Query 024772
Match_columns 262
No_of_seqs 135 out of 225
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 97.0 0.0011 3.7E-08 55.8 6.6 93 13-106 5-133 (181)
2 2nr9_A Protein GLPG homolog; i 96.6 0.00085 2.9E-08 57.2 2.7 57 14-73 11-70 (196)
3 1g70_B RSG-1.2 peptide; peptid 90.3 0.14 4.7E-06 29.5 1.8 18 219-236 6-23 (26)
4 2kxh_B Peptide of FAR upstream 38.1 16 0.00054 22.2 1.6 13 223-235 11-24 (31)
5 4ffl_A PYLC; amino acid, biosy 35.9 17 0.00058 32.3 2.3 25 218-242 337-361 (363)
6 4aco_A Centromere DNA-binding 35.1 25 0.00084 36.5 3.5 25 141-167 281-305 (956)
7 3c01_A Surface presentation of 29.8 43 0.0015 22.2 2.9 23 221-243 16-38 (48)
8 3bzy_A ESCU; auto cleavage pro 23.7 63 0.0022 22.0 2.9 23 221-243 22-44 (54)
9 3ha4_A MIX1; TPR-like, helix-t 19.4 36 0.0012 27.0 1.1 28 212-241 10-42 (154)
10 1zza_A Stannin, AG8_1; helix, 18.5 45 0.0015 24.4 1.4 9 147-155 33-41 (90)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=97.04 E-value=0.0011 Score=55.81 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=60.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhcceeEeecCcccc-chhHHHHHHhhccccceEEeec--------------c---
Q 024772 13 GFTKLCKGLAVVLVGGHILVQLLPASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF--------------D--- 74 (262)
Q Consensus 13 ~~tr~~k~i~~vl~~~~~Ls~~~~~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~--------------g--- 74 (262)
.+|+.+..+|+++++...+.- .+....++++.|..... .+|+++|+.|+|.+++++++|+ |
T Consensus 5 pvt~~li~~~v~vf~~~~~~~-~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~ 83 (181)
T 2xov_A 5 PVTWVMMIACVVVFIAMQILG-DQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGK 83 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhC-cHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 356666666666554443321 11245677888874433 7999999999999999999888 1
Q ss_pred ------------cc-eeeee--eccchHHHHHHHHHHh---hhhcCCcee
Q 024772 75 ------------VK-KFTYM--PLSGFQGVLAGFLVGI---KQIVPDQEL 106 (262)
Q Consensus 75 ------------~~-~~l~~--~i~G~~~~~~g~lVA~---kQl~Pd~~v 106 (262)
+- .+++. +..|.+|.+.|++.++ ....|+.++
T Consensus 84 fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~ 133 (181)
T 2xov_A 84 LIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI 133 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCcee
Confidence 11 11111 3569999999988765 356677764
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=96.62 E-value=0.00085 Score=57.24 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh--hhcceeEeecCcccc-chhHHHHHHhhccccceEEeec
Q 024772 14 FTKLCKGLAVVLVGGHILVQLLP--ASVSVLALIPARTIP-FAWNLLTAGYIEQTVHGVRPSF 73 (262)
Q Consensus 14 ~tr~~k~i~~vl~~~~~Ls~~~~--~~~~~L~liP~~~~~-~pWtl~T~~fvE~~i~~~i~s~ 73 (262)
+|+.+..+|+++ |++....+ ....++++.|..... .+|+++|+.|+|.+++++++|+
T Consensus 11 vt~~li~~~v~v---fll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm 70 (196)
T 2nr9_A 11 ITLILTALCVLI---YIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL 70 (196)
T ss_dssp HHHHHHHHHHHH---HHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHH
Confidence 555555555544 44443333 245678888876543 7999999999999999999888
No 3
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=90.32 E-value=0.14 Score=29.50 Aligned_cols=18 Identities=56% Similarity=0.733 Sum_probs=14.0
Q ss_pred CCCchhhhHHHHHHHHHH
Q 024772 219 GSDPIEASRRRERGARAL 236 (262)
Q Consensus 219 g~~~~eAERRR~~ALkaL 236 (262)
|+.|.-|||||..|..|.
T Consensus 6 gsrpsgaerrrrraaaa~ 23 (26)
T 1g70_B 6 GSRPSGAERRRRRAAAAX 23 (26)
T ss_pred CCCCchHHHHHHHHHhhh
Confidence 566778999998887664
No 4
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=38.09 E-value=16 Score=22.20 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=9.9
Q ss_pred hhh-hHHHHHHHHH
Q 024772 223 IEA-SRRRERGARA 235 (262)
Q Consensus 223 ~eA-ERRR~~ALka 235 (262)
+|| +|=||+|.|.
T Consensus 11 adA~~RaRQIaAKi 24 (31)
T 2kxh_B 11 KDALQRARQIAAKI 24 (31)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 344 8999999873
No 5
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=35.94 E-value=17 Score=32.31 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHhc
Q 024772 218 PGSDPIEASRRRERGARALEERLAT 242 (262)
Q Consensus 218 pg~~~~eAERRR~~ALkaL~eRL~~ 242 (262)
-|.+++||.+|.+.||+.+++|+.+
T Consensus 337 ~G~~~~eA~~k~~~al~~i~~~~g~ 361 (363)
T 4ffl_A 337 WGKDREETGAKRCKGLSVLKERFGA 361 (363)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCHHHHHHHHHHHHHHHHHHhcc
Confidence 3779999999999999999999873
No 6
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=35.07 E-value=25 Score=36.46 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCcccCCC
Q 024772 141 LIFGTYMGWIYLRYLQKKPETKLSGDP 167 (262)
Q Consensus 141 ~~~G~~~sW~YLRF~Q~~p~~~~rGD~ 167 (262)
+-.+.+.+|.|||||--. +..|||.
T Consensus 281 CPi~tLA~YlfLRFygvk--~vykGdG 305 (956)
T 4aco_A 281 CPQTTLAAYLYLRFYGIP--SVSKGDG 305 (956)
T ss_dssp CHHHHHHHHHHHHHHCBT--TTBCCCC
T ss_pred cchHHHHHHHHHHHhccc--ccccCCC
Confidence 446788899999999764 4568886
No 7
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=29.80 E-value=43 Score=22.20 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred CchhhhHHHHHHHHHHHHHHhcc
Q 024772 221 DPIEASRRRERGARALEERLATE 243 (262)
Q Consensus 221 ~~~eAERRR~~ALkaL~eRL~~~ 243 (262)
||.--.|||+++-....+|+.++
T Consensus 16 dP~iK~~~R~~~~e~a~~~m~~~ 38 (48)
T 3c01_A 16 NPEVKSKRREVHMEILSEQVKSD 38 (48)
T ss_pred CHHHHHHHHHHHHHHHHhHHHhc
Confidence 88888999999999999999743
No 8
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=23.70 E-value=63 Score=21.95 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhcc
Q 024772 221 DPIEASRRRERGARALEERLATE 243 (262)
Q Consensus 221 ~~~eAERRR~~ALkaL~eRL~~~ 243 (262)
||.--.|||+++-.....|+.++
T Consensus 22 dP~iK~r~R~~~re~a~~~m~~~ 44 (54)
T 3bzy_A 22 NPEIKGERRRLHSEIQSGSLANN 44 (54)
T ss_pred CHHHHHHHHHHHHHHHHhHHHhc
Confidence 88888999999999999999643
No 9
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=19.44 E-value=36 Score=27.04 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=14.2
Q ss_pred ccCCCCCCCCchhhhHHHHHH-----HHHHHHHHh
Q 024772 212 LGGASLPGSDPIEASRRRERG-----ARALEERLA 241 (262)
Q Consensus 212 ~~~~~lpg~~~~eAERRR~~A-----LkaL~eRL~ 241 (262)
.|.+.+| +.-||||||.-- --.|.||.-
T Consensus 10 agp~~lp--deleae~rrrndprrppwpllhqr~v 42 (154)
T 3ha4_A 10 AGPIELP--EELEAQRQRHNDPRRPPWPLLHQRVV 42 (154)
T ss_dssp ---------CCHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred CCCccCc--HHHHHHHHhhCCCCCCCchhhhhhhh
Confidence 3456777 788999988643 245667653
No 10
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=18.46 E-value=45 Score=24.36 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=7.2
Q ss_pred HHHHHHhhh
Q 024772 147 MGWIYLRYL 155 (262)
Q Consensus 147 ~sW~YLRF~ 155 (262)
.+|+|||.=
T Consensus 33 gcwcylrlq 41 (90)
T 1zza_A 33 GCWCYLRLQ 41 (90)
T ss_dssp HHHTTTSSC
T ss_pred HHHHHHHHH
Confidence 489999953
Done!