BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024772
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1
Length = 351
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 10/195 (5%)
Query: 72 SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
SF++ + + G G L G LV +KQ + D L + +++ +P L+L L + +
Sbjct: 124 SFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVMPMLLLALLLLLRLA 183
Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
T + L + FG W+YLR+ Q+ + GD +D FAF++FFPE ++PV+ +A+
Sbjct: 184 TLLQSPALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241
Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLA 246
+ H +L ++T D + SLPG+DP +A RRR+ +AL ERL K
Sbjct: 242 LVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRV 298
Query: 247 AAQSVEESKKDAAEN 261
QS+ S D E
Sbjct: 299 EDQSIWPSMDDDEEE 313
>sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1
Length = 350
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 8/193 (4%)
Query: 72 SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
SF++ + + G G L G LV +KQ + D L + +++ +P L+L L + +
Sbjct: 124 SFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLALLLLLRLA 183
Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
T + L + FG W+YLR+ Q+ + GD +D FAF++FFPE ++PV+ +A+
Sbjct: 184 TLLQSPALASYGFGLLSSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241
Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLA-TEKL 245
+ H +L ++T D + SLPG+DP +A RRR+ +AL ERL E
Sbjct: 242 LVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQ 301
Query: 246 AAAQSVEESKKDA 258
+A S+++ +++A
Sbjct: 302 SAWPSMDDDEEEA 314
>sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1
Length = 351
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 10/195 (5%)
Query: 72 SFDVKKFTYMPLSGFQGVLAGFLVGIKQIVPDQE-LYLLKIKAKWLPSLMLLLSIAISFF 130
SF++ + + G G L G LV +KQ + D L + +++ +P L+L L + +
Sbjct: 124 SFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVVLRVPQVRVSVVPMLLLGLLLLLRLA 183
Query: 131 TAESAAYLPTLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIAS 190
T + L + FG W+YLR+ Q+ + GD +D FAF++FFPE ++PV+ +A+
Sbjct: 184 TLLQSPALASYGFGLISSWVYLRFYQRHSRGR--GDMADHFAFATFFPEILQPVVGLLAN 241
Query: 191 IFHRMLC----GRRTETSGDDHGYTLGGASLPGSDPIEASRRRERGARALEERLATEKLA 246
+ H +L ++T D + SLPG+DP +A RRR+ +AL ERL K
Sbjct: 242 LVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERL---KRV 298
Query: 247 AAQSVEESKKDAAEN 261
QSV S D E
Sbjct: 299 EDQSVWPSMDDDEEE 313
>sp|Q12239|YO107_YEAST Uncharacterized membrane protein YOL107W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1
SV=1
Length = 342
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 28/190 (14%)
Query: 81 MPLSGFQGVLAGFLVGIKQIVPDQELYLLK--------IKAKWLPSLMLLLSIAISFFTA 132
+PL G +L GF + +Q++P+ + LK + K LP ++
Sbjct: 152 IPLDGNYTILIGFPIIYRQLLPETTIIHLKTPQFLAKNFRFKLLPIFVMFTMTVTQIIWF 211
Query: 133 ESAAYLPTLIFGTYMGWIYLRYLQKK--------PETK-------LSGDPSDDFAFSSFF 177
A L ++ + W YLR+ QK P T L GD SD F FF
Sbjct: 212 HHFAQLFSIWVTFFASWSYLRFFQKLAPLNCPSLPTTNSQGGQEILVGDASDTFQLIYFF 271
Query: 178 PEFIRPVIDPIAS-IFHRMLCGRRTETSGDDHGYTLGG--ASLPGSDPIEA--SRRRERG 232
P+ I+P++ PI + I++ ++ + D +G A G+ I RRR+
Sbjct: 272 PDLIKPILRPIFNFIYNVVVVKFKVIKPFHDIDIDIGNTIAESRGAKKIMTVEERRRQLA 331
Query: 233 ARALEERLAT 242
+ LEER+
Sbjct: 332 LQVLEERMVN 341
>sp|P47480|TIG_MYCGE Trigger factor OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tig PE=1 SV=1
Length = 444
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 145 TYMGWIYLRYLQKKPET---------KLSGDPSDDFAFSSFFPEFIRPV--IDPIASIFH 193
T+ +++ LQ KP T KL P D+ F SF PE + + S FH
Sbjct: 225 TFPSDYHVKELQSKPVTFEVVLKAIKKLEFTPMDETNFKSFLPEQFQSFTSLKAFKSYFH 284
Query: 194 RMLCGRRTETSGDDHG-----YTLGGASLP----GSDPIEASR-RRERGARALEERLATE 243
+++ ++ ET ++ + L LP +EA+R + + ++A + ++ E
Sbjct: 285 KLMENKKQETILQENNQKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYKIPFE 344
Query: 244 KLAAAQSV------EESKKDAAENV 262
KL +A ++ + + K+A ENV
Sbjct: 345 KLLSASNITLTELQDRNIKEAKENV 369
>sp|A3LW86|M28P1_PICST Probable zinc metalloprotease PICST_46351 (Fragment)
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PICST_46351 PE=3
SV=2
Length = 937
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 27/173 (15%)
Query: 33 QLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSF-DVKKFTYMPLS-GFQGVL 90
Q++ AS+ +L LIP +IPF ++ GY + SF +V KF P+S L
Sbjct: 368 QVVVASILLLVLIPGISIPFL--IIIFGYKKNW----ELSFVNVTKF---PISLAISAAL 418
Query: 91 A-----GFLVGIKQIVPDQELYLLK--IKAKWLPSLMLLLS----IAISFFTAESAAYLP 139
GF+V Q +P+ + L + A +L L+L+ I +S+ L
Sbjct: 419 LNLFTNGFIVPFNQFLPNSSPFALVAILFATFLLLNYLILNGINLIFVSYKIVNHDEKLI 478
Query: 140 TLIFGTYMGWIYLRYLQKKPETKLSGDPSDDFAFSSFFPEFIRPVIDPIASIF 192
++I +++ W+ L Y K + GD S FP + +ASIF
Sbjct: 479 SIIETSFLYWVVLIYSTAKLANNVIGDDH-----SGEFPIIFLCALQAVASIF 526
>sp|A1URU2|ATP6_BARBK ATP synthase subunit a OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=atpB PE=3 SV=1
Length = 252
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 10 LFTGFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVH 67
+F+GF GL + VGG IL ++ +++ L + A + + +LT Y+ VH
Sbjct: 192 VFSGFIVSMVGLGFIGVGGSILPLIMTVAITALEFLVAFLQAYVFTVLTCMYLNDAVH 249
>sp|P22367|MSAS_PENPA 6-methylsalicylic acid synthase OS=Penicillium patulum PE=1 SV=1
Length = 1774
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 31 LVQLLPASVSVLALIPARTIPFAWNLLTAGYIEQTVHGVRPSFDVKKFT 79
+V +P V+ LA +PA + F WNLL I+ TV+G P +K FT
Sbjct: 1276 VVTYIPGEVASLAEVPAASESFTWNLLE--LIKFTVNGSLP---IKVFT 1319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,258,211
Number of Sequences: 539616
Number of extensions: 3979594
Number of successful extensions: 10157
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10127
Number of HSP's gapped (non-prelim): 27
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)