Query 024767
Match_columns 263
No_of_seqs 167 out of 1074
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 6.5E-58 1.4E-62 461.6 23.7 239 3-256 516-782 (805)
2 COG3217 Uncharacterized Fe-S p 100.0 6.4E-54 1.4E-58 370.7 18.7 233 5-257 2-246 (270)
3 KOG2362 Uncharacterized Fe-S p 100.0 2.9E-48 6.4E-53 339.5 12.4 244 2-258 40-315 (336)
4 PF03476 MOSC_N: MOSC N-termin 100.0 2.4E-35 5.3E-40 233.1 7.6 119 4-132 1-120 (120)
5 PF03473 MOSC: MOSC domain; I 99.7 5.4E-18 1.2E-22 135.9 4.7 76 155-233 11-97 (133)
6 KOG2142 Molybdenum cofactor su 99.0 1.3E-10 2.8E-15 111.9 1.9 108 6-132 465-576 (728)
7 PRK14499 molybdenum cofactor b 96.8 0.0032 7E-08 57.4 6.5 58 163-224 203-268 (308)
8 COG2258 Uncharacterized protei 86.5 1.9 4.2E-05 37.2 5.9 64 164-230 56-125 (210)
9 PRK11536 6-N-hydroxylaminopuri 75.8 16 0.00035 31.9 7.9 68 163-233 55-131 (223)
10 PF05962 HutD: HutD; InterPro 46.8 71 0.0015 26.8 6.4 52 3-54 14-73 (184)
11 PF15114 UPF0640: Uncharacteri 45.8 4.6 9.9E-05 28.3 -0.9 18 245-262 14-31 (69)
12 PF02757 YLP: YLP motif; Inte 41.8 13 0.00028 15.9 0.5 7 255-261 2-8 (9)
13 PRK14499 molybdenum cofactor b 40.6 35 0.00075 31.3 3.7 36 2-37 160-196 (308)
14 COG4416 Com Mu-like prophage p 31.5 28 0.0006 23.4 1.2 14 214-227 22-35 (60)
15 KOG2362 Uncharacterized Fe-S p 26.1 51 0.0011 30.2 2.3 26 37-62 87-112 (336)
16 KOG3347 Predicted nucleotide k 26.1 36 0.00078 28.2 1.2 12 186-197 3-14 (176)
17 COG4110 Uncharacterized protei 25.5 1.6E+02 0.0036 24.5 4.9 40 58-100 114-153 (200)
18 PF10122 Mu-like_Com: Mu-like 23.0 47 0.001 22.0 1.1 19 213-231 21-39 (51)
19 PHA02881 hypothetical protein; 21.7 1.1E+02 0.0024 24.2 3.0 41 183-227 17-69 (161)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=6.5e-58 Score=461.62 Aligned_cols=239 Identities=32% Similarity=0.534 Sum_probs=211.6
Q ss_pred CceEEeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEE
Q 024767 3 AAGKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMV 82 (263)
Q Consensus 3 ~~~~V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~ 82 (263)
..++|++|||||||||+|++|++|++++.||.|||+|||+|++|+|+|||++|+|++|++.++.+ ++.|+
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l~ 585 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKLV 585 (805)
T ss_pred CCCEEEEEEEeccccCCCceeeEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999642 57899
Q ss_pred EEeCCCc-eeEEcCCCCC--CCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCCCCCCCC-----cCCC--
Q 024767 83 IRAPGMQ-ALKIPMSKPC--DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVD-----PEYA-- 152 (263)
Q Consensus 83 l~~pg~~-~l~v~l~~~~--~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~~~r~~~-----~~~~-- 152 (263)
+++|+++ ++.|++++.. ....++++|++.+.+++||+++++|||++||++|+|++.++... |... +.+.
T Consensus 586 l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~~ 664 (805)
T PLN02724 586 VRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCGD 664 (805)
T ss_pred EEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-ccccccccccccccC
Confidence 9999987 6999998653 23567899999999999999999999999999999999976543 4332 1111
Q ss_pred CCCeeeeccCCceeeeeHHHHHHHHHHcCC-------CCCCCcccccEEEec------CccceeeEecceeeeEEEecCC
Q 024767 153 AGQITMFSDGYPFMLLSQGSLDALNKLLKE-------PVPINRFRPKYNSKI------RIMQYLSIIGQHTNFFYKIASS 219 (263)
Q Consensus 153 ~~~~~~f~D~~pi~lis~aSl~~L~~~l~~-------~v~~~RFRpNIvv~g------d~w~~l~iIG~~~~~l~v~~~c 219 (263)
.+.+++|+|.+||||+|++||++||+++++ +++++||||||||+| |.|++|+ ||++ .|++++||
T Consensus 665 ~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~-IG~~--~~~~~~~C 741 (805)
T PLN02724 665 DESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLS-IGDA--EFTVLGGC 741 (805)
T ss_pred cCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEE-ECCE--EEEEeccc
Confidence 234589999999999999999999999973 699999999999998 6899999 8987 89999999
Q ss_pred Ccccceee--ccCCC--C-hhhHHHHhCCCCCCCceeEEecc
Q 024767 220 LHCSLLEL--CFGLV--E-EPILIIASYPDSFCLDIFYGISS 256 (263)
Q Consensus 220 ~RC~~~~v--~tg~~--~-~~l~~L~~~R~~~~g~~~fG~~~ 256 (263)
.||.|||+ +||++ + |||+||++||+.. |++.||++.
T Consensus 742 ~RC~~~tvDp~tg~~~~~~epl~tL~~~R~~~-~~~~FG~~~ 782 (805)
T PLN02724 742 NRCQMINIDQETGLVNPSNEPLATLASYRRVK-GKILFGILL 782 (805)
T ss_pred CCCCCCcCCcccCccCCCCChHHHHHHHhCcC-CCCCcccee
Confidence 99999999 48974 3 9999999999998 999999974
No 2
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=6.4e-54 Score=370.69 Aligned_cols=233 Identities=23% Similarity=0.429 Sum_probs=208.9
Q ss_pred eEEeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEEEE
Q 024767 5 GKVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIR 84 (263)
Q Consensus 5 ~~V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~l~ 84 (263)
.+|++||||||||++|+.++++.+...||.+||+|||+|++|+|+|+|++|+|.++++.+. ...+.++
T Consensus 2 ~~ls~L~iyPvKSl~g~~l~~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~~------------~~~~~l~ 69 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERLSRALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAYE------------HDGLRLT 69 (270)
T ss_pred ccchheeeeccccccchhhhhheeeccCCccceEEEEEcCCCceeccccccceeEeeeecc------------ccceEEe
Confidence 3599999999999999999999999999999999999999999999999999999999653 3678899
Q ss_pred eCCCceeEEcCCCCCCCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCCCCCCCCcCCCCCCeeeeccCCc
Q 024767 85 APGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDPEYAAGQITMFSDGYP 164 (263)
Q Consensus 85 ~pg~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~~~r~~~~~~~~~~~~~f~D~~p 164 (263)
+++++.+.+...+ .+..+++||++...+...++++++|||.|||++++|++.+.+. .|.++.. +....+|+|++|
T Consensus 70 ~~~~~~~~v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~v~L~~~~~~~-~r~v~~~--p~~~~~fadg~p 144 (270)
T COG3217 70 APDGEELYVRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRAVSLRWDGAGF-ARRVKAG--PAVPVTFADGYP 144 (270)
T ss_pred cCCCccceeeccc--cccccceeeccccccccchhHHHHHHHhhhceeeEEEecCccc-cccccCC--CceeeEecCCce
Confidence 9999998888765 4567899999999999999999999999999999999987643 2434322 446789999999
Q ss_pred eeeeeHHHHHHHHHHcCCCCCCCcccccEEEec------CccceeeEecceeeeEEEecCCCcccceee--ccCCC---C
Q 024767 165 FMLLSQGSLDALNKLLKEPVPINRFRPKYNSKI------RIMQYLSIIGQHTNFFYKIASSLHCSLLEL--CFGLV---E 233 (263)
Q Consensus 165 i~lis~aSl~~L~~~l~~~v~~~RFRpNIvv~g------d~w~~l~iIG~~~~~l~v~~~c~RC~~~~v--~tg~~---~ 233 (263)
+|++|++||++|+++.+.+++|+|||||||++| |.|+.|+ ||++ .|.+++||.||.+|++ ++|++ .
T Consensus 145 ~l~~~~aSl~dL~~r~~~~~~merFRpNlvv~ge~a~aEd~w~~i~-IG~v--~F~~vkPC~RCi~Ttvd~~tGe~~p~~ 221 (270)
T COG3217 145 ILLFNTASLADLRRRVPANLEMERFRPNLVVEGEDAFAEDSWKSIR-IGGV--RFDVVKPCSRCIFTTVDPDTGERRPGG 221 (270)
T ss_pred EEEEccccHHHHhhhccCCCChhhCCCceEEeecccccccCceEEE-EccE--EEEEeccchhcceeeECCcccccCCCC
Confidence 999999999999999999999999999999999 5678899 8998 8999999999999999 48985 3
Q ss_pred hhhHHHHhCCCCC-CCceeEEeccc
Q 024767 234 EPILIIASYPDSF-CLDIFYGISSF 257 (263)
Q Consensus 234 ~~l~~L~~~R~~~-~g~~~fG~~~~ 257 (263)
+|+++|.++|.+. .|+.+||+|..
T Consensus 222 ~p~~~~~~~R~~~d~~~~~FG~n~~ 246 (270)
T COG3217 222 EPLFTLNRFRTNPDAGGVLFGQNLI 246 (270)
T ss_pred ChhHHHHhhhcccccCcccccceEE
Confidence 9999999999886 78999999864
No 3
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.9e-48 Score=339.47 Aligned_cols=244 Identities=35% Similarity=0.537 Sum_probs=198.9
Q ss_pred CCceEEeeeeecccCCCCceeeceeeeeccc----cccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCC-C
Q 024767 2 EAAGKVTSIFVYPIKSCRGISVSQAPLTPTG----FRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEP-T 76 (263)
Q Consensus 2 ~~~~~V~~L~~yPIKS~~g~~v~~~~l~~~G----l~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~-~ 76 (263)
.+.++|++|++||||||+|++|.+..++..| ...||.|++++++|+++|+|..|+|.+|+.......+..+|.. .
T Consensus 40 ~~vg~v~slhiyPiKSC~~~~v~q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~~~~~~~v~~~~~~ 119 (336)
T KOG2362|consen 40 VPVGRVKSLHIYPIKSCKGIDVFQYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEMPDGAFLVDWPGPE 119 (336)
T ss_pred EEeeeeeeeEEEEeccccccchhHhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeecccccceeEEecCCCc
Confidence 4678999999999999999999999999998 6789999999999999999999999999988754433333331 1
Q ss_pred CCceEEEEeCCCceeEEcCCCCCCCcccEEEecccccccccchhHHHHHHHhh----------CCceEEEEecCCCCCCC
Q 024767 77 GSSYMVIRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYL----------GKSSRLVRYNAESETRP 146 (263)
Q Consensus 77 ~~~~L~l~~pg~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~wlS~~L----------g~~~rLv~~~~~~~~r~ 146 (263)
....+.+.+++++.+.+ ....|+....+++||+..+.|||++. ++++++.+.......|.
T Consensus 120 ~~s~~~~~~l~~~~~~~----------~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~ 189 (336)
T KOG2362|consen 120 KDSVLVFRVLGNKRLKV----------ATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWW 189 (336)
T ss_pred chhhhhhhhccCCcccc----------ccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCcccc
Confidence 22233333344433333 33455666677777777766666654 56788888766666678
Q ss_pred CCcCCCCCCeeeeccCCceeeeeHHHHHHHHHHcCCCCCCCcccccEEEec------CccceeeEecceeeeEEEecCCC
Q 024767 147 VDPEYAAGQITMFSDGYPFMLLSQGSLDALNKLLKEPVPINRFRPKYNSKI------RIMQYLSIIGQHTNFFYKIASSL 220 (263)
Q Consensus 147 ~~~~~~~~~~~~f~D~~pi~lis~aSl~~L~~~l~~~v~~~RFRpNIvv~g------d~w~~l~iIG~~~~~l~v~~~c~ 220 (263)
.+|.+..++..+|+|.+|+||+|++||++||.+|.++|+++||||||+|+| |.|.||+ ||++ +|+.+++|.
T Consensus 190 ~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~-Igd~--~~~~v~~Ct 266 (336)
T KOG2362|consen 190 NNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRLDKPVPMNNFRPNIVVDGCDAFAEDKWDEIR-IGDA--EFQCVAPCT 266 (336)
T ss_pred CCCccCccccccccccchhhhhchhhHHHHHhhhcCCccHhhcccceEEecCccccccccceEE-EccE--EEEEEeecc
Confidence 888888889999999999999999999999999999999999999999999 5889999 8998 899999999
Q ss_pred cccceee--ccCCCC--hhhHHHHhCCCCC-------CCceeEEecccC
Q 024767 221 HCSLLEL--CFGLVE--EPILIIASYPDSF-------CLDIFYGISSFL 258 (263)
Q Consensus 221 RC~~~~v--~tg~~~--~~l~~L~~~R~~~-------~g~~~fG~~~~~ 258 (263)
||..||| +||+.+ +|+++|.+||... -|.++||||+-+
T Consensus 267 RCiltTV~petG~~~k~qpletLr~fR~~~~~~~~~~~~sp~fGv~~~~ 315 (336)
T KOG2362|consen 267 RCILTTVDPETGEMSKMQPLETLREFRLDPGKPRKVHMGSPLFGVYAGL 315 (336)
T ss_pred ceeeeeeccccccccccCchhhHHhhhcCCcccccccCCCcccceeecc
Confidence 9999999 599875 8999999998764 577999998753
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=100.00 E-value=2.4e-35 Score=233.07 Aligned_cols=119 Identities=42% Similarity=0.839 Sum_probs=66.1
Q ss_pred ceEEeeeeecccCCCCceeeceeeeeccccc-cCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEE
Q 024767 4 AGKVTSIFVYPIKSCRGISVSQAPLTPTGFR-WDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMV 82 (263)
Q Consensus 4 ~~~V~~L~~yPIKS~~g~~v~~~~l~~~Gl~-~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~ 82 (263)
|++|++||+||||||+|++++++++++.|+. +||+|||+|++|+|+|+|++|+|++|++.++.+ ++.|+
T Consensus 1 m~~v~~L~iyPIKS~~g~~~~~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~----------~~~l~ 70 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEVDEAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDED----------DGTLT 70 (120)
T ss_dssp -------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE-------------SSEEE
T ss_pred CccccccccccccccccccccccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecc----------eeEEE
Confidence 5799999999999999999999999999996 999999999999999999999999999999742 68999
Q ss_pred EEeCCCceeEEcCCCCCCCcccEEEecccccccccchhHHHHHHHhhCCc
Q 024767 83 IRAPGMQALKIPMSKPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKS 132 (263)
Q Consensus 83 l~~pg~~~l~v~l~~~~~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~ 132 (263)
+++||++.+.++++........+.+|++.+.+++||+++++|||++||+|
T Consensus 71 l~~~~~~~l~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 71 LSAPGMPPLEIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EE-SSS-EEEEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EECCCCceEEEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 99999999999998666678899999999999999999999999999986
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.71 E-value=5.4e-18 Score=135.85 Aligned_cols=76 Identities=32% Similarity=0.359 Sum_probs=60.5
Q ss_pred CeeeeccCCceeeeeHHHHHHHHHHcCCCC-CCCcccccEEEec------Ccc--ceeeEecceeeeEEEecCCCcccce
Q 024767 155 QITMFSDGYPFMLLSQGSLDALNKLLKEPV-PINRFRPKYNSKI------RIM--QYLSIIGQHTNFFYKIASSLHCSLL 225 (263)
Q Consensus 155 ~~~~f~D~~pi~lis~aSl~~L~~~l~~~v-~~~RFRpNIvv~g------d~w--~~l~iIG~~~~~l~v~~~c~RC~~~ 225 (263)
....|+|.+||+|+|++|+++|+++++++. +++||||||+|+| +.| +.++ ||++ .|+++++|.||.++
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~-iG~~--~l~v~~~~~rC~~~ 87 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEPGLDPRRFRPNIVVDGLPPFDEDDWCGDRLR-IGDA--VLEVTQPCPRCVMP 87 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCCGGSCCCCT-SEEECS-T---TCCGBTEEEE-CTTE--EEEEEEE----CHH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccccCCHhHCCCCEEEeccccccccccceeeec-cCCE--EEEEEeCcCCCCcc
Confidence 457899999999999999999999999875 9999999999999 578 7799 8997 89999999999999
Q ss_pred ee--ccCCCC
Q 024767 226 EL--CFGLVE 233 (263)
Q Consensus 226 ~v--~tg~~~ 233 (263)
++ ++|.++
T Consensus 88 ~~~~~tg~~~ 97 (133)
T PF03473_consen 88 NVDPDTGERD 97 (133)
T ss_dssp HHHHCHCTCT
T ss_pred ceeeccCccc
Confidence 99 478764
No 6
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=98.99 E-value=1.3e-10 Score=111.86 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=79.3
Q ss_pred EEeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEEEEe
Q 024767 6 KVTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRA 85 (263)
Q Consensus 6 ~V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~l~~ 85 (263)
.+.++..|||| |+.++++++.+...|+.+||.||++|-+|..+++++.+++.+|+++++. +..
T Consensus 465 ~d~~~~s~~~~-~~~~EI~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~----------------~~d 527 (728)
T KOG2142|consen 465 FDAAVASYPIK-CAAFEIEEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV----------------QED 527 (728)
T ss_pred hhhhhhhhhhh-hceeEeeccCccccccccccccccccccccceeeecccceeeeccccch----------------hhh
Confidence 35678899999 9999999999999999999999999999999999999999999999842 111
Q ss_pred CCCceeEEcCC----CCCCCcccEEEecccccccccchhHHHHHHHhhCCc
Q 024767 86 PGMQALKIPMS----KPCDIADGVSVWEWSGSALDEGAEASNWFTNYLGKS 132 (263)
Q Consensus 86 pg~~~l~v~l~----~~~~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~ 132 (263)
.+++ .+|+++ ........+-.+ .+++++|+.+....|+++-.|+.
T Consensus 528 ~~~~-~~vs~~~sl~~~~a~~~s~~d~-~~c~~iDh~~~lgln~t~~r~r~ 576 (728)
T KOG2142|consen 528 EQSE-RRVSFPTSLEQGEASKCSSYDC-PPCRGIDHVDSLGLNLTTNRGRE 576 (728)
T ss_pred cccc-eeecchhhhhhhhhhhcccccC-ccccccchhhhhhHHhhhhhhhh
Confidence 1122 233322 111111111122 45888999999999999877764
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=96.79 E-value=0.0032 Score=57.41 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=49.4
Q ss_pred CceeeeeHHHHHHHHHHcCCC-CCCCcccccEEEec-C-----ccceeeEecc-eeeeEEEecCCCcccc
Q 024767 163 YPFMLLSQGSLDALNKLLKEP-VPINRFRPKYNSKI-R-----IMQYLSIIGQ-HTNFFYKIASSLHCSL 224 (263)
Q Consensus 163 ~pi~lis~aSl~~L~~~l~~~-v~~~RFRpNIvv~g-d-----~w~~l~iIG~-~~~~l~v~~~c~RC~~ 224 (263)
.++++++.++++.++ .++.+ +++-.||.||+++| + .-+.++ ||+ + .|+|+.||..|..
T Consensus 203 RqVsl~~~E~~~~~~-~~g~~~l~pG~fGENLtv~Gidl~~l~iGdrlr-IG~~a--vLeVt~pr~PC~~ 268 (308)
T PRK14499 203 RQVSLLDISSIKKME-EYGLKGLCFGKFAENITTENLDLQKISLGTKLK-IGDNV--VLEISQIGKKCHG 268 (308)
T ss_pred ceEEEcCHHHHHHHH-hcCCcCCCcccccceEEEcCcCHHHCCCCCEEE-ECCcE--EEEEEeCCCCCcC
Confidence 579999999999987 45655 99999999999999 2 346788 898 7 8999999999974
No 8
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.50 E-value=1.9 Score=37.16 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=54.2
Q ss_pred ceeeeeHHHHHHHHHHcCCCCCCCcccccEEEec-C-----ccceeeEecceeeeEEEecCCCcccceeeccC
Q 024767 164 PFMLLSQGSLDALNKLLKEPVPINRFRPKYNSKI-R-----IMQYLSIIGQHTNFFYKIASSLHCSLLELCFG 230 (263)
Q Consensus 164 pi~lis~aSl~~L~~~l~~~v~~~RFRpNIvv~g-d-----~w~~l~iIG~~~~~l~v~~~c~RC~~~~v~tg 230 (263)
.+.+.+...++...+.++..+.+-=|+=||.++| + .-+.++ ||++ .|+|+.|+.=|.-.+.-.+
T Consensus 56 Av~~y~~ehy~~w~~~lg~~l~pg~fGENltt~Gl~e~~l~iGdr~r-iG~a--llEVSqpR~PC~~l~~~~~ 125 (210)
T COG2258 56 AVCHYPREHYAAWETLLGRGLQPGAFGENLTTSGLDEANLCIGDRFR-IGEA--LLEVTQPRKPCSKLNKRFG 125 (210)
T ss_pred eEEEccHHHHHHHHHHhCCCCCcccccCceeecCcchhhccccCEEE-eccE--EEEecCCCCchHHHHHhcC
Confidence 6778999999999999999999999999999999 2 335688 7987 8999999999987766333
No 9
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=75.85 E-value=16 Score=31.88 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=53.0
Q ss_pred CceeeeeHHHHHHHHHHcCC---CCCCCcccccEEEec-C-----ccceeeEecceeeeEEEecCCCcccceeeccCCCC
Q 024767 163 YPFMLLSQGSLDALNKLLKE---PVPINRFRPKYNSKI-R-----IMQYLSIIGQHTNFFYKIASSLHCSLLELCFGLVE 233 (263)
Q Consensus 163 ~pi~lis~aSl~~L~~~l~~---~v~~~RFRpNIvv~g-d-----~w~~l~iIG~~~~~l~v~~~c~RC~~~~v~tg~~~ 233 (263)
-.+++.+.++.+..++.++. .+..--|==||.++| + .-+.++ ||++ .|+|+.|..-|--.+.-.|..+
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~~~~l~~G~fGENLtv~Gl~e~~v~IGD~~r-iG~a--vleVsqpR~PC~kl~~r~~~~~ 131 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVFIGDIFR-WGEA--LIQVTQPRSPCYKLNYHFDISD 131 (223)
T ss_pred ceEEEcCHhHHHHHHHHccccccccCCCCccCCEEecCcChhhCCccCEEE-ECCE--EEEEecCCCCCCchhhhccchh
Confidence 56889999999999988853 466678999999998 2 225688 7987 8999999999976665455433
No 10
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=46.84 E-value=71 Score=26.80 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=36.3
Q ss_pred CceEEeeeeecccCC---CCceeeceeeeeccc-c---c-cCceeEEEecCCceEecCCC
Q 024767 3 AAGKVTSIFVYPIKS---CRGISVSQAPLTPTG-F---R-WDRQWMVINNKGRAYTQRNE 54 (263)
Q Consensus 3 ~~~~V~~L~~yPIKS---~~g~~v~~~~l~~~G-l---~-~DR~~~l~d~~g~~lt~r~~ 54 (263)
.-|+=.+|++||-.+ -=.-.++.|+|...| + + +||..++++++|-.++....
T Consensus 14 ggG~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS~FpG~~R~l~~L~G~gl~L~~~~~ 73 (184)
T PF05962_consen 14 GGGTTREIAIYPEGSAKRDFDWRISIATVEADGPFSDFPGYDRILTLLEGNGLRLTHDGQ 73 (184)
T ss_dssp SSEEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE---TT-EEEEEEEESS-EEEEETTC
T ss_pred CCeEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCCCCCCCcEEEEEEeCCcEEEecCCC
Confidence 356778999999876 223577788998887 2 2 59999999998888777655
No 11
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=45.77 E-value=4.6 Score=28.34 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.5
Q ss_pred CCCCceeEEecccCCCCC
Q 024767 245 SFCLDIFYGISSFLPPLL 262 (263)
Q Consensus 245 ~~~g~~~fG~~~~~~~~~ 262 (263)
.++|+..||+|-|||-..
T Consensus 14 ~~PGK~~fG~YRFLP~FF 31 (69)
T PF15114_consen 14 LWPGKRRFGIYRFLPLFF 31 (69)
T ss_pred HCCCccccchhhhhHHHH
Confidence 478999999999999654
No 12
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=41.82 E-value=13 Score=15.88 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=5.4
Q ss_pred cccCCCC
Q 024767 255 SSFLPPL 261 (263)
Q Consensus 255 ~~~~~~~ 261 (263)
++||||.
T Consensus 2 ~eYLpP~ 8 (9)
T PF02757_consen 2 NEYLPPV 8 (9)
T ss_pred ccccCCC
Confidence 4789985
No 13
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=40.64 E-value=35 Score=31.32 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCceEEeeeeecccCCCCceeeceeeee-ccccccCc
Q 024767 2 EAAGKVTSIFVYPIKSCRGISVSQAPLT-PTGFRWDR 37 (263)
Q Consensus 2 ~~~~~V~~L~~yPIKS~~g~~v~~~~l~-~~Gl~~DR 37 (263)
.++++|.+|++.|-++..-.+++++.+. ..|+++|+
T Consensus 160 ~~~~~VlsI~is~~~gi~K~~v~~~~~v~~~GieGD~ 196 (308)
T PRK14499 160 NKTAKVVSINISRQKGTPKEPVEEAVLIENHGIEGDA 196 (308)
T ss_pred CCCCEEEEEEeCCCCCccceecCceEEEccCCCCCCc
Confidence 3578999999999999999999987655 78999998
No 14
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=31.55 E-value=28 Score=23.41 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=12.0
Q ss_pred EEecCCCcccceee
Q 024767 214 YKIASSLHCSLLEL 227 (263)
Q Consensus 214 ~v~~~c~RC~~~~v 227 (263)
.+...|+||..+|-
T Consensus 22 yle~KCPrCK~vN~ 35 (60)
T COG4416 22 YLEKKCPRCKEVNE 35 (60)
T ss_pred eeeecCCccceeee
Confidence 56678999999987
No 15
>KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only]
Probab=26.13 E-value=51 Score=30.20 Aligned_cols=26 Identities=0% Similarity=-0.167 Sum_probs=18.9
Q ss_pred ceeEEEecCCceEecCCCCceeEEEE
Q 024767 37 RQWMVINNKGRAYTQRNEPKLALVQI 62 (263)
Q Consensus 37 R~~~l~d~~g~~lt~r~~p~L~~i~~ 62 (263)
+-|++....+-.+++.+.+....+.-
T Consensus 87 kg~~iTaRv~P~l~~ies~~~~~~~~ 112 (336)
T KOG2362|consen 87 KGKFITARVKPKLVLIESEMPDGAFL 112 (336)
T ss_pred cceEEEeeccceEEEeecccccceeE
Confidence 77888877777888887777655543
No 16
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=26.11 E-value=36 Score=28.22 Aligned_cols=12 Identities=25% Similarity=0.088 Sum_probs=10.8
Q ss_pred CCcccccEEEec
Q 024767 186 INRFRPKYNSKI 197 (263)
Q Consensus 186 ~~RFRpNIvv~g 197 (263)
++|-||||+|.|
T Consensus 3 ~~r~~PNILvtG 14 (176)
T KOG3347|consen 3 PERERPNILVTG 14 (176)
T ss_pred hhhcCCCEEEeC
Confidence 569999999998
No 17
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=25.49 E-value=1.6e+02 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.355 Sum_probs=28.1
Q ss_pred eEEEEeccCcccccCCCCCCCceEEEEeCCCceeEEcCCCCCC
Q 024767 58 ALVQIELPNEAFLEGWEPTGSSYMVIRAPGMQALKIPMSKPCD 100 (263)
Q Consensus 58 ~~i~~~~~~~~~~~~~~~~~~~~L~l~~pg~~~l~v~l~~~~~ 100 (263)
.+|-+.|=++ ..+|..+ ++.++|+.|+++++++.++....
T Consensus 114 vLi~aFIYEG--~~~w~~~-dGvvTik~P~~~~I~~qm~e~~~ 153 (200)
T COG4110 114 VLIYAFIYEG--VPSWDKT-DGVVTIKVPDQPPIETQLTEGEN 153 (200)
T ss_pred eeeEEEEecC--CcCcccc-CCEEEEecCCCCceEEEccCCcc
Confidence 5666655332 2356554 58999999999999999987644
No 18
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=22.99 E-value=47 Score=22.04 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=14.5
Q ss_pred EEEecCCCcccceeeccCC
Q 024767 213 FYKIASSLHCSLLELCFGL 231 (263)
Q Consensus 213 l~v~~~c~RC~~~~v~tg~ 231 (263)
..+.-.|+||..+|.-.+.
T Consensus 21 ~~leIKCpRC~tiN~~~a~ 39 (51)
T PF10122_consen 21 IELEIKCPRCKTINHVRAT 39 (51)
T ss_pred cEEEEECCCCCccceEecc
Confidence 4677789999999994333
No 19
>PHA02881 hypothetical protein; Provisional
Probab=21.70 E-value=1.1e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCCCCcccccEEEec--Ccc--c--------eeeEecceeeeEEEecCCCcccceee
Q 024767 183 PVPINRFRPKYNSKI--RIM--Q--------YLSIIGQHTNFFYKIASSLHCSLLEL 227 (263)
Q Consensus 183 ~v~~~RFRpNIvv~g--d~w--~--------~l~iIG~~~~~l~v~~~c~RC~~~~v 227 (263)
.+|..-|-|||+-+| |.+ . -+. ||.+ =+-..-|..|.-+..
T Consensus 17 did~s~fsp~iiysgl~dsy~f~~vdalla~ni~-i~i~---krr~~lcakc~ni~~ 69 (161)
T PHA02881 17 DIDISMFSPNIIYSGLLDSYNFGFVDALLATNID-IGIS---KRRENLCAKCNNICI 69 (161)
T ss_pred cccccccCcceEEeccchhhhhhhHHHHHhccce-EEEE---eeccchhHhhhhhhe
Confidence 688999999999999 533 1 255 5654 345567888887766
Done!