BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024773
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109
PKV T E+G N K + L K+ D + E+ L +H G D +W+ +T
Sbjct: 2 PKVTFTVEKGSNEKHLAVLVKYEGDTMAEVELREH--GSD--------------EWVAMT 45
Query: 110 SPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK 161
E G ++ + P N R + G ++F++V+ K ++ ++P +
Sbjct: 46 KGEGGVWTFDSEEPLQGPFNFRF-LTEKGMKNVFDDVV-PEKYTIGATYAPEE 96
>pdb|2V8O|A Chain A, Structure Of The Murray Valley Encephalitis Virus Rna
Helicase To 1.9a Resolution
Length = 444
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 180 TVLYPASAKASNEIEEGLSNRGFEVVRLN--TYTTE 213
TV + AS K SNEI + L G V++LN +Y TE
Sbjct: 184 TVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTE 219
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 180 TVLYPASAKASNEIEEGLSNRGFEVVRLN--TYTTE 213
TV + AS K SNEI + L G V++LN +Y TE
Sbjct: 413 TVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTE 448
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATG 164
T+P + F+E ++AG P I V A + + ++ K SL + F+ SK G
Sbjct: 210 TTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSL-ITFTGSKDVG 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,413,104
Number of Sequences: 62578
Number of extensions: 231430
Number of successful extensions: 562
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 12
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)