Query 024771
Match_columns 262
No_of_seqs 180 out of 747
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 1.3E-17 4.6E-22 123.3 0.6 43 173-219 4-46 (63)
2 1gnf_A Transcription factor GA 99.6 3.6E-16 1.2E-20 109.3 4.4 39 175-214 3-41 (46)
3 2vut_I AREA, nitrogen regulato 99.6 2.3E-16 7.8E-21 108.8 2.8 37 177-214 2-38 (43)
4 2kae_A GATA-type transcription 99.6 1.4E-15 4.9E-20 114.7 4.0 44 173-219 5-48 (71)
5 4gat_A Nitrogen regulatory pro 99.5 2.1E-15 7.3E-20 112.3 2.7 40 173-213 6-45 (66)
6 4hc9_A Trans-acting T-cell-spe 99.5 1.6E-15 5.6E-20 122.8 0.7 48 166-214 49-96 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 3.5E-12 1.2E-16 103.2 3.4 38 175-213 4-41 (115)
8 2zjr_Z 50S ribosomal protein L 80.4 0.72 2.5E-05 33.3 1.8 50 131-209 4-53 (60)
9 1dl6_A Transcription factor II 77.4 1.6 5.5E-05 30.8 2.8 41 176-219 11-53 (58)
10 1pft_A TFIIB, PFTFIIBN; N-term 73.2 1.1 3.7E-05 30.2 0.9 40 177-219 6-47 (50)
11 3v2d_5 50S ribosomal protein L 69.2 0.83 2.8E-05 33.0 -0.4 50 131-209 4-53 (60)
12 3cw2_K Translation initiation 61.0 3.7 0.00013 33.9 2.0 31 177-208 104-134 (139)
13 3k7a_M Transcription initiatio 60.3 4.7 0.00016 36.7 2.7 42 176-218 21-64 (345)
14 2d74_B Translation initiation 58.9 4 0.00014 34.2 1.8 31 177-208 105-135 (148)
15 1nee_A EIF-2-beta, probable tr 53.0 3.8 0.00013 33.8 0.8 30 177-207 103-132 (138)
16 2b0o_E UPLC1; arfgap, structur 51.7 6.3 0.00022 34.1 2.0 35 173-209 39-73 (301)
17 1k81_A EIF-2-beta, probable tr 50.1 1.5 5.2E-05 28.5 -1.7 30 178-208 2-31 (36)
18 2iqj_A Stromal membrane-associ 48.3 5.3 0.00018 32.6 0.9 35 174-210 25-59 (134)
19 2yrk_A Zinc finger homeobox pr 47.9 4.9 0.00017 29.0 0.6 20 191-210 6-25 (55)
20 2crr_A Stromal membrane-associ 47.2 6.8 0.00023 32.2 1.4 35 174-210 27-61 (141)
21 3dwd_A ADP-ribosylation factor 44.3 10 0.00034 31.9 2.0 36 173-210 35-70 (147)
22 2crw_A ARF GAP 3, ADP-ribosyla 44.0 9.9 0.00034 31.8 1.9 35 174-210 27-61 (149)
23 2owa_A Arfgap-like finger doma 40.5 13 0.00044 30.6 2.0 35 174-210 34-68 (138)
24 2p57_A GTPase-activating prote 39.8 7 0.00024 32.6 0.4 35 174-210 35-69 (144)
25 2olm_A Nucleoporin-like protei 37.1 11 0.00036 31.0 1.0 35 174-210 23-57 (140)
26 2apo_B Ribosome biogenesis pro 36.3 15 0.00051 26.6 1.6 48 176-242 6-53 (60)
27 2g2k_A EIF-5, eukaryotic trans 31.5 6.8 0.00023 33.5 -1.0 32 177-209 97-130 (170)
28 3cng_A Nudix hydrolase; struct 30.6 13 0.00043 29.9 0.5 30 176-205 3-32 (189)
29 1qyp_A RNA polymerase II; tran 30.4 6.8 0.00023 26.9 -1.0 34 176-209 15-54 (57)
30 2e9h_A EIF-5, eukaryotic trans 28.0 9.9 0.00034 32.1 -0.6 33 177-209 104-137 (157)
31 3jue_A Arfgap with coiled-coil 27.6 25 0.00087 31.8 2.0 33 174-208 43-75 (368)
32 3o47_A ADP-ribosylation factor 25.4 22 0.00076 31.4 1.2 36 173-210 34-69 (329)
33 3lju_X ARF-GAP with dual PH do 23.2 24 0.00083 32.5 1.0 34 174-209 32-65 (386)
34 2yrc_A Protein transport prote 21.2 25 0.00084 25.0 0.5 43 173-218 6-50 (59)
35 4bbr_M Transcription initiatio 20.0 22 0.00074 32.6 -0.0 33 177-210 22-54 (345)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.65 E-value=1.3e-17 Score=123.29 Aligned_cols=43 Identities=35% Similarity=0.814 Sum_probs=37.6
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCC
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP 219 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrp 219 (262)
......|+||++++||+||+||+|+ +|||||||+|++++. +||
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP 46 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRP 46 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCC
Confidence 3456789999999999999999996 999999999998775 455
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.61 E-value=3.6e-16 Score=109.27 Aligned_cols=39 Identities=44% Similarity=0.863 Sum_probs=35.4
Q ss_pred CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771 175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 214 (262)
Q Consensus 175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll 214 (262)
..+.|+||++++||+||+||+|+ +|||||||||++++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 46789999999999999999995 9999999999987654
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.60 E-value=2.3e-16 Score=108.80 Aligned_cols=37 Identities=43% Similarity=0.944 Sum_probs=34.0
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 214 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll 214 (262)
+.|++|++++||+||+||+|+ +|||||||||++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999987654
No 4
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.56 E-value=1.4e-15 Score=114.74 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=33.8
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCC
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRP 219 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrp 219 (262)
......|+||+|++||+||+|+.+..+|||||||||++++. +||
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP 48 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRP 48 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCC
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCC
Confidence 34568999999999999999544444999999999997654 455
No 5
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.53 E-value=2.1e-15 Score=112.27 Aligned_cols=40 Identities=38% Similarity=0.759 Sum_probs=35.8
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 213 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl 213 (262)
....+.|+||++++||+||+||+|. +|||||||||++++.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 3456899999999999999999995 999999999997655
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.51 E-value=1.6e-15 Score=122.75 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=40.3
Q ss_pred CCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC
Q 024771 166 AKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV 214 (262)
Q Consensus 166 ~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll 214 (262)
+++..........|+||+++.||+||+||+| ++|||||||||++++..
T Consensus 49 KKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 49 KRRLSAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CCCCCCCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred cccccccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence 3334444566789999999999999999999 99999999999977654
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.22 E-value=3.5e-12 Score=103.21 Aligned_cols=38 Identities=47% Similarity=1.017 Sum_probs=32.9
Q ss_pred CCcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC
Q 024771 175 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 213 (262)
Q Consensus 175 ~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl 213 (262)
..+.|+||+++.||+||+|++| .+|||||||||+.++.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ 41 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence 4689999999999999999999 8999999999985443
No 8
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=80.43 E-value=0.72 Score=33.26 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=31.9
Q ss_pred cCcccccCCCCCccchhccccCcccccCcCCCccCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771 131 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209 (262)
Q Consensus 131 l~vP~kaRSKR~R~~~r~~~~~p~~~~s~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk 209 (262)
+.||-+..||.+++.++.. |. . .....-.|.+||...- ++.+|-.|| +|+
T Consensus 4 MAVPKrK~Sksrr~~RRsh-----~k------------l--~~p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSH-----HA------------L--TAPNLTECPQCHGKKL---------SHHICPNCG-YYD 53 (60)
T ss_dssp CSCCSSCCCTTHHHHHTTT-----CC------------C--CCCCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred cccCCCCCChHHhhhhccc-----cc------------c--cCCCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence 5688888787766665411 10 0 2334567999997632 379999999 443
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=77.42 E-value=1.6 Score=30.85 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=29.3
Q ss_pred CcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCC--CCCCCC
Q 024771 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL--VPEYRP 219 (262)
Q Consensus 176 ~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rl--lp~yrp 219 (262)
...|.+|+... +-.....| .+.|..||+-+..+.+ -||||.
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~ 53 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT 53 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence 34799998754 44444556 8999999999975544 377774
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.20 E-value=1.1 Score=30.16 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=27.3
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC--CCCCC
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV--PEYRP 219 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll--p~yrp 219 (262)
..|.+|+.. ++-.....| ...|..||+-|....+- |+||.
T Consensus 6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred EeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 469999873 343333345 89999999999765553 67764
No 11
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=69.24 E-value=0.83 Score=33.00 Aligned_cols=50 Identities=32% Similarity=0.497 Sum_probs=30.7
Q ss_pred cCcccccCCCCCccchhccccCcccccCcCCCccCCCCCCcCCCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771 131 LRVPVRARSKLRTRCRRELLNQEAWWGSVHGSVKAAKPVVSKVIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209 (262)
Q Consensus 131 l~vP~kaRSKR~R~~~r~~~~~p~~~~s~~~~~kk~k~~~~~~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk 209 (262)
+.||-+..||.+++.++.. |.. .....-.|.+||...- ++.+|-.|| +|+
T Consensus 4 MAVPKrK~Sksr~~~RRsh-----~kl--------------~~p~l~~c~~cGe~~~---------~H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 4 HPVPKKKTSKARRDARRSH-----HAL--------------TPPTLVPCPECKAMKP---------PHTVCPECG-YYA 53 (60)
T ss_dssp CCCCSSCCCHHHHHHHGGG-----CCC--------------CCCCCEECTTTCCEEC---------TTSCCTTTC-EET
T ss_pred cccCcCcCChhhcchhhcc-----ccc--------------cCCceeECCCCCCeec---------ceEEcCCCC-cCC
Confidence 5678787777665554411 111 1223567999998443 478999999 443
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=60.99 E-value=3.7 Score=33.94 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=21.6
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhhh
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 208 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~y 208 (262)
-.|..|+...|-+=+++..= -.-|+|||-.-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC-----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCCC
Confidence 57999999999999875333 57899999654
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=60.34 E-value=4.7 Score=36.72 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=25.1
Q ss_pred CcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCC--CCCC
Q 024771 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLV--PEYR 218 (262)
Q Consensus 176 ~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rll--p~yr 218 (262)
...|.+|+...+-.-..-..| .+.|..||+-..-..+. ||||
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~~id~~~EwR 64 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDKLVDTRSEWR 64 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCCCCCTTCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccccccCCcccc
Confidence 456888887642232233455 78888888877544443 5554
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=58.90 E-value=4 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=24.9
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhhh
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 208 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~y 208 (262)
-.|..|+...|-+=+++..- -.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 46999999999999875333 57899999764
No 15
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=53.04 E-value=3.8 Score=33.81 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=24.0
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhh
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVR 207 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ 207 (262)
-.|..|+...|-+=+++..= -.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 47999999999999865332 5789999964
No 16
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=51.71 E-value=6.3 Score=34.14 Aligned_cols=35 Identities=26% Similarity=0.616 Sum_probs=28.8
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk 209 (262)
......|+.|+... |.|-.-.-| ..+|-.|--..+
T Consensus 39 ~~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr 73 (301)
T 2b0o_E 39 RPGNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHR 73 (301)
T ss_dssp STTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCCCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHH
Confidence 44578999999965 999999999 999999954444
No 17
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=50.07 E-value=1.5 Score=28.46 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=22.3
Q ss_pred ccccCCCCCCCCcccCCCCCcccchhhhhhh
Q 024771 178 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 208 (262)
Q Consensus 178 ~C~nCgtt~TP~WRrGP~G~~tLCNACGL~y 208 (262)
.|..|+..+|-+=+++..- -.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCcc
Confidence 4899999999988864222 34599999654
No 18
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=48.27 E-value=5.3 Score=32.62 Aligned_cols=35 Identities=20% Similarity=0.586 Sum_probs=29.4
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
...+.|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 25 p~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 25 EDNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred cCCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 4578999999875 999999999 8999999776654
No 19
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=47.92 E-value=4.9 Score=28.96 Aligned_cols=20 Identities=35% Similarity=0.875 Sum_probs=17.2
Q ss_pred ccCCCCCcccchhhhhhhhh
Q 024771 191 RAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 191 RrGP~G~~tLCNACGL~ykk 210 (262)
..+|+||++-|.-||+.|..
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCCccccccCccccc
Confidence 35789999999999999953
No 20
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.25 E-value=6.8 Score=32.23 Aligned_cols=35 Identities=23% Similarity=0.612 Sum_probs=28.9
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
...+.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRN 61 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHH
T ss_pred ccCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhc
Confidence 356899999986 5999998999 8999999766654
No 21
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.30 E-value=10 Score=31.87 Aligned_cols=36 Identities=31% Similarity=0.616 Sum_probs=30.0
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
...++.|++|+... |.|-.=.-| -.+|-.|.-..+.
T Consensus 35 ~p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 35 QDENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp STTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CcCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 34578999999875 999998999 8999999876664
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.99 E-value=9.9 Score=31.75 Aligned_cols=35 Identities=31% Similarity=0.723 Sum_probs=29.3
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
..++.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 456899999975 6999999999 8999999776664
No 23
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=40.49 E-value=13 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.585 Sum_probs=29.6
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
...+.|++|+... |.|-.=.-| -.+|-.|.-..+.
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred cCCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 3568999999865 999999999 8999999877764
No 24
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=39.82 E-value=7 Score=32.61 Aligned_cols=35 Identities=31% Similarity=0.721 Sum_probs=29.3
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
..++.|++|+... |.|-.=.-| -.+|-.|.-..+.
T Consensus 35 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 35 PTNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcC
Confidence 3568999999864 999998899 8999999877764
No 25
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=37.13 E-value=11 Score=31.05 Aligned_cols=35 Identities=23% Similarity=0.610 Sum_probs=29.2
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
..++.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred cCCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 356899999986 6999999999 8999999776654
No 26
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=36.28 E-value=15 Score=26.60 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=30.9
Q ss_pred CcccccCCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCCCCccccccchHHHHHHHH
Q 024771 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRR 242 (262)
Q Consensus 176 ~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yrpa~sPtf~~~~hs~~hrkv~~~Rk 242 (262)
-+.|..|++-+- +..|-.||.... -+..+.|++.-.-..+|..+++|-
T Consensus 6 mr~C~~CgvYTL----------k~~CP~CG~~T~---------~~hParfSp~Dky~~yR~~~kk~~ 53 (60)
T 2apo_B 6 MKKCPKCGLYTL----------KEICPKCGEKTV---------IPKPPKFSLEDRWGKYRRMLKRAL 53 (60)
T ss_dssp CEECTTTCCEES----------SSBCSSSCSBCB---------CCCCCCCCTTCTTHHHHHHHHHHH
T ss_pred ceeCCCCCCEec----------cccCcCCCCcCC---------CCCCCCCCCCcchHHHHHHHHHHh
Confidence 467888876543 566888886653 234456777776677776666554
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.50 E-value=6.8 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.2
Q ss_pred cccccCCCCCCCCcc--cCCCCCcccchhhhhhhh
Q 024771 177 RKCQHCGAEKTPQWR--AGPMGPKTLCNACGVRFK 209 (262)
Q Consensus 177 r~C~nCgtt~TP~WR--rGP~G~~tLCNACGL~yk 209 (262)
-.|..|+...|-+-+ ++..= -.-|+|||-...
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~-~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTI-GNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEE-EEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEE-EEEccccCCccc
Confidence 369999999999988 33222 467999997764
No 28
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=30.65 E-value=13 Score=29.93 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=25.9
Q ss_pred CcccccCCCCCCCCcccCCCCCcccchhhh
Q 024771 176 GRKCQHCGAEKTPQWRAGPMGPKTLCNACG 205 (262)
Q Consensus 176 ~r~C~nCgtt~TP~WRrGP~G~~tLCNACG 205 (262)
.+.|..||+..+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 468999999998877778888788999999
No 29
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.43 E-value=6.8 Score=26.93 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=24.2
Q ss_pred CcccccCCCCC----CCCcccCCCCC--cccchhhhhhhh
Q 024771 176 GRKCQHCGAEK----TPQWRAGPMGP--KTLCNACGVRFK 209 (262)
Q Consensus 176 ~r~C~nCgtt~----TP~WRrGP~G~--~tLCNACGL~yk 209 (262)
...|.+|+-.. +-+||...++. -+.|..||-+|+
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 45799999844 34688776662 258999998875
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=9.9 Score=32.10 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=23.9
Q ss_pred cccccCCCCCCCCccc-CCCCCcccchhhhhhhh
Q 024771 177 RKCQHCGAEKTPQWRA-GPMGPKTLCNACGVRFK 209 (262)
Q Consensus 177 r~C~nCgtt~TP~WRr-GP~G~~tLCNACGL~yk 209 (262)
-.|..|+..+|-+=+. ...---.-|+|||-...
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 4799999999999872 11122467999997653
No 31
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=27.58 E-value=25 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.612 Sum_probs=27.4
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRF 208 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~y 208 (262)
...+.|++|+.. -|.|-.=..| -.+|-.|.-..
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~h 75 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIH 75 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHH
Confidence 457899999985 6999999999 89999996333
No 32
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.36 E-value=22 Score=31.40 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=29.3
Q ss_pred CCCCcccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 173 VIIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 173 ~~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
....+.|++|+.. -|.|-.=.-| -.+|-.|.--.+.
T Consensus 34 ~~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~ 69 (329)
T 3o47_A 34 QDENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRG 69 (329)
T ss_dssp STTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcc
Confidence 3457899999985 5899998899 8999999766654
No 33
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=23.21 E-value=24 Score=32.53 Aligned_cols=34 Identities=26% Similarity=0.717 Sum_probs=28.6
Q ss_pred CCCcccccCCCCCCCCcccCCCCCcccchhhhhhhh
Q 024771 174 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFK 209 (262)
Q Consensus 174 ~~~r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~yk 209 (262)
..++.|++|++. -|.|-.=.-| -.||-.|.-..+
T Consensus 32 ~~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr 65 (386)
T 3lju_X 32 PGNARCADCGAP-DPDWASYTLG-VFICLSCSGIHR 65 (386)
T ss_dssp GGGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred cCCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhh
Confidence 356789999996 7999998899 899999986554
No 34
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.17 E-value=25 Score=24.99 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.5
Q ss_pred CCCCccccc--CCCCCCCCcccCCCCCcccchhhhhhhhhCCCCCCCC
Q 024771 173 VIIGRKCQH--CGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYR 218 (262)
Q Consensus 173 ~~~~r~C~n--Cgtt~TP~WRrGP~G~~tLCNACGL~ykk~rllp~yr 218 (262)
.....+|.. |++---|.++-...|.+..||-|+.+- .+.++|.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N---~~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN---QFPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE---ECCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC---CCCHHHh
Confidence 455678998 999999999988888899999999765 3444554
No 35
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.00 E-value=22 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=19.1
Q ss_pred cccccCCCCCCCCcccCCCCCcccchhhhhhhhh
Q 024771 177 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKS 210 (262)
Q Consensus 177 r~C~nCgtt~TP~WRrGP~G~~tLCNACGL~ykk 210 (262)
..|.+|+...+-.--.-..| .+.|..||+-..-
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~e 54 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEES
T ss_pred CcCCCCCCCCCceeEECCCC-cEEeCCCCCCccC
Confidence 35777776433333333445 6777777776643
Done!