BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024773
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48721|HEM4_ARATH Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis
thaliana GN=UROS PE=2 SV=2
Length = 321
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/211 (70%), Positives = 175/211 (82%), Gaps = 1/211 (0%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110
P+VVVTRERGKN ++IKAL K+ I LELPLIQHA+GPD DRL+SVLN D FDWIIITS
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLN-DKSFDWIIITS 123
Query: 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170
PEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASE
Sbjct: 124 PEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASE 183
Query: 171 LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIP 230
LP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L+QALS P
Sbjct: 184 LPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAP 243
Query: 231 VVAVASPSAVRSWVNLISDTEQWSNSVACIA 261
V++VASPSAVR+W++LI + EQWSN VACI
Sbjct: 244 VLSVASPSAVRAWLHLIQNEEQWSNYVACIG 274
>sp|Q10QR9|HEM4_ORYSJ Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp.
japonica GN=UROS PE=2 SV=1
Length = 302
Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/218 (66%), Positives = 166/218 (76%), Gaps = 1/218 (0%)
Query: 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103
A +S P VVVTRERGKN KLI AL KH + LELPLI+H +GPDTDRLS+VL D F
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLR-DEKF 98
Query: 104 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT 163
DWI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA
Sbjct: 99 DWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAM 158
Query: 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223
GK LASELP+ + C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +L
Sbjct: 159 GKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLIL 218
Query: 224 KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261
K ALS PVVAVASPSA+R+W+NL S + W N++ACI
Sbjct: 219 KPALSAPVVAVASPSALRAWLNLASQVDNWGNAIACIG 256
>sp|Q59294|HEM4_CLOJO Porphyrin biosynthesis protein HemD OS=Clostridium josui GN=hemD
PE=3 SV=1
Length = 504
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 13/217 (5%)
Query: 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111
K++VTR + +G L++ L + + +E P I+ P ++L + WI++TS
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSK 314
Query: 112 EAGSVFLEAWKEAGTP-----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKI 166
+F + G N +IG VG+ TA +EV L F+P G+
Sbjct: 315 NGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRH 368
Query: 167 LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA 226
LA + + + VL +A AS++I L + + R+ Y T ++ V K
Sbjct: 369 LALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKKSI 428
Query: 227 L--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261
+ + + S S V ++ + D S + CI
Sbjct: 429 VHGELKYITFTSASTVEGFIASMKDIPLESLTAVCIG 465
>sp|B5R6T2|PHNW_SALG2 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=phnW PE=3
SV=1
Length = 367
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5QTH9|PHNW_SALEP 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
enteritidis PT4 (strain P125109) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5FKT6|PHNW_SALDC 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella dublin
(strain CT_02021853) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,431,160
Number of Sequences: 539616
Number of extensions: 3656960
Number of successful extensions: 8237
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8231
Number of HSP's gapped (non-prelim): 11
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)