Query 024767
Match_columns 263
No_of_seqs 167 out of 1074
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 7.1E-35 2.4E-39 234.0 10.8 125 7-150 1-128 (136)
2 1oru_A YUAD protein; structura 99.4 1.4E-12 4.6E-17 110.2 11.9 78 161-241 65-155 (195)
3 1o65_A Hypothetical protein YI 98.1 2.3E-06 8E-11 74.3 5.0 75 163-241 67-150 (246)
4 3esg_A HUTD, putative uncharac 29.6 1.6E+02 0.0055 23.9 7.0 50 4-53 28-84 (193)
5 2gdl_A Myeloid antimicrobial p 21.6 23 0.0008 19.4 0.3 11 185-195 13-23 (31)
6 1n0x_P B2.1 peptide, immunoglo 17.0 77 0.0026 16.6 1.7 18 35-52 1-18 (26)
7 3lyd_A Uncharacterized protein 13.8 57 0.002 25.8 1.0 14 184-197 44-57 (161)
8 2jz6_A 50S ribosomal protein L 13.2 59 0.002 22.5 0.8 37 184-225 29-65 (77)
9 2rhf_A DNA helicase RECQ; HRDC 12.6 76 0.0026 21.3 1.3 22 161-182 23-44 (77)
10 1hym_B CMTI-V, hydrolyzed cucu 12.6 1.5E+02 0.0051 16.0 2.2 16 33-48 2-17 (26)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=100.00 E-value=7.1e-35 Score=234.01 Aligned_cols=125 Identities=28% Similarity=0.502 Sum_probs=112.7
Q ss_pred EeeeeecccCCCCceeeceeeeeccccccCceeEEEecCCceEecCCCCceeEEEEeccCcccccCCCCCCCceEEEEeC
Q 024767 7 VTSIFVYPIKSCRGISVSQAPLTPTGFRWDRQWMVINNKGRAYTQRNEPKLALVQIELPNEAFLEGWEPTGSSYMVIRAP 86 (263)
Q Consensus 7 V~~L~~yPIKS~~g~~v~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~L~l~~p 86 (263)
|++||+||||||+|++|+++. .|||+|||+|++|+|+|||++|+|++|++.++. +.|+|++|
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~p 62 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKAP 62 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEECS
T ss_pred CceEEEeccccCCceecCccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEeC
Confidence 579999999999999999987 999999999999999999999999999999963 68999999
Q ss_pred CCceeEEcCCCCC---CCcccEEEecccccccccchhHHHHHHHhhCCceEEEEecCCCCCCCCCcC
Q 024767 87 GMQALKIPMSKPC---DIADGVSVWEWSGSALDEGAEASNWFTNYLGKSSRLVRYNAESETRPVDPE 150 (263)
Q Consensus 87 g~~~l~v~l~~~~---~~~~~~~vw~~~~~~~d~g~~~~~wlS~~Lg~~~rLv~~~~~~~~r~~~~~ 150 (263)
|++++.+++++.. .....++||++.+.+++||+++++|||++||.|++|++++++. .|.+++.
T Consensus 63 g~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~-~R~~~~~ 128 (136)
T 2exn_A 63 GMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDM-AEVRWPS 128 (136)
T ss_dssp SSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTT-CCCCCCC
T ss_pred CCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCC-ccccCcc
Confidence 9999999998654 2456799999999999999999999999999999999998765 3555544
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.42 E-value=1.4e-12 Score=110.22 Aligned_cols=78 Identities=4% Similarity=-0.075 Sum_probs=60.9
Q ss_pred cCCceeeeeHHHHHHHHHHcCCC-CCCCcccccEEEecC-------ccceeeEecc-eeeeEEEecCCCcccce----ee
Q 024767 161 DGYPFMLLSQGSLDALNKLLKEP-VPINRFRPKYNSKIR-------IMQYLSIIGQ-HTNFFYKIASSLHCSLL----EL 227 (263)
Q Consensus 161 D~~pi~lis~aSl~~L~~~l~~~-v~~~RFRpNIvv~gd-------~w~~l~iIG~-~~~~l~v~~~c~RC~~~----~v 227 (263)
|..+|++++.+|++++++.++.+ +++.+||+||+++|- .|+.|+ ||+ + .|+|+++|.||..+ +.
T Consensus 65 ~~r~V~l~~~e~~~~~~~~~g~~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~-iG~~a--~leVt~~~~pC~~~~~~i~~ 141 (195)
T 1oru_A 65 NRRQISIVSIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRII-FPSGA--ALLCEGENDPCIQPGEVIQS 141 (195)
T ss_dssp CCCCEEEEEHHHHHHHHHHHTCSCCCGGGGTCSEEEESCTTGGGCCTTCEEE-CTTSC--EEEEEEECCCCHHHHHHHHH
T ss_pred CCceEEECCHHHHHHHHHHcCCCCCCcccccCCEEEeCCCChhhCCCCCEEE-ECCCE--EEEEeeccCCCCCCccccch
Confidence 45689999999999999998876 999999999999982 246689 896 7 89999999999983 43
Q ss_pred ccCCCChhhHHHHh
Q 024767 228 CFGLVEEPILIIAS 241 (263)
Q Consensus 228 ~tg~~~~~l~~L~~ 241 (263)
.++......+.+.+
T Consensus 142 ~~~~~~g~~~~~~~ 155 (195)
T 1oru_A 142 YYPDQPKLASAFVR 155 (195)
T ss_dssp HSTTSTTHHHHHHH
T ss_pred hcccccchHHHHHh
Confidence 34222334455554
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=98.11 E-value=2.3e-06 Score=74.30 Aligned_cols=75 Identities=8% Similarity=0.106 Sum_probs=61.9
Q ss_pred CceeeeeHHHHHHHHHHcCC---CCCCCcccccEEEec-C---cc--ceeeEecceeeeEEEecCCCcccceeeccCCCC
Q 024767 163 YPFMLLSQGSLDALNKLLKE---PVPINRFRPKYNSKI-R---IM--QYLSIIGQHTNFFYKIASSLHCSLLELCFGLVE 233 (263)
Q Consensus 163 ~pi~lis~aSl~~L~~~l~~---~v~~~RFRpNIvv~g-d---~w--~~l~iIG~~~~~l~v~~~c~RC~~~~v~tg~~~ 233 (263)
.+|++++.+|++.+++.++. .+++-+||-||+++| + -| +.++ ||++ .|+|+.+|.+|..++..+|.++
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~~~~l~pg~fgENLtv~Gl~~~~l~iG~rlr-IG~a--vLeVTq~r~PC~~~~~~~g~~~ 143 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFR-WGEA--LIQVSQPRSPCYKLNYHFDISD 143 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGGGGGCSTTTTCCSEEESSCCTTTCBTTCEEE-ETTE--EEEEEEECCCCTHHHHHTTCTT
T ss_pred CeEEECCHHHHHHHHHHhCCCcccCCcccccCCEEECCcchhhCCCCCEEE-ECCE--EEEEEeCcCccHhHHHHhcCcC
Confidence 56999999999999998876 489999999999999 3 24 5699 8997 8999999999999888777653
Q ss_pred hhhHHHHh
Q 024767 234 EPILIIAS 241 (263)
Q Consensus 234 ~~l~~L~~ 241 (263)
.++.+.+
T Consensus 144 -~~~~~~~ 150 (246)
T 1o65_A 144 -IAQLMQN 150 (246)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHhh
Confidence 3455544
No 4
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=29.59 E-value=1.6e+02 Score=23.86 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=38.5
Q ss_pred ceEEeeeeecccCCCC--ceeeceeeeeccc-c----ccCceeEEEecCCceEecCC
Q 024767 4 AGKVTSIFVYPIKSCR--GISVSQAPLTPTG-F----RWDRQWMVINNKGRAYTQRN 53 (263)
Q Consensus 4 ~~~V~~L~~yPIKS~~--g~~v~~~~l~~~G-l----~~DR~~~l~d~~g~~lt~r~ 53 (263)
-|+=.+|++||-.+.+ .-.++.|++...| + -+||..++.+++|-.++...
T Consensus 28 gG~TrEI~~~P~~~~~~F~wRiSiA~V~~~g~FS~FpG~dR~l~lL~G~gl~L~~~g 84 (193)
T 3esg_A 28 GGSTEEITRDAGTGLEGFGWRLSIADIGESGGFSSFAGYQRVITVIQGAGMVLTVDG 84 (193)
T ss_dssp SEEEEEEEECCCBTTTBCSEEEEEEEECSSEECCCCTTCEEEEEEEESSCEEEEETT
T ss_pred CeEEEEEEEcCCCcCCCceEEEEEEEEcCCCCCCCCCCceEEEEEEcCCcEEEEeCC
Confidence 4667899999986544 3567789999877 3 26999999999887777543
No 5
>2gdl_A Myeloid antimicrobial peptide 27; cathelicidin, alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=21.60 E-value=23 Score=19.40 Aligned_cols=11 Identities=55% Similarity=0.863 Sum_probs=8.0
Q ss_pred CCCcccccEEE
Q 024767 185 PINRFRPKYNS 195 (263)
Q Consensus 185 ~~~RFRpNIvv 195 (263)
.++||||.+-|
T Consensus 13 kirrfrpkvti 23 (31)
T 2gdl_A 13 KIRRFRPKVTI 23 (31)
T ss_dssp SCCCCTTCCHH
T ss_pred HHHhcCCceEE
Confidence 47899997543
No 6
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=17.02 E-value=77 Score=16.63 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.4
Q ss_pred cCceeEEEecCCceEecC
Q 024767 35 WDRQWMVINNKGRAYTQR 52 (263)
Q Consensus 35 ~DR~~~l~d~~g~~lt~r 52 (263)
+.|.||+.|-.++++.+.
T Consensus 1 hersymfsdlenrciaae 18 (26)
T 1n0x_P 1 HERSYMFSDLENRCIAAE 18 (26)
T ss_dssp CCCCEEEETTTTEEEECS
T ss_pred CcchhhhhHHHHHHHHHH
Confidence 368899998888877543
No 7
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=13.79 E-value=57 Score=25.80 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=10.8
Q ss_pred CCCCcccccEEEec
Q 024767 184 VPINRFRPKYNSKI 197 (263)
Q Consensus 184 v~~~RFRpNIvv~g 197 (263)
+-..-||||+||.-
T Consensus 44 ~~~~~F~pN~vVtv 57 (161)
T 3lyd_A 44 TPPQGFTPNIIGTV 57 (161)
T ss_dssp SCCSSSCCEEEEEE
T ss_pred CCCCCccccEEEEE
Confidence 33567999999873
No 8
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=13.19 E-value=59 Score=22.48 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=21.4
Q ss_pred CCCCcccccEEEecCccceeeEecceeeeEEEecCCCcccce
Q 024767 184 VPINRFRPKYNSKIRIMQYLSIIGQHTNFFYKIASSLHCSLL 225 (263)
Q Consensus 184 v~~~RFRpNIvv~gd~w~~l~iIG~~~~~l~v~~~c~RC~~~ 225 (263)
-.-|||.|||--.- .|.+ -|. .+.++|...|-|+.-+
T Consensus 29 kTkR~~~PNLq~vr-~~~~---~g~-~~rl~Vst~~LRtgkv 65 (77)
T 2jz6_A 29 KSERWFRPNLQKVR-VVLP---DGT-IKRMRVCTSCLKSGKV 65 (77)
T ss_dssp CCSSSCBTTEEEEE-EEET---TTE-EEEEEEEHHHHHHCCS
T ss_pred ccCcccccceEEEE-EEec---CCc-EEEEEEEhHHeeeccE
Confidence 57899999996442 1210 133 2356776666666543
No 9
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=12.65 E-value=76 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.5
Q ss_pred cCCceeeeeHHHHHHHHHHcCC
Q 024767 161 DGYPFMLLSQGSLDALNKLLKE 182 (263)
Q Consensus 161 D~~pi~lis~aSl~~L~~~l~~ 182 (263)
|.+|+.|++.++|.++.+..+.
T Consensus 23 ~vpp~~I~~d~~L~~iA~~~P~ 44 (77)
T 2rhf_A 23 GYSAFVVFTNATLEALAARQPR 44 (77)
T ss_dssp CCCHHHHCCHHHHHHHHHHCCC
T ss_pred CCCcceeeCHHHHHHHHHhCCC
Confidence 6688999999999999998775
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=12.58 E-value=1.5e+02 Score=15.97 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.3
Q ss_pred cccCceeEEEecCCce
Q 024767 33 FRWDRQWMVINNKGRA 48 (263)
Q Consensus 33 l~~DR~~~l~d~~g~~ 48 (263)
+.-||.|.++|.+|..
T Consensus 2 f~~~RVrvfvd~~g~V 17 (26)
T 1hym_B 2 FRCNRVRIWVNKRGLV 17 (26)
T ss_dssp CCTTEEEEEEETTTEE
T ss_pred CCCCEEEEEECCCCcE
Confidence 3568999999987754
Done!