Query 024764
Match_columns 263
No_of_seqs 146 out of 486
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 14:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024764.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024764hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyma_ g.44.1.1 (A:) EL5 RING 99.2 7.6E-12 5.5E-16 86.8 3.5 43 204-246 3-54 (55)
2 d1chca_ g.44.1.1 (A:) Immediat 98.7 3.4E-09 2.5E-13 75.0 3.2 43 205-247 4-52 (68)
3 d1ur6b_ g.44.1.1 (B:) Not-4 N- 98.5 1.3E-08 9.2E-13 69.1 2.4 42 207-248 1-52 (52)
4 d3dplr1 g.44.1.1 (R:19-106) RI 98.5 2.1E-08 1.6E-12 74.0 3.1 43 204-246 19-84 (88)
5 d1v87a_ g.44.1.1 (A:) Deltex p 98.4 7.8E-08 5.7E-12 72.7 3.3 44 205-248 24-95 (114)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 98.3 1E-07 7.3E-12 67.0 2.0 45 205-249 2-57 (65)
7 d1fbva4 g.44.1.1 (A:356-434) C 98.1 5.9E-07 4.3E-11 65.2 3.1 47 204-250 21-73 (79)
8 d2baya1 g.44.1.2 (A:1-56) Pre- 98.1 3.3E-07 2.4E-11 62.6 1.2 42 208-250 2-50 (56)
9 d1vyxa_ g.44.1.3 (A:) IE1B pro 97.9 2.7E-06 2E-10 58.2 2.9 43 204-246 4-58 (60)
10 d1jm7b_ g.44.1.1 (B:) bard1 RI 97.6 1.6E-05 1.2E-09 58.5 3.9 57 185-249 7-69 (97)
11 d1bora_ g.44.1.1 (A:) Acute pr 97.5 3E-05 2.2E-09 53.3 3.5 42 206-250 6-52 (56)
12 d1jm7a_ g.44.1.1 (A:) brca1 RI 97.4 3.3E-05 2.4E-09 57.4 3.0 43 206-249 21-72 (103)
13 d1rmda2 g.44.1.1 (A:1-86) V(D) 97.3 5.2E-05 3.8E-09 56.2 2.4 44 206-250 23-73 (86)
14 d1wgma_ g.44.1.2 (A:) Ubiquiti 96.9 0.0002 1.4E-08 53.5 2.8 46 205-250 21-72 (98)
15 d2c2la2 g.44.1.2 (A:225-304) S 96.7 0.00036 2.7E-08 49.5 2.9 44 205-249 6-56 (80)
16 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 96.4 0.00078 5.7E-08 47.4 2.6 45 205-250 7-58 (78)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 92.4 0.02 1.5E-06 40.8 1.4 39 204-242 3-57 (94)
18 d1v6ga2 g.39.1.3 (A:42-81) Act 49.3 2.9 0.00021 26.8 1.2 16 208-223 2-17 (40)
19 d1fp0a1 g.50.1.2 (A:19-88) Nuc 27.6 26 0.0019 23.1 3.4 26 226-251 30-61 (70)
20 d1we9a_ g.50.1.2 (A:) PHD fing 25.8 8 0.00058 25.1 0.4 43 204-246 4-60 (64)
21 d2epqa1 g.37.1.1 (A:380-411) P 23.0 5.4 0.00039 24.3 -0.9 15 207-221 4-18 (32)
22 d1xvqa_ c.47.1.10 (A:) Thiol p 22.1 7.2 0.00052 29.2 -0.5 58 196-261 22-79 (166)
23 d2dlqa3 g.37.1.1 (A:63-92) GLI 21.1 12 0.00085 22.4 0.4 12 207-218 5-16 (30)
24 d1rutx4 g.39.1.3 (X:114-146) L 20.6 16 0.0012 22.3 1.0 14 237-250 1-14 (33)
No 1
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=99.15 E-value=7.6e-12 Score=86.79 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCccCccccccccCCCccccc-------cc--chhhhhcCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGRDVCSG-------SL--LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v~~L-------H~--I~pWL~~~nTCPvCR~eLp 246 (263)
+++.+|+||+++|..|+.+..+ |. |.+||+.+++||+||+++.
T Consensus 3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 54 (55)
T d1iyma_ 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence 4567899999999999877554 44 9999999999999999874
No 2
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=98.69 E-value=3.4e-09 Score=75.03 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=34.5
Q ss_pred CCccCccccccccCCC--ccccc--cc--chhhhhcCCCCCCCCCCCCC
Q 024764 205 ADQCCVICKEEMGGGR--DVCSG--SL--LMMFLERSNGCGTLSLKRAA 247 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge--~v~~L--H~--I~pWL~~~nTCPvCR~eLpt 247 (263)
.+.+|+||+++|.... ..|.+ |. |.+|++.+++||+||+++..
T Consensus 4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~ 52 (68)
T d1chca_ 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence 4678999999997542 34554 44 99999999999999999854
No 3
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.54 E-value=1.3e-08 Score=69.11 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=32.3
Q ss_pred ccCccccccccCCCcc-----ccc--cc--chhhhhc-CCCCCCCCCCCCCc
Q 024764 207 QCCVICKEEMGGGRDV-----CSG--SL--LMMFLER-SNGCGTLSLKRAAA 248 (263)
Q Consensus 207 ~eCaIClEEf~~Ge~v-----~~L--H~--I~pWL~~-~nTCPvCR~eLptd 248 (263)
.||+||+|+|..++.+ |.+ |. |.+|++. +++||+||..+..|
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d 52 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence 3799999999877653 333 44 9999986 55799999988653
No 4
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.51 E-value=2.1e-08 Score=73.99 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=32.9
Q ss_pred CCCccCccccccccCCCc-------------------cccc--cc--chhhhhcCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGRD-------------------VCSG--SL--LMMFLERSNGCGTLSLKRA 246 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~-------------------v~~L--H~--I~pWL~~~nTCPvCR~eLp 246 (263)
..+.+|+||+++|..... .|.+ |. |.+||+.+++||+||.+..
T Consensus 19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 84 (88)
T d3dplr1 19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 84 (88)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence 346679999999965321 2444 55 9999999999999999863
No 5
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.37 E-value=7.8e-08 Score=72.74 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCccCccccccccCCC-------------------ccccc--cc--chhhhhcC-----CCCCCCCCCCCCc
Q 024764 205 ADQCCVICKEEMGGGR-------------------DVCSG--SL--LMMFLERS-----NGCGTLSLKRAAA 248 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-------------------~v~~L--H~--I~pWL~~~-----nTCPvCR~eLptd 248 (263)
.+..|+||+++|.... ..|.| |. |..||+.+ .+||+||..+...
T Consensus 24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T d1v87a_ 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence 4678999999986421 12554 55 99999864 4899999876543
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.29 E-value=1e-07 Score=66.97 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCccCccccccccCCC-c-----cccc--cc--chhhhhc-CCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-D-----VCSG--SL--LMMFLER-SNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~-----v~~L--H~--I~pWL~~-~nTCPvCR~eLptdD 249 (263)
++..|+||++++..+. . .|.+ |. |..|++. +++||+||..+...+
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~ 57 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence 3678999999975443 2 2554 33 9999965 668999999987654
No 7
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.12 E-value=5.9e-07 Score=65.21 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCccCccccccccCCC-ccccc--cc--chhhhh-cCCCCCCCCCCCCCchh
Q 024764 204 GADQCCVICKEEMGGGR-DVCSG--SL--LMMFLE-RSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~L--H~--I~pWL~-~~nTCPvCR~eLptdD~ 250 (263)
+....|+||++++..-. ..|.+ |. |..||+ ++++||+||.++...+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~ 73 (79)
T d1fbva4 21 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73 (79)
T ss_dssp CCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred CCCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence 34467999999987421 23443 33 999997 56889999999986554
No 8
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.09 E-value=3.3e-07 Score=62.62 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=33.7
Q ss_pred cCccccccccCCC--ccccccc-----chhhhhcCCCCCCCCCCCCCchh
Q 024764 208 CCVICKEEMGGGR--DVCSGSL-----LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 208 eCaIClEEf~~Ge--~v~~LH~-----I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
.|+||++.|+.-- ..|. |. |.+||+++++||+||+++..+|-
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cG-h~fc~~cI~~~l~~~~~CP~c~~~l~~~dL 50 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSR-TIFEKSLLEQYVKDTGNDPITNEPLSIEEI 50 (56)
T ss_dssp CCTTTCSCCSSEEEETTTT-EEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred CCccCCchHHhcCccCCCC-CcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence 5999999997422 1234 54 99999999999999999988765
No 9
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=97.90 E-value=2.7e-06 Score=58.23 Aligned_cols=43 Identities=28% Similarity=0.569 Sum_probs=31.6
Q ss_pred CCCccCccccccccCCC-cccc-----c--cc--chhhhh--cCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGR-DVCS-----G--SL--LMMFLE--RSNGCGTLSLKRA 246 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge-~v~~-----L--H~--I~pWL~--~~nTCPvCR~eLp 246 (263)
++...|.||++++.... .++. + |. |..|++ .+++||+||.+..
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 34678999999987543 2232 2 55 999995 4669999999865
No 10
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.64 E-value=1.6e-05 Score=58.52 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=39.5
Q ss_pred CCchhhHHHHHcCCceecCCCCccCccccccccCCCc--cccc--cc--chhhhhcCCCCCCCCCCCCCch
Q 024764 185 RDVAAAVAAVVRLPSVDGAGADQCCVICKEEMGGGRD--VCSG--SL--LMMFLERSNGCGTLSLKRAAAA 249 (263)
Q Consensus 185 g~pPASkaaI~aLP~V~i~~~~~eCaIClEEf~~Ge~--v~~L--H~--I~pWL~~~nTCPvCR~eLptdD 249 (263)
|...-++++++.++. ...|+||++.|..--. .|.+ +. |..|+. +.||+||..+...|
T Consensus 7 ~~~~~~~~~l~~l~~------~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (97)
T d1jm7b_ 7 GAWAHSRAALDRLEK------LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (97)
T ss_dssp CCCHHHHHHHHHHHH------TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred cccHhHHHHHHhhhh------cCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence 344456666665542 4689999999975432 3554 22 999994 56999999887654
No 11
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.51 E-value=3e-05 Score=53.26 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=31.6
Q ss_pred CccCccccccccCCCc-cccc--cc--chhhhhcCCCCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGRD-VCSG--SL--LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge~-v~~L--H~--I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
..+|+||++.|..... .|.+ |. |..| +++||+||.+++...+
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred CCCCcccCcccCCCEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence 4689999999986542 3554 33 8877 7899999999986543
No 12
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.42 E-value=3.3e-05 Score=57.43 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=32.7
Q ss_pred CccCccccccccCCC-ccccccc-----chhhhhcCC---CCCCCCCCCCCch
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL-----LMMFLERSN---GCGTLSLKRAAAA 249 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~n---TCPvCR~eLptdD 249 (263)
..+|+||++.|..-- ..|. |. |..|++.++ .||+||.++...+
T Consensus 21 ~l~CpIC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (103)
T d1jm7a_ 21 ILECPICLELIKEPVSTKCD-HIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (103)
T ss_dssp HTSCSSSCCCCSSCCBCTTS-CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CcCCCccCchhCCeEEcCCC-CchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence 468999999997422 2355 44 999998764 8999999997655
No 13
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.26 E-value=5.2e-05 Score=56.24 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=32.5
Q ss_pred CccCccccccccCCC-ccccccc-----chhhhhcC-CCCCCCCCCCCCchh
Q 024764 206 DQCCVICKEEMGGGR-DVCSGSL-----LMMFLERS-NGCGTLSLKRAAAAV 250 (263)
Q Consensus 206 ~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~~-nTCPvCR~eLptdD~ 250 (263)
...|+||+|.|..-- ..|. |. |.+|++.+ .+||+||..+...|.
T Consensus 23 ~l~C~IC~~~~~~pv~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l 73 (86)
T d1rmda2 23 SISCQICEHILADPVETSCK-HLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (86)
T ss_dssp HTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CcCCccCCcchhcceecCCC-ChhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence 467999999997421 2344 65 99999754 589999998876553
No 14
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.92 E-value=0.0002 Score=53.47 Aligned_cols=46 Identities=9% Similarity=-0.152 Sum_probs=35.3
Q ss_pred CCccCccccccccCCCc-ccccc-c----chhhhhcCCCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGGGRD-VCSGS-L----LMMFLERSNGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge~-v~~LH-~----I~pWL~~~nTCPvCR~eLptdD~ 250 (263)
++..|+||++-|..=-. .+..| + |..||+.+++||+||..+..++.
T Consensus 21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L 72 (98)
T d1wgma_ 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence 36899999999985221 12324 3 99999999999999999877553
No 15
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.74 E-value=0.00036 Score=49.49 Aligned_cols=44 Identities=14% Similarity=-0.036 Sum_probs=32.7
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhc-CCCCCCCCCCCCCch
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLER-SNGCGTLSLKRAAAA 249 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~-~nTCPvCR~eLptdD 249 (263)
++..|+||++-|..=- ..|. |. |..||.. +.+||+||.++..++
T Consensus 6 ~~l~CpIc~~l~~dPv~~~cG-htfc~~ci~~~l~~~~~~cP~c~~~l~~~~ 56 (80)
T d2c2la2 6 DYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 56 (80)
T ss_dssp STTBCTTTCSBCSSEEECSSC-CEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred ccccCcCcCchhhhhcccCCc-CeecHHHHHHHHhcCCccCCCccccccccc
Confidence 4678999999997521 1233 54 9999975 568999999987654
No 16
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=96.38 E-value=0.00078 Score=47.38 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=33.9
Q ss_pred CCccCccccccccCCC-ccccccc-----chhhhhc-CCCCCCCCCCCCCchh
Q 024764 205 ADQCCVICKEEMGGGR-DVCSGSL-----LMMFLER-SNGCGTLSLKRAAAAV 250 (263)
Q Consensus 205 ~~~eCaIClEEf~~Ge-~v~~LH~-----I~pWL~~-~nTCPvCR~eLptdD~ 250 (263)
++..|+||++-|..=- ..|. |. |..|++. .++||+||..+..++.
T Consensus 7 ~~l~CpIc~~~m~dPV~~~cg-h~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l 58 (78)
T d1t1ha_ 7 EYFRCPISLELMKDPVIVSTG-QTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTT-EEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred ccCCCcCcCchhhCceEccCC-CcchHHHHHHHHHHCCCCCCcccccCCcccc
Confidence 4689999999997421 1233 64 9999986 4679999999987654
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.41 E-value=0.02 Score=40.75 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=27.3
Q ss_pred CCCccCccccccccCCCccccc---cc-----chhhhhcC--------CCCCCCC
Q 024764 204 GADQCCVICKEEMGGGRDVCSG---SL-----LMMFLERS--------NGCGTLS 242 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~v~~L---H~-----I~pWL~~~--------nTCPvCR 242 (263)
.+..+|+||++++...+.+..+ |. |..|++.. -+||.|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~ 57 (94)
T d1wima_ 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred CCCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence 3467899999999876643322 65 99998631 2699854
No 18
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.31 E-value=2.9 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.4
Q ss_pred cCccccccccCCCccc
Q 024764 208 CCVICKEEMGGGRDVC 223 (263)
Q Consensus 208 eCaIClEEf~~Ge~v~ 223 (263)
.|++|+..|..||+|.
T Consensus 2 vC~vCr~pFP~GDRVT 17 (40)
T d1v6ga2 2 VCAVCRLPFPPGDRVT 17 (40)
T ss_dssp SCSSSCCCCCSSSCEE
T ss_pred cccccCCCCCCCCeEE
Confidence 5888888888888763
No 19
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.63 E-value=26 Score=23.14 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=17.3
Q ss_pred cc--chhhhhc----CCCCCCCCCCCCCchhh
Q 024764 226 SL--LMMFLER----SNGCGTLSLKRAAAAVL 251 (263)
Q Consensus 226 H~--I~pWL~~----~nTCPvCR~eLptdD~~ 251 (263)
|. +.|.|.. .=.||.|+......+..
T Consensus 30 H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~~~ 61 (70)
T d1fp0a1 30 HLDCHLPALQDVPGEEWSCSLCHVLPDLKEED 61 (70)
T ss_dssp CTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSS
T ss_pred ccccCCCCcCcCCCCCEECcCCcCcCccCccc
Confidence 77 7777654 33599998776555443
No 20
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.78 E-value=8 Score=25.11 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCccCccccccccCCCc-c-ccc-----cc----c-hhhhh--cCCCCCCCCCCCC
Q 024764 204 GADQCCVICKEEMGGGRD-V-CSG-----SL----L-MMFLE--RSNGCGTLSLKRA 246 (263)
Q Consensus 204 ~~~~eCaIClEEf~~Ge~-v-~~L-----H~----I-~pWL~--~~nTCPvCR~eLp 246 (263)
+....|.||.+....++. | |.- |. | ..... ..-.||.|+..-.
T Consensus 4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~ 60 (64)
T d1we9a_ 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCC
Confidence 446789999988776653 2 333 65 2 11211 2457999986543
No 21
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00 E-value=5.4 Score=24.29 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=11.4
Q ss_pred ccCccccccccCCCc
Q 024764 207 QCCVICKEEMGGGRD 221 (263)
Q Consensus 207 ~eCaIClEEf~~Ge~ 221 (263)
.+|+||...|+..++
T Consensus 4 ~~cpic~qrfkrkdr 18 (32)
T d2epqa1 4 YSCPVCGLRFKRKDR 18 (32)
T ss_dssp SEETTTTEECSCHHH
T ss_pred cccchHHHHhhcccc
Confidence 578999988886553
No 22
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.06 E-value=7.2 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=35.3
Q ss_pred cCCceecCCCCccCccccccccCCCcccccccchhhhhcCCCCCCCCCCCCCchhhhhcCCCceec
Q 024764 196 RLPSVDGAGADQCCVICKEEMGGGRDVCSGSLLMMFLERSNGCGTLSLKRAAAAVLMENDNNAIIA 261 (263)
Q Consensus 196 aLP~V~i~~~~~eCaIClEEf~~Ge~v~~LH~I~pWL~~~nTCPvCR~eLptdD~~~E~~~~~~~~ 261 (263)
..|.+++.+.+.+ .|-+++|+. ..+. |.=| ...-||.|+.+++.-...+++.+-.|++
T Consensus 22 ~aP~F~L~~~~g~-~v~L~d~~G-k~vv----l~f~--~~~~~p~C~~e~~~l~~~~~~~g~~vv~ 79 (166)
T d1xvqa_ 22 PAPAFTLTGGDLG-VISSDQFRG-KSVL----LNIF--PSVDTPVCATSVRTFDERAAASGATVLC 79 (166)
T ss_dssp BCCCCEEECTTSC-EEEGGGGTT-SCEE----EEEC--SCCCSSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEECCCCC-EEehHHhCC-cEEE----EEee--ecccccccHHHHHHHhhhcccccccccc
Confidence 4566666433222 567777743 3221 1111 2446999999999888888887766654
No 23
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.12 E-value=12 Score=22.38 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=10.6
Q ss_pred ccCccccccccC
Q 024764 207 QCCVICKEEMGG 218 (263)
Q Consensus 207 ~eCaIClEEf~~ 218 (263)
..|++|+|-|+.
T Consensus 5 ftcs~cqe~f~r 16 (30)
T d2dlqa3 5 FTCSVCQETFRR 16 (30)
T ss_dssp EECSSSCCEESS
T ss_pred EEeHHHHHHHHH
Confidence 579999999986
No 24
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.60 E-value=16 Score=22.28 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCchh
Q 024764 237 GCGTLSLKRAAAAV 250 (263)
Q Consensus 237 TCPvCR~eLptdD~ 250 (263)
||-+||.++-..|-
T Consensus 1 tC~tC~n~LVPGDR 14 (33)
T d1rutx4 1 TCSTCRNRLVPGDR 14 (33)
T ss_dssp BCTTTCCBCCTTCE
T ss_pred CcccccccccCCce
Confidence 69999998866654
Done!