BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024766
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 84 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 143
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 144 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 203
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 204 YGDPEVHPQNEDYWGHVNPIG 224
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 87 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 146
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 147 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 206
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 207 YGDPEVHPQSEEYWGHVNPIG 227
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 213 bits (543), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 13/136 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSH+VDKLI+ +VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS- 231
E V+ + H A + + NPV NV+GT+N+L + ++ ++ ++S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 232 -EVYGDPLEHPQKETY 246
VYG+P P E +
Sbjct: 117 GAVYGEPNYLPVDENH 132
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +DNF TGR NL H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 ILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G + ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLEHPQKET 245
S +YG P E+P ET
Sbjct: 121 SGGSIYGTPPEYPTPET 137
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +D+ +GR +NL + +FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 IL------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL--T 228
L + + I+HLA S +P NV+GT+ + A+ G + ++ +
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 229 STSEVYGDPLEHPQKETYWGNVNP 252
S VYG P +P E VNP
Sbjct: 121 SGGSVYGTPPAYPTSEDM--PVNP 142
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ I+V GGAG++GSH+VD+L+++G E V+V+D+ TG + + + +L D +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHPDAIFYQGDLSDQDFMR 60
Query: 176 PILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G K+++ +ST+
Sbjct: 61 KVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTA 120
Query: 232 EVYGDPLEHPQKETYWGN-VNPIGE 255
YG P E P ET N +NP GE
Sbjct: 121 ATYGIPEEIPILETTPQNPINPYGE 145
>sp|O84903|GALE_LACCA UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1
Length = 331
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+ I V GGAG++GSH V +L+ G++V+V+DN TG + + +PR + D+ +
Sbjct: 1 MTIAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLITGHRKAV-----DPRARFYQGDIRDY 55
Query: 177 ILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
L ++D I H A + +P+K N G + +L + G K + +
Sbjct: 56 HFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFS 115
Query: 229 STSEVYGDPLEHPQKET 245
ST+ YG+P + P KET
Sbjct: 116 STAATYGEPKQVPIKET 132
>sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2
Length = 338
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVV 174
+ I+VTGGAG++GSH V +L++ G EV+V+DN +L V + D++
Sbjct: 1 MAILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAKFYEGDIL 60
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFL 226
+ LL E++ + H A + P + NV GTL ++ K+ G F+
Sbjct: 61 DRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFV 120
Query: 227 LTSTSEVYGDPLEHPQKETY--WGNVNPIG 254
+S++ VYGDP P E G NP G
Sbjct: 121 FSSSATVYGDPKIIPITEDCEVGGTTNPYG 150
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++++V GGAG++GSH V +L+ G++V+V+D +TG + + +P+ + + D+ +
Sbjct: 1 MKVLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDT 55
Query: 177 ILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-T 228
L+ ++D + H A + P+K NV G +++L K+L+ +
Sbjct: 56 FLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFS 115
Query: 229 STSEVYGDPLEHP-QKETYWGNVNPIGE 255
S++ YG P + P ++T +NP GE
Sbjct: 116 SSAATYGIPKKLPITEDTPLNPINPYGE 143
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV-------HHFRNPRFELIRH 171
++VTGGAG++GSH V +LI+ G + +V DN D++ HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 172 DVVEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+E + E +D + H A + P++ N++GT+ +L L ++ +KF+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 229 STSEVYGDPLEHPQ-----KETYWGNVNPIG 254
S++ VYGD P +E G NP G
Sbjct: 134 SSATVYGDATRFPNMIPIPEECPLGPTNPYG 164
>sp|Q8Z540|ARNA_SALTI Bifunctional polymyxin resistance protein ArnA OS=Salmonella typhi
GN=arnA PE=3 SV=1
Length = 660
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B5BCP6|ARNA_SALPK Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1
Length = 660
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|Q5PNA6|ARNA_SALPA Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=arnA PE=3
SV=1
Length = 660
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA R P G+RR+R+++ G GF+G+HL ++L+D + EV +D L+H
Sbjct: 301 GACLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLDEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|Q59083|EXOB_AZOBR UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3
SV=1
Length = 348
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R++VTGGAG++GSH++ L D G + ID+ GR++ + L+ D+
Sbjct: 10 RVLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAI-----PAAVPLVEGDIGSAE 64
Query: 178 LLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTS 229
LL+ VD + H A P+ + N +L +LG R G K + +S
Sbjct: 65 LLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVFSS 124
Query: 230 TSEVYGDPLEHPQKE 244
T+ VYG P P +E
Sbjct: 125 TAAVYGAPESVPIRE 139
>sp|P96995|GALE_STRMU UDP-glucose 4-epimerase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=galE PE=3 SV=2
Length = 333
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ I+V GGAG++GSH+VD+LI++G +EV+V+D+ TG + + + + +L + +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAVHPAAKFYQGDLADREFMS 60
Query: 176 PILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G K+++ +ST+
Sbjct: 61 MVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTA 120
Query: 232 EVYGDPLEHPQKETYWGN-VNPIGE 255
YG P E P KET +NP GE
Sbjct: 121 ATYGIPDEIPIKETTPQRPINPYGE 145
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B4TPI2|ARNA_SALSV Bifunctional polymyxin resistance protein ArnA OS=Salmonella
schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B5R272|ARNA_SALEP Bifunctional polymyxin resistance protein ArnA OS=Salmonella
enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ R P G+RR+R+++ G GF+G+HL ++L++ + EV +D L+H
Sbjct: 301 GARLNRPPATSGKRRIRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLH- 359
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 360 ---PRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRYCVKYRKRVVFPSTSEVYG 437
>sp|Q9CNY5|GALE_PASMU UDP-glucose 4-epimerase OS=Pasteurella multocida (strain Pm70)
GN=galE PE=3 SV=1
Length = 338
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVV 174
+ I+VTGGAG++GSH V +L++ +V+V+DN +L V + + + D++
Sbjct: 1 MAILVTGGAGYIGSHTVVELLNANKDVVVLDNLCNSSPKSLERVAQITGKQVKFYQGDIL 60
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFL 226
+ LL ++ + H A + P + NV G+L ++ K+ G F+
Sbjct: 61 DTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVWNFV 120
Query: 227 LTSTSEVYGDPLEHPQKETY--WGNVNPIG 254
+S++ VYGDP P E+ G NP G
Sbjct: 121 FSSSATVYGDPEIIPITESCKVGGTTNPYG 150
>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3
SV=1
Length = 672
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 103 AKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHF 161
AK G + + RRR R+++ G GF+G+HL ++L+ D E+ +D D +
Sbjct: 308 AKLGNLASRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFL 363
Query: 162 RNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML 215
+PRF + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 364 GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 423
Query: 216 GLAKRVGAKFLLTSTSEVYG 235
R + + STSEVYG
Sbjct: 424 RDCVRYNKRIVFPSTSEVYG 443
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVH---HFRNPRFELIR 170
+R++VTGGAGF+G++ V + D V V+D + GR+++L R + ++
Sbjct: 1 MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLADVEDAIRLVQGDITD 60
Query: 171 HDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
++V ++ E D + H A + + NP + TNV+GT +L +R G + ST
Sbjct: 61 AELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHIST 120
Query: 231 SEVYGD 236
EVYGD
Sbjct: 121 DEVYGD 126
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD--------EVIVIDNF-FTGRKDNLVHHFRNPRFE 167
++I+VTGGAGF+GSH V LI GD +V V+D + G NL +PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDVVEPILLEV-----DQIYHLACPASPVHYKYNPVKT---IKTNVMGTLNMLGLAK 219
+R D+ + L+E D + H A+ H + V + + +N++GT +L A
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHF---AAETHVDRSVVASGPFVASNLVGTQVLLDAAL 116
Query: 220 R--VGAKFLLTSTSEVYG 235
R +G +FL ST EVYG
Sbjct: 117 RHHIG-RFLHVSTDEVYG 133
>sp|P35673|GALE_ERWAM UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1
Length = 337
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHFRNPRFELIRHDVV 174
+ I+VTGGAG++GSH V L+ RGD+V+++DN ++ N V D++
Sbjct: 1 MSILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEKLTGKTATFFEGDLL 60
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFL 226
+ L + + H A + P++ + NV GTL +L + G +F+
Sbjct: 61 DRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVNQFI 120
Query: 227 LTSTSEVYGDPLEHPQKETYWGNVNPIG 254
+S++ VYG P ET PIG
Sbjct: 121 FSSSATVYGADAPVPYVET-----TPIG 143
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELI------ 169
+++++TGG GF+GS+L + +G ++IV DN G DNL FE +
Sbjct: 1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 170 RHDVVEPILLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++DV I + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 227 LTSTSEVYGDPLEHPQKET 245
+ST++VYGD ++ ET
Sbjct: 121 YSSTNKVYGDLEQYKYNET 139
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 103 AKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHF 161
A+ G + + RRR R+++ G GF+G+HL ++L+ D E+ +D D +
Sbjct: 309 ARLGNLASRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFL 364
Query: 162 RNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML 215
+PRF + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 365 GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 424
Query: 216 GLAKRVGAKFLLTSTSEVYG 235
R + + STSEVYG
Sbjct: 425 RDCVRYNKRIVFPSTSEVYG 444
>sp|Q04973|VIPB_SALTI Vi polysaccharide biosynthesis protein VipB/TviC OS=Salmonella
typhi GN=vipB PE=3 SV=1
Length = 348
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
R ++TG AGF+GS L+++L+ VI +DNF TG + NL V + RF I+
Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQG 76
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKF 225
D+ + VD + H A S +P+ T N+ G LNML A+ + F
Sbjct: 77 DIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSF 136
Query: 226 LLTSTSEVYGDPLEHPQKE 244
++S YGD + P+ E
Sbjct: 137 TYAASSSTYGDHPDLPKIE 155
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGD--EVIV--IDNF-FTGRKDNLVHHFRNPRFELIRHDV 173
++VTG AGF+GS V L+ G +V+V +D + G DNL +PR+ R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLEH 240
ST EVYG LEH
Sbjct: 125 STDEVYGS-LEH 135
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 15/141 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNF-------FTGRKDNLVHHFRNPRFELI 169
I+VTG AGF+G HL L+D ++ VI IDN +++ ++ ++ N F +
Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKL 65
Query: 170 R----HDVVEPIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A 223
D+VE + E+D I HL A + NP IK+N MGTLN+ A+R
Sbjct: 66 DFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE 125
Query: 224 KFLLTSTSEVYGDPLEHPQKE 244
K + S+S VYG + P E
Sbjct: 126 KVVYASSSSVYGGNRKIPFSE 146
>sp|P45602|GALE_KLEPN UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE
PE=3 SV=1
Length = 139
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDV- 173
++++VTGG+G++GSH +L+ RG EV+++DN ++ L + I D+
Sbjct: 1 MKVLVTGGSGYIGSHTCVQLLQRGHEVVILDNLCNSKRRILPVIERLGGKEATFIEGDIR 60
Query: 174 ----VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FL 226
+ IL + ++ + H A + P++ NV GTL ++ + G K F+
Sbjct: 61 NEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAGVKNFI 120
Query: 227 LTSTSEVYGDPLEHPQKET 245
+S++ VYGD + P E+
Sbjct: 121 FSSSATVYGDQPKIPYVES 139
>sp|Q57301|GALE_YEREN UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3
SV=1
Length = 336
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRF---ELI 169
+ I++TGGAG++GSH V L+++G V+V+DN ++L R P F +++
Sbjct: 1 MSILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPNFYHGDIL 60
Query: 170 RHDVVEPILL--EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML-GLAKRVGAKFL 226
++ I ++D + H A S P++ + NV+G++ +L + K +
Sbjct: 61 DRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKKLI 120
Query: 227 LTSTSEVYGDPLEHP--QKETYWGNVNPIG 254
+S++ VYG+P P +K G NP G
Sbjct: 121 FSSSATVYGEPEFVPLTEKARIGGTTNPYG 150
>sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1
SV=1
Length = 460
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE- 175
L ++VTG AGFVGSH L RGD V+ DNF + + +P + R +++E
Sbjct: 112 LSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNF---------NDYYDPSLKRARQELLEK 162
Query: 176 -------------PILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLG 216
P+L ++ I HLA A + NP I +N+ G +N+L
Sbjct: 163 QQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLE 222
Query: 217 LAKRVGAK--FLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAAT 260
+AK + + S+S VYG E+P E + + L AAT
Sbjct: 223 VAKAANPQPAIVWASSSSVYGLNTENPFSEEH--RTDQPASLYAAT 266
>sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3
SV=1
Length = 334
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+ I+VTGGAG++GSH V L+++G++VIV+DN G L D+ +
Sbjct: 1 MAILVTGGAGYIGSHTVLFLLEQGEQVIVLDNLQKGHAGAL------SDVTFYHGDIRDD 54
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML-GLAKRVGAKFLLT 228
LL+ +D + H A + P++ + NV+GT +L + + K + +
Sbjct: 55 QLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIVFS 114
Query: 229 STSEVYGDPLEHPQKET 245
ST+ YG+P++ P +E+
Sbjct: 115 STAATYGEPVQIPIQES 131
>sp|Q3KCC1|ARNA_PSEPF Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1
Length = 668
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 16/141 (11%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHH 160
GA++GR P RR R+++ G GF+G+HL ++L+ D EV +D + D L H
Sbjct: 309 GAESGRGP-----RRTRVLILGVNGFIGNHLSERLLRDERYEVYGLD-IGSDAIDRLRSH 362
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 363 ---PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKL 419
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 420 VRYCVKYNKRVIFPSTSEVYG 440
>sp|B5XTK9|ARNA_KLEP3 Bifunctional polymyxin resistance protein ArnA OS=Klebsiella
pneumoniae (strain 342) GN=arnA PE=3 SV=1
Length = 661
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHH 160
GA PV +RR R+++ G GF+G+HL ++L+ D E+ +D G D +
Sbjct: 301 GAVISSKPVVAIKRRTRVLILGVNGFIGNHLTERLLQDDNYEIYGLD---IG-SDAISRF 356
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
+PRF + D+ +E + + D + L A+P+ Y NP++ + + L +
Sbjct: 357 LESPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 IRDCVKYNKRIIFPSTSEVYG 437
>sp|A8FRR2|ARNA_SHESH Bifunctional polymyxin resistance protein ArnA OS=Shewanella
sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1
Length = 660
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
RR ++++ G GF+G+HL +L+D G E+ +D + H +P F + D+
Sbjct: 316 RRQKVLIMGANGFIGNHLTKRLLDDGKYEIYAMDM----SSSQIEQHLSHPDFHFVEGDI 371
Query: 174 ------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
+E + + D + L A+P+ Y NP++ + + L ++ + + +
Sbjct: 372 TIHNEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIF 431
Query: 228 TSTSEVYG 235
STSEVYG
Sbjct: 432 PSTSEVYG 439
>sp|A8GDR7|ARNA_SERP5 Bifunctional polymyxin resistance protein ArnA OS=Serratia
proteamaculans (strain 568) GN=arnA PE=3 SV=1
Length = 660
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLI--DRGDEVIVIDNFFTGRKDNLVHHFRNPRF 166
P + +RR R+++ G GF+G+HL ++L+ DR D I G D + NPRF
Sbjct: 308 PNAVMKRRTRVLILGVNGFIGNHLTERLLRDDRYD----IYGLDIG-SDAISRFLGNPRF 362
Query: 167 ELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
+ D+ +E + + D I L A+P+ Y NP++ + + L ++ +
Sbjct: 363 HFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVK 422
Query: 221 VGAKFLLTSTSEVYG 235
+ + STSEVYG
Sbjct: 423 YNKRIIFPSTSEVYG 437
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVV 174
+R++VTGG+G++GSH +L+ G +VI++DN ++ L + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FL 226
L+ +D + H A + P++ NV GTL ++ + K F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLEHPQKETY 246
+S++ VYGD + P E++
Sbjct: 121 FSSSATVYGDQPKIPYVESF 140
>sp|A1JPN5|ARNA_YERE8 Bifunctional polymyxin resistance protein ArnA OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=arnA PE=3 SV=1
Length = 687
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHH 160
G + G P +RR R+++ G GF+G+HL ++L+ D EV +D G D +
Sbjct: 301 GIRLGNKPSQKLKRRTRVLILGVNGFIGNHLTERLLRDNRYEVYGLD---IG-SDAICRF 356
Query: 161 FRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNM 214
NP F + D+ +E + + D I L A+P+ Y NP++ + + L +
Sbjct: 357 LDNPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKI 416
Query: 215 LGLAKRVGAKFLLTSTSEVYG 235
+ + + + STSEVYG
Sbjct: 417 VRDCVKYNKRIVFPSTSEVYG 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,640,673
Number of Sequences: 539616
Number of extensions: 4507483
Number of successful extensions: 11017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 10463
Number of HSP's gapped (non-prelim): 478
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)