BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024765
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 113/186 (60%), Gaps = 13/186 (6%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
RR+VVTGLGA+TP+G FH + L G +G+ I FD S P RIAAE+ + G ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K ++ D+++ YAL+A + AL DAG+ + +LD R G ++G+ +GG+ +E
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMET----WE 113
Query: 190 A-----IKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATS 244
A ++ ++SPF+IP + NMASA +AM G+TGPS ++ TACA+ ++ +A
Sbjct: 114 AQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALR 173
Query: 245 HIIKGD 250
I G+
Sbjct: 174 MIQLGE 179
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 68 KERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG 127
+++R+VVTGLGA+TP+G+ + L+EG GI I FD S+ R E+K
Sbjct: 5 EKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQ 64
Query: 128 WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDG 187
++ K AK+ D++ +A+ A ++A+ DA + V EL+ GV+IG+ +GGL+VL D
Sbjct: 65 FLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQ 121
Query: 188 FEA-IKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHI 246
+ + SPF IP + NMAS + A++LG GP+ TACA+ + +I +A +
Sbjct: 122 QTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLV 181
Query: 247 IKG 249
G
Sbjct: 182 QNG 184
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 104/184 (56%), Gaps = 4/184 (2%)
Query: 68 KERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG 127
+ +R+V+TG+GA++P+G+D + L+GV GI I D + +A E+K+ +
Sbjct: 26 QNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIED 85
Query: 128 WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDG 187
I K A++ D++ YA+VA ++A+ DA + E R GV IGS +GG+
Sbjct: 86 HIDKKEARRMDRFTQYAIVAAREAVKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIA 142
Query: 188 F-EAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHI 246
+ + +++SPF++P + +MA+ +++DLG GP+ + TACA+ SI A +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIV 202
Query: 247 IKGD 250
+GD
Sbjct: 203 QRGD 206
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 68 KERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG 127
K R+VVTG G +P+G+ F SL G GI I FD S+F AAEI+
Sbjct: 22 KLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDK 81
Query: 128 WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDG 187
+ K + D Y +YAL A ++A+ A + + L++ R GVI+ S +GG++ + D
Sbjct: 82 YFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIED- 137
Query: 188 FEAIKVSY---KKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATS 244
+ +++ K++ P +P +L NMAS +AM G G SI+TAC+SSN +I +A
Sbjct: 138 -QVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFR 196
Query: 245 HI 246
I
Sbjct: 197 SI 198
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 68 KERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG 127
K R+VVTG G +P+G+ F SL G GI I FD S+F AAEI+
Sbjct: 21 KLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDK 80
Query: 128 WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDG 187
+ K + D Y +YAL A ++A+ A + + L++ R GVI+ S +GG++ + D
Sbjct: 81 YFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIED- 136
Query: 188 FEAIKVSY---KKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATS 244
+ +++ K++ P +P +L NMAS +AM G G SI+TAC+SSN +I +A
Sbjct: 137 -QVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFR 195
Query: 245 HI 246
I
Sbjct: 196 SI 197
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 107/183 (58%), Gaps = 4/183 (2%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTG+GAVTP+G+DA + +GV G++ + +FP +IAAE+K +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGF 188
+ K A+K D++ YA+ + + A+ D+G+ V + + +R GV IGS +GG +
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 189 EA-IKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
E + ++++SPF++P + + S +++ G G + + TACA++ SI +A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 248 KGD 250
+GD
Sbjct: 180 RGD 182
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 60 IITKHKEPKERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAE 119
++ + K R+VVTG G +P+G+ F SL G GI I FD S+F AAE
Sbjct: 13 LVPRGSHMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAE 72
Query: 120 IKSLSTGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMG 179
I+ + K + D Y +YAL A ++A+ A + L++ R GVI+ S +G
Sbjct: 73 IQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVAA---LNRDRFGVIVASGIG 129
Query: 180 GLRVLNDGFEAIKVSY---KKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSN 236
G++ + D + +++ K++ P +P +L NMAS +AM G G SI+TAC+SSN
Sbjct: 130 GIKEIED--QVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSN 187
Query: 237 YSILNATSHI 246
+I +A I
Sbjct: 188 DAIGDAFRSI 197
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTGLG ++P+G+ +LL G +GIS I FD S + T+ A +K +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAG--ITEQVSGELDKSRCGVIIGSAMGGLRVLND 186
IS K +K D ++ Y +VAG +A+ D+G ITE+ + +R G IGS +GGL ++ +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 187 GFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSH 245
++ +K+SPF++P ++ NM + L + G GPS SI+TAC S ++I +A
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 191
Query: 246 IIKGD 250
I GD
Sbjct: 192 IAYGD 196
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTGLG ++P+G+ +LL G +GIS I FD S + T+ A +K +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAG--ITEQVSGELDKSRCGVIIGSAMGGLRVLND 186
IS K +K D ++ Y +VAG +A+ D+G ITE+ + +R G IGS +GGL ++ +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 187 GFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSH 245
++ +K+SPF++P ++ NM + L + G GPS SI+TAC S ++I +A
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 191
Query: 246 IIKGD 250
I GD
Sbjct: 192 IAYGD 196
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTGLG ++P+G+ +LL G +GIS I FD S + T+ A +K +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAG--ITEQVSGELDKSRCGVIIGSAMGGLRVLND 186
IS K +K D ++ Y +VAG +A+ D+G ITE+ + +R G IGS +GGL ++ +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 116
Query: 187 GFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSH 245
++ +K+SPF++P ++ NM + L + G GPS SI+TAC S ++I +A
Sbjct: 117 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 176
Query: 246 IIKGD 250
I GD
Sbjct: 177 IAYGD 181
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTGLG ++P+G+ +LL G +GIS I FD S + T+ A +K +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAG--ITEQVSGELDKSRCGVIIGSAMGGLRVLND 186
IS K +K D ++ Y +VAG +A+ D+G ITE+ + +R G IGS +GGL ++ +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 187 GFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSH 245
++ +K+SPF++P ++ NM + L + G GPS SI+TA S ++I +A
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARI 191
Query: 246 IIKGD 250
I GD
Sbjct: 192 IAYGD 196
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+VVTGLG ++P+G+ +LL G +GIS I FD S + T+ A +K +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAG--ITEQVSGELDKSRCGVIIGSAMGGLRVLND 186
IS K +K D ++ Y +VAG +A+ D+G ITE+ + +R G IGS +GGL ++ +
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-----NATRIGAAIGSGIGGLGLIEE 131
Query: 187 GFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSH 245
++ +K+SPF++P ++ NM + L + G GPS SI+TA S ++I +A
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARI 191
Query: 246 IIKGD 250
I GD
Sbjct: 192 IAYGD 196
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 9/189 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG- 127
RR+V+TG+G VTPLG HL L+ G +GI + G + P +AA + S G
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 128 -----WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
++S K I A+ A + A+ D+G Q E D+ GV IG M L
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 137
Query: 183 VLNDGFEAIKV-SYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILN 241
V+++ + Y K+SPF++P L NMA+ +++ GP++++STAC + +++ +
Sbjct: 138 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGD 197
Query: 242 ATSHIIKGD 250
+ I GD
Sbjct: 198 SFRFIAHGD 206
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGG- 127
RR+V+TG+G VTPLG HL L+ G +GI + G + P +AA + S G
Sbjct: 26 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 85
Query: 128 -----WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
++S K I A+ A + A+ D+G Q E D+ GV IG M L
Sbjct: 86 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 143
Query: 183 VLNDGFEAIKV-SYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILN 241
V+++ + Y K+SPF++P L NMA+ +++ GP++++STA + +++ +
Sbjct: 144 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGD 203
Query: 242 ATSHIIKGD 250
+ I GD
Sbjct: 204 SFRFIAHGD 212
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R+V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 248 KG 249
G
Sbjct: 191 LG 192
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R+V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 248 KG 249
G
Sbjct: 179 LG 180
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 15/186 (8%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQ-----GFDCSEFPTRIAAEIKSLS 124
RR+VVTG+G V+ +G + SL E +GIS + GF C + +I+SL
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC-QVHGAPDIDIESL- 80
Query: 125 TGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVL 184
+ + + + + +A +A+ DAG+TE+ E+ R G+I+GS R +
Sbjct: 81 ----VDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTI 133
Query: 185 NDGFEAIKVSY-KKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNAT 243
D + + K++ PF +P ++++ ASA LA G +YSIS+ACA+SN+ I NA
Sbjct: 134 VDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAY 193
Query: 244 SHIIKG 249
I G
Sbjct: 194 EMIQYG 199
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 15/186 (8%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQ-----GFDCSEFPTRIAAEIKSLS 124
RR+VVTG+G V+ +G + SL E +GIS + GF C + +I+SL
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRC-QVHGAPDIDIESL- 63
Query: 125 TGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVL 184
+ + + + + +A +A+ DAG+TE+ E+ R G+I+GS R +
Sbjct: 64 ----VDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTI 116
Query: 185 NDGFEAIKVSY-KKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNAT 243
D + + K++ PF +P ++++ ASA LA G +YSIS+ACA+SN+ I NA
Sbjct: 117 VDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAY 176
Query: 244 SHIIKG 249
I G
Sbjct: 177 EMIQYG 182
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 248 KG 249
G
Sbjct: 179 LG 180
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 248 KG 249
G
Sbjct: 191 LG 192
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 248 KG 249
G
Sbjct: 179 LG 180
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+ACA+S + I NA I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 248 KG 249
G
Sbjct: 191 LG 192
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 10/189 (5%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIK-------S 122
RR+V+TGLG V+PL LL G +G + F+ + +IA I +
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 123 LSTGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
+ + PK +K D +++YA+ A +AL DAG + + D+ R GV+IGS +GG+
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 183 VLND-GFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILN 241
+ + G+ +++SPF+IP L N+AS +++ GP++S+ TACA+ ++I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 242 ATSHIIKGD 250
A I GD
Sbjct: 188 AARLIAFGD 196
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 26/202 (12%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDI-------QGFD-------CSEFPTR 115
RR+VVTGLG VTPLG L++G GI + + FD + ++
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 116 IAAEIKSLSTGG------WISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSR 169
+AA + S G W++ +K ++ YA+ A +AL DA + E +K R
Sbjct: 61 VAAFVPYGSNPGEFDEALWLN---SKAVANFIGYAVCAADEALRDAEWLP--TEEEEKER 115
Query: 170 CGVIIGSAMGGLRVLNDGFEAI-KVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSI 228
GV IG +G + + + + I + +++SPF+IP L NMAS ++M G+ GP+++
Sbjct: 116 TGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAA 175
Query: 229 STACASSNYSILNATSHIIKGD 250
TACA+ +SI +AT I GD
Sbjct: 176 VTACATGAHSIGDATRMIQFGD 197
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 8/188 (4%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIK-------S 122
RR+V+TGLG V+PL D LLEG +G+ I FD S+ +IAA I +
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 123 LSTGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
+ + K +K D +++YA+ A +AL DA + S E +I G
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPK-SDEDQICTGVLIGSGIGGIEG 124
Query: 183 VLNDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNA 242
++ G+ +++SPF+IP L N+AS +++ G GP++S+ TAC++ ++I +A
Sbjct: 125 IVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDA 184
Query: 243 TSHIIKGD 250
I GD
Sbjct: 185 ARLIALGD 192
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 71 RIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLST---GG 127
R+VVTG+G V+PLG L L+ G +G+ + E ++ ++ ++ GG
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 128 W-----ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
+ + K +K D+++ A+VA +AL +AG + E + R ++ S +GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 183 VLNDGFEAIKVS----YKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYS 238
L EA+++ +++SPF IP+ L+N+A+ +++ + GP TACA+S +
Sbjct: 143 GLA---EAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQA 199
Query: 239 ILNATSHIIKGD 250
I +A I G+
Sbjct: 200 IGDAMRMIRTGE 211
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 71 RIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLST---GG 127
R+VVTG+G V+PLG L L+ G +G+ + E ++ ++ ++ GG
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 128 W-----ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR 182
+ + K +K D+++ A+VA +AL +AG + E + R ++ S +GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFP 142
Query: 183 VLNDGFEAIKVS----YKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYS 238
L EA+++ +++SPF IP+ L+N+A+ +++ + GP TA A+S +
Sbjct: 143 GLA---EAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQA 199
Query: 239 ILNATSHIIKGD 250
I +A I G+
Sbjct: 200 IGDAMRMIRTGE 211
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 69 ERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGW 128
+RR+V+TG+G P G+ F L G T I FD S + +++AAE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLR------ 182
P+ + D+ +A+ ++A +G+ LD +R GV +GSA+
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREY 118
Query: 183 -VLNDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILN 241
+L+D +V +S Y + ++ A +A +G GP +ST C S S+ N
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 242 ATSHIIKG 249
A I +G
Sbjct: 179 AVRAIEEG 186
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R+V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+A A+S + I NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 178
Query: 248 KG 249
G
Sbjct: 179 LG 180
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R+V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+A A+S + I NA I
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 190
Query: 248 KG 249
G
Sbjct: 191 LG 192
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 5/182 (2%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLSTGGWI 129
+R V+TGLG V+ +G++ SL EG +GI+ Q S + + +K L T G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 130 SPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFE 189
K+ + IYA ++ ++A+ DAG++ + + R G+I GS G R G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 190 AIK--VSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
A++ K + P+ + ++ + SA LA G +YSIS+A A+S + I NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQ 178
Query: 248 KG 249
G
Sbjct: 179 LG 180
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 6/176 (3%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSLST-GGW 128
+R V+TGLG V+ +G++ SL EG +GI+ Q F + + + ++K S
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGF 188
I K+ + IYA +A ++A+ D+G+++ ++ R G+++GS G R G
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDS---QVSNFRSGLVVGSGGGSPRNQVAGS 121
Query: 189 EAIKV--SYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNA 242
+A + K + P+ + + + SA LA G +YSIS+ACA+S + I +A
Sbjct: 122 DAXRTPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHA 177
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 64 HKEPKERRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEIKSL 123
+K+ ++ +++TG+G V P G + +++L+G G+ + FD S +P +A +I
Sbjct: 3 YKDDDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDF 62
Query: 124 STGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGL-- 181
I ++ + D AL A AL DA + + D GV+ +A GG
Sbjct: 63 HAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDF 119
Query: 182 ------RVLNDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASS 235
++ ++G +++ V Y+ + FY + + +++ G GPS ++ A
Sbjct: 120 THREFRKLWSEGPKSVSV-YESFAWFYA------VNTGQISIRHGMRGPSSALVAEQAGG 172
Query: 236 NYSILNATSHIIKG 249
++ +A I +G
Sbjct: 173 LDALGHARRTIRRG 186
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSE-FPTRIAAEIKSLSTGGW 128
+R+V+TG+G VT LG +L G + + +D E TR+AA + +
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGG---LRVLN 185
K + + +YA+ A + AL DAG S + R GV GS+ G +R
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGDES--ISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 186 DGFEAIKV------SYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSI 239
E+ + SY +M P T + L DL G S+ACAS + +I
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPH------TTAVNVSLFWDL--KGRIVPTSSACASGSQAI 175
Query: 240 LNATSHIIKG 249
A +I G
Sbjct: 176 GYAYENIAMG 185
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 162 SGELDKSRCGVIIGSAMGGLRVLNDGFEAIKVSY-KKMSPFYIPYSLTNMASAVLAMDLG 220
S E+D R V++G+ +GG + + ++ + +K+SP + + N A+AV+ + LG
Sbjct: 100 SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLG 159
Query: 221 WTGPSYSISTACASSNYSILNATSHIIKGDT 251
+ +AC+S + +I +A I+ GD
Sbjct: 160 ARAGVMTPVSACSSGSEAIAHAWRQIVMGDA 190
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 162 SGELDKSRCGVIIGSAMGGLRVLNDGFEAIKV-SYKKMSPFYIPYSLTNMASAVLAMDLG 220
S E+D R V++G+ +GG + + ++ + +K+SP + + N A+AV+ + LG
Sbjct: 100 SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLG 159
Query: 221 WTGPSYSISTACASSNYSILNATSHIIKGDT 251
+ +A +S + +I +A I+ GD
Sbjct: 160 ARAGVMTPVSAQSSGSEAIAHAWRQIVMGDA 190
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 72 IVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEF--PTRIAAEIKSLSTGGWI 129
+VVTG+ T L DA LL+ +GI + EF P RI + L
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHL--LEEFDHQ 87
Query: 130 SPKIAKKADKYLI-YALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGF 188
+I + YL + V ++ +AG S E+D +R V IG+ +G L +
Sbjct: 88 LTRIELRRMGYLQRMSTVLSRRLWENAG-----SPEVDTNRLMVSIGTGLGSAEELVFSY 142
Query: 189 EAIKV-SYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
+ ++ K +SP + + N A+A + ++ + +ACAS +I A I+
Sbjct: 143 DDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIV 202
Query: 248 KGD 250
G+
Sbjct: 203 LGE 205
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 70 RRIVVTGLGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPT------RIAAEIKSL 123
+V+ G+ P ++ F +L+ GV ++D D + R + ++K L
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTD----DDRRWKAGLYGLPRRSGKLKDL 59
Query: 124 S----TGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMG 179
S + + PK A D L L +A+VD GI L + GV +G +
Sbjct: 60 SRFDASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSG- 115
Query: 180 GLRVLNDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGW----TGPSYSISTACASS 235
++ EA+ + + + YS+ A++A L + GPS ++ TAC+SS
Sbjct: 116 -----SETSEALSRDPETL----VGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSS 166
Query: 236 NYSILNATSHIIKG 249
++ NA I G
Sbjct: 167 LMALQNAYQAIHSG 180
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 111 EFPTRIAAEIKSLSTGGW------ISPKIAKKADKYLIYALVAGKKALVDAGITE--QVS 162
+F +A +I + GW + I ++ D +Y LV+ +AL+ +GIT+ +
Sbjct: 1155 QFDRLVAGQIPT----GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFY 1210
Query: 163 GELDKSRCGVIIGSAMGGLRVLNDGFEAIKVSYKKMSPFYIPYSLTN-MASAVLAMDLGW 221
+ S G IGS +GG L G + K + + S N MA+ V + L
Sbjct: 1211 KYVHLSEVGNCIGSGVGGTSALR-GMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSS 1269
Query: 222 TGPSYSISTACASSNYSILNATSHIIKG 249
TGP + ACA++ S+ I++G
Sbjct: 1270 TGPIKTPVGACATAVESLDVGYDTIMQG 1297
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 33.9 bits (76), Expect = 0.089, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 205 YSLTNMASAV----LAMDLGWTGPSYSISTACASSNYSILNATSHIIKGDT 251
YS+T +A AV ++ +G GPS S+ TAC+SS ++ A + KG++
Sbjct: 146 YSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGES 196
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 72 IVVTGLGAVTPLGDDAHLFHTSLLEGVTGIS-DIQGFDCSEF--PTRIAAEIKSLS---- 124
+V+ G+ P ++ F +L+ GV ++ D + + + P R+ ++K LS
Sbjct: 4 VVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMG-KLKDLSRFDA 62
Query: 125 TGGWISPKIAKKADKYLIYALVAGKKALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVL 184
+ + K A D L L +A+VD GI L + GV +G +
Sbjct: 63 SFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGIN---PASLRGTSTGVWVGVSS------ 113
Query: 185 NDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGW----TGPSYSISTACASSNYSIL 240
+D EA+ + + + YS+ A++A L + GPS +I TAC+SS ++
Sbjct: 114 SDASEALSRDPETL----VGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQ 169
Query: 241 NATSHIIKGD 250
+A I G+
Sbjct: 170 SAYQAIRGGE 179
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural
Genomics Consortium Target Pr6
Length = 240
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 151 ALVDAGITEQVSGELDKSRCGVIIGSAMGGLRVLNDGFEAIKVSYKKMS 199
AL+D G+ E L++ +II ++LN+GFE++K+ K S
Sbjct: 157 ALIDYGLEE-----LEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKAS 200
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 161 VSGELDKSRCGVIIGSAMGGLRVLNDGFEAI 191
V+GEL+K V IG M G+ +D FE++
Sbjct: 530 VAGELNKLADNVAIGRNMAGVHYFSDQFESL 560
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 198 MSPFYIPYSLTNMASAVLAMDLGWT-GPSYSISTACASSNYSILNATSHIIKG 249
+S P++ T A+A++A ++G T P+Y +S ACA Y + A + + G
Sbjct: 89 VSTVTFPHA-TPSAAALVAHEIGATPAPAYDVSAACAGYCYGVAQADALVRSG 140
>pdb|1UP8|A Chain A, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|B Chain B, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|C Chain C, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|D Chain D, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
Length = 598
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 161 VSGELDKSRCGVIIGSAMGGLRVLNDGFEAI 191
V+GEL+K + IG M G+ +D FE++
Sbjct: 532 VAGELNKLADNIAIGRNMAGVHYFSDQFESL 562
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 67 PKERRIVVTG------LGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEI 120
P+ R ++V G +G+ P G+D S + GI I S +A EI
Sbjct: 94 PEGRDVIVIGNDITFRIGSFGP-GEDLLYLRASEMARAEGIPKIYVAANSGARIGMAEEI 152
Query: 121 KSLSTGGWISPKIAKKADKYL 141
K + W+ P+ K KYL
Sbjct: 153 KHMFHVAWVDPEDPHKGFKYL 173
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 67 PKERRIVVTG------LGAVTPLGDDAHLFHTSLLEGVTGISDIQGFDCSEFPTRIAAEI 120
P+ R ++V G +G+ P G+D S + GI I S +A EI
Sbjct: 92 PEGRDVIVIGNDITFRIGSFGP-GEDLLYLRASEMARAEGIPKIYVAANSGARIGMAEEI 150
Query: 121 KSLSTGGWISPKIAKKADKYL 141
K + W+ P+ K KYL
Sbjct: 151 KHMFHVAWVDPEDPHKGFKYL 171
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 129 ISPKIAKKADKYLIYALVAGKKALVDAGIT-EQVSGELDKSRCGVIIGSAMGGLRVLNDG 187
ISP +A D+ ++ +VA A + +G T ++ + S+ G+ MGG+ +
Sbjct: 2636 ISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTM 2695
Query: 188 FEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACASSNYSILNATSHII 247
+ + K + +A+ V+ +G G ACA++ S+ I
Sbjct: 2696 YHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIK 2755
Query: 248 KG 249
G
Sbjct: 2756 LG 2757
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 174 IGSAMGGLRVLNDGFEAIKVSYKKMSPFYIPYSLTNMASAVLAMDLGWTGPSYSISTACA 233
GS G RVLN ++ K + FY + G+ IST
Sbjct: 74 FGSGTTGSRVLNGTYQGHKACEDALKEFY-------GTEHAIVFSTGYQANLGMISTLAG 126
Query: 234 SSNYSILNATSH 245
+Y IL+A SH
Sbjct: 127 KGDYIILDADSH 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,149,277
Number of Sequences: 62578
Number of extensions: 271590
Number of successful extensions: 868
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 92
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)