Query 024770
Match_columns 262
No_of_seqs 172 out of 664
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 9.2E-35 3.1E-39 242.9 17.2 126 71-201 11-136 (147)
2 1z9l_A Vesicle-associated memb 100.0 6.1E-34 2.1E-38 232.1 16.7 121 71-196 7-127 (128)
3 1wic_A Hypothetical protein ri 100.0 3.6E-34 1.2E-38 241.2 13.4 128 71-206 15-147 (152)
4 1msp_A MSP, major sperm protei 100.0 1.1E-29 3.6E-34 207.7 15.6 119 71-196 5-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 6.3E-28 2.2E-32 193.6 13.6 104 75-194 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 4.8E-27 1.6E-31 190.8 14.7 105 74-194 10-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.0 2.8E-05 9.6E-10 61.6 9.7 62 75-140 26-88 (122)
8 3qbt_B Inositol polyphosphate 97.8 9.3E-05 3.2E-09 60.7 9.6 69 73-142 25-100 (140)
9 2e6j_A Hydin protein; PAPD, st 97.6 0.00019 6.5E-09 55.1 8.0 67 73-140 8-78 (112)
10 3qis_A Inositol polyphosphate 97.3 0.00075 2.6E-08 63.2 9.5 70 72-142 27-103 (366)
11 2qsv_A Uncharacterized protein 95.5 0.051 1.8E-06 46.8 8.5 64 75-140 3-67 (220)
12 2qsv_A Uncharacterized protein 94.6 0.14 4.6E-06 44.2 8.7 66 72-140 117-183 (220)
13 3q48_A Chaperone CUPB2; IG fol 90.7 3.8 0.00013 36.4 12.5 108 75-198 30-147 (257)
14 2co7_B SAFB chaperone, putativ 86.1 6.1 0.00021 34.2 10.5 62 75-140 14-80 (221)
15 4djm_A DRAB; chaperone, PILI; 83.3 7.8 0.00027 34.1 10.0 62 75-140 24-90 (239)
16 2xg5_A PAPD, chaperone protein 82.5 12 0.00042 32.2 10.8 62 75-140 2-71 (218)
17 2g30_A AP-2 complex subunit be 79.7 3.6 0.00012 36.7 6.5 51 90-141 54-110 (258)
18 1l4i_A SFAE protein; periplasm 79.5 28 0.00096 29.6 13.4 110 75-198 2-118 (206)
19 4ay0_A Chaperone protein CAF1M 78.4 26 0.0009 30.2 11.5 108 75-198 14-128 (218)
20 3gfu_C Chaperone protein FAEE; 76.6 38 0.0013 29.5 13.0 105 75-197 2-113 (224)
21 1klf_A FIMC chaperone, chapero 70.3 35 0.0012 29.0 10.1 62 75-140 2-69 (205)
22 1yew_A Particulate methane mon 69.5 26 0.00088 33.2 9.7 68 70-140 245-334 (382)
23 1gyu_A Adapter-related protein 67.4 23 0.00077 28.6 7.9 42 91-132 47-92 (140)
24 3jt0_A Lamin-B1; structural ge 67.0 13 0.00045 30.5 6.4 42 96-137 39-85 (144)
25 3rfr_A PMOB; membrane, oxidore 64.4 19 0.00064 34.6 7.7 64 73-140 282-366 (419)
26 2r39_A FIXG-related protein; s 62.8 21 0.00071 27.4 6.6 68 74-141 12-82 (118)
27 2lll_A Lamin-B2; immunoglobuli 58.4 19 0.00065 29.3 5.8 42 96-137 35-82 (139)
28 3hs8_A Adaptor protein complex 52.9 32 0.0011 30.8 6.9 51 90-140 67-124 (273)
29 3kyd_D Small ubiquitin-related 50.9 16 0.00054 28.9 4.1 29 94-122 40-73 (115)
30 2npi_A Protein CLP1; CLP1-PCF1 48.0 5.9 0.0002 37.8 1.3 20 72-91 38-57 (460)
31 1uh6_A Ubiquitin-like 5; beta- 41.6 19 0.00066 27.6 3.1 45 37-81 5-49 (100)
32 3idu_A Uncharacterized protein 40.0 68 0.0023 25.4 6.3 52 88-140 30-82 (127)
33 3e38_A Two-domain protein cont 36.0 48 0.0016 30.4 5.4 65 95-170 270-334 (343)
34 3mnm_A ADP-ribosylation factor 27.9 2.1E+02 0.0073 22.2 9.7 41 91-131 31-75 (123)
35 1xi4_J LCA, clathrin light cha 27.2 36 0.0012 24.7 2.4 19 235-253 6-24 (70)
36 3hn9_A Lamin-B1; structural ge 25.9 82 0.0028 24.8 4.5 41 96-137 26-72 (123)
37 1klf_A FIMC chaperone, chapero 24.9 1.2E+02 0.0041 25.6 5.7 48 82-138 130-177 (205)
38 1wm3_A Ubiquitin-like protein 24.2 67 0.0023 22.3 3.3 21 96-116 3-23 (72)
39 3vta_A Cucumisin; subtilisin-l 23.4 2.4E+02 0.0081 27.5 8.2 49 92-140 538-589 (621)
40 4ay0_A Chaperone protein CAF1M 23.4 77 0.0026 27.2 4.2 49 82-139 140-188 (218)
41 2xzz_A Protein-glutamine gamma 23.1 2.4E+02 0.0083 21.2 6.7 47 90-140 19-71 (102)
42 3o0l_A Uncharacterized protein 22.9 1.9E+02 0.0065 22.2 6.0 52 89-140 36-94 (112)
43 2pny_A Isopentenyl-diphosphate 22.6 2.4E+02 0.0083 24.1 7.3 68 61-131 28-111 (246)
44 3zy7_A AP-1 complex subunit ga 22.3 93 0.0032 24.2 4.1 45 70-114 55-99 (122)
45 4gio_A Putative lipoprotein; u 21.9 2E+02 0.0069 22.0 5.9 51 90-140 35-91 (107)
46 2huh_A Putative DNA mismatch r 20.6 1.2E+02 0.0041 25.0 4.6 66 94-170 29-94 (147)
47 4djm_A DRAB; chaperone, PILI; 20.1 81 0.0028 27.5 3.7 48 81-137 161-209 (239)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=9.2e-35 Score=242.94 Aligned_cols=126 Identities=28% Similarity=0.448 Sum_probs=115.0
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (262)
Q Consensus 71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~ 150 (262)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+| ++...
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~-- 85 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDY-- 85 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCC--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcC--
Confidence 4678999998899999999999999999999999999999999999999999999999999999999999 66533
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCCC
Q 024770 151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP 201 (262)
Q Consensus 151 p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p~~p 201 (262)
+++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..+
T Consensus 86 ~p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 86 DPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp CTTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred CccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 245789999999999999887778999999988899999999999887543
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=6.1e-34 Score=232.10 Aligned_cols=121 Identities=27% Similarity=0.457 Sum_probs=111.4
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (262)
Q Consensus 71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~ 150 (262)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|++ ++....
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~- 82 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD- 82 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999999 665332
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEe
Q 024770 151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 196 (262)
Q Consensus 151 p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~ 196 (262)
++++|+|||+||++.++++.+++.++|++..+..++++||||+|.
T Consensus 83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred -cccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 357899999999999998877789999999888999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=3.6e-34 Score=241.23 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=113.6
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (262)
Q Consensus 71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~ 150 (262)
++++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|+| ++...
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~~-- 89 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGLT-- 89 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSSC--
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCccc--
Confidence 5678999998899999999999999999999999999999999999999999999999999999999999 55432
Q ss_pred CCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCCcceeEEEEEEEeCC-CCCChHHH
Q 024770 151 PMYQKSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPALE 206 (262)
Q Consensus 151 p~~~k~kDKFlVqS~~v~--~~~--d~~~elfk~~~~~~i~e~kLrVvf~~p-~~psp~~e 206 (262)
.+|+|||+||++.++ ++. +++.++|++..+..++++||||+|+.+ +++|++.+
T Consensus 90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~ 147 (152)
T 1wic_A 90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS 147 (152)
T ss_dssp ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCcccc
Confidence 378999999999998 443 457899999988899999999999875 45565543
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.97 E-value=1.1e-29 Score=207.68 Aligned_cols=119 Identities=16% Similarity=0.222 Sum_probs=101.9
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 024770 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (262)
Q Consensus 71 ~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~ 150 (262)
....|.++|.++|.|++++++++++.|+|+|+|+.+||||||||+|++|||||++|+|+||+++.|.|+| ++....+
T Consensus 5 ~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~ 81 (126)
T 1msp_A 5 PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT 81 (126)
T ss_dssp CCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG
T ss_pred CCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999 6655332
Q ss_pred CCCCCCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEe
Q 024770 151 PMYQKSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFL 196 (262)
Q Consensus 151 p~~~k~kDKFlVqS~~v~~~~--d~~~elfk~~~~~~i~e~kLrVvf~ 196 (262)
. ...+|||+||++.++++. |+ .+.|.... ..+..++|+|.|.
T Consensus 82 -~-~~~kDKf~Vq~~~~p~~~~~~~-~~~wf~~d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 82 -E-DLNNDRITIEWTNTPDGAAKQF-RREWFQGD-GMVRRKNLPIEYN 125 (126)
T ss_dssp -S-CCSSCEEEEEEEECCTTCCSSC-CTHHHHSS-SCCEEEEEEEEEE
T ss_pred -C-ccCCCEEEEEEEECCCCcchhh-hHHhhcCC-CceEEEEEEEEec
Confidence 2 345999999999999876 45 45555443 3578999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=6.3e-28 Score=193.57 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=91.5
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 154 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~ 154 (262)
|.|+|. +|.|.++.+ .+.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++ ++. .
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~ 68 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A 68 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence 789998 699998843 69999999999999999999999999999999999999999999999 553 2
Q ss_pred CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 024770 155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194 (262)
Q Consensus 155 k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVv 194 (262)
.++|||+||++.++++..++.++|++.... .+.+|++.
T Consensus 69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~ 106 (109)
T 1row_A 69 PKEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS 106 (109)
T ss_dssp CEEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence 379999999999988877789999987653 56677664
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=4.8e-27 Score=190.75 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=93.1
Q ss_pred cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCC
Q 024770 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY 153 (262)
Q Consensus 74 lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~ 153 (262)
++.++|. +|.|+++.+ ++.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++ ++.
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~------- 75 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG------- 75 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence 5899997 999998854 89999999999999999999999999999999999999999999999 553
Q ss_pred CCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 024770 154 QKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194 (262)
Q Consensus 154 ~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVv 194 (262)
..++|||+||++.++++..++.++|++..+ ..+.+|++.
T Consensus 76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp CSCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 136999999999999877667999999765 477788764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=2.8e-05 Score=61.58 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=53.8
Q ss_pred EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|.+ | +.|.|..- .+......|.|+|.++.++.|++++. .-|.|.|..|.|+||+++.|.|+.
T Consensus 26 l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F 88 (122)
T 2ys4_A 26 LDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF 88 (122)
T ss_dssp CCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE
T ss_pred ECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE
Confidence 444 5 48888665 36678899999999999999999985 469999999999999999999998
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.83 E-value=9.3e-05 Score=60.72 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=57.7
Q ss_pred CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeec------CCCceeecCCceeeCCCCeEEEEEEeec
Q 024770 73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKFV 142 (262)
Q Consensus 73 ~lL~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTT------aPk~Y~VRPn~GiI~Pgesv~I~Vtl~v 142 (262)
.-+.|++. .|.|--- ++...+..|+|+|++.-+..|++.-. .+.-+.|.|..|.|.||+++.|.|++++
T Consensus 25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 45778886 9999743 57778999999999999999999753 3345889999999999999999999854
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=0.00019 Score=55.09 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=56.4
Q ss_pred CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCC---CceeecCCceeeCCCCeEEEEEEe
Q 024770 73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 73 ~lL~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaP---k~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
..+.+++. .|.|-.- .+...+..++|+|+++.++.|++..... ..|.+.|..|.|+||++..|.|++
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 45888886 7888654 4677889999999999999999964221 459999999999999999999998
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.34 E-value=0.00075 Score=63.16 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCcEEecCCCceEeec-CCCCeEEEEEEEEcCCCCeEEEEEeecCCC-c-----eeecCCceeeCCCCeEEEEEEeec
Q 024770 72 RRRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV 142 (262)
Q Consensus 72 ~~lL~IdP~~~L~F~~-e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk-~-----Y~VRPn~GiI~Pgesv~I~Vtl~v 142 (262)
..-+.|++. .|.|-- .++...+..|+|+|++.-++.|++.....+ . +.|.|..|+|.||+++.|.|++++
T Consensus 27 ~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 27 LPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp -CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 345888886 999953 367789999999999999999999764222 2 569999999999999999999864
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.47 E-value=0.051 Score=46.84 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=55.4
Q ss_pred EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|+++|. .+.|.-- .|......++++|+++.++-++.... |..+..++..+.|+||++..|.|++
T Consensus 3 i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 3 LQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp EEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred eEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 889996 9999764 35566779999999999999997644 8888889999999999999999998
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.64 E-value=0.14 Score=44.16 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEE-EEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 72 ~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAF-KVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
...|.++ . .+.|-.-.+......++|+|+++.++.+ +|+|++ +...+.++.+.|.||++..|.|++
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 4458888 5 8888743477888999999999998888 888775 688888999999999999999998
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=90.66 E-value=3.8 Score=36.45 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC------C----CceeecCCceeeCCCCeEEEEEEeeccC
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVEL 144 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa------P----k~Y~VRPn~GiI~Pgesv~I~Vtl~v~q 144 (262)
|.|+|. .+.|+.... ..+|+|+|.++.++.--+-..+ | .-|.|-|+.-.|+||+...|.|.+ .
T Consensus 30 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~ 102 (257)
T 3q48_A 30 LIAQGT-RVVFPASER---EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---L 102 (257)
T ss_dssp -CCSCS-EEEEETTCS---EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---C
T ss_pred EEEcce-EEEEeCCCc---EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---C
Confidence 677776 777775432 4899999999887665543221 1 139999999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 024770 145 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 198 (262)
Q Consensus 145 p~~~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p 198 (262)
.. ..|.|... -|-+....+++..+. ....=......+|++-|-+.
T Consensus 103 ~~--~LP~DrES--lf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~ 147 (257)
T 3q48_A 103 KA--PLPTDRES--LFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPS 147 (257)
T ss_dssp CC--CCCSSSCE--EEEEEEEEECCC--------------CCEEEEEEEEEECT
T ss_pred CC--CCCCCcee--EEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEecc
Confidence 11 12334433 455555555443211 11112345678888887654
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=86.06 E-value=6.1 Score=34.22 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=46.8
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecC-----CCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA-----PKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa-----Pk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|.|++. .+.|+.... ..+|+|.|.++.++.--+-..+ ..-|.|-|+.-.|+||+...|.|.+
T Consensus 14 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 80 (221)
T 2co7_B 14 VKLGAT-RVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR 80 (221)
T ss_dssp CEESCS-EEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred EEEcce-EEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence 567776 777775433 4799999999887655543211 1249999999999999999999987
No 15
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=83.33 E-value=7.8 Score=34.09 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=45.7
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec-----CCCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|.|++. -+.|+.... ..+|+|+|.++.++.--+-.. ...-|.|-|+.-.|+||+...|.|.+
T Consensus 24 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 90 (239)
T 4djm_A 24 LHLGAT-RVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR 90 (239)
T ss_dssp CEESCS-EEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred EEEcce-EEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 667776 677765433 479999999887755433211 12249999999999999999999986
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=82.51 E-value=12 Score=32.24 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=47.0
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEeecC-------CCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTTa-------Pk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|.|++. -+.|+.... ..+|+|+|.++. ++.--+-..+ ..-|.|-|+.-.|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 71 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST 71 (218)
T ss_dssp EEESCS-EEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred cEeCce-EEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567775 777776543 579999999887 7665543321 2349999999999999999999987
No 17
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=79.68 E-value=3.6 Score=36.72 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=32.9
Q ss_pred CCeEEEEEEEEcCCCCeE-EEEEeecCCCceeecCCc-----eeeCCCCeEEEEEEee
Q 024770 90 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPG-----AILAPGESLIATVFKF 141 (262)
Q Consensus 90 ~k~~~s~LtL~N~S~~~V-AFKVKTTaPk~Y~VRPn~-----GiI~Pgesv~I~Vtl~ 141 (262)
+.++.=.|+|+|.+..++ -|.|+-+ ...|-+-|.. .-|+||+++++.|-+-
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 567888999999987542 2333332 2333333321 3499999999999873
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=79.48 E-value=28 Score=29.59 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=66.3
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCC-CeEEEEEeecC-----CCceeecCCceeeCCCCeEEEEEE-eeccCCCC
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSK-SHVAFKFQTTA-----PKSCFMRPPGAILAPGESLIATVF-KFVELPEN 147 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~-~~VAFKVKTTa-----Pk~Y~VRPn~GiI~Pgesv~I~Vt-l~v~qp~~ 147 (262)
|.|++. -+.|+.... ..+|+|+|.++ .++.--+-..+ ..-|.|-|+.-.|+||+...|.|. + . .
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~-~--~-- 72 (206)
T 1l4i_A 2 VALGAT-RVIYPEGQK---QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA-T--N-- 72 (206)
T ss_dssp EEESCS-EEEEETTCS---EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC-C--T--
T ss_pred eEeCce-EEEEeCCCc---EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec-C--C--
Confidence 566775 777776533 57999999986 66655543211 124999999999999999999998 6 1 1
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 024770 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 198 (262)
Q Consensus 148 ~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p 198 (262)
...|.|...--.|.|..++-....+. ....=......+|++-|-+.
T Consensus 73 ~~lP~DrEslf~lnv~eIPp~~~~~~-----~~n~lqia~r~riKlFyRP~ 118 (206)
T 1l4i_A 73 GQMPEDRESLFWVNVKAIPAMDKAKT-----GENYLQFAIVSRIKLLYRPQ 118 (206)
T ss_dssp TCSCSSSCEEEEEEEEEEECCC-------------CCCEEEEEEEEEEECT
T ss_pred CCCCCCceEEEEEEeecCCCCccccc-----CCceEEEEhhheeeEEEecc
Confidence 12244444444455555553222110 00112344678888877654
No 19
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=78.41 E-value=26 Score=30.20 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=61.1
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec-------CCCceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVELPEN 147 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-------aPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~ 147 (262)
|.|+-. -+.|+.... ..+|+|+|.++.++.--.... ...-|.|.|+.-.|+||+...|.|.+ ..
T Consensus 14 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~---~~-- 84 (218)
T 4ay0_A 14 VTIGES-RIIYPLDAA---GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ---AG-- 84 (218)
T ss_dssp EEESCC-EEEEETTCS---CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEE---CS--
T ss_pred EEECce-EEEECCCCc---EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEe---cC--
Confidence 556664 666765332 478999999888765553221 11239999999999999999999987 11
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 024770 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 198 (262)
Q Consensus 148 ~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~p 198 (262)
..-|.|..+ -|-+....+++..+... ..-......+|++-|-+.
T Consensus 85 ~~LP~DRES--lf~lnv~eIPp~~~~~~-----n~lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 85 GVFPRDKES--LKWLCVKGIPPKDEDIW-----VDVQFAINNCIKLLVRPN 128 (218)
T ss_dssp CCCCSSSCE--EEEEEEEEECC-------------------CEEEEEEECT
T ss_pred CCCCcCcEE--EEEEEEEecCCCCcccc-----ceeEEEEEEEEEEEEcCc
Confidence 112333322 35555555554321100 011234567788877654
No 20
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=76.64 E-value=38 Score=29.51 Aligned_cols=105 Identities=11% Similarity=0.167 Sum_probs=61.3
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEE--EeecC----CCceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFK--FQTTA----PKSCFMRPPGAILAPGESLIATVFKFVELPEN 147 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFK--VKTTa----Pk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~ 147 (262)
|.++.. -+.|+.... ..+|+|+|.++. ++.-- |.... ..-|.|-|+.-.|+||+...|.|.+ ...
T Consensus 2 ~~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~~~- 73 (224)
T 3gfu_C 2 LAVDQT-RYIFRGDKD---ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIM---ASD- 73 (224)
T ss_dssp EECSCS-EEEEETTSS---CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEE---CSC-
T ss_pred ccccce-EEEEeCCCc---eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCC-
Confidence 456665 677765433 479999999875 44322 22211 1239999999999999999999986 111
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeC
Q 024770 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLN 197 (262)
Q Consensus 148 ~e~p~~~k~kDKFlVqS~~v~~~~d~~~elfk~~~~~~i~e~kLrVvf~~ 197 (262)
..|.|...- |-+....+++..+ ...=......+|++-|-+
T Consensus 74 -~LP~DRESl--f~lnv~eIPp~~~-------~n~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 74 -HLPKDKESV--YWLNLQDIPPALE-------GSGIAVALRTKLKLFYRP 113 (224)
T ss_dssp -CCCSSSCEE--EEEEEEEECCCCS-------SSBCCEEEEEEEEEEEEC
T ss_pred -CCCCCceEE--EEEEeecCCCCCC-------CCeEEEEEEEEeeEEEcc
Confidence 123444333 4444444443221 111233467777877754
No 21
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=70.34 E-value=35 Score=28.99 Aligned_cols=62 Identities=8% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEeec-----CCCceeecCCceeeCCCCeEEEEEEe
Q 024770 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 75 L~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTT-----aPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
|.|++. -+.|+.... ..+|+|+|.++. ++.--+-.. ...-|.|-|+.-.|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 69 (205)
T 1klf_A 2 VALGAT-RVIYPAGQK---QVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD 69 (205)
T ss_dssp EEESCS-EEEEETTCS---EEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEE
T ss_pred eEecce-EEEEeCCCc---EEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567775 777776533 579999999887 765554221 12349999999999999999999985
No 22
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=69.55 E-value=26 Score=33.23 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCcee----------------------ecCCcee
Q 024770 70 PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF----------------------MRPPGAI 127 (262)
Q Consensus 70 ~~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~----------------------VRPn~Gi 127 (262)
+....+.++-. +-.|.- +++..+-+|+++|.++.+|-..==+|+.-+|. |.|+ .=
T Consensus 245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~p 321 (382)
T 1yew_A 245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SP 321 (382)
T ss_dssp CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SC
T ss_pred CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CC
Confidence 34566777775 666654 58899999999999999999886566665552 2222 23
Q ss_pred eCCCCeEEEEEEe
Q 024770 128 LAPGESLIATVFK 140 (262)
Q Consensus 128 I~Pgesv~I~Vtl 140 (262)
|.|||+.+|.|..
T Consensus 322 I~PGETr~~~v~a 334 (382)
T 1yew_A 322 LAPGETRTVDVTA 334 (382)
T ss_dssp BCTTCEEEEEEEE
T ss_pred cCCCceeEEEEEe
Confidence 8999999999986
No 23
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=67.37 E-value=23 Score=28.65 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=31.3
Q ss_pred CeEEEEEEEEcCCCC-eEEEEEeecCCCceeec--CCce-eeCCCC
Q 024770 91 KQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMR--PPGA-ILAPGE 132 (262)
Q Consensus 91 k~~~s~LtL~N~S~~-~VAFKVKTTaPk~Y~VR--Pn~G-iI~Pge 132 (262)
....-.++.+|.+.. ---|.++.-.|+.|.++ |+.| .|.|+.
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~ 92 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFN 92 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGG
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 446667888998764 56788888889988877 6666 588844
No 24
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=66.95 E-value=13 Score=30.49 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=24.6
Q ss_pred EEEEEcCCCCeEE---EEEeecCCC--ceeecCCceeeCCCCeEEEE
Q 024770 96 AIKIKNTSKSHVA---FKFQTTAPK--SCFMRPPGAILAPGESLIAT 137 (262)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk--~Y~VRPn~GiI~Pgesv~I~ 137 (262)
.|+|.|+++..+. |+++=...+ ..+.=|+.=+|+||++++|-
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIW 85 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEEE
Confidence 6788888776553 344322221 12333555588999987654
No 25
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=64.42 E-value=19 Score=34.55 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred CcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCcee--------------------e-cCCceeeCCC
Q 024770 73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPG 131 (262)
Q Consensus 73 ~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~--------------------V-RPn~GiI~Pg 131 (262)
..+.++-. .-.|.- +++...-+|+++|.++.+|-+.==+|+.-+|. + .|+ -|.||
T Consensus 282 ~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34666664 566654 58899999999999999998885555555543 1 233 59999
Q ss_pred CeEEEEEEe
Q 024770 132 ESLIATVFK 140 (262)
Q Consensus 132 esv~I~Vtl 140 (262)
|+.+|+|..
T Consensus 358 ETrt~~V~a 366 (419)
T 3rfr_A 358 ESKEIVVKI 366 (419)
T ss_dssp CEEEEEEEE
T ss_pred cceEEEEEe
Confidence 999999986
No 26
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=62.77 E-value=21 Score=27.42 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=45.1
Q ss_pred cEEecCCC-ceEeecCCCC-eEEEEEEEEcCCCCeEEEEEeecCCCceee-cCCceeeCCCCeEEEEEEee
Q 024770 74 RLKLDPAN-KLYFPYEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFKF 141 (262)
Q Consensus 74 lL~IdP~~-~L~F~~e~~k-~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~V-RPn~GiI~Pgesv~I~Vtl~ 141 (262)
.|.|-... .|+-.-..|. .-.-.|+|.|.+..+..|.+.-....-+.+ .|..=.|+||+...+.|++.
T Consensus 12 ~l~V~rdR~~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 12 GMSVIRDRNQLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEECSSCCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred EEEEEecCCceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 34444432 4444444443 456799999999999999988876444554 35545788999888888763
No 27
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.37 E-value=19 Score=29.34 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=24.6
Q ss_pred EEEEEcCCCCeEE---EEEeecCCC---ceeecCCceeeCCCCeEEEE
Q 024770 96 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 137 (262)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk---~Y~VRPn~GiI~Pgesv~I~ 137 (262)
.|+|.|.++..+. |+++=...+ .-+.=|+.=+|.||++++|-
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVW 82 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 6778887766553 445433221 22234666688999986544
No 28
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=52.86 E-value=32 Score=30.79 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=34.9
Q ss_pred CCeEEEEEEEEcCCCCeEE-EEEeecCCC----ce--eecCCceeeCCCCeEEEEEEe
Q 024770 90 GKQVRSAIKIKNTSKSHVA-FKFQTTAPK----SC--FMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 90 ~k~~~s~LtL~N~S~~~VA-FKVKTTaPk----~Y--~VRPn~GiI~Pgesv~I~Vtl 140 (262)
+...+-.|.+.|.+..++. |++.-..++ .+ .+.|.-..|+||+.+...|..
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v 124 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNI 124 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEE
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEE
Confidence 3467789999999886654 666444444 34 345666899999986655553
No 29
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=50.90 E-value=16 Score=28.91 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=23.2
Q ss_pred EEEEEEEcCCCCeEEEEEeecCCC-----ceeec
Q 024770 94 RSAIKIKNTSKSHVAFKFQTTAPK-----SCFMR 122 (262)
Q Consensus 94 ~s~LtL~N~S~~~VAFKVKTTaPk-----~Y~VR 122 (262)
.-.|++.......|.||||.+.|= .||=|
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er 73 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 73 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHH
Confidence 568888888888999999998874 36655
No 30
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=48.01 E-value=5.9 Score=37.83 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.7
Q ss_pred CCcEEecCCCceEeecCCCC
Q 024770 72 RRRLKLDPANKLYFPYEAGK 91 (262)
Q Consensus 72 ~~lL~IdP~~~L~F~~e~~k 91 (262)
.+.+.|.|..+++|.-+++.
T Consensus 38 ~~~~~l~~~~e~R~ev~~~~ 57 (460)
T 2npi_A 38 WHKLVIPKGSDWQIDLKAEG 57 (460)
T ss_dssp CEEEECCTTEECCEECCTTC
T ss_pred cEEEEeCCCcEEEEEECCCC
Confidence 46799999999999987763
No 31
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.62 E-value=19 Score=27.62 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=20.4
Q ss_pred CCccccCCcccccccCccccCCcccccchhccCCCCCcEEecCCC
Q 024770 37 SASHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPAN 81 (262)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sll~~~~lL~IdP~~ 81 (262)
+|++|||+.+..-+..++......|.-.-+.+....-.|.++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~d 49 (100)
T 1uh6_A 5 SHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDD 49 (100)
T ss_dssp CCCCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccccccccccccCCCCCCeEEEEEECCCCCEEEEEeCCCC
Confidence 444455555443333333333333444445554444446666653
No 32
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=39.96 E-value=68 Score=25.36 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=40.1
Q ss_pred CCCCeEEEEEEEEcCCC-CeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEe
Q 024770 88 EAGKQVRSAIKIKNTSK-SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 88 e~~k~~~s~LtL~N~S~-~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
..|+.+.-.++++|... .-=+|+|+-...+...-.-..+ |.||++..|.+..
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 35888999999999986 4467888876666655443334 9999999999987
No 33
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=35.98 E-value=48 Score=30.43 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCC
Q 024770 95 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170 (262)
Q Consensus 95 s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~k~kDKFlVqS~~v~~~ 170 (262)
-.|.|+|.|+- -|.++-+.+..|.+.++.=.|+|+++..+.|.. .+. .....-+|-|.-..+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGF-----KQG----IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEE-----CTT----CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEec-----ccc----ccceEEEEEeeeeeecCC
Confidence 57888888775 677778899999999999999999999999987 111 122455777766655443
No 34
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=27.93 E-value=2.1e+02 Score=22.19 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.1
Q ss_pred CeEEEEEEEEcCCCC-eEEEEEeecCCCceeec--CCce-eeCCC
Q 024770 91 KQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMR--PPGA-ILAPG 131 (262)
Q Consensus 91 k~~~s~LtL~N~S~~-~VAFKVKTTaPk~Y~VR--Pn~G-iI~Pg 131 (262)
....-.+...|.+.. ---|.++.-.|+.|.++ |..| .|.|+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~ 75 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGN 75 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTT
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCC
Confidence 356677888899765 44699999999998776 7777 68997
No 35
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=27.21 E-value=36 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=15.9
Q ss_pred ccccchhhHHHHHHHHHHH
Q 024770 235 GEGLVIDEWKERRERYLAR 253 (262)
Q Consensus 235 ~e~~~i~~~~~~r~~~~~~ 253 (262)
.|.=+|-+|+|+|..-|+.
T Consensus 6 ~EpE~Ir~WRE~~~~~i~e 24 (70)
T 1xi4_J 6 SEPESIRKWREEQTERLEA 24 (70)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 4666899999999988875
No 36
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=25.88 E-value=82 Score=24.76 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=26.9
Q ss_pred EEEEEcCCCCeEE---EEEeecCCC---ceeecCCceeeCCCCeEEEE
Q 024770 96 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 137 (262)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk---~Y~VRPn~GiI~Pgesv~I~ 137 (262)
.|+|.|.++..+. |+++-...+ .|.. |+.=+|+||++++|-
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 6888888876664 566544332 3544 555588999997654
No 37
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=24.90 E-value=1.2e+02 Score=25.58 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred ceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEE
Q 024770 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 138 (262)
Q Consensus 82 ~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~V 138 (262)
.|.|....+ .|++.|+|..+|.|-=-+-..+.+ . .+.|.|+++..+.+
T Consensus 130 ~L~~~~~~~-----~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 130 KLRFRRSAN-----SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp GCEECCCSS-----EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred eeEEEEcCC-----EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 677765322 599999999999886322233332 2 37999999887653
No 38
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=24.19 E-value=67 Score=22.25 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEEcCCCCeEEEEEeecCC
Q 024770 96 AIKIKNTSKSHVAFKFQTTAP 116 (262)
Q Consensus 96 ~LtL~N~S~~~VAFKVKTTaP 116 (262)
.|+++..+...|.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 678888888899999998877
No 39
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=23.38 E-value=2.4e+02 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=36.9
Q ss_pred eEEEEEEEEcCCCCeEEEEEeecCCCce--eecCCceee-CCCCeEEEEEEe
Q 024770 92 QVRSAIKIKNTSKSHVAFKFQTTAPKSC--FMRPPGAIL-APGESLIATVFK 140 (262)
Q Consensus 92 ~~~s~LtL~N~S~~~VAFKVKTTaPk~Y--~VRPn~GiI-~Pgesv~I~Vtl 140 (262)
..+-.-+++|.......|++..+.|.-. .|.|..=.+ ..|++..++|++
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 4455668999999899999998888754 456776655 467887777776
No 40
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=23.38 E-value=77 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.9
Q ss_pred ceEeecCCCCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEE
Q 024770 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 139 (262)
Q Consensus 82 ~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vt 139 (262)
.|.|....+ .|+++|+|..+|.|-=-+-..+ .+ ..+.|.|+++..+.+-
T Consensus 140 ~L~~~~~g~-----~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l~ 188 (218)
T 4ay0_A 140 NLSWKVDGG-----KLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDLP 188 (218)
T ss_dssp GCEEEEETT-----EEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC-
T ss_pred ceEEEEeCC-----EEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEECC
Confidence 577776543 5999999999999842222222 23 2489999998776543
No 41
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=23.09 E-value=2.4e+02 Score=21.19 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=36.4
Q ss_pred CCeEEEEEEEEcCCC---CeEEEEEeecCC---CceeecCCceeeCCCCeEEEEEEe
Q 024770 90 GKQVRSAIKIKNTSK---SHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK 140 (262)
Q Consensus 90 ~k~~~s~LtL~N~S~---~~VAFKVKTTaP---k~Y~VRPn~GiI~Pgesv~I~Vtl 140 (262)
++.....++++|+=. ....|-|--..- ..+. .|-|.||+++.+++.+
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEE
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEE
Confidence 778999999999966 467888765433 3333 3679999999999998
No 42
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=22.90 E-value=1.9e+02 Score=22.22 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCCeEEEEEEEEcCCCCe--EEEEEeecCCCceeecCC-ce----eeCCCCeEEEEEEe
Q 024770 89 AGKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-GA----ILAPGESLIATVFK 140 (262)
Q Consensus 89 ~~k~~~s~LtL~N~S~~~--VAFKVKTTaPk~Y~VRPn-~G----iI~Pgesv~I~Vtl 140 (262)
.+......+.|+|.++.+ +.||+-==+..-+-|.|. .. +|.+++++.|.-.-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 456778999999999875 899987777888888875 22 48888888877764
No 43
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=22.60 E-value=2.4e+02 Score=24.10 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=36.1
Q ss_pred cccchhccCCCCCcEEecCCCceEeec-----------CCCC-eEEEEEEEEcCCCCeEEEEEee----cCCCceeecCC
Q 024770 61 VSSVARSLLPKRRRLKLDPANKLYFPY-----------EAGK-QVRSAIKIKNTSKSHVAFKFQT----TAPKSCFMRPP 124 (262)
Q Consensus 61 ~~~~~~sll~~~~lL~IdP~~~L~F~~-----------e~~k-~~~s~LtL~N~S~~~VAFKVKT----TaPk~Y~VRPn 124 (262)
+......++ ...+..++..+...... ..+- -....+-|.|... .|-.--++ +.|+.|. .|.
T Consensus 28 ~~~~q~~~~-~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g-~lLLqrRs~~K~~~pG~W~-~p~ 104 (246)
T 2pny_A 28 VDRRQLQRL-EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKN-RILIQQRSDTKVTFPGYFT-DSC 104 (246)
T ss_dssp SCHHHHHHT-TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTC-CEEEEEECTTCSSSTTCBC-CSE
T ss_pred CCHHHHhhc-cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCC-EEEEEEecCCCCCCCCceE-ecc
Confidence 333333443 55667777776666653 2222 2334556677544 44432222 3455543 477
Q ss_pred ceeeCCC
Q 024770 125 GAILAPG 131 (262)
Q Consensus 125 ~GiI~Pg 131 (262)
+|-+.+|
T Consensus 105 gG~v~~G 111 (246)
T 2pny_A 105 SSHPLYN 111 (246)
T ss_dssp EECCBSS
T ss_pred CceeccC
Confidence 7888888
No 44
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=22.29 E-value=93 Score=24.22 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEeec
Q 024770 70 PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT 114 (262)
Q Consensus 70 ~~~~lL~IdP~~~L~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT 114 (262)
|..-.|.+.|..-=..+.-.+..++..|+|.|+...++..|+|-+
T Consensus 55 PKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kls 99 (122)
T 3zy7_A 55 PKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLT 99 (122)
T ss_dssp CTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEEE
T ss_pred CcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Confidence 345568998875333333235679999999999866555555443
No 45
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=21.92 E-value=2e+02 Score=21.98 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEeecCCCceeecCC------ceeeCCCCeEEEEEEe
Q 024770 90 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP------GAILAPGESLIATVFK 140 (262)
Q Consensus 90 ~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn------~GiI~Pgesv~I~Vtl 140 (262)
+......++++|.++..+.|||.==+..-+-|.+. .=+|.+++++.|.-.-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 44556789999999999999998888888888763 2368888888887763
No 46
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=20.57 E-value=1.2e+02 Score=24.99 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=51.5
Q ss_pred EEEEEEEcCCCCeEEEEEeecCCCceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCCeEEEEEEEeCCC
Q 024770 94 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170 (262)
Q Consensus 94 ~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRPn~GiI~Pgesv~I~Vtl~v~qp~~~e~p~~~k~kDKFlVqS~~v~~~ 170 (262)
.-.+-|.|.|+..+.|=..+-..+.+.+| ..|.|+|+.++-|.=+- . .+...-.+|.||-+....+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~---~-------~eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFT---K-------DVLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEEC---G-------GGGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeC---h-------hHhcCCceEEEEEEEEcCC
Confidence 45778999999999999988777777776 78999999998887653 1 1233467899999988764
No 47
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=20.13 E-value=81 Score=27.51 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=32.4
Q ss_pred CceEeecCCCCeEEEEEEEEcCCCCeEEEE-EeecCCCceeecCCceeeCCCCeEEEE
Q 024770 81 NKLYFPYEAGKQVRSAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIAT 137 (262)
Q Consensus 81 ~~L~F~~e~~k~~~s~LtL~N~S~~~VAFK-VKTTaPk~Y~VRPn~GiI~Pgesv~I~ 137 (262)
..|.|....+ .|++.|+|..+|.|- |+- ..+ .+. ..|.|.|+++..+.
T Consensus 161 ~~L~~~~~g~-----~l~v~NptPyyvtl~~l~~-~g~--~~~-~~~mV~P~s~~~~~ 209 (239)
T 4djm_A 161 GKVEWQRAGN-----RLKGVNPTPFYINLSTLTV-GGK--EVK-EREYIAPFSSREYP 209 (239)
T ss_dssp GGCEEEEETT-----EEEEECCSSSCBCEEEEEE-TTE--ECS-SCCCBCTTCEEEEE
T ss_pred heeEEEEeCC-----EEEEECCCceEEEEEEEEE-CCE--ecc-CceeEcCCcceEEE
Confidence 3677765432 499999999988874 322 222 222 56899999998765
Done!