263)
+...|+||++.|..-- ..|. |. |..|++. +.+||+||.++..++
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~Cg-H~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTG-QTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTT-EEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccCCEEcCCC-CeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4678999999997532 2344 54 9999997 899999999997654
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.66 E-value=1.4e-05 Score=60.86 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=36.1
Q ss_pred CCccCccccccccCCCc--cccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
++..|+||++.|..--. .|.+ |. |..|++.+.+||+||..+...+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCG
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCc
Confidence 46789999999975322 4554 22 99999999999999999987643
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.49 E-value=3.4e-05 Score=62.80 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=34.2
Q ss_pred CccCccccccccCCCc--cccc--cc--chhhhhc-CCCCCCCCCCCCCch
Q 024764 206 DQCCVICKEEMGGGRD--VCSG--SL--LMMFLER-SNGCGTLSLKRAAAA 249 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~-~nTCPvCR~eLptdD 249 (263)
...|+||++.|..--. .|.+ |. |..|++. +.+||+||..+...+
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcc
Confidence 5689999999986322 4564 33 9999997 889999999996544
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.48 E-value=5.6e-05 Score=56.99 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=34.2
Q ss_pred CccCccccccccCCC-ccccc--cc--chhhhhcCC---CCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGR-DVCSG--SL--LMMFLERSN---GCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~~n---TCPvCR~eLptdD~ 250 (263)
...|+||++.|..-. ..|.+ +. |..|++.++ +||+||..+...+.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 468999999997532 33554 22 999999765 99999999987653
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.46 E-value=5e-05 Score=52.77 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCccCccccc-cccCCCc-----cccccc-----chhhhhc-CCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKE-EMGGGRD-----VCSGSL-----LMMFLER-SNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClE-Ef~~Ge~-----v~~LH~-----I~pWL~~-~nTCPvCR~eLptdD 249 (263)
++..|+||++ .|..... .|. |. |..|+.+ +.+||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 7765432 355 44 9999654 578999999997654
No 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.43 E-value=3.9e-05 Score=54.43 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=33.4
Q ss_pred CCccCccccccccCCCc---cccccc------chhhhhcCCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGRD---VCSGSL------LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~---v~~LH~------I~pWL~~~nTCPvCR~eLpt 247 (263)
++.+|+||++++...-- .|. |. +..|.+.+++||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-HLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-EEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-ChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 46789999999876432 355 54 99999999999999998853
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.28 E-value=0.00019 Score=53.28 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCccCccccccccCCCc-c----ccccc-----chhhh-hcCCCCCCCCCCCCCchhhhhcC
Q 024764 204 GADQCCVICKEEMGGGRD-V----CSGSL-----LMMFL-ERSNGCGTLSLKRAAAAVLMEND 255 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~-v----~~LH~-----I~pWL-~~~nTCPvCR~eLptdD~~~E~~ 255 (263)
.++..|+||+|.|...+. + |. |. |..|. +..+.||+||..+...+..|.+-
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG-H~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~ 70 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG-YQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS-CCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSC
T ss_pred ccCCcCCccCccCccccccccccCCC-CCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccC
Confidence 356789999999975432 2 55 43 66665 45789999999999887766543
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.25 E-value=8.1e-05 Score=57.71 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCC-CCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSN-GCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~n-TCPvCR~eLptdD 249 (263)
+...|+||++.|...- ..|. |. |..|++.++ +||+||..+..++
T Consensus 17 ~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCG-HRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcCeEECCcC-ChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4678999999997532 2355 53 999999876 9999999998754
No 42
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.18 E-value=0.00018 Score=51.33 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=30.0
Q ss_pred CCccCccccccccCCC--cccc------c-cc--chhhhhc--CCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGR--DVCS------G-SL--LMMFLER--SNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge--~v~~------L-H~--I~pWL~~--~nTCPvCR~eLpt 247 (263)
+...|.||+++.. ++ ..|. . |. +.+|+.. +++||+||+++..
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4678999999832 22 2222 1 66 9999975 7899999998764
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.18 E-value=0.00015 Score=53.24 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCccCccccccccCCC-cc-ccccc----chhhhhcC--CCCCCCCCCCCCc
Q 024764 205 ADQCCVICKEEMGGGR-DV-CSGSL----LMMFLERS--NGCGTLSLKRAAA 248 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v-~~LH~----I~pWL~~~--nTCPvCR~eLptd 248 (263)
+...|+||++.|..-- .. |.+.+ |..|++.+ .+||+||..+...
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 4688999999998532 23 55412 99999765 5999999997433
No 44
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.15 E-value=0.00015 Score=56.45 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=32.3
Q ss_pred CccCccccccccCCC-ccccc--cc--chhhhhcCC-CCCCCCCCCCC
Q 024764 206 DQCCVICKEEMGGGR-DVCSG--SL--LMMFLERSN-GCGTLSLKRAA 247 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~~n-TCPvCR~eLpt 247 (263)
...|+||++.|..-- ..|.| +. |..|++.++ +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 578999999998432 24554 22 999998655 99999999976
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.15 E-value=0.00017 Score=55.39 Aligned_cols=44 Identities=16% Similarity=0.364 Sum_probs=34.7
Q ss_pred CccCccccccccCCC-ccccccc-----chhhhhc-CCCCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL-----LMMFLER-SNGCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~-~nTCPvCR~eLptdD~ 250 (263)
...|+||++.|..-. ..|. |. |..|++. ..+||+||..+..++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCK-HLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCcEEcCCC-CcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 578999999997532 2344 44 9999997 7899999999987664
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.13 E-value=0.00015 Score=59.26 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.9
Q ss_pred CccCccccccccCCC-ccccccc-----chhhhhcCC-CCCCCCCCCCCch
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSN-GCGTLSLKRAAAA 249 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~n-TCPvCR~eLptdD 249 (263)
...|+||++.|..-. ..|. |. |..|++..+ +||+||..+...+
T Consensus 78 ~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 127 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECF-HNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTS-CEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred CCEeecCChhhcCCEEcCCC-CchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence 578999999997532 3455 43 999999766 8999999998763
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.10 E-value=0.00022 Score=53.07 Aligned_cols=44 Identities=7% Similarity=-0.142 Sum_probs=34.5
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~nTCPvCR~eLptdD 249 (263)
....|+||++-|+.=- ..|. |. |..|++.+.+||+||..+..++
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSG-TVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcCCeECCCC-CEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 3688999999997521 1233 54 9999999999999999998654
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.10 E-value=0.00039 Score=53.78 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=38.7
Q ss_pred CchhhHHHHHcCCceecCCCCccCccccccccCCCc--cccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 186 DVAAAVAAVVRLPSVDGAGADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 186 ~pPASkaaI~aLP~V~i~~~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
.-+++.+.++.+. +...|+||++.|..--. .|.+ +. |..|++ .+||+||..+...+
T Consensus 8 ~~~~~~~~~~~l~------~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 8 AWAHSRAALDRLE------KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp CCHHHHHHHHHHH------HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CccchHHHHHhch------hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 3344555555442 35789999999975432 3664 12 999998 89999999986543
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.04 E-value=0.00028 Score=54.21 Aligned_cols=45 Identities=9% Similarity=-0.209 Sum_probs=34.5
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~nTCPvCR~eLptdD 249 (263)
....|+||++-|+.=- ..|.-|. |.+||+.+.+||+||..+..++
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 4678999999997422 2233143 9999999999999999998654
No 50
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.04 E-value=0.00014 Score=69.23 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=35.0
Q ss_pred CCccCccccccccC-CC---cccc-----c--cc--chhhhhcC-----------CCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGG-GR---DVCS-----G--SL--LMMFLERS-----------NGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~-Ge---~v~~-----L--H~--I~pWL~~~-----------nTCPvCR~eLptdD~ 250 (263)
+..+|+||.+.+.. |+ .+|. + |. |.+||+.. ++||.||.++.+.=.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 46789999999987 43 3343 3 55 99999863 679999999886544
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.03 E-value=0.00015 Score=55.56 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhhhhc-CCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMFLER-SNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~~-~nTCPvCR~eLpt 247 (263)
++..|+||++.|..-- ..|.| +. |..|++. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3678999999997421 24554 22 9999987 7799999999875
No 52
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.00047 Score=46.11 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=27.7
Q ss_pred CCccCccccccccCCC-ccccc--cc--chhh---hhcCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGR-DVCSG--SL--LMMF---LERSNGCGTL 241 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~L--H~--I~pW---L~~~nTCPvC 241 (263)
+...|+||++.|.... ..|.+ |. |..| ++.+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4678999999998642 23443 22 9999 5678999998
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.00 E-value=0.00021 Score=68.03 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=36.0
Q ss_pred CccCccccccccCCC-ccccc--cc--chhhhh-cCCCCCCCCCCCCCchhh
Q 024764 206 DQCCVICKEEMGGGR-DVCSG--SL--LMMFLE-RSNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~-~~nTCPvCR~eLptdD~~ 251 (263)
..+|+||++.+..-. ..|.| |. |..|++ .+.+||+||.++...+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 478999999996532 34664 33 999999 799999999999876543
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.91 E-value=0.00036 Score=53.81 Aligned_cols=44 Identities=7% Similarity=-0.123 Sum_probs=34.4
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~nTCPvCR~eLptdD 249 (263)
....|+||++-|..=- ..|. |. |..|+..+.+||+||..+..++
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTT-EEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCCeECCCC-CEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4678999999997421 1233 54 9999999999999999998754
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00057 Score=46.93 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCCccCccccccccCCC-ccccc--cc--chhhhh---cCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGR-DVCSG--SL--LMMFLE---RSNGCGTL 241 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~---~~nTCPvC 241 (263)
.++..|+||++.|..-. ..|.+ |. |..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35688999999998532 23443 22 999998 56799998
No 56
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.89 E-value=0.00028 Score=50.25 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=34.5
Q ss_pred CccCccccccccCCCcccc-c--cc-----chhhhhcCCCCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGRDVCS-G--SL-----LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge~v~~-L--H~-----I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
...|+||++-|. +.|+. - |. |.+||+.+++||++|.++..+|.
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 467999999998 34444 2 65 99999999999999999977664
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.69 E-value=0.0005 Score=48.52 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCccCccccccccCCCc---cccccc------chhhhhcCCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGRD---VCSGSL------LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~---v~~LH~------I~pWL~~~nTCPvCR~eLpt 247 (263)
...+|+||++.+...-- .|. |. +..|.+.++.||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-HLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-EEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCC-CHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 36789999998865432 344 64 88999889999999998853
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.47 E-value=0.0024 Score=43.65 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.0
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~nTCPvCR~eLptdD 249 (263)
+...|+||++.|..-. ..|. |. |..| ..+||+||.++...+
T Consensus 5 ~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCL-HTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTS-CCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCeEEcCCC-CcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4678999999998532 2244 53 7775 779999999987654
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.39 E-value=0.0015 Score=55.27 Aligned_cols=44 Identities=14% Similarity=-0.047 Sum_probs=32.6
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcC-CCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERS-NGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~-nTCPvCR~eLptdD 249 (263)
....|+||++-|..=- ..|. |. |..||+.+ .+||+||..+...+
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~g-h~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSC-CEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcCCeECCCC-CEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4678999999997421 2244 44 99999874 45999999997654
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.29 E-value=0.0012 Score=53.69 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=33.8
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcCC-CCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSN-GCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~n-TCPvCR~eLptdD 249 (263)
+...|+||++.|..-- ..|. |. |..|++..+ +||+||..+..++
T Consensus 17 ~~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCG-HRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCChhhcCcEECCCC-CHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 4688999999997531 1233 65 999998755 9999999998764
No 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.27 E-value=0.00052 Score=55.68 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCCccCccccccccCCC-ccccccc-----chhhhhcCC-CCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSN-GCGTLSLKRAA 247 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~n-TCPvCR~eLpt 247 (263)
.+...|+||++.|..-- ..|. |. |..|++..+ +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCG-HRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCC-CccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34688999999997542 2355 54 999998776 99999998643
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.73 E-value=0.003 Score=47.52 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCccCccccccccCCCc--cccccc-----chhhhhcC------CCCCC--CCCC-CCCch
Q 024764 205 ADQCCVICKEEMGGGRD--VCSGSL-----LMMFLERS------NGCGT--LSLK-RAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~--v~~LH~-----I~pWL~~~------nTCPv--CR~e-LptdD 249 (263)
....|+||++.|..=-. .|. |. |..|++.+ .+||+ |+.. +..++
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred cEeECcCcCchhcCCEEcCCCC-CeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 35789999999984221 144 54 99999875 49999 9977 65543
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.44 E-value=0.0045 Score=44.55 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCccCccccccccCCC-cccccc-c----chhhhhcCCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGS-L----LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH-~----I~pWL~~~nTCPvCR~eLptdD 249 (263)
++..|+||++.+..-- ..|.|. + +..| .+||+||..+...-
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcE
Confidence 3568999999986522 235532 2 8888 99999999987543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.012 Score=42.23 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=28.2
Q ss_pred CccCccccccccCCC-ccccccc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
..+|+||++.+..-- ..|. |. =..=+++...||+||.++...-.
T Consensus 25 ~~~C~IC~~~~~~~~~~pCg-H~~~C~~C~~~~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCG-HLVTCKQCAEAVDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSC-CCCBCHHHHHHCSBCTTTCCBCCCCCB
T ss_pred CCCCCcCCCCCCCEEEecCC-CHHHHHHHhhCCCCCccCCceecCcEE
Confidence 568999999986422 2344 54 11112345899999999876433
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.40 E-value=0.0071 Score=51.82 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=32.6
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhcC-CCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLERS-NGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~-nTCPvCR~eLptdD 249 (263)
....|+||++-|..=- ..|. |. |..|+..+ .+||+||..+..++
T Consensus 105 ~~f~CPI~~elm~DPV~~~~G-htfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCCCCeECCCC-CEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 3688999999998411 1233 54 99999874 47999999997654
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.42 E-value=0.028 Score=40.25 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=31.1
Q ss_pred CCCccCccccccccCCC-ccccccc--chhhhhcCCCCCCCCCCCCCchhhhh
Q 024764 204 GADQCCVICKEEMGGGR-DVCSGSL--LMMFLERSNGCGTLSLKRAAAAVLME 253 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~LH~--I~pWL~~~nTCPvCR~eLptdD~~~E 253 (263)
.+..+|.||++.+..-- ..|. |. =..=.++...||+||..+...-..|-
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCg-H~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCR-HTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTT-BCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCcCcCCCCEEEECCC-ChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 35788999999876421 2243 55 11112246899999999877655543
No 67
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.71 E-value=0.036 Score=48.88 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCCCccCccccccccCCCcc--ccc--cc--chhhhhcCC--CCCCCCCCCCCchh
Q 024764 203 AGADQCCVICKEEMGGGRDV--CSG--SL--LMMFLERSN--GCGTLSLKRAAAAV 250 (263)
Q Consensus 203 ~~~~~eCaIClEEf~~Ge~v--~~L--H~--I~pWL~~~n--TCPvCR~eLptdD~ 250 (263)
.+.-.+|.||++-...|... |.. |. +..|++.++ .||.|+.+-+.+.+
T Consensus 177 ~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 34567899999999987532 555 66 999998765 99999998876643
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.37 E-value=0.036 Score=41.04 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCccCccccccccCCCcc----ccccc-----chhhhhc--------CCCCCC--CCCC--CCCc
Q 024764 205 ADQCCVICKEEMGGGRDV----CSGSL-----LMMFLER--------SNGCGT--LSLK--RAAA 248 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~v----~~LH~-----I~pWL~~--------~nTCPv--CR~e--Lptd 248 (263)
+..+|+||++++...+.+ |. |. +..|++. .-+||. ||.. ++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 457899999999865543 55 54 7777653 248999 9998 6543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.042 Score=50.17 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=32.5
Q ss_pred CccCccccccccCCC--ccccccc-----chhhhhcC--CCCCC--CCCCCCCch
Q 024764 206 DQCCVICKEEMGGGR--DVCSGSL-----LMMFLERS--NGCGT--LSLKRAAAA 249 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge--~v~~LH~-----I~pWL~~~--nTCPv--CR~eLptdD 249 (263)
...|+||++-|..=- ..|. |. |..|++.+ .+||+ ||..+...|
T Consensus 181 el~CPIcl~~f~DPVts~~CG-HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCN-HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSC-CEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeECcCccCcccCCeeeCCCC-CcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 678999999996422 2345 54 99999865 57999 999887655
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=91.73 E-value=0.058 Score=50.04 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=29.9
Q ss_pred CCccCccccccccCCC-cccccc-c----chhhhhcCCCCCCCCCCCCCc
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGS-L----LMMFLERSNGCGTLSLKRAAA 248 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH-~----I~pWL~~~nTCPvCR~eLptd 248 (263)
++..|+||++.+..-- ..|.|. + +..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4578999999997532 246653 2 8888 8999999988654
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=90.60 E-value=0.063 Score=39.33 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=29.1
Q ss_pred CccCccccccccCCC-ccccccc------chhhhhcCCCCCCCCCCCCCchhhh
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL------LMMFLERSNGCGTLSLKRAAAAVLM 252 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~------I~pWL~~~nTCPvCR~eLptdD~~~ 252 (263)
+..|+||++.+..-- ..|. |. +..| ..||+||..+...-..|
T Consensus 18 ~~~C~IC~~~~~~~v~~pCg-H~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCG-HTVCCESCAAQL----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTC-BCCBCHHHHTTC----SBCTTTCCBCCEEEECB
T ss_pred CCEeEEeCcccCcEEEECCC-CHHHHHHHHHhc----CcCCCCCchhhCeEEEE
Confidence 468999999876421 2244 54 6555 49999999987765444
No 72
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=48.11 E-value=4.4 Score=25.43 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCchhh
Q 024764 235 SNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 235 ~nTCPvCR~eLptdD~~ 251 (263)
.-+||+|+.++|.-+..
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 34799999999877654
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=47.61 E-value=6 Score=31.54 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=34.5
Q ss_pred cCccccccccC-CC-ccccccc-----chhhh-hcCCCCCCCCCCCCCchhhhhcCCCceecc
Q 024764 208 CCVICKEEMGG-GR-DVCSGSL-----LMMFL-ERSNGCGTLSLKRAAAAVLMENDNNAIIAC 262 (263)
Q Consensus 208 eCaIClEEf~~-Ge-~v~~LH~-----I~pWL-~~~nTCPvCR~eLptdD~~~E~~~~~~~~~ 262 (263)
-|.+|--.++. |+ -.|. |. +..|- +..++||.||.++..-+. -.+|.|..|
T Consensus 3 fC~~C~~Pi~iygRmIPCk-HvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~---~~~~~if~C 61 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCK-HVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ---CTRGSLFMC 61 (101)
T ss_dssp BCTTTCSBCSEEEEEETTC-CEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE---EEGGGCCCC
T ss_pred ecCccCCCeEEEeeecccc-ccHHHHHHHHHHhccCCCCcCcCCeeeeeEE---eccCCEEEC
Confidence 47788777763 43 2355 66 88887 457999999999875544 344555554
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=41.05 E-value=10 Score=30.27 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=34.3
Q ss_pred CccCccccccccCCCccccc-cc-----chhhhhcCCCCCCCCCCCCCchhhhh
Q 024764 206 DQCCVICKEEMGGGRDVCSG-SL-----LMMFLERSNGCGTLSLKRAAAAVLME 253 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge~v~~L-H~-----I~pWL~~~nTCPvCR~eLptdD~~~E 253 (263)
-..|-.|.-+++. .|.-. |+ +.--|..++.||+|.+.+|+.=.+.+
T Consensus 28 ~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 28 PQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred cccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 5679999877762 33333 76 77889999999999999998655443
No 75
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.28 E-value=10 Score=24.71 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCchhh
Q 024764 237 GCGTLSLKRAAAAVL 251 (263)
Q Consensus 237 TCPvCR~eLptdD~~ 251 (263)
.||.|...+.+.+..
T Consensus 7 iCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 7 ICPQCMKSLGSADEL 21 (34)
T ss_dssp ECTTTCCEESSHHHH
T ss_pred CCcHHHHHcCCHHHH
Confidence 477777777666653
No 76
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=25.57 E-value=19 Score=27.79 Aligned_cols=20 Identities=5% Similarity=-0.167 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCchhhhhc
Q 024764 235 SNGCGTLSLKRAAAAVLMEN 254 (263)
Q Consensus 235 ~nTCPvCR~eLptdD~~~E~ 254 (263)
..-||.|+.+++.=...+++
T Consensus 40 ~~~c~~C~~e~~~l~~~~~~ 59 (157)
T 4g2e_A 40 AAFTQVCTKEMCTFRDSMAK 59 (157)
T ss_dssp CTTCCC------CCSCGGGG
T ss_pred CCCCCccccchhhccccccc
Confidence 34599999999877665543
No 77
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.70 E-value=17 Score=22.94 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCch
Q 024764 236 NGCGTLSLKRAAAA 249 (263)
Q Consensus 236 nTCPvCR~eLptdD 249 (263)
..||+|.+-+|+.-
T Consensus 7 vqcpvcqq~mpaah 20 (29)
T 3vhs_A 7 VQCPVCQQMMPAAH 20 (29)
T ss_dssp EECTTTCCEEEGGG
T ss_pred eeChHHHHhCcHHH
Confidence 45888888777653
No 78
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.57 E-value=18 Score=26.30 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=30.7
Q ss_pred CCccCccccccc-cCCCcccccccchhhhhcCCCCCCCCCCCCCchhhh
Q 024764 205 ADQCCVICKEEM-GGGRDVCSGSLLMMFLERSNGCGTLSLKRAAAAVLM 252 (263)
Q Consensus 205 ~~~eCaIClEEf-~~Ge~v~~LH~I~pWL~~~nTCPvCR~eLptdD~~~ 252 (263)
....|.+|-..| ..-..... |...- =++.-.|+.|-+.........
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~-H~~~h-~~k~~~C~~Cgk~F~~~~~L~ 79 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKK-HMENC-KQEMFTCHHCGKQLRSLAGMK 79 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHH-HHHHH-CCCCCCCSSSCCCCSSHHHHH
T ss_pred CCcCCCCCCCCcccCHHHHHH-HHHHH-CCCCeECCCCCCeeCCHHHHH
Confidence 356899999999 65333322 55111 356678999999887766543
No 79
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.17 E-value=79 Score=21.66 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=35.0
Q ss_pred CCCccCccccccccCCCcccccccchhhhhcCCCCCCCCCCCCCchhhhhcCCCce
Q 024764 204 GADQCCVICKEEMGGGRDVCSGSLLMMFLERSNGCGTLSLKRAAAAVLMENDNNAI 259 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v~~LH~I~pWL~~~nTCPvCR~eLptdD~~~E~~~~~~ 259 (263)
+....|+.|.+.+..++.+..+ =..|=...-.|-.|+..|... ..++ ++|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~--~~~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~ 58 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSL--GKDWHKFCLKCERCSKTLTPG-GHAE-HDGKP 58 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEET--TEEEETTTCBCSSSCCBCCTT-SCEE-ETTEE
T ss_pred CCCCCCcCCCCEeECCeEEEEC--CeEeeCCCCCCCCCCCccCCC-ceEe-ECCEE
Confidence 3457899999999877765433 234556778899999999843 3333 34444
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=20.07 E-value=1.2e+02 Score=23.89 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCccCccccccccC---CCccccccc----------chhhhhcCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGG---GRDVCSGSL----------LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 205 ~~~eCaIClEEf~~---Ge~v~~LH~----------I~pWL~~~nTCPvCR~eLp 246 (263)
+...|-||-++... |+.-..-|. =..+=+.+.+||-|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 46789999999863 442111122 3444567999999987765
Done!