BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024766
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 14 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 73
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 74 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 133
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 134 DYWGHVNPIG 143
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/130 (71%), Positives = 104/130 (80%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 36 AGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 95
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLN LGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 96 YHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDPEVHPQSE 155
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 156 DYWGHVNPIG 165
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 16/147 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---LEV 181
AGF+GSHLVDKL++ G EV+V+DN +GR++ F NP EL D+ + ++
Sbjct: 9 AGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDYSWGAGIKG 63
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD---- 236
D ++H A P+ NV+ T N+L A++ G + + S+S VYGD
Sbjct: 64 DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVI 123
Query: 237 --PLEHPQKE-TYWGNVNPIGELLAAT 260
P E P K + +G GE++ AT
Sbjct: 124 PTPEEEPYKPISVYGAAKAAGEVMCAT 150
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGF+GSH+VDKL +E++VIDN +G ++ + R + +L D ++ L +++
Sbjct: 10 AGFIGSHVVDKL-SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADD-IKDYLKGAEEV 67
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYGDPLEHPQK 243
+H+A NP + + NV+ T +L ++ G ++ + TSTS VYG+ P
Sbjct: 68 WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTP 127
Query: 244 ETY 246
E Y
Sbjct: 128 EDY 130
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGF+GSHLVDKL++ G EV+V+D + H R+ + D ++ D +
Sbjct: 9 AGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLK------DYSWGAGIKGDVV 62
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD------P 237
+H A P+ NV+ T N+L A++ G + + S+S VYGD P
Sbjct: 63 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP 122
Query: 238 LEHPQKE-TYWGNVNPIGELLAAT 260
E P K + +G GE++ AT
Sbjct: 123 EEEPYKPISVYGAAKAAGEVMCAT 146
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV-------HHFRNPRFELIRHDVVEPI 177
AG++GSH V +LI+ G + +V DN D++ HH +L +E +
Sbjct: 20 AGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKV 79
Query: 178 LLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVY 234
E +D + H A + P++ N++GT+ +L L ++ +KF+ +S++ VY
Sbjct: 80 FKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVY 139
Query: 235 GDPLEHPQ-----KETYWGNVNPIG 254
GD P +E G NP G
Sbjct: 140 GDATRFPNMIPIPEECPLGPTNPYG 164
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++ L+ +V+ +DNF TG + N LV + F+ I+ D+
Sbjct: 36 AGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
VD + H A S +P+ + TN+ G LNML A+ + F ++S
Sbjct: 96 CNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSS 155
Query: 233 VYGDPLEHPQKETYWGNVNPIGELLAATAV 262
YGD P+ E + IG+ L+ AV
Sbjct: 156 TYGDHPGLPKVE------DTIGKPLSPYAV 179
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL------ 178
G +GSH+ + L++RGD+V+ IDNF TGR+++L H P + + + L
Sbjct: 30 CGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PNLTFVEGSIADHALVNQLIG 86
Query: 179 -LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKFLLTSTSEVYG 235
L+ D + H A YN TN +G N++ AK+ VG +F+ T+ YG
Sbjct: 87 DLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYG 142
Query: 236 -DPLEHP 241
P++ P
Sbjct: 143 VKPIQQP 149
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 47 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 106
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 107 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 166
Query: 233 VYGDPLEHPQKETYWGN 249
YGD P+ E GN
Sbjct: 167 TYGDHPALPKVEENIGN 183
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 34 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 153
Query: 233 VYGDPLEHPQKETYWGN 249
YGD P+ E GN
Sbjct: 154 TYGDHPALPKVEENIGN 170
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 28 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 87
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 88 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 147
Query: 233 VYGDPLEHPQKETYWGN 249
YGD P+ E GN
Sbjct: 148 TYGDHPALPKVEENIGN 164
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------LVHHFRNPRFELIRHDV----- 173
AGF+GS+L++KL+ VI +DNF TG + N LV + RF I D+
Sbjct: 34 AGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
E ++ VD + H A S +P+ T TN+ G LN+L AK + F ++S
Sbjct: 94 CEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSS 153
Query: 233 VYGDPLEHPQKETYWGN 249
YGD P+ E GN
Sbjct: 154 TYGDHPALPKVEENIGN 170
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 125 AGFVGSHLVDKLIDR------GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPI 177
AGF+GSH V +L+ DEVIV+D+ + G + NL +PR + D+ +
Sbjct: 9 AGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAG 68
Query: 178 LLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTS 231
LL VD I H A + +TNV GT +L A G + + ST
Sbjct: 69 LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTD 128
Query: 232 EVYG 235
EVYG
Sbjct: 129 EVYG 132
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE--VD 182
AG++GSH V KL+D G V+V+DN TG +D + + +L + + + ++
Sbjct: 10 AGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIE 69
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEH 240
+ H A + P++ NV G L +L + KF+ +ST+ YG+ ++
Sbjct: 70 AVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDL 129
Query: 241 PQKETYWGNVNPIGE 255
+ET N GE
Sbjct: 130 ITEETMTNPTNTYGE 144
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 21/136 (15%)
Query: 129 GSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVH--HFRNPRFELIRHDVVEP-----I 177
GS+L + L+++G EV I +F T R D++ H NP+F L D+ + I
Sbjct: 14 GSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRI 73
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML------GLAKRVGAKFLLTS 229
L EV D++Y+L + +P T + MGTL +L GL K+ +F S
Sbjct: 74 LREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKT--RFYQAS 131
Query: 230 TSEVYGDPLEHPQKET 245
TSE+YG E PQKET
Sbjct: 132 TSELYGLVQEIPQKET 147
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 125 AGFVGSHLVDKLIDR------GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPI 177
AGF+GSH V +L+ DEVIV+D+ + G + NL +PR + D+ +
Sbjct: 9 AGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAG 68
Query: 178 LLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTS 231
LL VD I H A + +TNV GT +L A G + + ST+
Sbjct: 69 LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTN 128
Query: 232 EVYG 235
+VYG
Sbjct: 129 QVYG 132
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELI------RHDVVEPI 177
GF+GS+L + +G ++IV DN G DNL FE + ++DV I
Sbjct: 10 CGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLI 69
Query: 178 LLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVY 234
+ D +HLA + NP + NV GTLN+L ++ + + +ST++VY
Sbjct: 70 TKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVY 129
Query: 235 GDPLEHPQKET 245
GD ++ ET
Sbjct: 130 GDLEQYKYNET 140
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEV--D 182
AGF+GSH+V+ L+ RG EV V+DN TG+++N+ R +L + VE E
Sbjct: 9 AGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPT 68
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL--TSTSEVYGDPLEH 240
+ H A AS +PV + N++G LN+L ++ G + L+ ++ +YG+ E
Sbjct: 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEG 128
Query: 241 PQKETYW 247
+ E W
Sbjct: 129 ERAEETW 135
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEV--IVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILLE- 180
AGF+GS+ V + + +V V+D + G K NL R EL+ D+ + L++
Sbjct: 13 AGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAILGDRVELVVGDIADAELVDK 71
Query: 181 ----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
D I H A + + +P I TN +GT +L A++ +F ST EVYGD
Sbjct: 72 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD 131
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 126 GFVGSHLVDKLIDR--GDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDV-----VEPI 177
GF+GS+ + ++++ EVI ID G NL +PR+ ++ DV V+ +
Sbjct: 13 GFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKEL 72
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYG 235
+ +VD + HLA + +P + +NV+GT +L +R +F+ ST EVYG
Sbjct: 73 VRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG 132
Query: 236 DPLE 239
D L+
Sbjct: 133 DILK 136
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +ST+ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSTATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 126 GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFE---LIRHDVVEPILLEVD 182
GF+G HL ++++ D + + T R +LV H R FE I + VE + + D
Sbjct: 34 GFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCD 93
Query: 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
I L A+P Y P++ + + L ++ A + G + STSEVYG
Sbjct: 94 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 146
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDQPKIPYVESF 140
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDQPKIPYVESF 140
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE--VD 182
AG +GS+L++ + +G E++VIDNF TG+++ L +I V + LLE D
Sbjct: 29 AGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV---AGLSVIEGSVTDAGLLERAFD 85
Query: 183 QI--YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT-STSEVYGDPLE 239
H+ A+ + + TNV G++N+ A + G K LL T+ YG P
Sbjct: 86 SFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPAT 145
Query: 240 HP 241
P
Sbjct: 146 VP 147
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S++ VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDQPKIPYVESF 140
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDQPKIPYVESF 140
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSAATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPILL--- 179
+G++GSH +L+ G +VI++DN ++ L + + D+ L+
Sbjct: 9 SGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
+D + H A + P++ NV GTL ++ + K F+ +S + VY
Sbjct: 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSVATVY 128
Query: 235 GDPLEHPQKETY 246
GD + P E++
Sbjct: 129 GDNPKIPYVESF 140
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 125 AGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS LV +I+ D V+V+D + G +L ++ RF + D+ + L
Sbjct: 10 AGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARV 69
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA----------KRVGAKF 225
+ D + HLA + P I+TN++GT +L A K+ +F
Sbjct: 70 FTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRF 129
Query: 226 LLTSTSEVYGD 236
ST EVYGD
Sbjct: 130 HHISTDEVYGD 140
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILL 179
AGFVG +L + L ++ EV F T R + + P E+I D+ V+ ++
Sbjct: 21 AGFVGKYLANHLTEQNVEV-----FGTSRN----NEAKLPNVEMISLDIMDSQRVKKVIS 71
Query: 180 EV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYG 235
++ D I+HLA +S N T TNV GTL++L + + + L +SE YG
Sbjct: 72 DIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYG 131
Query: 236 D--PLEHPQKE 244
P E P E
Sbjct: 132 MILPEESPVSE 142
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS +V +I + D V+ ID + G ++L + R+ D+ + +
Sbjct: 9 AGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRI 68
Query: 180 ----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----------KF 225
+ D + HLA + P I+TN++GT +L +A++ + +F
Sbjct: 69 FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRF 128
Query: 226 LLTSTSEVYGDPLEHPQK 243
ST EVYGD L HP +
Sbjct: 129 HHISTDEVYGD-LPHPDE 145
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTG---RKDNLVHHFRNPRFELIRHDVVEPILLEV 181
AGF+G HL L+ G+EV V+D+ + P EL D L +V
Sbjct: 16 AGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD-----LSDV 70
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG--DPL 238
+YHLA S P+ + NV ++L L VG K ++ ST EVYG D L
Sbjct: 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTL 129
Query: 239 EHPQ 242
P+
Sbjct: 130 PTPE 133
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNF---FTGRKD-----NLVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF F G V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGE 255
S++ VYG+P P E + G NP G+
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGK 159
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNF---FTGRKD-----NLVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF F G V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGE 255
S++ VYG+P P E + G NP G+
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGK 159
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNF---FTGRKD-----NLVHHFRNPRFELIRHDVVEP 176
AG++GSH V +L++ G +VIDNF F G V E D+++
Sbjct: 11 AGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ + H A + P+ + N+ GT+ +L + K G K L+ +
Sbjct: 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS 130
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIGE 255
S++ VYG+P P E + G NP G+
Sbjct: 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGK 159
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 135
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 135
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 135
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 135
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 10 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 64
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 65 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 122
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 325 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 379
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + STSEVYG
Sbjct: 380 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 125 AGFVGSHLVDKLIDR--GDEVIVIDNF-----FTGRKDNLVHHFRNP---RFELIRHDVV 174
AGFVGS+L + +V+V+D F F+ + + + HF+N + E+I D+
Sbjct: 19 AGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN 78
Query: 175 EPI------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
P+ L D ++H A + N +KTN LN+L +A+ AK +
Sbjct: 79 NPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKKAKVIYA 136
Query: 229 STSEVYGD 236
S++ VYG+
Sbjct: 137 SSAGVYGN 144
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 26/139 (18%)
Query: 129 GSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVHHFRNPRF-----------ELIRHDV 173
GS+L + L+++G EV I +F TGR + H ++NP+ +L
Sbjct: 37 GSYLAEFLLEKGYEVHGIVRRSSSFNTGR---IEHLYKNPQAHIEGNMKLHYGDLTDSTC 93
Query: 174 VEPILLEVD--QIYHLACPASPVHYKYNPVK-TIKTNVMGTLNMLGLAKRVG----AKFL 226
+ I+ EV +IY+L S V ++ + T + +GTL +L K G KF
Sbjct: 94 LVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFY 152
Query: 227 LTSTSEVYGDPLEHPQKET 245
STSE+YG E PQKET
Sbjct: 153 QASTSELYGKVQEIPQKET 171
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 126 GFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPI 177
GF+G+HL ++L+ R D EV +D G D + +P F + D+ +E
Sbjct: 23 GFIGNHLTERLL-REDHYEVYGLD---IG-SDAISRFLNHPHFHFVEGDISIHSEWIEYH 77
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ + D + L A+P+ Y NP++ + + L ++ + + + ST+EVYG
Sbjct: 78 VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTAEVYG 135
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---- 179
AGFVGS+LV +L++ G ++V V+DN + K N+ H P + + LL
Sbjct: 41 AGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH---PAVRFSETSITDDALLASLQ 97
Query: 180 -EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
E D ++HLA ++P+ + N + TL +
Sbjct: 98 DEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKL 133
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNF----FTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
AGF+GS+ V + + E I NF ++G +N+ +P + ++ ++ LLE
Sbjct: 33 AGFIGSNFVHYXL-QSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLE 91
Query: 181 -------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSE 232
V I + A + NP+ TNV+GT+ +L L K+ K + ST E
Sbjct: 92 HVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDE 151
Query: 233 VYG 235
VYG
Sbjct: 152 VYG 154
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 166 FELIRHDVVEPILLEVDQIYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A 223
FE +R + E + + ++H+A P + Y+ P+KT TNVMGT+++L K+VG
Sbjct: 69 FEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGNI 124
Query: 224 KFLLTSTSEVYGDPLEHPQKETYWG 248
K ++ TS+ D +E WG
Sbjct: 125 KAVVNITSDKCYD-----NREWVWG 144
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 126 GFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILL 179
G G V K++D + + I++ + ++ + F +PR DV + L
Sbjct: 31 GSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE 90
Query: 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
VD H A +YNP++ IKTN+MG N++ + ++ +++ +P+
Sbjct: 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAANPI 149
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--GAKFLLTSTSEVYGDPLE 239
D++Y+LA + P+ T + + +G L +L + V KF STSE++G E
Sbjct: 77 DEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQE 136
Query: 240 HPQKE 244
PQ E
Sbjct: 137 IPQTE 141
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 149
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 149
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 149
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL---EV 181
GF+ SH+ +L G VI D + +++ F L+ V+E L V
Sbjct: 38 GGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 94
Query: 182 DQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
D +++LA + + + N + N M + NM+ A+ G K F S++ +Y
Sbjct: 95 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIY 149
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS++V L D+G +++V+DN G K NLV N + + D + I+
Sbjct: 55 AGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQIMAGEE 112
Query: 180 --EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+V+ I+H +S +++ + N + +L FL S++ YG
Sbjct: 113 FGDVEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 168
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPILL--- 179
AGF+GS++V L D+G +++V+DN G K NLV N + + D + I+
Sbjct: 8 AGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQIMAGEE 65
Query: 180 --EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+V+ I+H +S +++ + N + +L FL S++ YG
Sbjct: 66 FGDVEAIFHEGAXSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 121
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 184 IYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHP 241
++H+A P + Y PV+T TNVMGT+ +L + VG K ++ TS+ D
Sbjct: 84 VFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD----- 137
Query: 242 QKETYWG 248
KE WG
Sbjct: 138 NKEWIWG 144
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRFELIRHDVVEPILLE 180
AG++GSH +L+ G +V++ DN +++ + + P F DV + L
Sbjct: 14 AGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFH--ETDVSDERALA 71
Query: 181 -------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK-RVGAKFLLTSTSE 232
+ H A + P++ + N+ L++L + + R + + +S++
Sbjct: 72 RIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSAT 131
Query: 233 VYGDPLEHPQKETY-WGNVNPIGE 255
VYG P P ET+ NP G+
Sbjct: 132 VYGVPERSPIDETFPLSATNPYGQ 155
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP------ 176
AG++GSH V L+ D V+++D+ T K + V N +L + D +P
Sbjct: 11 AGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRY 70
Query: 177 ILLEV-------------------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML-G 216
LEV D + H+ + +P+K NV+G L +L
Sbjct: 71 AALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQA 130
Query: 217 LAKRVGAKFLLTSTSEVYGDP 237
+ K + +S++ ++G+P
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNP 151
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYG 235
+D I+HLA S K +P K N+ GT N+L AK RV K ++ ST V+G
Sbjct: 63 IDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVFG 117
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAKFLLTSTSEVYG 235
+D I+HLA S K +P K N+ GT N+L AK RV K ++ ST V+G
Sbjct: 63 IDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVFG 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,279,680
Number of Sequences: 62578
Number of extensions: 276144
Number of successful extensions: 623
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 65
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)