Query 024773
Match_columns 262
No_of_seqs 185 out of 1441
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 1.2E-41 4E-46 296.9 20.7 211 46-262 2-221 (254)
2 3re1_A Uroporphyrinogen-III sy 100.0 2.5E-41 8.4E-46 297.6 14.8 211 46-262 10-229 (269)
3 3d8t_A Uroporphyrinogen-III sy 100.0 4.6E-41 1.6E-45 298.2 16.5 214 28-262 19-248 (286)
4 3mw8_A Uroporphyrinogen-III sy 100.0 3.6E-40 1.2E-44 285.1 19.0 203 50-262 1-209 (240)
5 1jr2_A Uroporphyrinogen-III sy 100.0 8.9E-39 3E-43 283.4 19.8 211 44-262 15-247 (286)
6 1wcw_A Uroporphyrinogen III sy 100.0 7.4E-39 2.5E-43 279.8 18.4 204 46-262 4-223 (261)
7 3p9z_A Uroporphyrinogen III co 100.0 4.3E-32 1.5E-36 233.3 14.1 171 75-262 17-193 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 1.5E-17 5.1E-22 142.5 13.2 118 48-175 108-225 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.7 1.1E-17 3.8E-22 147.7 11.9 122 48-175 155-280 (286)
10 3re1_A Uroporphyrinogen-III sy 99.7 1.4E-17 4.7E-22 145.9 10.2 123 47-176 138-263 (269)
11 4es6_A Uroporphyrinogen-III sy 99.7 3.3E-17 1.1E-21 142.1 11.8 120 47-173 130-252 (254)
12 1wcw_A Uroporphyrinogen III sy 99.7 3.9E-17 1.3E-21 142.0 8.7 118 50-174 130-255 (261)
13 3d8t_A Uroporphyrinogen-III sy 99.7 9.2E-17 3.2E-21 141.8 10.8 118 50-174 155-280 (286)
14 3mw8_A Uroporphyrinogen-III sy 99.7 8.6E-17 3E-21 138.3 9.5 119 47-172 117-239 (240)
15 3qk7_A Transcriptional regulat 96.7 0.0061 2.1E-07 52.3 9.2 178 64-261 31-223 (294)
16 3gv0_A Transcriptional regulat 96.7 0.0073 2.5E-07 51.6 9.3 179 64-261 31-224 (288)
17 3gbv_A Putative LACI-family tr 96.5 0.031 1.1E-06 47.5 12.1 182 64-261 30-232 (304)
18 3egc_A Putative ribose operon 96.5 0.016 5.5E-07 49.4 9.9 177 64-261 29-222 (291)
19 3l49_A ABC sugar (ribose) tran 96.5 0.028 9.6E-07 47.6 11.4 192 50-261 5-224 (291)
20 3g1w_A Sugar ABC transporter; 96.3 0.016 5.5E-07 49.6 9.1 194 50-261 4-221 (305)
21 2fep_A Catabolite control prot 96.2 0.038 1.3E-06 47.1 10.6 177 64-261 37-231 (289)
22 3d8u_A PURR transcriptional re 96.1 0.03 1E-06 47.0 9.7 177 64-261 24-217 (275)
23 3k4h_A Putative transcriptiona 96.0 0.022 7.6E-07 48.3 8.5 178 64-261 34-228 (292)
24 3k9c_A Transcriptional regulat 96.0 0.034 1.2E-06 47.4 9.7 176 64-261 32-221 (289)
25 3g85_A Transcriptional regulat 96.0 0.056 1.9E-06 45.7 11.0 177 64-261 33-224 (289)
26 3brq_A HTH-type transcriptiona 96.0 0.049 1.7E-06 46.0 10.3 178 64-261 42-236 (296)
27 3rot_A ABC sugar transporter, 95.8 0.038 1.3E-06 47.2 9.0 196 50-261 3-225 (297)
28 3bbl_A Regulatory protein of L 95.7 0.066 2.3E-06 45.4 10.2 179 64-261 29-224 (287)
29 3dbi_A Sugar-binding transcrip 95.6 0.1 3.5E-06 45.4 11.3 177 64-261 84-278 (338)
30 3c3k_A Alanine racemase; struc 95.6 0.17 5.9E-06 42.7 12.3 171 65-260 30-219 (285)
31 2rgy_A Transcriptional regulat 95.6 0.041 1.4E-06 46.8 8.4 178 64-261 29-225 (290)
32 3h75_A Periplasmic sugar-bindi 95.5 0.061 2.1E-06 47.1 9.4 188 65-261 26-241 (350)
33 3ksm_A ABC-type sugar transpor 95.5 0.051 1.8E-06 45.4 8.4 179 63-261 20-221 (276)
34 3clk_A Transcription regulator 95.5 0.17 5.7E-06 42.9 11.8 178 64-261 29-221 (290)
35 3kke_A LACI family transcripti 95.4 0.12 4.1E-06 44.2 10.7 175 64-261 36-233 (303)
36 2o20_A Catabolite control prot 95.4 0.13 4.5E-06 44.7 11.0 176 65-261 85-275 (332)
37 3d4o_A Dipicolinate synthase s 95.4 0.036 1.2E-06 48.1 7.2 174 48-238 3-223 (293)
38 3e3m_A Transcriptional regulat 95.3 0.13 4.4E-06 45.2 10.8 177 64-261 91-286 (355)
39 3huu_A Transcription regulator 95.3 0.041 1.4E-06 47.2 7.2 174 64-261 48-238 (305)
40 1dbq_A Purine repressor; trans 95.2 0.089 3E-06 44.4 9.2 178 65-261 29-223 (289)
41 3gyb_A Transcriptional regulat 95.1 0.062 2.1E-06 45.2 7.9 174 64-261 26-212 (280)
42 3tb6_A Arabinose metabolism tr 95.0 0.096 3.3E-06 44.2 8.7 177 64-261 36-237 (298)
43 2fvy_A D-galactose-binding per 95.0 0.68 2.3E-05 39.1 14.2 182 64-260 23-235 (309)
44 3o74_A Fructose transport syst 94.9 0.15 5E-06 42.6 9.6 175 64-261 23-215 (272)
45 3lft_A Uncharacterized protein 94.7 0.42 1.4E-05 40.7 12.0 182 64-259 22-218 (295)
46 3kjx_A Transcriptional regulat 94.7 0.064 2.2E-06 46.9 6.8 176 64-260 89-282 (344)
47 2hsg_A Glucose-resistance amyl 94.6 0.068 2.3E-06 46.4 6.9 176 65-261 82-275 (332)
48 3jvd_A Transcriptional regulat 94.4 0.2 6.8E-06 43.7 9.4 182 51-261 65-267 (333)
49 2h0a_A TTHA0807, transcription 94.3 0.12 4.1E-06 43.3 7.6 177 64-261 20-216 (276)
50 3hcw_A Maltose operon transcri 94.3 0.1 3.5E-06 44.5 7.2 175 64-261 33-228 (295)
51 2rir_A Dipicolinate synthase, 94.3 0.036 1.2E-06 48.3 4.3 177 47-238 4-225 (300)
52 3l6u_A ABC-type sugar transpor 94.2 0.27 9.1E-06 41.4 9.7 178 64-261 29-228 (293)
53 2qh8_A Uncharacterized protein 94.2 0.82 2.8E-05 39.0 12.8 164 64-241 28-206 (302)
54 1qpz_A PURA, protein (purine n 94.1 0.25 8.7E-06 42.9 9.5 178 65-261 80-274 (340)
55 2h3h_A Sugar ABC transporter, 94.1 0.17 5.8E-06 43.4 8.2 178 65-261 22-216 (313)
56 3jy6_A Transcriptional regulat 94.0 0.84 2.9E-05 38.1 12.3 190 50-261 7-217 (276)
57 3hs3_A Ribose operon repressor 93.7 0.15 5.1E-06 43.0 7.1 165 64-260 31-213 (277)
58 2x7x_A Sensor protein; transfe 93.5 0.78 2.7E-05 39.5 11.5 146 101-261 61-222 (325)
59 3m9w_A D-xylose-binding peripl 93.5 0.81 2.8E-05 39.0 11.5 178 63-260 22-221 (313)
60 2dri_A D-ribose-binding protei 93.2 0.43 1.5E-05 39.9 9.1 176 65-260 23-214 (271)
61 3cs3_A Sugar-binding transcrip 93.2 0.32 1.1E-05 40.8 8.2 168 64-260 29-212 (277)
62 3e61_A Putative transcriptiona 93.2 1 3.6E-05 37.4 11.5 172 63-260 28-212 (277)
63 2vk2_A YTFQ, ABC transporter p 93.2 0.32 1.1E-05 41.5 8.3 181 65-261 24-227 (306)
64 2ioy_A Periplasmic sugar-bindi 92.7 0.91 3.1E-05 38.1 10.5 175 65-261 23-216 (283)
65 2iks_A DNA-binding transcripti 92.6 0.67 2.3E-05 39.1 9.5 174 65-261 42-233 (293)
66 4fe7_A Xylose operon regulator 92.4 0.63 2.2E-05 41.8 9.6 174 65-261 46-239 (412)
67 3bil_A Probable LACI-family tr 92.2 1.8 6E-05 37.7 12.1 174 65-261 88-277 (348)
68 1gud_A ALBP, D-allose-binding 91.9 3.3 0.00011 34.6 13.1 183 65-261 23-227 (288)
69 3k5p_A D-3-phosphoglycerate de 91.9 1.7 5.7E-05 39.8 11.6 169 46-239 11-219 (416)
70 2yxb_A Coenzyme B12-dependent 91.8 1.9 6.7E-05 33.8 10.6 110 49-171 17-139 (161)
71 3h5o_A Transcriptional regulat 91.6 0.71 2.4E-05 40.0 8.7 175 64-260 83-274 (339)
72 1ccw_A Protein (glutamate muta 91.4 2.2 7.4E-05 32.5 10.3 111 50-173 3-132 (137)
73 2g1u_A Hypothetical protein TM 91.3 0.73 2.5E-05 35.4 7.6 119 45-172 14-150 (155)
74 2qu7_A Putative transcriptiona 91.2 0.2 6.7E-06 42.3 4.5 174 65-261 29-223 (288)
75 3miz_A Putative transcriptiona 90.7 0.17 5.9E-06 43.0 3.7 176 64-260 35-232 (301)
76 2rjo_A Twin-arginine transloca 90.7 0.86 2.9E-05 39.3 8.2 183 64-260 26-230 (332)
77 3llv_A Exopolyphosphatase-rela 90.6 2.6 8.7E-05 31.5 10.0 116 49-172 5-136 (141)
78 3h5t_A Transcriptional regulat 90.4 0.24 8.3E-06 43.6 4.4 146 100-261 126-304 (366)
79 2hmt_A YUAA protein; RCK, KTN, 90.3 1.2 4.2E-05 32.9 7.9 115 48-172 4-137 (144)
80 1lss_A TRK system potassium up 90.3 3.8 0.00013 30.0 10.6 114 50-171 4-134 (140)
81 3d02_A Putative LACI-type tran 90.2 0.93 3.2E-05 38.2 7.9 180 65-261 26-223 (303)
82 3brs_A Periplasmic binding pro 90.0 0.37 1.3E-05 40.5 5.2 178 65-261 29-224 (289)
83 1jye_A Lactose operon represso 89.9 0.93 3.2E-05 39.5 7.8 173 65-260 83-273 (349)
84 2hqb_A Transcriptional activat 89.8 3 0.0001 35.5 10.9 168 64-250 28-203 (296)
85 2fn9_A Ribose ABC transporter, 89.8 1.7 5.9E-05 36.3 9.2 176 65-260 24-223 (290)
86 3c85_A Putative glutathione-re 89.0 2.2 7.5E-05 33.5 8.8 118 46-172 35-172 (183)
87 3fwz_A Inner membrane protein 88.5 3.6 0.00012 30.8 9.4 114 50-171 7-137 (140)
88 1id1_A Putative potassium chan 88.3 6.8 0.00023 29.6 11.1 115 49-172 2-138 (153)
89 1jx6_A LUXP protein; protein-l 87.5 1.1 3.7E-05 38.7 6.5 185 64-260 65-266 (342)
90 4eyg_A Twin-arginine transloca 87.0 6.7 0.00023 33.7 11.5 147 101-260 71-229 (368)
91 1tjy_A Sugar transport protein 85.6 1.8 6.1E-05 37.1 6.8 176 65-260 25-221 (316)
92 1mio_B Nitrogenase molybdenum 85.2 6.6 0.00023 36.0 10.9 140 62-210 184-344 (458)
93 4evq_A Putative ABC transporte 84.7 18 0.00062 31.0 15.8 147 101-259 81-237 (375)
94 3pk0_A Short-chain dehydrogena 83.3 6.1 0.00021 32.9 9.1 151 46-209 6-191 (262)
95 3o1i_D Periplasmic protein TOR 83.3 1.2 4E-05 37.5 4.6 173 64-252 26-217 (304)
96 4g81_D Putative hexonate dehyd 83.3 7.8 0.00027 32.7 9.7 150 47-209 6-189 (255)
97 1byk_A Protein (trehalose oper 83.1 11 0.00039 30.4 10.6 167 64-261 23-205 (255)
98 3hut_A Putative branched-chain 82.8 9 0.00031 32.8 10.3 144 100-258 70-224 (358)
99 3td9_A Branched chain amino ac 82.8 22 0.00074 30.4 13.0 144 101-258 80-234 (366)
100 2q62_A ARSH; alpha/beta, flavo 82.5 5.1 0.00018 33.6 8.2 83 179-261 35-143 (247)
101 2wm8_A MDP-1, magnesium-depend 82.2 4.9 0.00017 31.4 7.6 105 59-174 70-179 (187)
102 2pln_A HP1043, response regula 82.1 12 0.00041 26.9 11.0 110 46-174 14-130 (137)
103 2fzv_A Putative arsenical resi 81.9 3.7 0.00013 35.3 7.2 83 179-261 59-168 (279)
104 4g2n_A D-isomer specific 2-hyd 81.7 20 0.00067 31.7 12.1 182 28-239 13-238 (345)
105 4gx0_A TRKA domain protein; me 81.7 11 0.00038 35.2 11.1 114 49-172 126-257 (565)
106 2fqx_A Membrane lipoprotein TM 80.7 7.3 0.00025 33.4 8.8 166 64-249 28-209 (318)
107 4imr_A 3-oxoacyl-(acyl-carrier 80.6 2.5 8.5E-05 35.8 5.6 103 27-135 12-118 (275)
108 2amj_A Modulator of drug activ 80.5 2.5 8.7E-05 34.3 5.4 65 179-247 13-96 (204)
109 3d64_A Adenosylhomocysteinase; 80.4 22 0.00074 33.1 12.3 35 45-79 70-105 (494)
110 3snr_A Extracellular ligand-bi 80.1 17 0.00058 30.8 11.0 135 101-251 68-214 (362)
111 1sqs_A Conserved hypothetical 79.9 6.5 0.00022 32.4 7.9 69 192-260 23-122 (242)
112 3nrc_A Enoyl-[acyl-carrier-pro 79.5 12 0.00042 31.2 9.7 84 47-135 23-112 (280)
113 3lkv_A Uncharacterized conserv 79.4 22 0.00074 30.1 11.4 193 51-259 9-225 (302)
114 3rih_A Short chain dehydrogena 79.4 12 0.00041 31.8 9.7 74 46-123 37-115 (293)
115 3i1j_A Oxidoreductase, short c 78.5 5.6 0.00019 32.5 7.1 86 46-135 10-103 (247)
116 3f2v_A General stress protein 78.2 2.1 7.3E-05 34.6 4.2 69 180-248 3-85 (192)
117 3h7a_A Short chain dehydrogena 78.2 4 0.00014 33.9 6.1 146 46-204 3-180 (252)
118 3hdv_A Response regulator; PSI 78.1 16 0.00055 26.1 11.4 110 49-174 6-124 (136)
119 4dik_A Flavoprotein; TM0755, e 77.9 4.4 0.00015 36.7 6.7 98 162-261 246-359 (410)
120 1pea_A Amidase operon; gene re 77.8 6.9 0.00024 34.1 7.9 138 101-251 74-221 (385)
121 3ctp_A Periplasmic binding pro 77.7 31 0.001 29.2 11.9 168 65-260 82-266 (330)
122 3eod_A Protein HNR; response r 77.5 16 0.00056 25.8 11.5 111 46-174 3-123 (130)
123 2vzf_A NADH-dependent FMN redu 77.4 3.4 0.00012 33.0 5.3 69 193-261 25-109 (197)
124 3rht_A (gatase1)-like protein; 77.4 4.4 0.00015 34.5 6.1 74 50-136 4-87 (259)
125 1t0i_A YLR011WP; FMN binding p 77.3 11 0.00037 29.6 8.3 38 222-260 78-122 (191)
126 3uug_A Multiple sugar-binding 77.3 5.1 0.00017 34.0 6.7 169 64-251 24-227 (330)
127 3l4b_C TRKA K+ channel protien 77.2 12 0.00042 30.0 8.7 114 51-172 1-132 (218)
128 3tl3_A Short-chain type dehydr 77.2 3.7 0.00013 34.0 5.6 81 46-135 5-88 (257)
129 1y80_A Predicted cobalamin bin 77.1 12 0.0004 30.3 8.5 90 50-145 88-188 (210)
130 2cuk_A Glycerate dehydrogenase 77.1 7.1 0.00024 33.9 7.6 165 51-239 1-204 (311)
131 3tzq_B Short-chain type dehydr 76.9 7.7 0.00026 32.4 7.6 151 44-209 5-189 (271)
132 3gt7_A Sensor protein; structu 76.6 20 0.0007 26.4 11.7 109 49-174 6-124 (154)
133 2yxb_A Coenzyme B12-dependent 76.6 10 0.00036 29.5 7.8 79 178-262 18-108 (161)
134 2xij_A Methylmalonyl-COA mutas 76.6 28 0.00095 34.2 12.2 111 50-173 604-727 (762)
135 5nul_A Flavodoxin; electron tr 75.5 1.9 6.6E-05 32.2 3.1 61 63-135 17-86 (138)
136 2i2x_B MTAC, methyltransferase 75.4 24 0.00083 29.5 10.3 110 50-172 123-242 (258)
137 3jtm_A Formate dehydrogenase, 74.8 12 0.00042 33.1 8.6 154 63-238 30-230 (351)
138 1e5d_A Rubredoxin\:oxygen oxid 74.6 25 0.00086 30.8 10.8 79 178-261 252-343 (402)
139 3k1y_A Oxidoreductase; structu 74.5 7.7 0.00026 31.2 6.6 82 179-260 12-124 (191)
140 3o38_A Short chain dehydrogena 74.2 11 0.00038 31.1 7.9 86 46-135 18-110 (266)
141 2ohh_A Type A flavoprotein FPR 73.9 15 0.00052 32.3 9.1 79 178-261 256-350 (404)
142 1rtt_A Conserved hypothetical 73.2 9.7 0.00033 30.0 6.9 82 179-261 7-115 (193)
143 1xg5_A ARPG836; short chain de 73.1 22 0.00075 29.5 9.5 84 48-135 30-120 (279)
144 3ipc_A ABC transporter, substr 73.1 32 0.0011 29.1 10.8 138 101-251 68-217 (356)
145 1j4a_A D-LDH, D-lactate dehydr 72.9 26 0.00089 30.5 10.2 167 51-239 2-210 (333)
146 3aek_A Light-independent proto 72.5 2.4 8.2E-05 38.8 3.4 141 51-209 184-339 (437)
147 3n0w_A ABC branched chain amin 72.4 28 0.00096 30.0 10.4 138 101-251 72-221 (379)
148 1t5b_A Acyl carrier protein ph 72.1 21 0.00073 27.8 8.8 57 192-248 24-113 (201)
149 4dik_A Flavoprotein; TM0755, e 71.8 8.1 0.00028 35.0 6.8 71 62-136 283-360 (410)
150 1usg_A Leucine-specific bindin 71.8 43 0.0015 28.1 11.3 138 101-251 68-217 (346)
151 2ekl_A D-3-phosphoglycerate de 71.8 8.2 0.00028 33.5 6.6 167 48-240 3-208 (313)
152 3tem_A Ribosyldihydronicotinam 71.8 2.7 9.1E-05 34.9 3.3 70 179-248 2-119 (228)
153 3cg4_A Response regulator rece 71.3 16 0.00054 26.3 7.3 111 46-173 3-123 (142)
154 8abp_A L-arabinose-binding pro 71.2 3.8 0.00013 34.3 4.2 177 64-260 23-231 (306)
155 5nul_A Flavodoxin; electron tr 70.9 7.6 0.00026 28.7 5.5 12 161-172 9-20 (138)
156 3h1g_A Chemotaxis protein CHEY 70.8 25 0.00086 24.9 10.3 111 48-174 3-124 (129)
157 3l5o_A Uncharacterized protein 70.5 8.4 0.00029 33.0 6.2 115 46-173 137-253 (270)
158 4fs3_A Enoyl-[acyl-carrier-pro 70.4 18 0.0006 30.0 8.2 85 47-135 3-95 (256)
159 4b79_A PA4098, probable short- 70.3 15 0.00051 30.7 7.6 32 48-79 9-41 (242)
160 3gl9_A Response regulator; bet 70.2 25 0.00087 24.7 10.8 107 50-173 2-118 (122)
161 1sc6_A PGDH, D-3-phosphoglycer 69.9 62 0.0021 29.0 14.8 165 50-239 4-208 (404)
162 3gbv_A Putative LACI-family tr 69.0 14 0.00049 30.5 7.4 82 63-145 159-243 (304)
163 3lkb_A Probable branched-chain 69.0 56 0.0019 28.1 11.6 146 101-258 74-228 (392)
164 3h9u_A Adenosylhomocysteinase; 68.9 67 0.0023 29.3 12.2 35 44-78 37-72 (436)
165 4dyv_A Short-chain dehydrogena 68.3 23 0.00077 29.6 8.5 148 47-208 25-206 (272)
166 2aef_A Calcium-gated potassium 68.1 9 0.00031 31.2 5.8 111 50-170 9-136 (234)
167 3uce_A Dehydrogenase; rossmann 68.0 3.1 0.00011 33.7 2.9 63 48-110 4-67 (223)
168 2q5c_A NTRC family transcripti 68.0 15 0.00053 29.5 7.1 47 137-190 60-106 (196)
169 1rtt_A Conserved hypothetical 67.9 11 0.00038 29.6 6.2 83 51-134 7-114 (193)
170 3r6w_A FMN-dependent NADH-azor 67.9 5.9 0.0002 32.0 4.5 56 192-247 24-113 (212)
171 3t4x_A Oxidoreductase, short c 67.9 20 0.00069 29.6 8.1 35 45-79 5-40 (267)
172 3eaf_A ABC transporter, substr 67.4 42 0.0014 29.0 10.4 138 100-251 74-223 (391)
173 4dgs_A Dehydrogenase; structur 67.3 15 0.0005 32.4 7.3 166 48-239 28-233 (340)
174 2a5l_A Trp repressor binding p 67.0 12 0.00042 29.3 6.2 71 191-261 24-115 (200)
175 2q9u_A A-type flavoprotein; fl 67.0 30 0.001 30.5 9.5 78 179-261 257-348 (414)
176 3lop_A Substrate binding perip 66.9 32 0.0011 29.3 9.4 143 101-258 72-226 (364)
177 4fgs_A Probable dehydrogenase 66.9 19 0.00066 30.5 7.8 71 46-123 25-99 (273)
178 3i09_A Periplasmic branched-ch 66.7 50 0.0017 28.2 10.7 138 101-251 70-219 (375)
179 1cyd_A Carbonyl reductase; sho 66.6 25 0.00085 28.2 8.3 34 46-79 3-37 (244)
180 3fvw_A Putative NAD(P)H-depend 66.6 25 0.00086 27.8 8.1 68 180-249 4-95 (192)
181 1dxy_A D-2-hydroxyisocaproate 66.4 50 0.0017 28.7 10.6 168 51-240 1-209 (333)
182 2rjn_A Response regulator rece 66.3 35 0.0012 24.9 12.9 113 46-173 3-122 (154)
183 2j48_A Two-component sensor ki 66.2 28 0.00094 23.6 7.7 108 50-174 1-115 (119)
184 3rpe_A MDAB, modulator of drug 65.8 8.2 0.00028 31.8 5.0 65 179-247 26-109 (218)
185 2hpv_A FMN-dependent NADH-azor 65.4 8.7 0.0003 30.6 5.1 58 191-248 24-121 (208)
186 3l9w_A Glutathione-regulated p 65.3 35 0.0012 30.7 9.6 111 50-168 4-131 (413)
187 3aek_B Light-independent proto 65.2 45 0.0015 31.0 10.6 140 61-211 171-314 (525)
188 1fs0_G ATP synthase gamma subu 64.8 8.8 0.0003 31.8 5.1 49 102-156 57-116 (230)
189 3fni_A Putative diflavin flavo 64.8 9.3 0.00032 29.5 5.0 68 63-136 23-95 (159)
190 3pdi_B Nitrogenase MOFE cofact 64.8 27 0.00094 31.9 8.9 153 50-212 169-347 (458)
191 2g76_A 3-PGDH, D-3-phosphoglyc 64.6 72 0.0024 27.8 12.0 163 51-239 27-230 (335)
192 2qip_A Protein of unknown func 64.5 2.9 0.0001 32.7 1.9 82 62-145 63-152 (165)
193 3m3p_A Glutamine amido transfe 64.1 7 0.00024 32.9 4.4 54 49-111 2-57 (250)
194 4a26_A Putative C-1-tetrahydro 63.8 10 0.00035 32.9 5.4 164 52-238 41-220 (300)
195 3m6m_D Sensory/regulatory prot 63.7 39 0.0013 24.5 11.3 112 47-175 11-134 (143)
196 3fni_A Putative diflavin flavo 63.6 14 0.00047 28.5 5.7 66 192-261 24-94 (159)
197 3f6r_A Flavodoxin; FMN binding 63.2 8.6 0.00029 28.8 4.4 62 63-135 20-92 (148)
198 2ark_A Flavodoxin; FMN, struct 63.1 25 0.00086 27.5 7.4 33 228-260 52-94 (188)
199 3hly_A Flavodoxin-like domain; 62.3 21 0.00071 27.4 6.6 11 162-172 12-22 (161)
200 3sg0_A Extracellular ligand-bi 62.1 37 0.0013 28.9 9.0 137 101-251 88-238 (386)
201 1req_A Methylmalonyl-COA mutas 62.1 63 0.0022 31.5 11.1 110 50-172 596-718 (727)
202 2et6_A (3R)-hydroxyacyl-COA de 62.0 54 0.0018 31.0 10.6 149 46-210 318-498 (604)
203 3rd5_A Mypaa.01249.C; ssgcid, 61.9 33 0.0011 28.7 8.4 34 46-79 12-46 (291)
204 3hdg_A Uncharacterized protein 61.8 40 0.0014 23.9 10.3 108 49-174 6-122 (137)
205 3cg0_A Response regulator rece 61.8 40 0.0014 23.9 8.6 110 46-173 5-124 (140)
206 3hly_A Flavodoxin-like domain; 61.6 13 0.00043 28.6 5.2 66 63-135 19-89 (161)
207 3ek2_A Enoyl-(acyl-carrier-pro 61.6 35 0.0012 27.8 8.4 75 46-124 10-89 (271)
208 3h5i_A Response regulator/sens 61.4 26 0.00091 25.2 6.8 108 48-173 3-120 (140)
209 3q2o_A Phosphoribosylaminoimid 61.3 73 0.0025 27.8 10.9 35 46-80 10-44 (389)
210 3kht_A Response regulator; PSI 61.3 42 0.0014 24.0 10.6 110 49-173 4-124 (144)
211 2pju_A Propionate catabolism o 61.3 14 0.00049 30.5 5.7 57 131-194 66-122 (225)
212 1q7r_A Predicted amidotransfer 60.9 16 0.00053 29.7 5.9 52 46-112 19-70 (219)
213 1rli_A Trp repressor binding p 60.8 10 0.00035 29.4 4.6 28 221-248 64-98 (184)
214 3dii_A Short-chain dehydrogena 60.5 23 0.00077 28.9 6.9 79 50-135 2-84 (247)
215 2fz5_A Flavodoxin; alpha/beta 60.4 6.6 0.00022 28.8 3.2 61 63-135 18-87 (137)
216 3d3w_A L-xylulose reductase; u 60.4 41 0.0014 26.9 8.5 34 46-79 3-37 (244)
217 1gz6_A Estradiol 17 beta-dehyd 59.3 19 0.00064 31.0 6.4 78 46-123 5-88 (319)
218 3s99_A Basic membrane lipoprot 59.1 79 0.0027 27.7 10.6 134 101-249 85-227 (356)
219 1xdw_A NAD+-dependent (R)-2-hy 59.0 89 0.003 27.0 12.0 168 51-239 1-209 (331)
220 3gem_A Short chain dehydrogena 58.8 8.6 0.00029 32.0 4.0 71 46-124 23-96 (260)
221 2q62_A ARSH; alpha/beta, flavo 58.7 18 0.0006 30.3 5.9 88 47-135 31-143 (247)
222 3kp1_A D-ornithine aminomutase 58.6 42 0.0014 32.5 8.9 111 50-173 602-731 (763)
223 3f9i_A 3-oxoacyl-[acyl-carrier 58.6 38 0.0013 27.3 8.0 33 46-78 10-43 (249)
224 4gi5_A Quinone reductase; prot 58.5 15 0.0005 31.5 5.5 70 179-248 23-139 (280)
225 2ag5_A DHRS6, dehydrogenase/re 58.5 35 0.0012 27.6 7.8 32 48-79 4-36 (246)
226 2yq5_A D-isomer specific 2-hyd 58.3 7.7 0.00026 34.3 3.7 169 51-238 2-210 (343)
227 3f2v_A General stress protein 58.2 3.3 0.00011 33.5 1.2 60 62-122 19-85 (192)
228 2fz5_A Flavodoxin; alpha/beta 58.2 16 0.00055 26.6 5.1 34 227-261 45-87 (137)
229 3oig_A Enoyl-[acyl-carrier-pro 58.1 50 0.0017 26.9 8.7 86 46-135 3-96 (266)
230 4da9_A Short-chain dehydrogena 58.0 12 0.00042 31.4 4.9 167 25-208 10-213 (280)
231 3ezx_A MMCP 1, monomethylamine 57.4 25 0.00084 28.7 6.5 91 49-145 91-194 (215)
232 3k4h_A Putative transcriptiona 56.9 19 0.00065 29.6 5.9 89 50-138 131-231 (292)
233 3i45_A Twin-arginine transloca 56.5 62 0.0021 27.8 9.5 145 101-259 72-232 (387)
234 2zay_A Response regulator rece 56.5 52 0.0018 23.6 9.6 109 48-173 6-124 (147)
235 3f6r_A Flavodoxin; FMN binding 55.9 35 0.0012 25.2 6.8 22 239-260 70-91 (148)
236 3uf0_A Short-chain dehydrogena 55.6 14 0.00048 30.9 4.9 102 24-135 9-115 (273)
237 3grc_A Sensor protein, kinase; 55.6 52 0.0018 23.3 10.8 111 50-174 6-124 (140)
238 4dim_A Phosphoribosylglycinami 55.2 71 0.0024 27.9 9.7 77 48-125 5-95 (403)
239 2fzv_A Putative arsenical resi 55.0 18 0.0006 31.0 5.4 86 49-135 57-168 (279)
240 3lua_A Response regulator rece 54.8 54 0.0019 23.3 9.3 109 50-174 4-124 (140)
241 1qgu_B Protein (nitrogenase mo 54.7 12 0.00039 35.1 4.5 139 63-209 234-391 (519)
242 3lcm_A SMU.1420, putative oxid 54.4 9.4 0.00032 30.5 3.4 49 199-247 28-99 (196)
243 2gk3_A Putative cytoplasmic pr 54.2 9.6 0.00033 32.0 3.5 47 58-110 38-85 (256)
244 2vzf_A NADH-dependent FMN redu 54.2 6 0.00021 31.5 2.2 71 65-135 25-109 (197)
245 4gkb_A 3-oxoacyl-[acyl-carrier 53.9 71 0.0024 26.6 9.0 150 46-209 3-183 (258)
246 1xrs_B D-lysine 5,6-aminomutas 53.8 66 0.0023 27.2 8.7 111 50-173 120-254 (262)
247 1sqs_A Conserved hypothetical 53.8 19 0.00064 29.5 5.3 58 65-122 24-106 (242)
248 3e8x_A Putative NAD-dependent 53.7 13 0.00043 30.0 4.1 34 46-79 17-51 (236)
249 3aek_B Light-independent proto 53.7 50 0.0017 30.7 8.7 108 28-155 262-370 (525)
250 2k6g_A Replication factor C su 53.3 21 0.00072 26.0 4.9 32 46-77 31-64 (109)
251 2hna_A Protein MIOC, flavodoxi 52.9 36 0.0012 25.3 6.4 60 63-135 20-89 (147)
252 2dr1_A PH1308 protein, 386AA l 52.8 1E+02 0.0034 26.1 10.1 86 163-250 80-175 (386)
253 3b6i_A Flavoprotein WRBA; flav 52.7 41 0.0014 26.0 7.0 37 225-261 65-112 (198)
254 1ydg_A Trp repressor binding p 52.6 82 0.0028 24.7 8.9 82 179-260 7-121 (211)
255 3h75_A Periplasmic sugar-bindi 52.5 90 0.0031 26.4 9.7 100 51-159 146-261 (350)
256 4gi5_A Quinone reductase; prot 51.7 9 0.00031 32.9 3.0 79 46-124 18-141 (280)
257 3l5o_A Uncharacterized protein 51.5 65 0.0022 27.3 8.3 79 177-262 140-220 (270)
258 1lnq_A MTHK channels, potassiu 51.5 48 0.0016 28.4 7.8 111 50-170 115-242 (336)
259 3g85_A Transcriptional regulat 51.4 17 0.00059 29.9 4.7 76 64-139 148-230 (289)
260 4hs4_A Chromate reductase; tri 51.3 23 0.00077 28.4 5.2 40 222-261 67-116 (199)
261 2ehd_A Oxidoreductase, oxidore 51.0 53 0.0018 26.1 7.6 80 49-135 4-87 (234)
262 1d4a_A DT-diaphorase, quinone 50.7 13 0.00045 31.4 3.9 69 180-248 4-120 (273)
263 2cok_A Poly [ADP-ribose] polym 50.7 25 0.00085 25.8 4.9 33 45-77 8-41 (113)
264 4id3_A DNA repair protein REV1 50.7 22 0.00077 24.1 4.5 35 43-77 3-38 (92)
265 1ycg_A Nitric oxide reductase; 50.3 77 0.0026 27.5 9.1 66 191-261 270-342 (398)
266 3pp8_A Glyoxylate/hydroxypyruv 50.1 1.2E+02 0.0042 26.0 12.1 60 177-239 138-204 (315)
267 3tem_A Ribosyldihydronicotinam 50.0 8.3 0.00028 31.8 2.4 59 63-121 22-118 (228)
268 3u7q_A Nitrogenase molybdenum- 49.7 81 0.0028 29.1 9.4 135 60-210 233-380 (492)
269 4gx0_A TRKA domain protein; me 49.3 59 0.002 30.1 8.5 112 51-172 349-475 (565)
270 2hqr_A Putative transcriptiona 49.3 91 0.0031 24.3 10.1 106 52-175 2-113 (223)
271 3tb6_A Arabinose metabolism tr 49.2 17 0.00057 30.0 4.3 74 65-138 158-240 (298)
272 4g65_A TRK system potassium up 49.2 1.5E+02 0.0052 26.8 11.8 207 50-261 3-242 (461)
273 1e5d_A Rubredoxin\:oxygen oxid 49.1 28 0.00097 30.5 6.0 79 50-135 252-343 (402)
274 3i42_A Response regulator rece 49.1 63 0.0022 22.4 8.0 109 50-175 3-120 (127)
275 1mio_A Nitrogenase molybdenum 49.1 26 0.00088 32.8 5.9 140 61-211 220-368 (533)
276 3u62_A Shikimate dehydrogenase 48.8 12 0.0004 31.5 3.2 145 66-239 20-177 (253)
277 2gkg_A Response regulator homo 48.8 62 0.0021 22.1 8.8 110 50-173 5-121 (127)
278 2xdq_A Light-independent proto 48.5 74 0.0025 28.7 8.9 141 51-209 197-348 (460)
279 3glv_A Lipopolysaccharide core 48.5 67 0.0023 24.0 7.3 71 61-137 17-94 (143)
280 3l7n_A Putative uncharacterize 48.3 14 0.00049 30.3 3.6 83 51-146 1-101 (236)
281 3rkr_A Short chain oxidoreduct 48.2 19 0.00065 29.7 4.5 84 47-135 26-115 (262)
282 3edm_A Short chain dehydrogena 47.9 50 0.0017 27.1 7.0 75 46-124 4-83 (259)
283 3l07_A Bifunctional protein fo 47.9 53 0.0018 28.1 7.3 163 51-237 37-213 (285)
284 1k66_A Phytochrome response re 47.7 72 0.0025 22.6 10.6 111 47-173 3-134 (149)
285 3hv2_A Response regulator/HD d 47.7 77 0.0026 22.9 11.1 109 47-173 11-129 (153)
286 4id9_A Short-chain dehydrogena 47.6 95 0.0032 26.1 9.1 63 45-110 14-85 (347)
287 3u7r_A NADPH-dependent FMN red 47.6 71 0.0024 25.3 7.6 39 222-260 61-110 (190)
288 3lte_A Response regulator; str 47.5 69 0.0023 22.3 11.3 109 49-174 5-122 (132)
289 3njr_A Precorrin-6Y methylase; 47.5 67 0.0023 25.3 7.5 99 110-216 86-186 (204)
290 2yxd_A Probable cobalt-precorr 47.3 85 0.0029 23.3 9.6 93 110-212 66-159 (183)
291 3oec_A Carveol dehydrogenase ( 47.3 50 0.0017 28.1 7.1 153 47-208 43-237 (317)
292 2ebu_A Replication factor C su 47.0 27 0.00092 25.6 4.6 32 46-77 21-54 (112)
293 3i4f_A 3-oxoacyl-[acyl-carrier 46.9 46 0.0016 27.1 6.7 87 46-135 3-94 (264)
294 1o5i_A 3-oxoacyl-(acyl carrier 46.8 21 0.00073 29.2 4.5 34 46-79 15-49 (249)
295 1y80_A Predicted cobalamin bin 46.6 32 0.0011 27.5 5.5 79 178-262 88-179 (210)
296 1rli_A Trp repressor binding p 46.6 13 0.00045 28.7 3.0 71 51-122 4-98 (184)
297 4e5n_A Thermostable phosphite 46.5 45 0.0015 29.0 6.7 166 50-239 2-211 (330)
298 1vjo_A Alanine--glyoxylate ami 46.4 96 0.0033 26.4 9.0 60 176-237 107-168 (393)
299 3egc_A Putative ribose operon 46.2 24 0.00082 29.1 4.8 90 50-139 125-226 (291)
300 3gv0_A Transcriptional regulat 46.2 19 0.00067 29.7 4.2 102 50-159 127-242 (288)
301 3npg_A Uncharacterized DUF364 46.1 31 0.0011 28.9 5.5 111 133-262 83-198 (249)
302 1u7z_A Coenzyme A biosynthesis 46.1 16 0.00055 30.3 3.6 33 47-79 5-54 (226)
303 2fwm_X 2,3-dihydro-2,3-dihydro 45.6 66 0.0023 26.0 7.4 33 47-79 4-37 (250)
304 3sxp_A ADP-L-glycero-D-mannohe 45.4 1.4E+02 0.0048 25.3 11.2 34 46-79 6-42 (362)
305 2ohh_A Type A flavoprotein FPR 45.1 21 0.00072 31.3 4.5 65 64-135 276-350 (404)
306 3g1w_A Sugar ABC transporter; 45.0 70 0.0024 26.3 7.6 94 51-144 128-232 (305)
307 2qr3_A Two-component system re 45.0 78 0.0027 22.2 9.3 107 50-174 3-123 (140)
308 3l4e_A Uncharacterized peptida 44.9 30 0.001 28.0 5.0 71 47-125 24-101 (206)
309 3p2o_A Bifunctional protein fo 44.7 60 0.0021 27.8 7.1 160 52-237 37-212 (285)
310 4e3z_A Putative oxidoreductase 44.6 55 0.0019 26.9 6.8 96 27-135 12-113 (272)
311 3ddh_A Putative haloacid dehal 44.6 31 0.0011 26.6 5.1 89 60-160 108-203 (234)
312 3i6i_A Putative leucoanthocyan 44.5 41 0.0014 28.7 6.2 79 46-125 6-110 (346)
313 3v2h_A D-beta-hydroxybutyrate 44.5 23 0.00077 29.7 4.4 87 25-124 10-101 (281)
314 3p0r_A Azoreductase; structura 44.5 33 0.0011 27.6 5.2 69 180-248 6-119 (211)
315 2i2x_B MTAC, methyltransferase 44.3 1.2E+02 0.004 25.2 8.8 79 177-262 122-212 (258)
316 4dry_A 3-oxoacyl-[acyl-carrier 44.3 47 0.0016 27.7 6.4 152 46-208 29-215 (281)
317 3ruf_A WBGU; rossmann fold, UD 44.2 1.4E+02 0.0049 25.0 10.1 33 47-79 22-55 (351)
318 2ch1_A 3-hydroxykynurenine tra 44.2 1.1E+02 0.0037 26.1 9.0 59 177-237 92-152 (396)
319 3t6k_A Response regulator rece 44.1 83 0.0028 22.3 10.5 109 49-174 3-121 (136)
320 3v2g_A 3-oxoacyl-[acyl-carrier 44.0 23 0.0008 29.5 4.4 88 28-123 13-105 (271)
321 1a4i_A Methylenetetrahydrofola 43.9 63 0.0022 27.9 7.1 163 51-238 38-218 (301)
322 3svl_A Protein YIEF; E. coli C 43.9 43 0.0015 26.5 5.8 40 222-261 66-115 (193)
323 4e4t_A Phosphoribosylaminoimid 43.8 77 0.0026 28.3 8.1 34 47-80 32-65 (419)
324 3ksm_A ABC-type sugar transpor 43.8 33 0.0011 27.7 5.3 86 51-138 128-224 (276)
325 3l6u_A ABC-type sugar transpor 43.4 27 0.00093 28.7 4.7 82 52-137 137-230 (293)
326 1k68_A Phytochrome response re 43.3 81 0.0028 21.9 11.1 110 50-173 2-127 (140)
327 3oml_A GH14720P, peroxisomal m 43.1 27 0.00093 33.1 5.2 155 46-209 15-204 (613)
328 1l7b_A DNA ligase; BRCT, autos 42.8 28 0.00097 24.4 4.0 32 46-77 6-38 (92)
329 1t0i_A YLR011WP; FMN binding p 42.7 22 0.00077 27.7 3.9 19 94-112 76-94 (191)
330 2dr1_A PH1308 protein, 386AA l 42.7 24 0.00081 30.2 4.4 75 49-124 94-175 (386)
331 8abp_A L-arabinose-binding pro 42.7 51 0.0017 27.1 6.4 74 63-138 153-235 (306)
332 3rht_A (gatase1)-like protein; 42.6 33 0.0011 29.0 5.0 63 179-248 5-77 (259)
333 2yvq_A Carbamoyl-phosphate syn 42.5 1.1E+02 0.0036 23.0 8.0 37 112-158 37-73 (143)
334 4a5o_A Bifunctional protein fo 42.3 51 0.0017 28.3 6.2 161 52-237 39-213 (286)
335 2xok_G ATP synthase subunit ga 42.1 34 0.0012 29.8 5.2 63 103-173 105-185 (311)
336 3tnl_A Shikimate dehydrogenase 41.9 49 0.0017 28.7 6.2 32 46-77 150-182 (315)
337 3kto_A Response regulator rece 41.9 89 0.003 22.0 8.7 107 50-174 6-123 (136)
338 3dzz_A Putative pyridoxal 5'-p 41.8 1.3E+02 0.0044 25.5 9.1 74 49-125 108-193 (391)
339 3gyb_A Transcriptional regulat 41.7 53 0.0018 26.7 6.2 86 50-138 118-215 (280)
340 3ngx_A Bifunctional protein fo 41.5 33 0.0011 29.4 4.8 160 52-238 31-203 (276)
341 3kke_A LACI family transcripti 41.3 41 0.0014 27.9 5.6 90 50-139 131-237 (303)
342 3npg_A Uncharacterized DUF364 41.1 44 0.0015 28.0 5.6 113 49-173 115-232 (249)
343 3d7l_A LIN1944 protein; APC893 41.0 47 0.0016 25.7 5.6 59 51-110 4-66 (202)
344 2zki_A 199AA long hypothetical 40.7 23 0.00077 27.8 3.6 67 192-260 23-113 (199)
345 2huf_A Alanine glyoxylate amin 40.7 1.4E+02 0.0048 25.3 9.1 59 177-237 93-153 (393)
346 2amj_A Modulator of drug activ 40.6 15 0.00053 29.5 2.6 53 64-122 38-97 (204)
347 3qk7_A Transcriptional regulat 40.5 23 0.00078 29.4 3.8 74 65-138 148-226 (294)
348 2hpv_A FMN-dependent NADH-azor 40.4 11 0.00037 30.0 1.6 60 63-122 24-121 (208)
349 2ywj_A Glutamine amidotransfer 40.3 52 0.0018 25.5 5.7 76 51-145 1-84 (186)
350 3ej6_A Catalase-3; heme, hydro 40.2 2.3E+02 0.0079 27.4 11.0 92 47-154 534-649 (688)
351 2h1q_A Hypothetical protein; Z 40.1 90 0.0031 26.4 7.5 79 177-262 140-220 (270)
352 2rdm_A Response regulator rece 40.0 91 0.0031 21.6 10.4 109 48-173 3-119 (132)
353 4dad_A Putative pilus assembly 39.9 99 0.0034 22.0 9.9 111 46-173 16-137 (146)
354 3sx2_A Putative 3-ketoacyl-(ac 39.6 33 0.0011 28.4 4.6 156 45-209 8-205 (278)
355 1vl8_A Gluconate 5-dehydrogena 39.5 34 0.0011 28.3 4.7 83 46-135 17-108 (267)
356 2q9u_A A-type flavoprotein; fl 39.3 44 0.0015 29.4 5.7 65 64-135 276-348 (414)
357 3svt_A Short-chain type dehydr 39.3 32 0.0011 28.5 4.5 76 44-123 5-87 (281)
358 2xw6_A MGS, methylglyoxal synt 39.3 61 0.0021 24.5 5.6 89 128-249 31-124 (134)
359 4fs3_A Enoyl-[acyl-carrier-pro 39.2 49 0.0017 27.2 5.6 58 190-249 21-82 (256)
360 4dqx_A Probable oxidoreductase 39.2 33 0.0011 28.6 4.6 83 46-135 23-110 (277)
361 3ucx_A Short chain dehydrogena 39.0 41 0.0014 27.6 5.1 76 44-124 5-85 (264)
362 4iin_A 3-ketoacyl-acyl carrier 38.7 32 0.0011 28.4 4.4 86 46-135 25-116 (271)
363 3heb_A Response regulator rece 38.7 1.1E+02 0.0037 22.0 11.5 108 50-173 4-131 (152)
364 3k5i_A Phosphoribosyl-aminoimi 38.4 1.1E+02 0.0039 26.9 8.3 35 46-80 20-54 (403)
365 3g89_A Ribosomal RNA small sub 38.4 86 0.003 25.6 7.1 104 103-210 105-212 (249)
366 2dri_A D-ribose-binding protei 38.4 39 0.0013 27.5 4.9 83 51-137 124-217 (271)
367 3o74_A Fructose transport syst 38.3 11 0.00036 30.8 1.3 46 93-138 170-218 (272)
368 4evq_A Putative ABC transporte 38.3 95 0.0033 26.2 7.6 85 49-136 150-240 (375)
369 3h5l_A Putative branched-chain 38.2 1.9E+02 0.0066 24.9 10.3 72 178-251 164-244 (419)
370 4h15_A Short chain alcohol deh 37.9 33 0.0011 28.7 4.3 143 47-209 8-183 (261)
371 3r6w_A FMN-dependent NADH-azor 37.8 19 0.00065 28.8 2.7 58 64-121 24-113 (212)
372 3hs3_A Ribose operon repressor 37.7 48 0.0016 27.1 5.4 86 50-138 122-217 (277)
373 2pzm_A Putative nucleotide sug 37.6 31 0.0011 29.2 4.3 37 43-79 13-50 (330)
374 3n75_A LDC, lysine decarboxyla 37.6 77 0.0026 30.8 7.4 69 61-138 18-86 (715)
375 3apt_A Methylenetetrahydrofola 37.5 76 0.0026 27.3 6.7 107 138-250 63-198 (310)
376 2nv0_A Glutamine amidotransfer 37.5 48 0.0016 26.0 5.1 79 51-145 2-88 (196)
377 2bkw_A Alanine-glyoxylate amin 37.5 33 0.0011 29.2 4.5 75 49-124 85-166 (385)
378 3rfq_A Pterin-4-alpha-carbinol 37.4 44 0.0015 26.6 4.8 50 61-114 50-101 (185)
379 3hzh_A Chemotaxis response reg 37.3 1.2E+02 0.004 22.1 10.7 109 50-174 36-154 (157)
380 1y1p_A ARII, aldehyde reductas 37.2 44 0.0015 28.0 5.2 38 42-79 3-41 (342)
381 1xdz_A Methyltransferase GIDB; 37.0 1.3E+02 0.0046 23.9 8.0 93 110-211 103-203 (240)
382 2iuf_A Catalase; oxidoreductas 36.9 1.4E+02 0.0047 28.9 8.9 93 46-154 525-651 (688)
383 3isl_A Purine catabolism prote 36.9 1.3E+02 0.0044 25.8 8.3 60 176-237 84-145 (416)
384 3rot_A ABC sugar transporter, 36.9 43 0.0015 27.7 5.0 85 50-139 130-229 (297)
385 3h5l_A Putative branched-chain 36.5 1.1E+02 0.0037 26.6 7.8 82 49-133 163-251 (419)
386 3uve_A Carveol dehydrogenase ( 36.4 41 0.0014 27.9 4.8 157 44-209 5-208 (286)
387 3nnk_A Ureidoglycine-glyoxylat 36.3 1.5E+02 0.005 25.3 8.6 33 177-209 87-119 (411)
388 3ftp_A 3-oxoacyl-[acyl-carrier 36.3 37 0.0013 28.2 4.4 77 43-123 21-101 (270)
389 3t7c_A Carveol dehydrogenase; 36.3 42 0.0014 28.2 4.8 157 44-209 22-221 (299)
390 3snr_A Extracellular ligand-bi 36.1 1.3E+02 0.0043 25.1 8.0 83 49-134 134-222 (362)
391 2qh8_A Uncharacterized protein 36.1 78 0.0027 26.2 6.5 64 192-261 28-97 (302)
392 3l7o_A Ribose-5-phosphate isom 36.0 81 0.0028 26.0 6.3 53 97-155 13-68 (225)
393 3l4e_A Uncharacterized peptida 35.9 73 0.0025 25.6 6.0 68 177-250 26-100 (206)
394 1ccw_A Protein (glutamate muta 35.9 45 0.0015 24.9 4.5 67 189-261 19-92 (137)
395 1b0a_A Protein (fold bifunctio 35.7 62 0.0021 27.8 5.7 161 52-237 37-211 (288)
396 1e6u_A GDP-fucose synthetase; 35.7 30 0.001 28.9 3.8 62 49-111 2-64 (321)
397 4e6p_A Probable sorbitol dehyd 35.6 41 0.0014 27.5 4.6 83 46-135 4-91 (259)
398 3is3_A 17BETA-hydroxysteroid d 35.6 44 0.0015 27.6 4.8 75 45-123 13-92 (270)
399 3vtz_A Glucose 1-dehydrogenase 35.5 39 0.0013 28.0 4.5 34 46-79 10-44 (269)
400 3lft_A Uncharacterized protein 35.4 93 0.0032 25.6 6.9 64 192-261 22-90 (295)
401 3ai3_A NADPH-sorbose reductase 35.3 46 0.0016 27.1 4.9 86 46-135 3-94 (263)
402 1kjq_A GART 2, phosphoribosylg 35.1 72 0.0025 27.7 6.3 75 49-124 10-96 (391)
403 2gk4_A Conserved hypothetical 35.0 39 0.0013 28.0 4.2 31 49-79 2-49 (232)
404 3cs3_A Sugar-binding transcrip 34.9 35 0.0012 27.8 4.1 72 64-138 139-216 (277)
405 3ksx_A Nitrate transport prote 34.8 86 0.0029 26.2 6.6 67 45-116 126-192 (324)
406 2pd6_A Estradiol 17-beta-dehyd 34.8 48 0.0016 26.8 4.9 34 46-79 3-37 (264)
407 1ycg_A Nitric oxide reductase; 34.8 36 0.0012 29.7 4.3 65 64-135 271-342 (398)
408 1t6t_1 Putative protein; struc 34.7 1.4E+02 0.0046 22.0 7.6 79 116-204 10-93 (118)
409 3iwt_A 178AA long hypothetical 34.6 31 0.0011 26.9 3.4 49 62-114 42-93 (178)
410 3d8u_A PURR transcriptional re 34.5 43 0.0015 27.0 4.5 73 64-138 141-220 (275)
411 3don_A Shikimate dehydrogenase 34.5 66 0.0023 27.2 5.8 150 65-240 19-187 (277)
412 3evz_A Methyltransferase; NYSG 34.5 47 0.0016 26.3 4.6 47 165-211 159-207 (230)
413 3ha2_A NADPH-quinone reductase 34.4 83 0.0028 24.6 6.0 45 199-247 26-77 (177)
414 3gaf_A 7-alpha-hydroxysteroid 34.3 38 0.0013 27.7 4.1 74 45-123 7-85 (256)
415 2pjm_A Ribose-5-phosphate isom 34.3 56 0.0019 27.0 5.1 53 97-155 15-70 (226)
416 3u7i_A FMN-dependent NADH-azor 34.2 51 0.0017 26.8 4.9 71 179-249 5-122 (223)
417 3s2u_A UDP-N-acetylglucosamine 34.2 1.8E+02 0.0063 24.9 8.9 63 128-199 254-320 (365)
418 2fn9_A Ribose ABC transporter, 34.2 35 0.0012 27.9 3.9 44 93-136 182-225 (290)
419 4eyg_A Twin-arginine transloca 34.0 79 0.0027 26.7 6.3 93 49-143 138-239 (368)
420 1o2d_A Alcohol dehydrogenase, 34.0 1.1E+02 0.0038 26.7 7.4 61 178-241 40-112 (371)
421 3vot_A L-amino acid ligase, BL 33.9 2.3E+02 0.0079 24.8 9.6 32 48-79 3-34 (425)
422 3ek2_A Enoyl-(acyl-carrier-pro 33.9 64 0.0022 26.1 5.5 71 177-249 13-88 (271)
423 2v25_A Major cell-binding fact 33.9 1E+02 0.0034 24.1 6.6 60 46-112 144-203 (259)
424 1lk5_A D-ribose-5-phosphate is 33.7 1.2E+02 0.0042 24.8 7.1 49 97-145 15-67 (229)
425 3nyw_A Putative oxidoreductase 33.6 36 0.0012 27.8 3.9 74 46-123 3-83 (250)
426 2ew8_A (S)-1-phenylethanol deh 33.5 48 0.0016 26.9 4.6 72 46-123 3-78 (249)
427 3tpc_A Short chain alcohol deh 33.5 47 0.0016 27.1 4.6 71 46-123 3-77 (257)
428 1nff_A Putative oxidoreductase 33.4 50 0.0017 27.1 4.7 71 46-123 3-77 (260)
429 3pzy_A MOG; ssgcid, seattle st 33.2 43 0.0015 26.0 4.0 49 61-114 28-78 (164)
430 1uj6_A Ribose 5-phosphate isom 33.2 1.2E+02 0.0042 24.8 7.0 49 97-145 17-69 (227)
431 3qiv_A Short-chain dehydrogena 33.1 49 0.0017 26.7 4.6 85 46-135 5-95 (253)
432 2qxy_A Response regulator; reg 33.0 1.3E+02 0.0043 21.2 12.4 106 50-173 4-117 (142)
433 1zem_A Xylitol dehydrogenase; 33.0 49 0.0017 27.1 4.6 73 46-123 3-80 (262)
434 3lkb_A Probable branched-chain 33.0 1.8E+02 0.0062 24.7 8.6 84 49-135 142-231 (392)
435 3tsc_A Putative oxidoreductase 32.9 48 0.0017 27.3 4.6 156 45-209 6-204 (277)
436 2z9v_A Aspartate aminotransfer 32.8 2E+02 0.0069 24.2 8.9 86 163-250 68-163 (392)
437 1g0o_A Trihydroxynaphthalene r 32.7 70 0.0024 26.4 5.6 33 46-78 25-58 (283)
438 3nbm_A PTS system, lactose-spe 32.7 87 0.003 22.5 5.4 74 178-261 6-85 (108)
439 2pnf_A 3-oxoacyl-[acyl-carrier 32.6 50 0.0017 26.4 4.6 34 46-79 3-37 (248)
440 3kwm_A Ribose-5-phosphate isom 32.5 1E+02 0.0035 25.3 6.4 52 97-155 21-73 (224)
441 3e03_A Short chain dehydrogena 32.5 53 0.0018 27.1 4.8 154 46-209 2-194 (274)
442 1jx6_A LUXP protein; protein-l 32.4 63 0.0022 27.2 5.4 86 50-138 175-270 (342)
443 2f8m_A Ribose 5-phosphate isom 32.3 82 0.0028 26.3 5.9 51 99-155 24-78 (244)
444 3oid_A Enoyl-[acyl-carrier-pro 32.3 1.1E+02 0.0039 24.8 6.8 83 49-135 3-91 (258)
445 3p19_A BFPVVD8, putative blue 32.2 49 0.0017 27.3 4.5 67 46-123 12-83 (266)
446 3jte_A Response regulator rece 32.2 1.3E+02 0.0045 21.1 11.6 107 50-173 3-119 (143)
447 2z9v_A Aspartate aminotransfer 32.2 36 0.0012 29.2 3.8 75 49-124 82-163 (392)
448 2h3h_A Sugar ABC transporter, 31.8 62 0.0021 26.9 5.2 84 51-138 124-219 (313)
449 3k31_A Enoyl-(acyl-carrier-pro 31.7 61 0.0021 27.2 5.1 86 46-135 26-117 (296)
450 4fn4_A Short chain dehydrogena 31.7 40 0.0014 28.1 3.9 149 47-209 4-187 (254)
451 3kgw_A Alanine-glyoxylate amin 31.7 2.1E+02 0.0073 24.0 8.8 60 176-237 96-157 (393)
452 3ph3_A Ribose-5-phosphate isom 31.7 1.8E+02 0.0063 22.8 7.4 113 48-172 18-140 (169)
453 2dwc_A PH0318, 433AA long hypo 31.7 82 0.0028 27.9 6.2 76 49-125 18-105 (433)
454 3kcn_A Adenylate cyclase homol 31.6 1.4E+02 0.0048 21.3 12.5 110 50-174 4-120 (151)
455 3imf_A Short chain dehydrogena 31.6 48 0.0016 27.1 4.3 85 46-135 2-92 (257)
456 3rqi_A Response regulator prot 31.5 1.6E+02 0.0056 22.0 11.4 110 47-174 4-122 (184)
457 3uxy_A Short-chain dehydrogena 31.5 43 0.0015 27.7 4.1 34 46-79 24-58 (266)
458 2vk2_A YTFQ, ABC transporter p 31.4 2.1E+02 0.0073 23.3 9.5 46 93-138 179-230 (306)
459 2jah_A Clavulanic acid dehydro 31.4 54 0.0019 26.5 4.6 72 47-123 4-80 (247)
460 1t0b_A THUA-like protein; treh 31.3 71 0.0024 26.6 5.4 63 64-137 36-106 (252)
461 1p9l_A Dihydrodipicolinate red 31.3 89 0.003 25.9 5.9 63 180-250 2-68 (245)
462 3miz_A Putative transcriptiona 31.1 32 0.0011 28.5 3.2 88 50-137 131-235 (301)
463 3dbi_A Sugar-binding transcrip 31.1 38 0.0013 28.6 3.7 89 50-138 181-281 (338)
464 3ijr_A Oxidoreductase, short c 31.0 58 0.002 27.2 4.8 148 46-208 43-225 (291)
465 2nm0_A Probable 3-oxacyl-(acyl 31.0 49 0.0017 27.1 4.3 34 45-78 16-50 (253)
466 2jgn_A DBX, DDX3, ATP-dependen 30.7 98 0.0034 23.9 5.9 24 181-204 50-73 (185)
467 2qvg_A Two component response 30.6 1.4E+02 0.0048 20.9 9.7 112 49-173 6-131 (143)
468 3rpe_A MDAB, modulator of drug 30.5 33 0.0011 28.1 3.1 53 64-122 51-110 (218)
469 2wsb_A Galactitol dehydrogenas 30.5 67 0.0023 25.7 5.0 83 46-135 7-94 (254)
470 3ged_A Short-chain dehydrogena 30.5 1.9E+02 0.0065 23.8 7.9 140 50-209 2-175 (247)
471 1ykg_A SIR-FP, sulfite reducta 30.4 48 0.0016 25.3 3.9 36 100-135 54-100 (167)
472 2xdq_B Light-independent proto 30.4 1.5E+02 0.0052 27.2 7.9 168 63-248 186-372 (511)
473 3nra_A Aspartate aminotransfer 30.3 1.3E+02 0.0046 25.6 7.3 74 49-126 125-213 (407)
474 2z1n_A Dehydrogenase; reductas 30.1 64 0.0022 26.2 4.9 84 47-135 4-94 (260)
475 1iy8_A Levodione reductase; ox 30.0 57 0.0019 26.7 4.5 74 46-123 9-88 (267)
476 1eo1_A Hypothetical protein MT 30.0 78 0.0027 22.9 4.9 48 119-173 59-106 (124)
477 3pxx_A Carveol dehydrogenase; 30.0 55 0.0019 26.9 4.5 33 47-79 7-40 (287)
478 1dih_A Dihydrodipicolinate red 30.0 32 0.0011 29.1 3.0 75 180-259 7-101 (273)
479 3ax6_A Phosphoribosylaminoimid 29.8 1.2E+02 0.004 26.3 6.8 29 51-79 2-30 (380)
480 1d7o_A Enoyl-[acyl-carrier pro 29.8 62 0.0021 26.9 4.8 34 46-79 4-40 (297)
481 3lec_A NADB-rossmann superfami 29.7 1.3E+02 0.0044 24.7 6.6 28 179-206 118-145 (230)
482 3gfs_A FMN-dependent NADPH-azo 29.6 25 0.00085 27.1 2.1 22 193-214 57-78 (174)
483 2vyc_A Biodegradative arginine 29.6 2E+02 0.0069 27.8 9.0 80 51-139 1-96 (755)
484 4fc7_A Peroxisomal 2,4-dienoyl 29.6 83 0.0029 25.9 5.6 86 46-135 23-114 (277)
485 1qv9_A F420-dependent methylen 29.4 60 0.0021 27.3 4.4 50 102-160 64-121 (283)
486 3iwh_A Rhodanese-like domain p 29.4 57 0.002 22.9 3.9 28 51-78 58-85 (103)
487 3snk_A Response regulator CHEY 29.3 1.4E+02 0.005 20.7 7.3 109 49-175 13-131 (135)
488 3n74_A 3-ketoacyl-(acyl-carrie 29.3 61 0.0021 26.2 4.6 83 46-135 5-92 (261)
489 1yxm_A Pecra, peroxisomal tran 29.2 74 0.0025 26.4 5.2 34 46-79 14-48 (303)
490 3f1l_A Uncharacterized oxidore 29.2 68 0.0023 26.0 4.8 75 46-124 8-89 (252)
491 3gvc_A Oxidoreductase, probabl 29.2 60 0.002 27.0 4.6 70 47-123 26-99 (277)
492 2o2s_A Enoyl-acyl carrier redu 29.2 60 0.002 27.4 4.6 34 46-79 5-41 (315)
493 4ehi_A Bifunctional purine bio 29.1 1.5E+02 0.0051 27.7 7.4 126 109-249 32-180 (534)
494 3u7q_B Nitrogenase molybdenum- 29.1 77 0.0026 29.5 5.7 138 63-209 238-395 (523)
495 3lf2_A Short chain oxidoreduct 28.8 66 0.0023 26.3 4.7 86 46-135 4-96 (265)
496 4hp8_A 2-deoxy-D-gluconate 3-d 28.7 57 0.0019 27.2 4.3 33 47-79 6-39 (247)
497 3un6_A Hypothetical protein sa 28.7 1.1E+02 0.0038 25.8 6.3 66 45-115 148-215 (341)
498 4dmm_A 3-oxoacyl-[acyl-carrier 28.6 57 0.0019 26.9 4.3 74 46-123 24-102 (269)
499 3ly1_A Putative histidinol-pho 28.5 95 0.0032 26.0 5.9 61 49-112 91-151 (354)
500 1mkz_A Molybdenum cofactor bio 28.4 63 0.0021 25.2 4.3 49 62-114 30-81 (172)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-41 Score=296.88 Aligned_cols=211 Identities=18% Similarity=0.172 Sum_probs=184.9
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (262)
.||.|++||+||+..+.+++.+.|+++|++++.+|+|++++.++...++..+..+++||||||||+|||++|++.+...+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 47899999999999889999999999999999999999999887667777777788999999999999999999987765
Q ss_pred C--CCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh--h-CCCCccEEEEEccCCChhhHHHHHHhC
Q 024773 126 T--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (262)
Q Consensus 126 ~--~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--~-~~~~g~~vL~~~g~~~~~~L~~~L~~~ 200 (262)
. .+++++|||++|+++|+++ |+.+++.|+.+++++|++.+. + ....|+++|+++|+.+++.|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 4 3589999999999999999 999999998999999999886 3 244689999999999999999999999
Q ss_pred CCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhccc--CCCCCeEEEECC
Q 024773 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIAG 262 (262)
Q Consensus 201 G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~--~~~~~~i~~IGp 262 (262)
|++|+++++|++.+.+....++.+.+ +.+|+|+||||+++++|++.+++. .+.+.+++||||
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~ 221 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWPEIGRLPLFVPSP 221 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGGGHHHHTTSCEEESSH
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECH
Confidence 99999999999999887655554444 489999999999999999998764 246799999996
No 2
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.5e-41 Score=297.56 Aligned_cols=211 Identities=19% Similarity=0.189 Sum_probs=177.9
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (262)
..+.|++||||||..+++++.+.|+++|++++.+|++++++.++...+...+..++.||||||||+|||++|++.+...+
T Consensus 10 ~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~ 89 (269)
T 3re1_A 10 MDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVW 89 (269)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999999999999999999887666777777788999999999999999999988765
Q ss_pred CC--CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh--h-CCCCccEEEEEccCCChhhHHHHHHhC
Q 024773 126 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (262)
Q Consensus 126 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--~-~~~~g~~vL~~~g~~~~~~L~~~L~~~ 200 (262)
.+ +++++|||++|+++|+++ |+.+++.|+.+++++|++.+. + ....|++||++||+.+++.|.+.|+++
T Consensus 90 ~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~ 163 (269)
T 3re1_A 90 PQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRER 163 (269)
T ss_dssp SSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHC
Confidence 43 589999999999999999 999999888899999998876 3 234689999999999999999999999
Q ss_pred CCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhccc--CCCCCeEEEECC
Q 024773 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIAG 262 (262)
Q Consensus 201 G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~--~~~~~~i~~IGp 262 (262)
|++|+++++|++.+.+...+.+.+.+ +.+|+|+||||+++++|++.+++. .+.+.+++||||
T Consensus 164 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~ 229 (269)
T 3re1_A 164 GVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSWPDLAGLPLFVPSP 229 (269)
T ss_dssp TCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGHHHHTTSCEEESSH
T ss_pred CCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECH
Confidence 99999999999999876544443333 489999999999999999998764 246899999996
No 3
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=4.6e-41 Score=298.18 Aligned_cols=214 Identities=16% Similarity=0.083 Sum_probs=173.8
Q ss_pred CCCCccchhccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE
Q 024773 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI 106 (262)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~I 106 (262)
.+++++|||. +|+.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.+...+.++ +.||||
T Consensus 19 ~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d~l 88 (286)
T 3d8t_A 19 DSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVDLF 88 (286)
T ss_dssp ----------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCSEE
T ss_pred cCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCCEE
Confidence 4678999999 999999999999987 89999999999999999999999997 556677777666 479999
Q ss_pred EEeCHHHHHHHHHHHHHcCCC------CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCcc-
Q 024773 107 IITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC- 179 (262)
Q Consensus 107 iFTS~~aV~~f~~~l~~~~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~- 179 (262)
||||+|||++|++.+.+.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+
T Consensus 89 ifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~ 157 (286)
T 3d8t_A 89 LATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRG 157 (286)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----CCS
T ss_pred EEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----CCc
Confidence 999999999999998876544 689999999999999999 99999999 8999999998765 68
Q ss_pred EEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccC-----C
Q 024773 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----Q 252 (262)
Q Consensus 180 ~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~-----~ 252 (262)
++|+++|+.+++.|.+.|+++|+.|+++++|++.+......++.+.+ +.+|+|+|||+++|++|++.+++.. +
T Consensus 158 ~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~~~~~~~~~~~~~~~~l 237 (286)
T 3d8t_A 158 VAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREAL 237 (286)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHH
T ss_pred eEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHHhccchhhHh
Confidence 99999999999999999999999999999999995432223343444 4799999999999999999986521 3
Q ss_pred C-CCeEEEECC
Q 024773 253 W-SNSVACIAG 262 (262)
Q Consensus 253 ~-~~~i~~IGp 262 (262)
. +.+++||||
T Consensus 238 ~~~~~i~aIG~ 248 (286)
T 3d8t_A 238 NTRVKALAVGR 248 (286)
T ss_dssp TTTSEEEEESH
T ss_pred hcCCEEEEECH
Confidence 4 789999996
No 4
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=3.6e-40 Score=285.06 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=176.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~ 129 (262)
||+||+|||..+++.+.+.|+++|++++.+|+|++++.++.+ ..+..+++||||||||+|||++|++.+.. .+.+.
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~---~~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQ---AQLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCH---HHHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHH---HHHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 799999999999999999999999999999999999986543 23344578999999999999999998763 35678
Q ss_pred EEEEeChhHHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEe
Q 024773 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~ 208 (262)
+++|||++|+++|+++ |+.++++|+.+ ++++|++.+......|+++|+++|+.+++.|.+.|+++|++|++++
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999987 9999998776544578999999999999999999999999999999
Q ss_pred eeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEECC
Q 024773 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIAG 262 (262)
Q Consensus 209 vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IGp 262 (262)
+|++.+.+...+++.+.+ +.+|+|+||||+++++|++.++... +.+.+++||||
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~ 209 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSA 209 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSH
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECH
Confidence 999999887766555544 3899999999999999999987642 34789999996
No 5
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=8.9e-39 Score=283.41 Aligned_cols=211 Identities=16% Similarity=0.195 Sum_probs=176.5
Q ss_pred cCCCCCCCeEEEeCCC-CCh---HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 44 ASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~-~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
-..++.|++|++||+. .+. +.+.+.|+++|++++.+|++++++.. .+.+...+..+..||||||||+|||++|++
T Consensus 15 ~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~~~ 93 (286)
T 1jr2_A 15 GHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAAEL 93 (286)
T ss_dssp -------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHHHH
T ss_pred cchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHHHH
Confidence 3488999999999997 667 99999999999999999999999864 455666666678899999999999999999
Q ss_pred HHHHcCC------------CCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC
Q 024773 120 AWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA 187 (262)
Q Consensus 120 ~l~~~~~------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~ 187 (262)
.+.+.+. .+.+++|||++|+++|+++ |+.+ +.|+.+++++|++.+......|+++|++||+
T Consensus 94 ~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~ 166 (286)
T 1jr2_A 94 CLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPCGN 166 (286)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEESC
T ss_pred HHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEECCh
Confidence 8876542 2679999999999999999 9998 7899999999999998765568999999999
Q ss_pred CChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc---CCCCEEEEeCHHHHHHHHHHhccc---CCCCCeEEEEC
Q 024773 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDT---EQWSNSVACIA 261 (262)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~---~~~~~~i~~IG 261 (262)
.+++.|.+.|+++|+.|+++++|++.+.....+.+.+.+ +.+|+|+||||++|++|++.+++. .+.+.+++|||
T Consensus 167 ~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~aIG 246 (286)
T 1jr2_A 167 LKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIG 246 (286)
T ss_dssp GGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESS
T ss_pred hhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhccccccCCEEEEEC
Confidence 999999999999999999999999998765443443333 579999999999999999988651 24578999999
Q ss_pred C
Q 024773 262 G 262 (262)
Q Consensus 262 p 262 (262)
|
T Consensus 247 ~ 247 (286)
T 1jr2_A 247 P 247 (286)
T ss_dssp H
T ss_pred H
Confidence 6
No 6
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=7.4e-39 Score=279.82 Aligned_cols=204 Identities=17% Similarity=0.105 Sum_probs=173.7
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHHc
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKEA 124 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS~~aV~~f~~~l~~~ 124 (262)
+|+.|++||+||+.. .+.+.+.|+++|++++.+|+|++++. +.+.+...+.++ +.||||||||+|||++|++.+.+.
T Consensus 4 ~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~ 81 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKAL 81 (261)
T ss_dssp ----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHh
Confidence 789999999999987 89999999999999999999999998 666666676666 579999999999999999998876
Q ss_pred CCC------CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCcc-EEEEEccCCChhhHHHHH
Q 024773 125 GTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEGL 197 (262)
Q Consensus 125 ~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~-~vL~~~g~~~~~~L~~~L 197 (262)
+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+ ++|+++|+.+++.|.+.|
T Consensus 82 ~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~L 150 (261)
T 1wcw_A 82 GLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENAL 150 (261)
T ss_dssp TCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHHH
T ss_pred CchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHHH
Confidence 543 579999999999999999 99999999 9999999998764 68 999999999999999999
Q ss_pred HhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccC-----CC-CCeEEEECC
Q 024773 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----QW-SNSVACIAG 262 (262)
Q Consensus 198 ~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~-----~~-~~~i~~IGp 262 (262)
+++|++|.++++|++.+......++.+.+ +.+|+|+|||+++|++|++.+++.. +. +.+++||||
T Consensus 151 ~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~l~~~~~~~aIG~ 223 (261)
T 1wcw_A 151 AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGR 223 (261)
T ss_dssp HHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESH
T ss_pred HHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHhhccchhHHhhcCCEEEEECH
Confidence 99999999999999985432223333334 4899999999999999999986521 34 789999996
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.98 E-value=4.3e-32 Score=233.28 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=139.6
Q ss_pred cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC----CCCcEEEEeChhHHHHHHHhhhhcC
Q 024773 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (262)
Q Consensus 75 ~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~----~~~~~i~aVG~~Ta~~L~~~~~~~~ 150 (262)
.++.+|+++++|.+.. .++++||||||||+|||++|++.+.+.+ +.+.+++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 6889999999998652 2678999999999999999998775322 24789999999999999999
Q ss_pred CCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CC
Q 024773 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS 228 (262)
Q Consensus 151 ~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~ 228 (262)
|+.++++|+.+++++|++.+.+.. .|+++|++||+.+++.|.+.|+++|++|+++++|++.+.+... +..+.+ +.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTL-SEQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCH-HHHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccH-HHHHHHhcCC
Confidence 999999999999999999887543 5789999999999999999999999999999999999988654 334444 47
Q ss_pred CCEEEEeCHHHHHHHHHHhcccCCCCCeEEEECC
Q 024773 229 IPVVAVASPSAVRSWVNLISDTEQWSNSVACIAG 262 (262)
Q Consensus 229 ~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IGp 262 (262)
+|+|+||||+++++|++.++. ..+.+++||||
T Consensus 162 ~d~v~ftS~s~v~~~~~~~~~--~~~~~~~aIG~ 193 (229)
T 3p9z_A 162 KSILIFTAISHAKAFLHYFEF--LENYTAISIGN 193 (229)
T ss_dssp TCEEEECSHHHHHHHHHHSCC--CTTCEEEESSH
T ss_pred CeEEEEECHHHHHHHHHHhCc--ccCCEEEEECH
Confidence 999999999999999999863 45789999996
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.74 E-value=1.5e-17 Score=142.48 Aligned_cols=118 Identities=16% Similarity=0.055 Sum_probs=102.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (262)
+.|++||++|+....+.+.+.|+++|++|..+|+|++++.+........+ ..+.+|+|+|||+++|++|++.+. ...
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 46899999999999999999999999999999999999986544444444 457899999999999999998763 235
Q ss_pred CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC
Q 024773 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (262)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (262)
+.+++|||+.|+++|+++ |++++ +|+.++.++|++.+.+..
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l~ 225 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSLR 225 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHTC
T ss_pred CCEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHHh
Confidence 789999999999999999 99974 799999999999988754
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.74 E-value=1.1e-17 Score=147.70 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=105.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-- 124 (262)
..|++||++|+....+.+.+.|+++|++|..+|+|++++.++. +.+...+...+.+|+|+|||+++|++|++.+.+.
T Consensus 155 ~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 155 SSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred cCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 4589999999998899999999999999999999999987653 3444455444689999999999999999988652
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC
Q 024773 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (262)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (262)
.+.+++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+..
T Consensus 235 ~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 235 DNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 234789999999999999999 999988999999999999987654
No 10
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.72 E-value=1.4e-17 Score=145.93 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=106.0
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 024773 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (262)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (262)
...|++||++|+....+.+.+.|+++|++|..+|+|++++... .+.+...+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRV-EVERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHH-HHTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHH-HcCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998753 33444444 23679999999999999999987653
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCC
Q 024773 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 176 (262)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~ 176 (262)
...+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.++..
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHhc
Confidence 234789999999999999999 9999899999999999999988754
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.72 E-value=3.3e-17 Score=142.14 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=104.5
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 024773 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (262)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (262)
...|++||++|+....+.+.+.|+++|++|..+++|++++.+. .+.+...+ ..+.+|+|+|||+++|++|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998764 34455555 34689999999999999999988653
Q ss_pred -CCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
...+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 234789999999999999999 9999899999999999998865
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.69 E-value=3.9e-17 Score=141.97 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=98.7
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC--
Q 024773 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG-- 125 (262)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~-- 125 (262)
|+ +||++|+....+.+.+.|+++|++|..+|+|++++..+ .+.+...+ ..+.+|+|+|||+++|++|++.+.+.+
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAL-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHH-HHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 89 99999999999999999999999999999999996432 12333333 236799999999999999998764321
Q ss_pred ---CC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 126 ---TP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 126 ---~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. +.+++|||+.|+++|+++ |+.++++|+.++.++|++.|.++
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 23 678999999999999999 99998889999999999988754
No 13
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.69 E-value=9.2e-17 Score=141.83 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=99.3
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC--
Q 024773 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG-- 125 (262)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~-- 125 (262)
|+ +||++|+....+.+.+.|+++|++|..+|+|++++..+ .+++...+ ..+.+|+|+|||+++|++|++.+.+.+
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999996432 12333334 346799999999999999998764321
Q ss_pred ---CC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 126 ---TP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 126 ---~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. +.+++|||+.|+++|+++ |+.++++|+.++.++|++.|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 24 689999999999999999 99998889999999999988754
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.68 E-value=8.6e-17 Score=138.27 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=101.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 024773 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (262)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~ 125 (262)
...|++||++|+....+.+.+.|+++|++|..+++|++++.+. .+.+...+. .+.+|+|+|||+++|++|++.+....
T Consensus 117 ~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~-~~~~d~v~ftS~s~v~~~~~~~~~~~ 195 (240)
T 3mw8_A 117 QVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQ-SFGIDTIVVTSGEVLENLINLVPKDS 195 (240)
T ss_dssp CCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHH-HHTCCEEECCSHHHHHHHHHHSCGGG
T ss_pred cCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHH-hCCCCEEEEcCHHHHHHHHHHcchHH
Confidence 4679999999999999999999999999999999999998754 344444442 25799999999999999999875432
Q ss_pred ---CCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 126 ---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
..+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.
T Consensus 196 ~~~l~~~~~~aiG~~ta~~l~~~------G~~~~~va~~p~~~~ll~al~ 239 (240)
T 3mw8_A 196 FAWLRDCHIIVPSARVETQARKK------GLRRVTNAGAANQAAVLDALG 239 (240)
T ss_dssp HHHHHHSEEEESSHHHHHHHHHT------TCCCEEECSSSSHHHHHHHHT
T ss_pred HHHHhCCCEEEECHHHHHHHHHc------CCCceEeCCCCCHHHHHHHhh
Confidence 13679999999999999999 999989999999999998763
No 15
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=96.75 E-value=0.0061 Score=52.30 Aligned_cols=178 Identities=11% Similarity=0.076 Sum_probs=103.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+.+.....-. ......+.+.+. -..+|+||+.+...-...++.+.+. +++++.+|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~-~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~----~ 99 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEP---GEKYQSLIHLVE-TRRVDALIVAHTQPEDFRLQYLQKQ---NFPFLALGRSH----L 99 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECT---TCCCHHHHHHHH-HTCCSEEEECSCCSSCHHHHHHHHT---TCCEEEESCCC----C
T ss_pred HHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHHH-cCCCCEEEEeCCCCChHHHHHHHhC---CCCEEEECCCC----C
Confidence 35567778899988765422 222233333442 2579999998764333344444443 67899998641 1
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
.. ++.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++.....
T Consensus 100 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 170 (294)
T 3qk7_A 100 PK------PYAW-FDFDNHAGASLAVKRLLEL--GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPT 170 (294)
T ss_dssp SS------CCEE-EEECHHHHHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSS
T ss_pred CC------CCCE-EEcChHHHHHHHHHHHHHC--CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCC
Confidence 22 3332 22222 2345555666664 3478999988753 33456788888887654333333222
Q ss_pred CCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 216 HHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 216 ~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.....+ +.+.+ ..+|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 171 RPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 111111 22222 3789999999888888888887765 3467777664
No 16
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.71 E-value=0.0073 Score=51.59 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=103.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++.....-.-. .....+...+. -..+|+||+.+...-...++.+.+. +++++++|....
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~~---- 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYILE-TGSADGVIISKIEPNDPRVRFMTER---NMPFVTHGRSDM---- 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHHH-HTCCSEEEEESCCTTCHHHHHHHHT---TCCEEEESCCCS----
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHHH-cCCccEEEEecCCCCcHHHHHHhhC---CCCEEEECCcCC----
Confidence 3445666789888766432211 11122333332 2679999998655433444555443 678888886421
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
.. ++.. +.... ..+..+++.|.+.. .+++.++.|... ..-+.+.|++.|..+....++.....
T Consensus 101 ~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~ 171 (288)
T 3gv0_A 101 GI------EHAF-HDFDNEAYAYEAVERLAQCG--RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETP 171 (288)
T ss_dssp SC------CCEE-EEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSC
T ss_pred CC------CCcE-EEeCcHHHHHHHHHHHHHCC--CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccc
Confidence 12 3322 22222 23455566666653 478999988754 33456788889887755444332221
Q ss_pred CCCh-HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 216 HHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 216 ~~~~-~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.... +.+.+.+ ..+|+|+..+-..+..+++.+.+.+ ..++.|++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d 224 (288)
T 3gv0_A 172 LEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQ 224 (288)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 1111 1223333 2689999999999888888888765 3467777664
No 17
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.51 E-value=0.031 Score=47.52 Aligned_cols=182 Identities=8% Similarity=-0.019 Sum_probs=105.3
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
-+.+.++++ |+.+......... .+.+.....+. .-..+|+||+.... +...+++.+.+. ++++++++...
T Consensus 30 gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 104 (304)
T 3gbv_A 30 GIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSCC
T ss_pred HHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 345566777 8888765543221 12222222222 23679999998754 445555655554 67899998543
Q ss_pred HHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEc----cCCC-------hhhHHHHHHhCCCeeeE
Q 024773 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVVR 206 (262)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~----g~~~-------~~~L~~~L~~~G~~v~~ 206 (262)
. .. .++. .+.... ..+..+++.|.+..-.+++++++. |... ..-+.+.|+++|..+..
T Consensus 105 ~----~~-----~~~~-~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 105 K----DA-----PPLA-FFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp T----TS-----CCSE-EEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C----CC-----CceE-EEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 2 11 0122 222322 234555566666543347899998 4322 34466788888887776
Q ss_pred EeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 207 LNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 207 i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
..++..........+ +.+.+ .++++|+..+-. +...++.+.+.+..++.|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d 232 (304)
T 3gbv_A 175 LELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYD 232 (304)
T ss_dssp EEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEES
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeC
Confidence 666554443333322 22223 378999999888 7777887777655567777664
No 18
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.47 E-value=0.016 Score=49.35 Aligned_cols=177 Identities=8% Similarity=-0.019 Sum_probs=102.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++..+..- .+.+.....++. -..+|+||+.+.......++.+ ...+++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~---~~~~iPvV~~~~~~~-- 98 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTA-----EDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE---LPKTFPIVAVNRELR-- 98 (291)
T ss_dssp HHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS---SCTTSCEEEESSCCC--
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh---hccCCCEEEEecccC--
Confidence 4555677889888754321 122211222221 2579999998876533333333 234789999986532
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....+....
T Consensus 99 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 99 --IP------GCGA-VLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp --CT------TCEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 12 4432 22222 3345555666664 3478999988764 334667888888876543332222
Q ss_pred cCC-CChHHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVH-HVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~-~~~~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
... ...+.+.+.+ ..+|+|+..+-..+..+++.+.+.+ ..++.|++++
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 222 2222333334 3789999999999888888887765 2467777764
No 19
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.46 E-value=0.028 Score=47.63 Aligned_cols=192 Identities=10% Similarity=0.039 Sum_probs=105.0
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 024773 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~ 118 (262)
.++|.+.-+.... ..+.+.++++|+++..... ..+.+.....++. ...+|+||+.... .....+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 3456555444322 3355567788988876532 1222211122221 2579999988653 556666
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------h
Q 024773 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------S 190 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~ 190 (262)
+.+.+. ++++++++.... . ++.. +.... ..+..+++.|.+.....++++++.|... .
T Consensus 80 ~~~~~~---~iPvV~~~~~~~-----~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 80 QKINDA---GIPLFTVDTATP-----H------AINN-TTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHHT---TCCEEEESCCCT-----T------CSEE-EEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHHC---CCcEEEecCCCC-----C------cCce-EecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 666554 678999986431 2 3332 22222 3345566666663223478999988654 2
Q ss_pred hhHHHHHHhC-CCee-eEEeeeccccCCCCh-H---HHHHHcC---CCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 191 NEIEEGLSNR-GFEV-VRLNTYTTEPVHHVD-Q---TVLKQAL---SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 191 ~~L~~~L~~~-G~~v-~~i~vY~~~~~~~~~-~---~~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
.-+.+.|++. |+++ .+..++......... + ++++.-. ++|+|+..+-..+...++.+.+.+..++.|++++
T Consensus 145 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vvg~d 224 (291)
T 3l49_A 145 DQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVD 224 (291)
T ss_dssp HHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCCCCeEEEEec
Confidence 3355677777 5552 222121111100000 1 1222224 6899999999998888888887654466666553
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.32 E-value=0.016 Score=49.63 Aligned_cols=194 Identities=8% Similarity=-0.020 Sum_probs=108.6
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 024773 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~ 118 (262)
+++|.+.-+.... .-+.+.++++|+++..+. ....+.+...+.+.. -..+|+||+.+.. +....+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4666555444332 334556677898887521 111122221222221 1479999998543 334455
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC------h
Q 024773 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------S 190 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~ 190 (262)
+.+.+. ++++++++.... .. + +.. +.... ..+..+++.|.+.....+++.++.|... .
T Consensus 80 ~~~~~~---~iPvV~~~~~~~----~~------~~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~ 145 (305)
T 3g1w_A 80 NKAVDA---GIPIVLFDSGAP----DS------HAHSF-LGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERT 145 (305)
T ss_dssp HHHHHT---TCCEEEESSCCT----TS------CCSCE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHH
T ss_pred HHHHHC---CCcEEEECCCCC----CC------ceeEE-ECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHH
Confidence 555554 678999986432 11 1 222 22322 2345555666665323578999988743 2
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEEC
Q 024773 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIA 261 (262)
Q Consensus 191 ~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~IG 261 (262)
.-+.+.|++.|..+....++..........+ +.+.+ ..+++|+..+-..+-..++.+.+.+. .++.|++++
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d 221 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFD 221 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeC
Confidence 3366778888887776666554332211111 22222 37899999998888888888877653 367777764
No 21
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.16 E-value=0.038 Score=47.06 Aligned_cols=177 Identities=7% Similarity=0.006 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
-+.+.++++|+++...+. ..+.+.....+.. -..+|+||+.+...-...++.+.+. +++++++|....
T Consensus 37 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSNS-----DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRS---PVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHS---SSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEccccC--
Confidence 345567788998764321 1222211122221 2579999997642223334444433 678999986432
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCC-C-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~-~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
.. ++.. +.... ..+...++.|.+.. .+++.++.|.. . ..-+.+.|++.|..+....++..
T Consensus 107 --~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 175 (289)
T 2fep_A 107 --QE------ETPS-VAIDYEQAIYDAVKLLVDKG--HTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEG 175 (289)
T ss_dssp --TC------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeC
Confidence 12 3322 22222 23455556666643 47899998875 3 23466788889887654333332
Q ss_pred ccCCCChHH-HHHHcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 213 EPVHHVDQT-VLKQAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~~~-~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
........+ +.+.+. .+|+|+..+-..+-..++.+.+.+ ..++.|++++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 176 DYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp CSCHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 211111112 223232 689999999988888888887654 2466676653
No 22
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.15 E-value=0.03 Score=47.04 Aligned_cols=177 Identities=10% Similarity=0.048 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++.... . ..+.+.....+. ....+|+||+.+...-+..++.+.+. +++++.++....
T Consensus 24 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGY---S--DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS---NTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEE---C--TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH---TCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEeeccC--
Confidence 34556778898765432 1 112221112222 13579999987643223344444443 578888886321
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|+++|..+....++...
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 162 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEA 162 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCC
Confidence 12 3322 22222 2344555666654 2478999988743 234567888898876554444322
Q ss_pred cCCCChHH-HHHHcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVHHVDQT-VLKQAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~~~-~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.......+ +.+.+. .+|+|+.++-..+..+++.+.+.+ ..++.|++++
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 217 (275)
T 3d8u_A 163 PSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLE 217 (275)
T ss_dssp CCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 11111111 222232 589999999988888888887664 2466676654
No 23
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.04 E-value=0.022 Score=48.31 Aligned_cols=178 Identities=8% Similarity=0.028 Sum_probs=101.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++.....- .+.+.....+. .-..+|+||+.....-....+.+.+. +++++.+|....
T Consensus 34 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 103 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQ---NFPFVLIGKPYD-- 103 (292)
T ss_dssp HHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHT---TCCEEEESCCSS--
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHC---CCCEEEECCCCC--
Confidence 3556677889887754321 11111112221 23679999997655434455555444 678888886422
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. .++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|..+....++...
T Consensus 104 --~~-----~~~~~-V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 173 (292)
T 3k4h_A 104 --RK-----DEITY-VDNDNYTAAREVAEYLISLG--HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFD 173 (292)
T ss_dssp --CT-----TTSCE-EECCHHHHHHHHHHHHHHTT--CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred --CC-----CCCCE-EEECcHHHHHHHHHHHHHCC--CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecC
Confidence 11 01222 22222 23455566666643 478999988754 234667888888876544343322
Q ss_pred cCCCCh-HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~-~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
...... +.+.+.+ ..+|+|+.++-..+...++.+.+.+ ..++.|++++
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 174 FSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 211111 1122323 2789999999988888888888765 2567777764
No 24
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=96.04 E-value=0.034 Score=47.37 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=101.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++.....-. ..+..+..+.+ .-..+|+||+.+...-....+.+.+ +++++.+|....
T Consensus 32 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~~~----~iPvV~i~~~~~---- 99 (289)
T 3k9c_A 32 QIYAAATRRGYDVMLSAVAP---SRAEKVAVQAL-MRERCEAAILLGTRFDTDELGALAD----RVPALVVARASG---- 99 (289)
T ss_dssp HHHHHHHHTTCEEEEEEEBT---TBCHHHHHHHH-TTTTEEEEEEETCCCCHHHHHHHHT----TSCEEEESSCCS----
T ss_pred HHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHH-HhCCCCEEEEECCCCCHHHHHHHHc----CCCEEEEcCCCC----
Confidence 35566778899887654321 11111111222 2367999999875433334444432 678999986432
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeEEeeeccccCC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY~~~~~~ 216 (262)
.. ++.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++ .....
T Consensus 100 ~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~~ 169 (289)
T 3k9c_A 100 LP------GVGA-VRGDDVAGITLAVDHLTEL--GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVT-GGTTE 169 (289)
T ss_dssp ST------TSEE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEEC-CCSSH
T ss_pred CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEE-CCCCH
Confidence 22 4432 22222 3345555666664 3478999988653 344667889999886653333 22211
Q ss_pred CChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 217 HVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 217 ~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
....+ +.+.+ ..+|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 170 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 170 TEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 11111 22223 3789999999998888888887765 2467777653
No 25
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.04 E-value=0.056 Score=45.72 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=101.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++.....-.. .....++.+.+ .-..+|+||+.+...-.. ... +....+++++++|...
T Consensus 33 gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~~~-~~~~~~iPvV~~~~~~----- 101 (289)
T 3g85_A 33 GLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--EYL-NKASLTLPIILFNRLS----- 101 (289)
T ss_dssp HHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--HHH-HHCCCSSCEEEESCCC-----
T ss_pred HHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--HHH-HhccCCCCEEEECCCC-----
Confidence 455667788999876533221 11111111112 235799999987654331 111 1223478999999631
Q ss_pred HhhhhcCCCCceeecCC-CCCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 144 EVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~-~~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
- ++.. +... ...+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++.....
T Consensus 102 -~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~ 171 (289)
T 3g85_A 102 -N------KYSS-VNVDNYKMGEKASLLFAKK--RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENS 171 (289)
T ss_dssp -S------SSEE-EEECHHHHHHHHHHHHHHT--TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSS
T ss_pred -C------CCCE-EEeCHHHHHHHHHHHHHHc--CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCC
Confidence 2 3332 2222 23455666677664 3478999988753 33466788889887655444332221
Q ss_pred CCChH-HHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 216 HHVDQ-TVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 216 ~~~~~-~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
..... .+.+.+ ..+|+|+.++-..+...++.+.+.+ ..++.|++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 172 IHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 11111 223333 2689999999999888888888765 3577788765
No 26
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=95.97 E-value=0.049 Score=46.04 Aligned_cols=178 Identities=10% Similarity=-0.017 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
-+.+.++++|+++..... ..+.+.....+.. ...+|+||+.+...-...++.+.+. .++++++++....
T Consensus 42 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~-- 112 (296)
T 3brq_A 42 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA--HSQPIMVLNRRLR-- 112 (296)
T ss_dssp HHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHT--CSSCEEEESCCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCCEEEEccccC--
Confidence 345566788987764321 1122211122221 2579999987643222333444441 2678888885421
Q ss_pred HHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +....+ .+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++...
T Consensus 113 --~~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 181 (296)
T 3brq_A 113 --KN------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGK 181 (296)
T ss_dssp --SS------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCC
T ss_pred --CC------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 11 2221 222222 234555666664 2478999988753 234567888888876544344322
Q ss_pred cCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.......+ +.+.+ ..+|+|+..+-..+..+++.+.+.+ ..++.|++++
T Consensus 182 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 182 WTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp SSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 11111111 22223 2689999999988888888887654 2466777654
No 27
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=95.82 E-value=0.038 Score=47.24 Aligned_cols=196 Identities=14% Similarity=0.076 Sum_probs=107.4
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 024773 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~ 118 (262)
+.+|.+.-+.... .-+.+.++++|+++.....-. ..+.+.....+.. ...+|+||+.... +....+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 79 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPG---ANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSL 79 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSS---SCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCC---cCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3455555444322 234556677898887543210 0122221122221 2579999987543 335555
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------h
Q 024773 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------S 190 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~ 190 (262)
+.+.+. ++++++++......-... .+.. +.... ..+..+++.|.+.....++++++.|... .
T Consensus 80 ~~~~~~---giPvV~~~~~~~~~~~~~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~ 149 (297)
T 3rot_A 80 QRANKL---NIPVIAVDTRPKDKTKNP------YLVF-LGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRA 149 (297)
T ss_dssp HHHHHH---TCCEEEESCCCSCTTTSC------CSCE-EECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHH
T ss_pred HHHHHC---CCCEEEEcCCCccccccC------cceE-EccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHH
Confidence 555554 678888885432100001 1221 22322 2345555666665433578999988754 3
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CC-CCeEEEEC
Q 024773 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QW-SNSVACIA 261 (262)
Q Consensus 191 ~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~-~~~i~~IG 261 (262)
+-+.+.|++.|+++..+.. ........+ +.+.+ ..+++|+..+-..+...++.+.+.+ .. ++.|++++
T Consensus 150 ~Gf~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D 225 (297)
T 3rot_A 150 YGIKTILQDKGIFFEELDV---GTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFD 225 (297)
T ss_dssp HHHHHHHHHTTCEEEEEEC---CSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHhcCCeEEEeec---CCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeC
Confidence 4567789898887755431 111111111 22212 4789999999999888888887765 23 77887765
No 28
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=95.75 E-value=0.066 Score=45.44 Aligned_cols=179 Identities=8% Similarity=0.029 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++.....-. ......+..+.+ ....+|+||+.+...-...++.+.+. +++++.+|....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~---- 98 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSE--DRSQIDIYRDLI-RSGNVDGFVLSSINYNDPRVQFLLKQ---KFPFVAFGRSNP---- 98 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCS--STTCCHHHHHHH-HTTCCSEEEECSCCTTCHHHHHHHHT---TCCEEEESCCST----
T ss_pred HHHHHHHHcCCEEEEEeCCC--chHHHHHHHHHH-HcCCCCEEEEeecCCCcHHHHHHHhc---CCCEEEECCcCC----
Confidence 34566778899876543211 111112222223 23679999997643212333444443 678999986432
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
.. ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|..+....++.....
T Consensus 99 ~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~ 169 (287)
T 3bbl_A 99 DW------DFAW-VDIDGTAGTRQAVEYLIGRG--HRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGT 169 (287)
T ss_dssp TC------CCCE-EEECHHHHHHHHHHHHHHHT--CCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSS
T ss_pred CC------CCCE-EEeccHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCC
Confidence 12 3322 22222 23445556666542 478999988643 23456788888877654333332211
Q ss_pred CCCh-HHHHHHcC-----CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 216 HHVD-QTVLKQAL-----SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 216 ~~~~-~~~~~~l~-----~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.... ..+.+.+. .+|+|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~d 224 (287)
T 3bbl_A 170 FEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFD 224 (287)
T ss_dssp HHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 1111 11222233 579999999888888888887664 2466777664
No 29
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=95.64 E-value=0.1 Score=45.41 Aligned_cols=177 Identities=9% Similarity=-0.026 Sum_probs=98.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
.+.+.++++|+++..... ..+.+...+.+.. -..+|+||+.+.. .-..+...+.+. +++++++|.....
T Consensus 84 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAH---SQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHC---SSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcC---CCCEEEEcCCCCC
Confidence 345667788988765431 1122211112211 2579999997643 123344444443 5678888864321
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
. ++.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++..
T Consensus 156 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 222 (338)
T 3dbi_A 156 ----N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 222 (338)
T ss_dssp ----S------GGGE-ECBCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeC
Confidence 1 2221 22222 2344555666664 3478999988743 33466788899987765444433
Q ss_pred ccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
........+ +.+.+ ..+|+|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 223 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 222111111 22222 3789999999988888888887765 3467777654
No 30
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.61 E-value=0.17 Score=42.74 Aligned_cols=171 Identities=12% Similarity=0.021 Sum_probs=94.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... ..+.+.....+. .-..+|+||+.....-...++.+. .++++++++....
T Consensus 30 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~--- 97 (285)
T 3c3k_A 30 IEKTAEKNGYRILLCNT-----ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDP--- 97 (285)
T ss_dssp HHHHHHHTTCEEEEEEC-----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCT---
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccC---
Confidence 44566778988764321 122221112222 135799999976432233344443 3678999986422
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+. ++....
T Consensus 98 -~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~ 164 (285)
T 3c3k_A 98 -LS------TVSS-VSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYAE 164 (285)
T ss_dssp -TS------SSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEECS
T ss_pred -CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecCC
Confidence 12 3322 22222 2344555666664 2478999988753 2335667888887765 232222
Q ss_pred CCCChHH-HHH--HcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 215 VHHVDQT-VLK--QAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 215 ~~~~~~~-~~~--~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
......+ +.+ .+. .+|+|+..+-..+...++.+.+.+ ..++.|+++
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vvg~ 219 (285)
T 3c3k_A 165 NLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGF 219 (285)
T ss_dssp SSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred ChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 2221122 333 343 689999999888888888877654 235556544
No 31
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=95.60 E-value=0.041 Score=46.83 Aligned_cols=178 Identities=9% Similarity=0.019 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hH---HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DR---LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~---l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (262)
-+.+.++++|+++..... ....+. .+ ..+.+. -..+|+||+.+...-...++.+.+. +++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~ 101 (290)
T 2rgy_A 29 QTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLI-GRDCDGVVVISHDLHDEDLDELHRM---HPKMVFLNRAFD 101 (290)
T ss_dssp HHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHH-HTTCSEEEECCSSSCHHHHHHHHHH---CSSEEEESSCCT
T ss_pred HHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHH-hcCccEEEEecCCCCHHHHHHHhhc---CCCEEEEccccC
Confidence 345566788998765432 111111 11 112221 2579999997643213334444443 578888886432
Q ss_pred HHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeec
Q 024773 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
. . ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++.
T Consensus 102 ~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 168 (290)
T 2rgy_A 102 A----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE 168 (290)
T ss_dssp T----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE
T ss_pred C----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe
Confidence 1 1 2221 22222 2345555666664 2478999988743 2345677888887765433333
Q ss_pred cccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 212 TEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.........+ +.+.+ ..+|+|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 225 (290)
T 2rgy_A 169 SDFSPEGGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYD 225 (290)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred cCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 2211111111 22222 3789999999988888888887665 2466777653
No 32
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.53 E-value=0.061 Score=47.12 Aligned_cols=188 Identities=10% Similarity=0.018 Sum_probs=98.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~-~aV~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (262)
+.+.++++|+++..... ..+.+ .++..+..-..+|+||++.. .....+++.+.+ .++++++++....
T Consensus 26 ~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~~ 97 (350)
T 3h75_A 26 MQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQG---SGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTT---SCCEEEEEESCCC
T ss_pred HHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHh---CCCcEEEEcCCCC
Confidence 44566678988876521 11222 23333311147999999862 344444444433 3788998886433
Q ss_pred HHHHHhhhh---cCCCCceeecCCC-CCHHHHHHHhhhCC----CCc-cEEEEEccCCC-------hhhHHHHHHhCCCe
Q 024773 140 SIFEEVIQS---SKCSLDVAFSPSK-ATGKILASELPKNG----KKK-CTVLYPASAKA-------SNEIEEGLSNRGFE 203 (262)
Q Consensus 140 ~~L~~~~~~---~~~G~~~~~~p~~-~t~e~L~~~l~~~~----~~g-~~vL~~~g~~~-------~~~L~~~L~~~G~~ 203 (262)
..-+..+.. .+......+.... ..+..+++.|.+.. ... ++++++.|... ..-+.+.|++.|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~- 176 (350)
T 3h75_A 98 LDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ- 176 (350)
T ss_dssp TTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-
T ss_pred hHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-
Confidence 211000000 0000011222222 23444555555543 112 68999988754 3456778888886
Q ss_pred eeEEeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC---CCCeEEEEC
Q 024773 204 VVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIA 261 (262)
Q Consensus 204 v~~i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~---~~~~i~~IG 261 (262)
+....++..........+ +.+.+ .++++|+..+-..+...++.+.+.+. .++.|++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d 241 (350)
T 3h75_A 177 VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVN 241 (350)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecC
Confidence 333333332222111111 22222 37899999998888888888877652 367777764
No 33
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=95.47 E-value=0.051 Score=45.43 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=100.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCC-ccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~-~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
..+.+.++++|+++.....- ...+.+ .++..+ . .. +|+||+... ......++.+.+. +++++.+|
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~-~-~~~vdgii~~~~~~~~~~~~~~~~~~~---~ipvV~~~ 91 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHL-S-QAPPDALILAPNSAEDLTPSVAQYRAR---NIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHH-H-HSCCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEES
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHH-H-hCCCCEEEEeCCCHHHHHHHHHHHHHC---CCcEEEEe
Confidence 34556677789887755321 111222 122222 2 35 999999873 3455555655554 67899988
Q ss_pred hhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCC--CccEEEEEccCCC-------hhhHHHHHHhC-CCee
Q 024773 136 AGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK--KKCTVLYPASAKA-------SNEIEEGLSNR-GFEV 204 (262)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~--~g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v 204 (262)
.... .. +....+.... ..+..+++.|.+... ..+++.++.|... ..-+.+.|++. |..+
T Consensus 92 ~~~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (276)
T 3ksm_A 92 SDLA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRI 161 (276)
T ss_dssp SCCS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred cCCC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEE
Confidence 5431 12 2222233332 234555566666522 3578999988753 33456677777 7665
Q ss_pred eEEeeeccccCCCCh-HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEEC
Q 024773 205 VRLNTYTTEPVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIA 261 (262)
Q Consensus 205 ~~i~vY~~~~~~~~~-~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~IG 261 (262)
.. ++......... +.+.+.+ .++++|+.++-..+...++.+.+.+. .++.|++++
T Consensus 162 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~p~di~vig~d 221 (276)
T 3ksm_A 162 IA--APYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFD 221 (276)
T ss_dssp EE--CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEES
T ss_pred EE--EecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcCCCCCeEEEEeC
Confidence 42 22211111111 1122222 37899999999998888888887653 567777765
No 34
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=95.47 E-value=0.17 Score=42.87 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
.+.+.++++|+++... ..-. .+....+.++..+ ...+|+||+.+...-...++.+.+ .++++++++....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 99 (290)
T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFD--- 99 (290)
T ss_dssp HHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC-----
T ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCC---
Confidence 3455667789887654 3211 1111112233322 357999998765432333344433 3678999986432
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
. .+. .+.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++....
T Consensus 100 --~------~~~-~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~ 168 (290)
T 3clk_A 100 --D------DRP-FISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDY 168 (290)
T ss_dssp --C------CSC-EEECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCS
T ss_pred --C------CCC-EEEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCC
Confidence 1 111 122222 2344555666654 3478999988643 2346677888887765432332211
Q ss_pred CCCCh-HHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVD-QTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~-~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
..... ..+.+.+ ..+|+|+.++-..+...++.+.+.+ ..++.|++++
T Consensus 169 ~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 221 (290)
T 3clk_A 169 SYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSID 221 (290)
T ss_dssp SHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred ChhhHHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 11111 1122333 3789999999988888888887665 2467777664
No 35
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.41 E-value=0.12 Score=44.20 Aligned_cols=175 Identities=13% Similarity=0.042 Sum_probs=101.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEeChhHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~-f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
.+.+.++++|+++..... . .+.+.....+. .-..+|+||+.+...-.. .++.+.+ +++++.+|.....
T Consensus 36 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~~ 106 (303)
T 3kke_A 36 GVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVPG 106 (303)
T ss_dssp HHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCTT
T ss_pred HHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCCC
Confidence 455677788999875432 1 12221122222 236799999987544333 4444433 6789999865321
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
. +.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++..
T Consensus 107 ---~--------~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 172 (303)
T 3kke_A 107 ---R--------VGS-VILDDQKGGGIATEHLITL--GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDA 172 (303)
T ss_dssp ---C--------CCE-EEECHHHHHHHHHHHHHHT--TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred ---C--------CCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 1 111 12222 2345555666664 3478999988754 34456688889987754333332
Q ss_pred ccCCCCh-HHHHHH-----c---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 213 EPVHHVD-QTVLKQ-----A---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~-~~~~~~-----l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
....... +.+.+. + ..+|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 173 ~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 233 (303)
T 3kke_A 173 GWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGIN 233 (303)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEc
Confidence 2211111 123333 4 2689999999998888888887765 3467777664
No 36
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=95.38 E-value=0.13 Score=44.66 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=95.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... ..+.+.....+.. -..+|+||+.+...-...++.+.+. +++++.+|....
T Consensus 85 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~--- 153 (332)
T 2o20_A 85 VDDIASMYKYNMILANS-----DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNS---RTPVVLVGTIDG--- 153 (332)
T ss_dssp HHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHHH---CCCEEEESCCCT---
T ss_pred HHHHHHHcCCEEEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEccccC---
Confidence 34566678988764321 1122211122221 2579999997642212233434333 578888886422
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|..+....++....
T Consensus 154 -~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 223 (332)
T 2o20_A 154 -DK------EIPS-VNIDYHLAAYQSTKKLIDSG--NKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNY 223 (332)
T ss_dssp -TS------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCC
T ss_pred -CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 12 3332 22332 23455556666643 478999988753 2345678888998765433333221
Q ss_pred CCCChHH-HHHHcC-CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVDQT-VLKQAL-SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~~~-~~~~l~-~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
......+ +.+.+. .+|+|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 224 ~~~~~~~~~~~ll~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 224 SYEQGKALAERLLERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred CHHHHHHHHHHHhccCCCEEEECChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 1111111 222222 789999999988888888887665 2456666543
No 37
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=95.36 E-value=0.036 Score=48.13 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=102.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeC----CCchHHHHHHhcCCCccEEEEe--------------
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNADTIFDWIIIT-------------- 109 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~~~~~l~~~l~~l~~~d~IiFT-------------- 109 (262)
+.|++|++...+.....+.+.|.+.|+++.....-..... ...+++ ...+.++|+|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRID---EVDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGG---GCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccch---HHHHhcCCEEEeccccccCCceeeccc
Confidence 5689999998877777889999999999876532110000 000111 1234678988863
Q ss_pred --CHHHH-HHHHHHHHHcCCCCcEEEEeChhHH---HHHHHhhhhcCCCCceeecCC-----CCCHH----HHHHHhhh-
Q 024773 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATGK----ILASELPK- 173 (262)
Q Consensus 110 --S~~aV-~~f~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~-----~~t~e----~L~~~l~~- 173 (262)
++.-+ +.+++. .++.++++.|--.- +++++. |+.+.-.|+ .++.. ..+..+..
T Consensus 80 ~~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11112 222222 23456666775433 567888 998876663 22333 22222222
Q ss_pred --CCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCC--------C---hHHHHHHcCCCCEEEEeCHH
Q 024773 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 174 --~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~--------~---~~~~~~~l~~~d~ivFtS~s 238 (262)
....|+++++++.......+...|...|++| .+|.+..... . ..++.+.+...|+|+.+.|.
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 223 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA 223 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh
Confidence 1246789999988777778888999999754 4555432110 0 01233445689999999885
No 38
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=95.31 E-value=0.13 Score=45.23 Aligned_cols=177 Identities=8% Similarity=0.009 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++..... ..+.+.....+.. -..+|+||+.....-....+.+.+. +++++++|....
T Consensus 91 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~---~iPvV~i~~~~~-- 160 (355)
T 3e3m_A 91 SLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQRA---SIPIVEIWEKPA-- 160 (355)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHHC---CSCEEEESSCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEECCccC--
Confidence 455667788988764421 1122211122211 2579999998654333444445443 678888874311
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCh--------hhHHHHHHhCCCeeeE-Eeeec
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVR-LNTYT 211 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~~--------~~L~~~L~~~G~~v~~-i~vY~ 211 (262)
.. ... .+.... ..+..+++.|.+.. .+++.++.|.... .-+.+.|++.|..+.+ +.++.
T Consensus 161 --~~------~~~-~V~~D~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 229 (355)
T 3e3m_A 161 --HP------IGH-TVGFSNERAAYDMTNALLARG--FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGA 229 (355)
T ss_dssp --SC------SSE-EEECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESC
T ss_pred --CC------CCC-EEEeChHHHHHHHHHHHHHCC--CCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEec
Confidence 11 221 222322 23455556666643 4789999885432 3366788899988764 33332
Q ss_pred cccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 212 TEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.........+ +.+.+ ..+|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 230 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD 286 (355)
T 3e3m_A 230 PPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFG 286 (355)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSS
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 2111111111 22222 4789999999988888888877655 2466666543
No 39
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=95.26 E-value=0.041 Score=47.18 Aligned_cols=174 Identities=10% Similarity=-0.016 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++.....- .+.+.....+. .-..+|+||+.+...-....+.+.+. +++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~--- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEF---KVPYLIVGKSL--- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHT---TCCEEEESCCC---
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHc---CCCEEEECCCC---
Confidence 3455667789888764321 11111112221 23679999998654333444444443 67899998653
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
... ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|..+.. ++...
T Consensus 117 -~~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~ 184 (305)
T 3huu_A 117 -NYE------NIIH-IDNDNIDAAYQLTQYLYHLG--HRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS 184 (305)
T ss_dssp -SST------TCCE-EECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS
T ss_pred -ccc------CCcE-EEeCHHHHHHHHHHHHHHCC--CCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC
Confidence 112 2332 22222 23455556666653 478999988654 33456788899988776 22221
Q ss_pred cCCCChHHHHHH-c---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~~~~~~~-l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
... ....+.+. + ..+|+|+..+-..+-..++.+.+.+ ..++.|++++
T Consensus 185 ~~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~di~vig~D 238 (305)
T 3huu_A 185 MND-LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp HHH-HHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred cHH-HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEEEC
Confidence 111 11112222 2 3789999999988888888887765 3567777664
No 40
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=95.24 E-value=0.089 Score=44.39 Aligned_cols=178 Identities=9% Similarity=-0.006 Sum_probs=95.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++.... . ..+.+...+.++. -..+|+||+.+...-....+.+.+. .++++++++....
T Consensus 29 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~--- 98 (289)
T 1dbq_A 29 VEKNCFQKGYTLILGN---A--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEY--RHIPMVVMDWGEA--- 98 (289)
T ss_dssp HHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHT--TTSCEEEEECSSC---
T ss_pred HHHHHHHcCCeEEEEc---C--CCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc--cCCCEEEEccCCC---
Confidence 3455667898776431 1 1222221122221 2579999987643222333444331 3678888875321
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. ++...+.... ..+..+++.|.+.. .+++.++.|... ..-+.+.|+++|..+....++....
T Consensus 99 -~~------~~~~~V~~d~~~~~~~~~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~ 169 (289)
T 1dbq_A 99 -KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF 169 (289)
T ss_dssp -CS------SSCEEEEECHHHHHHHHHHHHHHTT--CCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCS
T ss_pred -cc------CcCCEEEeCcHHHHHHHHHHHHHCC--CCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCC
Confidence 12 2211222222 23455556666642 478999987642 3346678888887765433332211
Q ss_pred CCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
......+ +.+.+ ..+|+|+..+-..+..+++.+.+.+ ..++.|++++
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d 223 (289)
T 1dbq_A 170 EPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYD 223 (289)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 1111111 22223 2689999999888888888887665 2466777664
No 41
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=95.15 E-value=0.062 Score=45.23 Aligned_cols=174 Identities=12% Similarity=0.090 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++.....- .+....+.++..+ -..+|+|| .+...-...+. . .+++++.+|.... .
T Consensus 26 gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~--~~~vdgiI-~~~~~~~~~~~---~---~~iPvV~~~~~~~---~ 91 (280)
T 3gyb_A 26 SLSDVLTPKGYRLSVIDSL--TSQAGTDPITSAL--SMRPDGII-IAQDIPDFTVP---D---SLPPFVIAGTRIT---Q 91 (280)
T ss_dssp HHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHH--TTCCSEEE-EESCC--------------CCCEEEESCCCS---S
T ss_pred HHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHH--hCCCCEEE-ecCCCChhhHh---h---cCCCEEEECCCCC---C
Confidence 3455677889998876654 2111122333332 36799999 44333222222 1 4788999986531 1
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-----hhhHHHHHHhCCCeeeEEeeeccccCCC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~ 217 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....+|. .....
T Consensus 92 ~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~-~~~~~ 161 (280)
T 3gyb_A 92 AS------THDS-VANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLG-PAVEH 161 (280)
T ss_dssp SC------STTE-EEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCS-CCCHH
T ss_pred CC------CCCE-EEechHHHHHHHHHHHHHC--CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccC-CCCHH
Confidence 12 3332 22222 3345556666664 3478999998753 3446678888988776433222 11111
Q ss_pred ChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 218 VDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 218 ~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
...+ +.+.+ ..+|+|+.++-..+...++.+.+.+ ..++.|++++
T Consensus 162 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 162 AGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 1111 22222 3799999999998888888887765 2467777764
No 42
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.99 E-value=0.096 Score=44.24 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=99.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEeCh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGA 136 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-----aV~~f~~~l~~~~~~~~~i~aVG~ 136 (262)
.+.+.++++|+++...... .+.+.....+.. -..+|+||+.... .....++.+.+. +++++.+|.
T Consensus 36 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~---~iPvV~~~~ 107 (298)
T 3tb6_A 36 GIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKN---GIPFAMINA 107 (298)
T ss_dssp HHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHT---TCCEEEESS
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhc---CCCEEEEec
Confidence 4556777889988754321 122211122221 2579999997653 233344445443 678999886
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeEEee
Q 024773 137 GTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~v 209 (262)
... .. ++.. +.... ..+..+++.|.+.. .+++.++.+... ..-+.+.|+++|..+....+
T Consensus 108 ~~~----~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~ 174 (298)
T 3tb6_A 108 SYA----EL------AAPS-FTLDDVKGGMMAAEHLLSLG--HTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMI 174 (298)
T ss_dssp CCT----TC------SSCE-EEECHHHHHHHHHHHHHHTT--CCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGE
T ss_pred CcC----CC------CCCE-EEeCcHHHHHHHHHHHHHCC--CCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceE
Confidence 432 12 2322 22222 33455666666643 468888887654 33466788898887654333
Q ss_pred ec--cccCCCC-hHHHHHHc---CC--CCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 210 YT--TEPVHHV-DQTVLKQA---LS--IPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 210 Y~--~~~~~~~-~~~~~~~l---~~--~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
+. ....... ...+.+.+ .. +|+|+..+-..+-..++.+.+.+ ..++.|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 237 (298)
T 3tb6_A 175 VTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYD 237 (298)
T ss_dssp EEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred EEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 22 2111110 11122222 35 89999999998888888888765 2466666543
No 43
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=94.98 E-value=0.68 Score=39.14 Aligned_cols=182 Identities=11% Similarity=0.057 Sum_probs=95.5
Q ss_pred HHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 64 KLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 64 ~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
.+.+.++++|+ ++.... . ..+.+.....+.. -..+|+||+.... .....++.+.+. ++++++++...
T Consensus 23 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 94 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMND---S--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ---NVPVVFFNKEP 94 (309)
T ss_dssp HHHHHHHTCTTEEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTT---TCCEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEec---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHC---CCcEEEecCCC
Confidence 34556777897 654332 1 1122211122221 2579999997633 234445545443 67899988643
Q ss_pred HHH-HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhC----------CCCccEEEEEccCCC-------hhhHHHHHHh
Q 024773 139 ASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN----------GKKKCTVLYPASAKA-------SNEIEEGLSN 199 (262)
Q Consensus 139 a~~-L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~----------~~~g~~vL~~~g~~~-------~~~L~~~L~~ 199 (262)
... +... .++. .+.... ..+..+++.|.+. ....++++++.|... ..-+.+.|++
T Consensus 95 ~~~~~~~~-----~~~~-~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 168 (309)
T 2fvy_A 95 SRKALDSY-----DKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 168 (309)
T ss_dssp CHHHHHTC-----TTEE-EEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHH
T ss_pred Cccccccc-----CccE-EEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHh
Confidence 221 1111 0121 122222 2334455555551 122357888887643 2346678889
Q ss_pred CCCeeeEEeeeccccCCCChHH-HHHHcC-----CCCEEEEeCHHHHHHHHHHhcccCCC-CCeEEEE
Q 024773 200 RGFEVVRLNTYTTEPVHHVDQT-VLKQAL-----SIPVVAVASPSAVRSWVNLISDTEQW-SNSVACI 260 (262)
Q Consensus 200 ~G~~v~~i~vY~~~~~~~~~~~-~~~~l~-----~~d~ivFtS~s~~~~~~~~~~~~~~~-~~~i~~I 260 (262)
.|..+....++..........+ +.+.+. .+++|+..+-..+..+++.+.+.+ . ++.|+++
T Consensus 169 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g-~~di~vig~ 235 (309)
T 2fvy_A 169 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGV 235 (309)
T ss_dssp TTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT-CTTSCEECS
T ss_pred cCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcC-CCCceEEec
Confidence 9988766544432221111111 222232 579999999888888888887754 3 5666554
No 44
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=94.94 E-value=0.15 Score=42.56 Aligned_cols=175 Identities=8% Similarity=0.014 Sum_probs=97.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
.+.+.++++|+++..... . .+.+.....+.. -..+|+||+.+.. .-...++.+.+. +++++++|....
T Consensus 23 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~- 93 (272)
T 3o74_A 23 QLEQGARARGYQLLIASS---D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDK---GLPVIAIDRRLD- 93 (272)
T ss_dssp HHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHT---TCCEEEESSCCC-
T ss_pred HHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHc---CCCEEEEccCCC-
Confidence 355667788998876432 1 122211122221 2579999998654 113344444443 678888886432
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
.. ++.. +.... ..+..+++.|.+.. .+++.++.|... ..-+.+.|++.|..+.. ++..
T Consensus 94 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~ 159 (272)
T 3o74_A 94 ---PA------HFCS-VISDDRDASRQLAASLLSSA--PRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQGE 159 (272)
T ss_dssp ---TT------TCEE-EEECHHHHHHHHHHHHHTTC--CSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEES
T ss_pred ---cc------ccCE-EEEchHHHHHHHHHHHHHCC--CcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eecC
Confidence 12 3322 22222 23455556666542 478999988654 33456678888865432 2222
Q ss_pred ccCCCCh-HHHHHHc---C-CCCEEEEeCHHHHHHHHHHhcccC--CCCCeEEEEC
Q 024773 213 EPVHHVD-QTVLKQA---L-SIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~-~~~~~~l---~-~~d~ivFtS~s~~~~~~~~~~~~~--~~~~~i~~IG 261 (262)
....... ..+.+.+ . .+++|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 160 AFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 1111111 1122222 4 599999999999888888887765 2567777664
No 45
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=94.66 E-value=0.42 Score=40.66 Aligned_cols=182 Identities=10% Similarity=0.053 Sum_probs=93.6
Q ss_pred HHHHHHHhCCC---cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 64 KLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 64 ~l~~~L~~~G~---~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
-+.+.++++|+ ++... +.... .+.+.....++. -..+|.||+++..+...+.. . ..+++++.+|...
T Consensus 22 gi~~~l~~~gy~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~~ 93 (295)
T 3lft_A 22 GIQDGLAEEGYKDDQVKID-FMNSE--GDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS----A-TKDLPVIMAAITD 93 (295)
T ss_dssp HHHHHHHHTTCCGGGEEEE-EEECT--TCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH----H-CSSSCEEEESCSC
T ss_pred HHHHHHHHcCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH----c-CCCCCEEEEeccC
Confidence 45567788899 65432 11111 222222223322 35799999998766554332 1 2477888887421
Q ss_pred HHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeEEee
Q 024773 139 ASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 139 a~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~v 209 (262)
-.. .... ...+-....+-........++.|.+.....+++.++.+... .+.+.+.|++.|+.+....+
T Consensus 94 ~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~ 170 (295)
T 3lft_A 94 PIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAV 170 (295)
T ss_dssp TTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEec
Confidence 100 0000 00011111111223456666776665323489999887643 24567788899998877665
Q ss_pred eccccCCCChHHHHHHcCCCCEEEEeCHHHHHHHHHHhcccC-CCCCeEEE
Q 024773 210 YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVAC 259 (262)
Q Consensus 210 Y~~~~~~~~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~~-~~~~~i~~ 259 (262)
+... .....+.+.++++|+|++.+-..+-..++.+.+.. ..+++++.
T Consensus 171 ~~~~---~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig 218 (295)
T 3lft_A 171 PSTN---EIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYP 218 (295)
T ss_dssp SSGG---GHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHHHTTTTCCCEEE
T ss_pred CCHH---HHHHHHHHHHhcCCEEEECCchhHHHHHHHHHHHHHHcCCCEEe
Confidence 5321 11122333335889988887665544333333221 23566654
No 46
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=94.65 E-value=0.064 Score=46.95 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=97.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++..... ..+.+.....+. .-..+|+||+.....-....+.+.+. +++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGVT-----DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAA---GIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHC---SSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhC---CCCEEEEeCCC---
Confidence 345566678988754321 112222122222 13579999998654333444445443 67888886421
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCC--C------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~--~------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
... +.. .+.... ..+...++.|.+.. .+++.++.|.. . ..-+.+.|+++|..+....+|..
T Consensus 158 -~~~------~~~-~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VDA-MVGISHRRAGREMAQAILKAG--YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SSE-EEEECHHHHHHHHHHHHHHHT--CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CCC-EEEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 011 221 222222 23455556666543 46888888864 1 23466788899988776666543
Q ss_pred ccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
........+ +.+.+ ..+|+|+.++-..+-..++.+.+.+ ..++.|+.+
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~disvvg~ 282 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGIDIPGQIGLAGF 282 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 222111111 22222 3789999999988888888887765 245666554
No 47
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=94.60 E-value=0.068 Score=46.45 Aligned_cols=176 Identities=10% Similarity=0.027 Sum_probs=95.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... . .+.+.....+..+ ..+|+||+.+...-...++.+.+ .+++++.+|....
T Consensus 82 i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 150 (332)
T 2hsg_A 82 IEDIATMYKYNIILSNS---D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK---SPVPVVLAASIES--- 150 (332)
T ss_dssp HHHHHHHHTCEEEEEEC---C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHTT---SSSCEEEESCCCS---
T ss_pred HHHHHHHcCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHh---CCCCEEEEccccC---
Confidence 44556678988765421 1 1222222233332 57999999764322223333332 3678999986421
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCC-C-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~-~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|.. . ..-+.+.|++.|..+....++...
T Consensus 151 -~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 220 (332)
T 2hsg_A 151 -TN------QIPS-VTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGD 220 (332)
T ss_dssp -CT------TSCE-EEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECC
T ss_pred -CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCC
Confidence 12 3322 22222 2345555666664 247899998875 3 234677888899876543333322
Q ss_pred cCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC---CCCeEEEEC
Q 024773 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~---~~~~i~~IG 261 (262)
.......+ +.+.+ ..+|+|+..+-..+-..++.+.+.+. .++.|+.++
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 221 YTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp SSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 11111111 22222 26899999999888888888876542 345565543
No 48
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=94.40 E-value=0.2 Score=43.67 Aligned_cols=182 Identities=11% Similarity=-0.035 Sum_probs=99.1
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 024773 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (262)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (262)
++|.+.-+.... ..+.+.++++|+++.....-. + .......+.+ .-..+|+||+.+. +..
T Consensus 65 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~l-~~~~vdGiIi~~~---------~~~ 131 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--V-QAQDVVMESL-ISIQAAGIIHVPV---------VGS 131 (333)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--H-HHHHHHHHHH-HHHTCSEEEECCC---------TTC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--h-HHHHHHHHHH-HhCCCCEEEEcch---------HHH
Confidence 456555454332 234456667899887654322 1 0011111222 1247999999887 222
Q ss_pred cCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHH
Q 024773 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEE 195 (262)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~ 195 (262)
....+++++.+|.... .. ++.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+
T Consensus 132 ~~~~~iPvV~~~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 132 IAPEGIPMVQLTRGEL----GP------GFPR-VLCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp CC-CCSCEEEECC--------C------CSCE-EEECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred HhhCCCCEEEECccCC----CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2234789999997542 23 4433 22222 2345555666654 3478999998754 234567
Q ss_pred HHHhCCCeeeEEeeeccccCCCChHH-HHHHcC--CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 196 GLSNRGFEVVRLNTYTTEPVHHVDQT-VLKQAL--SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 196 ~L~~~G~~v~~i~vY~~~~~~~~~~~-~~~~l~--~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.|++.|.. ..++..........+ +.+.+. .+|+|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 199 al~~~g~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 199 AASIYGAE---VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHTTCE---EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHCCCC---EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 78888876 222201111111111 222221 389999999988888888887765 3567777664
No 49
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=94.32 E-value=0.12 Score=43.26 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
-+.+.++++|+++.....-.. +....+.++... -..+|+||+.+...-....+ .....+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~---- 89 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILSL-ARLKRYLENTTL--AYLTDGLILASYDLTERFEE---GRLPTERPVVLVDAQNP---- 89 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCSC-CCCC-----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCT----
T ss_pred HHHHHHHHCCCEEEEEeCCCc-hhhHHHHHHHHH--hCCCCEEEEecCCCCHHHHH---HHhhcCCCEEEEeccCC----
Confidence 345566778988776543111 101111122222 25799999976543222222 22224788999986432
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCC-C---h--------hhHHHHHHhCCCeeeEEeee
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNTY 210 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~-~---~--------~~L~~~L~~~G~~v~~i~vY 210 (262)
++. .+.... ..+..+++.|.+. ..+++.++.|.. . . .-+.+.|++.|..+....++
T Consensus 90 --------~~~-~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~ 158 (276)
T 2h0a_A 90 --------RYD-SVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLY 158 (276)
T ss_dssp --------TSE-EEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEE
T ss_pred --------CCC-EEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHee
Confidence 211 122222 2345566667664 347899998865 3 1 22456788888776543333
Q ss_pred ccccCCCChHH-HHHHcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 211 TTEPVHHVDQT-VLKQAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 211 ~~~~~~~~~~~-~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
..........+ +.+.+. .+|+|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 216 (276)
T 2h0a_A 159 ITRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFD 216 (276)
T ss_dssp EECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEES
T ss_pred ecCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 32211111111 222232 589999888888888888887765 2456676654
No 50
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=94.31 E-value=0.1 Score=44.51 Aligned_cols=175 Identities=9% Similarity=0.055 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
.+.+.++++|+++.....- .+.+ .+.+.+ .-..+|+||+.....-....+.+.+. +++++++|.....
T Consensus 33 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdGiI~~~~~~~~~~~~~l~~~---~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 33 GISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMI-KQRMVDAFILLYSKENDPIKQMLIDE---SMPFIVIGKPTSD 103 (295)
T ss_dssp HHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCSEEEESCCCTTCHHHHHHHHT---TCCEEEESCCCSS
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHH-HhCCcCEEEEcCcccChHHHHHHHhC---CCCEEEECCCCcc
Confidence 3556677889988754321 1111 122222 23679999997654333444444443 6789999864221
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
. .. ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|+++|..+. .++ .
T Consensus 104 ~--~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~--~~~-~ 169 (295)
T 3hcw_A 104 I--DH------QFTH-IDNDNILASENLTRHVIEQG--VDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ--IIE-T 169 (295)
T ss_dssp G--GG------GSCE-EEECHHHHHHHHHHHHHHHC--CSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE--EEE-E
T ss_pred c--cC------CceE-EecCcHHHHHHHHHHHHHcC--CccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee--EEe-c
Confidence 0 00 1111 12222 23455556666643 478999988654 3446678889998775 222 2
Q ss_pred ccCCCChH----HHHHHcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 213 EPVHHVDQ----TVLKQAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~~----~~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
........ ++++... .+++|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 170 SNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp CSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 11111111 1222222 688998888888888888887765 3466676654
No 51
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=94.26 E-value=0.036 Score=48.25 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=100.8
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEE----eC----------H
Q 024773 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIII----TS----------P 111 (262)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IiF----TS----------~ 111 (262)
-+.|++|++...+.....+.+.|.+.|+++.....-+....... .........+.++|.|+. .. .
T Consensus 4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 36789999998877777889999999999875421111100000 000001112467898886 31 1
Q ss_pred HH--H-HHHHHHHHHcCCCCcEEEEeChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh-------------h
Q 024773 112 EA--G-SVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------------P 172 (262)
Q Consensus 112 ~a--V-~~f~~~l~~~~~~~~~i~aVG~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l-------------~ 172 (262)
.- + +.+++. .++.+++++|--. .+++.+. |+.+.-.|.. ..-.+.+.+ .
T Consensus 84 ~~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~-~~v~~~r~~~~~~g~~~~~~~~~ 151 (300)
T 2rir_A 84 EEVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFER-DDIAIYNSIPTVEGTIMLAIQHT 151 (300)
T ss_dssp SCEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCC-CceEEEcCccHHHHHHHHHHHhc
Confidence 11 2 223322 2344556676543 4577888 9998766653 221222211 1
Q ss_pred hCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCC-----------ChHHHHHHcCCCCEEEEeCHH
Q 024773 173 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 173 ~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~-----------~~~~~~~~l~~~d~ivFtS~s 238 (262)
.....+++++++........+...|...|++ +.+|.+..... ....+.+.+...|+|+.+.|.
T Consensus 152 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 152 DYTIHGSQVAVLGLGRTGMTIARTFAALGAN---VKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp SSCSTTSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred CCCCCCCEEEEEcccHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 1234678999998877777888889999985 44555432110 012233445689999999885
No 52
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=94.24 E-value=0.27 Score=41.45 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (262)
.+.+.++++|+++..... . .+.+.....+.. -..+|+||+.... .....++.+.+. +++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~ 100 (293)
T 3l6u_A 29 AFKAEAKANKYEALVATS---Q--NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKA---GIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHT---TCCEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHc---CCCEEEecCCCC
Confidence 355667788998875532 1 122211122221 2579999997543 333444555444 678898886432
Q ss_pred HHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhC--C---CCccEEEEEccCCC-------hhhHHHHHHhC-CCeee
Q 024773 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN--G---KKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVV 205 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~--~---~~g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v~ 205 (262)
. .. ++.. +.... ..+..+++.|.+. . ...++++++.|... ..-+.+.|++. |+.+.
T Consensus 101 ~---~~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 170 (293)
T 3l6u_A 101 S---DA------VVSS-ITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIV 170 (293)
T ss_dssp C---TT------CSEE-EEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred C---Cc------ceeE-EecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEe
Confidence 1 01 2222 22222 2334445555552 2 11138999988654 34566778888 87765
Q ss_pred EEeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 206 RLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 206 ~i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
.. +..........+ +.+.+ ..+|+|+.++-..+-..++.+.+.+..++.|++++
T Consensus 171 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d 228 (293)
T 3l6u_A 171 DS--VSGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGID 228 (293)
T ss_dssp EE--EECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred ee--ccCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEec
Confidence 43 221111111111 22222 37899999999998888888887654466666553
No 53
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.16 E-value=0.82 Score=38.98 Aligned_cols=164 Identities=8% Similarity=-0.006 Sum_probs=84.5
Q ss_pred HHHHHHHhCCC----cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChh
Q 024773 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~ 137 (262)
-+.+.++++|+ ++... +.... .+.+.....++. -...|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTAQ--GNPAIAVQIARQFVGENPDVLVGIATPTAQALVS----A-TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEECT--TCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH----H-CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecCC--CCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh----c-CCCcCEEEEecC
Confidence 35567778898 54321 11111 222222222222 25799999998766554332 1 246788877732
Q ss_pred HHHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeEEe
Q 024773 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~ 208 (262)
.-.. .... ...+-...-+-........++.|.+.....+++.++.+... .+.+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1100 0000 00011111111223355566666665323579999987642 2456778889999887766
Q ss_pred eeccccCCCChHHHHHHcCCCCEEEEeCHHHHH
Q 024773 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (262)
Q Consensus 209 vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s~~~ 241 (262)
++.. +.....+.+.+.+.|+|++.+-..+-
T Consensus 177 ~~~~---~~~~~~~~~l~~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 177 ALKS---ADVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp CSSG---GGHHHHHHHHGGGCSEEEECSCHHHH
T ss_pred cCCh---HHHHHHHHHHhccCCEEEECCcHhHH
Confidence 5432 11112233333578998888766543
No 54
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=94.11 E-value=0.25 Score=42.93 Aligned_cols=178 Identities=9% Similarity=-0.010 Sum_probs=95.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++.... . ..+.+.....+.. -..+|+||+.+...-......+.+ ..+++++++|....
T Consensus 80 i~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~--- 149 (340)
T 1qpz_A 80 VEKNCFQKGYTLILGN---A--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA--- 149 (340)
T ss_dssp HHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC---
T ss_pred HHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC---
Confidence 3456667898876421 1 1222221122222 257999999764321223333432 13678888885321
Q ss_pred HHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. ++...+....+ .+...++.|.+.. .+++.++.|... ..-+.+.|+++|..+....++....
T Consensus 150 -~~------~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 220 (340)
T 1qpz_A 150 -KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF 220 (340)
T ss_dssp -CC------SSSEEEECCHHHHHHHHHHHHHHHT--CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCS
T ss_pred -CC------CCCCEEEECHHHHHHHHHHHHHHCC--CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCC
Confidence 11 22112333322 3445556666643 478999988643 2346678888887765433332211
Q ss_pred CCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
......+ +.+.+ ..+|+|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 221 ~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 221 EPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEeEC
Confidence 1111111 22223 2689999999888888888887765 2466676653
No 55
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=94.06 E-value=0.17 Score=43.42 Aligned_cols=178 Identities=8% Similarity=0.018 Sum_probs=93.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++...... ..+.+.....++. ...+|+||+.... ++...++.+.+. ++++++++.....
T Consensus 22 i~~~~~~~g~~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 94 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQ----KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEM---GIPVVTLDTDSPD 94 (313)
T ss_dssp HHHHHHHHTCEEEEECCS----SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSCCTT
T ss_pred HHHHHHHcCCEEEEECCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC---CCeEEEeCCCCCC
Confidence 445667789876543210 1122211122221 2579999986543 233344444443 6788888864210
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
.. ++.. +.... ..+..+++.|.+.....+++.++.|... ..-+.+.|++.|+.+... +..
T Consensus 95 ---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~ 162 (313)
T 2h3h_A 95 ---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDI--LND 162 (313)
T ss_dssp ---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEE--EEC
T ss_pred ---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEe--ecC
Confidence 01 2222 22222 2334455566554213478999998743 234567788888876542 221
Q ss_pred ccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC-CCCCeEEEEC
Q 024773 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~-~~~~~i~~IG 261 (262)
........+ +.+.+ ..+++|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~p~dv~vvg~d 216 (313)
T 2h3h_A 163 EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFD 216 (313)
T ss_dssp SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHHHHHHcCCCCCeEEEEeC
Confidence 111111111 22222 3689999998888778888877654 3467777654
No 56
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=93.98 E-value=0.84 Score=38.08 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=100.9
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHH
Q 024773 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
.++|.+.-+.... ..+.+.++++|+++.....- .+.+.....+. .-..+|+||+..... ...++.
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~ 80 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN-----ADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQE 80 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT-----TCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHH
Confidence 3455555444322 33555677889888764321 12221112222 236799999998776 556665
Q ss_pred HHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-hhhHHH---
Q 024773 121 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-SNEIEE--- 195 (262)
Q Consensus 121 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-~~~L~~--- 195 (262)
+.+. +++++.+|.... .. ++.. +.... ..+..+++.|.+. ..+++.++.|... .....+
T Consensus 81 l~~~---~iPvV~i~~~~~----~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~ 144 (276)
T 3jy6_A 81 ILHQ---QMPVVSVDREMD----AC------PWPQ-VVTDNFEAAKAATTAFRQQ--GYQHVVVLTSELELSRTRQERYR 144 (276)
T ss_dssp HHTT---SSCEEEESCCCT----TC------SSCE-EECCHHHHHHHHHHHHHTT--TCCEEEEEEECSTTCHHHHHHHH
T ss_pred HHHC---CCCEEEEecccC----CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEecCCCCCchHHHHHH
Confidence 5543 678999986432 22 3332 22222 3345555666664 3478999998765 222222
Q ss_pred HHHhCCCeeeEEeeeccc-cCCCChHHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 196 GLSNRGFEVVRLNTYTTE-PVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 196 ~L~~~G~~v~~i~vY~~~-~~~~~~~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
...+.=.....+.+.... ........+.+.+ ..+|+|+.++-..+...++.+.+.+ ..++.|++++
T Consensus 145 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 217 (276)
T 3jy6_A 145 GILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp HHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred HHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCCCCCCcEEEEEEC
Confidence 222211111122222110 0000112223333 4789999999999988888888765 2466676654
No 57
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.71 E-value=0.15 Score=43.00 Aligned_cols=165 Identities=8% Similarity=-0.009 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChh-HH
Q 024773 64 KLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-TA 139 (262)
Q Consensus 64 ~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~-Ta 139 (262)
.+.+.++++|++ +...+.- .+.+.....+.. -..+|+||+.+ ..+......+++++.+|.. ..
T Consensus 31 gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~~ 97 (277)
T 3hs3_A 31 GIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANIN 97 (277)
T ss_dssp HHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCCC
T ss_pred HHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEcccccC
Confidence 455667788998 6543221 122211112211 25799999998 1122222247899999864 22
Q ss_pred HHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeec
Q 024773 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
.. ++ . +.... ..+...++.|. . ..+++.++.|... ..-+.+.|++.|..+... ++.
T Consensus 98 ----~~------~~-~-V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~ 161 (277)
T 3hs3_A 98 ----DD------IV-R-IVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP 161 (277)
T ss_dssp ----SS------SE-E-EEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC
T ss_pred ----CC------CE-E-EEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc
Confidence 12 33 2 22222 23444555565 2 3478999988753 344667889999888765 443
Q ss_pred cccCCCChHHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 212 TEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 212 ~~~~~~~~~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
.... .+.+.+.+ ..+++|+..+-..+-..++.+.+.+ ..++.|+++
T Consensus 162 ~~~~---~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~ 213 (277)
T 3hs3_A 162 ENNP---YISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLKIPDDFQLVGY 213 (277)
T ss_dssp SSCH---HHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred CCch---HHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 3222 22232223 3789999999988888888887765 245666554
No 58
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=93.51 E-value=0.78 Score=39.47 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=80.6
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCC
Q 024773 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (262)
Q Consensus 101 ~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~ 177 (262)
..+|+||+.+.. ++...++.+.+. ++++++++..... .. .+. .+.... ..+..+++.|.+....
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~---~~------~~~-~V~~D~~~~g~~a~~~L~~~~~G 127 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQK---GIPVILVDRKILS---DK------YTA-YIGADNYEIGRSVGNYIASSLKG 127 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHT---TCCEEEESSCCSS---SC------SSE-EEEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHC---CCeEEEeCCCCCC---cc------eeE-EEecCHHHHHHHHHHHHHHHcCC
Confidence 579999987543 333444544443 6788888854210 01 122 122222 2345555666654223
Q ss_pred ccEEEEEccCCC-------hhhHHHHHHhC-CCeeeEEeeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHH
Q 024773 178 KCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVN 245 (262)
Q Consensus 178 g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v~~i~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~ 245 (262)
.+++.++.|... ..-+.+.|++. |+.+..+ .| .........+ +.+.+ ..+|+|+.++-..+-.+++
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~-~~-~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~g~~~ 205 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDK-AD-AAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQ 205 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEEE-EE-CTTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHHHHHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEee-ec-CCCCHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHH
Confidence 478999988643 23456677777 7766542 22 1111110111 22222 3689999999888888888
Q ss_pred HhcccCC-CCCeEEEEC
Q 024773 246 LISDTEQ-WSNSVACIA 261 (262)
Q Consensus 246 ~~~~~~~-~~~~i~~IG 261 (262)
.+.+.+. .++.|++++
T Consensus 206 al~~~Gip~dv~vig~D 222 (325)
T 2x7x_A 206 AAKMAGREKEMIFVGID 222 (325)
T ss_dssp HHHHTTCTTSSEEEEEE
T ss_pred HHHHcCCCCCeEEEEEC
Confidence 8776553 466676653
No 59
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=93.49 E-value=0.81 Score=38.96 Aligned_cols=178 Identities=10% Similarity=0.048 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
.-+.+.++++|+++..... ..+.+.....+.. -..+|+||+..... ....++.+.+. ++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQE---GIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTT---TCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC---CCeEEEECCcC
Confidence 3456677788988875432 1222211122221 25799999987543 23445545443 68999998643
Q ss_pred HHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCh-------hhHHHHHHhC----CCeeeE
Q 024773 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVVR 206 (262)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~~-------~~L~~~L~~~----G~~v~~ 206 (262)
. .. ++...+.... ..+..+++.|.+.. ..++++++.|.... .-+.+.|++. |+.+..
T Consensus 94 ~----~~------~~~~~V~~D~~~~g~~a~~~L~~~~-G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~ 162 (313)
T 3m9w_A 94 N----DA------DIDFYISFDNEKVGELQAKALVDIV-PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVG 162 (313)
T ss_dssp T----TS------CCSEEEEECHHHHHHHHHHHHHHHC-SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred C----CC------CceEEEecCHHHHHHHHHHHHHHhC-CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEe
Confidence 2 13 4422233332 23455566666222 24689999886542 3455566665 444433
Q ss_pred EeeeccccCCCCh----HHHHHHc-CCCCEEEEeCHHHHHHHHHHhcccCCC-CCeEEEE
Q 024773 207 LNTYTTEPVHHVD----QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACI 260 (262)
Q Consensus 207 i~vY~~~~~~~~~----~~~~~~l-~~~d~ivFtS~s~~~~~~~~~~~~~~~-~~~i~~I 260 (262)
... ......... .++++.- ..+++|+.++-..+...++.+.+.+.. ++.|+.+
T Consensus 163 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vig~ 221 (313)
T 3m9w_A 163 DQW-VDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQ 221 (313)
T ss_dssp EEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCC
T ss_pred ecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCCCCcEEEec
Confidence 221 111111111 1122222 478999999999998888888876532 4555443
No 60
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=93.23 E-value=0.43 Score=39.86 Aligned_cols=176 Identities=9% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++.... . ..+.+.-...+.. ....|+||+.+.. .....++.+.+. +++++.++....
T Consensus 23 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~i~~~~~- 93 (271)
T 2dri_A 23 AQKEADKLGYNLVVLD---S--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA---NIPVITLDRQAT- 93 (271)
T ss_dssp HHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSCCS-
T ss_pred HHHHHHHcCcEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC---CCcEEEecCCCC-
Confidence 4556677898876432 1 1222211122221 3579999987643 222334444443 578888885321
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
.. +....+.... ..+...++.|.+.....+++.++.|... ..-+.+.|++.|..+... .+ .
T Consensus 94 ---~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~-~ 162 (271)
T 2dri_A 94 ---KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS-QP-A 162 (271)
T ss_dssp ---SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE-EE-C
T ss_pred ---CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe-cC-C
Confidence 11 2111122222 2334455666654322379999988643 234667888888766432 12 1
Q ss_pred ccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEE
Q 024773 213 EPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 213 ~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
........+ +.+.+ ..+++|+.++-..+-..++.+.+.+..++.|+.+
T Consensus 163 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~~dv~vvGf 214 (271)
T 2dri_A 163 DFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 214 (271)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCCCCcEEEEe
Confidence 111111111 22222 3689999999998888888887765556666654
No 61
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=93.19 E-value=0.32 Score=40.80 Aligned_cols=168 Identities=11% Similarity=-0.000 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (262)
.+.+.++++|+++..... . .+.+. . ... .+|+||+.....-...++.+.+. +++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~---~-~~~-~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~---- 91 (277)
T 3cs3_A 29 GIKKGLALFDYEMIVCSG---K--KSHLF---I-PEK-MVDGAIILDWTFPTKEIEKFAER---GHSIVVLDRTTE---- 91 (277)
T ss_dssp HHHHHHHTTTCEEEEEES---T--TTTTC---C-CTT-TCSEEEEECTTSCHHHHHHHHHT---TCEEEESSSCCC----
T ss_pred HHHHHHHHCCCeEEEEeC---C--CCHHH---H-hhc-cccEEEEecCCCCHHHHHHHHhc---CCCEEEEecCCC----
Confidence 345567788988764322 1 11110 0 012 79999987653222333444433 678999985321
Q ss_pred HhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
.. ++.. +.... ..+..+++.|.+.. .+++.++.|... ..-+.+.|++.|..+. ++.....
T Consensus 92 ~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~ 159 (277)
T 3cs3_A 92 HR------NIRQ-VLLDNRGGATQAIEQFVNVG--SKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFT 159 (277)
T ss_dssp ST------TEEE-EEECHHHHHHHHHHHHHHTT--CSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSS
T ss_pred CC------CCCE-EEeCcHHHHHHHHHHHHHcC--CceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCC
Confidence 11 2221 22222 23444556666642 478999988753 2335567888888765 2322111
Q ss_pred CCChHH-HHHHcC----CCCEEEEeCHHHHHHHHHHhcccCC---CCCeEEEE
Q 024773 216 HHVDQT-VLKQAL----SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACI 260 (262)
Q Consensus 216 ~~~~~~-~~~~l~----~~d~ivFtS~s~~~~~~~~~~~~~~---~~~~i~~I 260 (262)
.....+ +.+.+. .+|+|+.++-..+..+++.+.+.+. .++.|+++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~ 212 (277)
T 3cs3_A 160 EPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGF 212 (277)
T ss_dssp HHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECS
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 111111 222232 5789999999988889988887652 34555544
No 62
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=93.19 E-value=1 Score=37.38 Aligned_cols=172 Identities=12% Similarity=0.025 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHH-HHHHcCCCCcEEEEeChhHH
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~-~l~~~~~~~~~i~aVG~~Ta 139 (262)
..+.+.++++|+++..... ..+.+.....+.. -..+|+||+.+.+ ...++ .+.+. +++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~~---~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTDH---HIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHHC----CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHcC---CCCEEEEeccCC
Confidence 3455667788998875322 1122211222221 2579999998733 33344 45443 678999887543
Q ss_pred HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
..- .. +.+ . ...+..+++.|.+. ..++++++.|... ..-+.+.|++.|..+.. ..+.
T Consensus 98 ~~~-~V------~~D--~---~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~- 161 (277)
T 3e61_A 98 EHN-GI------STN--H---FKGGQLQAEVVRKG--KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM-LEAT- 161 (277)
T ss_dssp -----------------H---HHHHHHHHHHHHHT--TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE-EEGG-
T ss_pred CCC-eE------Eec--h---HHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc-eecC-
Confidence 211 11 221 1 12345556666664 3478999988754 34466788888888766 3332
Q ss_pred ccCCCChHHHHHHcCCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 213 ~~~~~~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
........+.+..-..+|+|+..+-..+...++.+.+.+ ..++.|+++
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~ 212 (277)
T 3e61_A 162 LLDNDKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGY 212 (277)
T ss_dssp GGGSHHHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred CCCHHHHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 222211111111113899999999999888888887765 245666654
No 63
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=93.16 E-value=0.32 Score=41.49 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=92.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++..... ..+.+...+.+.. -..+|+||+.+... ....++.+.+. ++++++++.....
T Consensus 24 i~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 95 (306)
T 2vk2_A 24 AKSEAEKRGITLKIADG-----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA---EIPVFLLDRSIDV 95 (306)
T ss_dssp HHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHT---TCCEEEESSCCCC
T ss_pred HHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHC---CCCEEEecCCCCC
Confidence 45567778988764321 1122211122221 14699999976532 23344444443 5788888853211
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCC-CCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeec
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNG-KKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~-~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
.-... ++.. +.... ..+..+++.|.+.. .+.+++.++.|... ..-+.+.|++.|. +..+.++.
T Consensus 96 ~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~ 167 (306)
T 2vk2_A 96 KDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQS 167 (306)
T ss_dssp SCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEE
T ss_pred CCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEecc
Confidence 00001 1221 22222 22344556666542 11478999988643 2335667777774 33232222
Q ss_pred cccCCCCh----HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 212 TEPVHHVD----QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 212 ~~~~~~~~----~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
........ .++++.- ..+++|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 168 ~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D 227 (306)
T 2vk2_A 168 GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSID 227 (306)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeec
Confidence 21111111 1122222 3589999999888888888887654 2466676653
No 64
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=92.74 E-value=0.91 Score=38.08 Aligned_cols=175 Identities=10% Similarity=0.080 Sum_probs=92.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
+.+.++++|+++.... ...+.+ .++..+ ...+|+||+.+.. .+...++.+.+. +++++.++...
T Consensus 23 i~~~~~~~g~~~~~~~-----~~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 92 (283)
T 2ioy_A 23 AEEKAKELGYKIIVED-----SQNDSSKELSNVEDLI--QQKVDVLLINPVDSDAVVTAIKEANSK---NIPVITIDRSA 92 (283)
T ss_dssp HHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHH--HTTCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSCC
T ss_pred HHHHHHhcCcEEEEec-----CCCCHHHHHHHHHHHH--HcCCCEEEEeCCchhhhHHHHHHHHHC---CCeEEEecCCC
Confidence 4456677898876432 111221 122222 2579999987542 222334444443 57888888531
Q ss_pred HHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhC-CCeeeEEee
Q 024773 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNT 209 (262)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v~~i~v 209 (262)
. .. .....+....+ .+...++.|.+.....+++.++.|... ..-+.+.|++. |+.+.. +
T Consensus 93 ~----~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~ 160 (283)
T 2ioy_A 93 N----GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--K 160 (283)
T ss_dssp S----SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--E
T ss_pred C----Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--e
Confidence 1 11 11111222222 345555666665222478999988643 23356677776 765532 2
Q ss_pred eccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 210 YTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 210 Y~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
+..........+ +.+.+ ..+++|+..+-..+-..++.+.+.+..++.|+.++
T Consensus 161 ~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~di~viG~D 216 (283)
T 2ioy_A 161 QAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFD 216 (283)
T ss_dssp EECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCccEEEECCchHHHHHHHHHHHCCCCCcEEEEeC
Confidence 211111111111 22222 36899999998888888888877655566666553
No 65
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=92.61 E-value=0.67 Score=39.10 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=92.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
+.+.++++|+++.... .. .+.+.....+.. -..+|+||+.+...- ...++.+. ..++++++++....
T Consensus 42 i~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~---~~~iPvV~~~~~~~-- 111 (293)
T 2iks_A 42 LERQARQRGYQLLIAC---SE--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWA---NDPFPIVALDRALD-- 111 (293)
T ss_dssp HHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTTT---TSSSCEEEEESCCC--
T ss_pred HHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHH---hCCCCEEEECCccC--
Confidence 4456677898876432 11 122211122221 257999999765321 11222222 23678888885321
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|+++|... ..++...
T Consensus 112 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~--~~~~~~~ 178 (293)
T 2iks_A 112 --RE------HFTS-VVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPREV--HFLYANS 178 (293)
T ss_dssp --TT------TCEE-EEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE--EEEEESS
T ss_pred --cC------CCCE-EEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCc--cEEEcCC
Confidence 12 3332 22222 2344556666654 2478999988643 233566788888632 2233221
Q ss_pred cCCCChHH-HHHHcC---CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 214 PVHHVDQT-VLKQAL---SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 214 ~~~~~~~~-~~~~l~---~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.......+ +.+.+. .+++|+..+-..+...++.+.+.+ ..++.|++++
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 179 YEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp SCHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred CChhhHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 11111111 223232 589999999888888888877654 2466777654
No 66
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=92.40 E-value=0.63 Score=41.77 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=91.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 144 (262)
+.+.++++|+++..... . .+.+.++ .+ .-..+|+||+.... ....+.+.+ .+++++.+|......-..
T Consensus 46 i~~~a~~~g~~~~i~~~---~--~~~~~i~-~l-~~~~vDGiIi~~~~--~~~~~~l~~---~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIE---E--DFRARID-KI-KDWLGDGVIADFDD--KQIEQALAD---VDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHTCCEEEEEC---C---CC----------CCCSEEEEETTC--HHHHHHHTT---CCSCEEEEEECCSSGGGS
T ss_pred HHHHHHhcCCCeEEEec---C--Cccchhh-hH-hcCCCCEEEEecCC--hHHHHHHhh---CCCCEEEecCCccccccC
Confidence 34556677988876542 1 1112222 22 23579999995432 223333333 378899988643211011
Q ss_pred hhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCh---------hhHHHHHHhCCCeeeEEeeecccc
Q 024773 145 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 145 ~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~~---------~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
. ++.. +.... ..+...++.|.+.. .+++.++.|.... .-+.+.|++.|.....+ +....
T Consensus 114 ~------~~~~-V~~D~~~~g~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~~~~ 182 (412)
T 4fe7_A 114 P------PVHY-IATDNYALVESAFLHLKEKG--VNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVY--QGLET 182 (412)
T ss_dssp C------SSEE-EEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEE--CCSCS
T ss_pred C------CCCE-EEeCHHHHHHHHHHHHHHcC--CceEEEecccccccccHHHHHHHHHHHHHHHcCCCcccc--ccccc
Confidence 1 3322 22222 34455566666643 4789999887542 23566788888765322 11111
Q ss_pred CCCChH----HH---HHHcCCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVDQ----TV---LKQALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~~----~~---~~~l~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.....+ .+ ++....+|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 183 APENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp SCSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred cccchhhHHHHHHHHHHhCCCCeEEEEEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 111111 12 22124789999999988888888877654 3466666654
No 67
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=92.22 E-value=1.8 Score=37.72 Aligned_cols=174 Identities=11% Similarity=0.054 Sum_probs=90.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... ..+.+.....+.. -..+|+||+.+...-...++.+.+. +++++.++.....
T Consensus 88 i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~---~iPvV~i~~~~~~-- 157 (348)
T 3bil_A 88 IQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQKQ---GMPVVLVDRELPG-- 157 (348)
T ss_dssp HHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHHC----CCEEEESSCCSC--
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhC---CCCEEEEcccCCC--
Confidence 34566678998765422 1122211122221 2579999987654333344444443 5788888853211
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|.... + ++....
T Consensus 158 -~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~-v~~~~~ 225 (348)
T 3bil_A 158 -DS------TIPT-ATSNPQPGIAAAVELLAHNN--ALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ-L-VFLGGY 225 (348)
T ss_dssp -C-------CCCE-EEEECHHHHHHHHHHHHHTT--CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC-E-EECCCS
T ss_pred -CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc-E-EEcCCC
Confidence 02 3322 22222 23455666776643 478999988743 2346677888886322 2 222111
Q ss_pred CCCChHH-HHHHcC--CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 215 VHHVDQT-VLKQAL--SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 215 ~~~~~~~-~~~~l~--~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
......+ +.+.+. .+ +|+..+-..+-..++.+.+.+ ..++.|+.++
T Consensus 226 ~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 226 EQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp SHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred CHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 1111111 222222 36 777778887888888877654 2467777654
No 68
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=91.88 E-value=3.3 Score=34.65 Aligned_cols=183 Identities=8% Similarity=-0.007 Sum_probs=96.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChhHH-
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA- 139 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aVG~~Ta- 139 (262)
+.+.++++|+++..... ....+.+.....+. .....|+||+.+... ....++.+.+. ++++++++....
T Consensus 23 i~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 96 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK---GIYLVNLDEKIDM 96 (288)
T ss_dssp HHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHT---TCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC---CCeEEEECCCCCc
Confidence 45567788988765321 01112221111221 135799999976532 22233444443 678999986422
Q ss_pred HHHHHhhhhcCCCCce-e-ecCCCC-CHHHHHHHhhhCCC-CccEEEEEccCCC-------hhhHHHHHHhC-CCeeeEE
Q 024773 140 SIFEEVIQSSKCSLDV-A-FSPSKA-TGKILASELPKNGK-KKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRL 207 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~-~-~~p~~~-t~e~L~~~l~~~~~-~g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v~~i 207 (262)
...+.. |... . +....+ .+...++.|.+... ..+++.++.|... ..-+.+.|++. |..+..
T Consensus 97 ~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~- 169 (288)
T 1gud_A 97 DNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA- 169 (288)
T ss_dssp HHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE-
T ss_pred cccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE-
Confidence 223333 4332 2 223322 23445566655411 1378999988653 23356678777 765533
Q ss_pred eeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEEC
Q 024773 208 NTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIA 261 (262)
Q Consensus 208 ~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~IG 261 (262)
++..........+ +.+.+ ..+++|+.++-..+-..++.+.+.+. .++.|+.++
T Consensus 170 -~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~~dv~vvGfD 227 (288)
T 1gud_A 170 -SQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTD 227 (288)
T ss_dssp -EEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEES
T ss_pred -eecCCccHHHHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCCCCeEEEEeC
Confidence 2211111111111 22222 36899999999988888888877653 356666653
No 69
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=91.86 E-value=1.7 Score=39.78 Aligned_cols=169 Identities=15% Similarity=0.095 Sum_probs=98.4
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~ 123 (262)
.+...++||++..-. ....+.|++.|+ ++...+- . .+.+++.+ .+.++|++++.|..-+. .+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~---~~~~~d~l~v~~~~~i~~~~l~~~-- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIK---AISSAHIIGIRSRTQLTEEIFAAA-- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHH---HHTTCSEEEECSSCCBCHHHHHHC--
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHH---HccCCEEEEEcCCCCCCHHHHHhC--
Confidence 444467899997643 456678889998 6655431 1 12333333 35789999888754442 222222
Q ss_pred cCCCCcEEE-EeChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh--------h-----------------
Q 024773 124 AGTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------K----------------- 173 (262)
Q Consensus 124 ~~~~~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--------~----------------- 173 (262)
++.+++ +.|-.+ .+++++. |+.+.-.|. ++.+.+++... .
T Consensus 79 ---p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 79 ---NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp ---TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred ---CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 234433 334333 6788889 999866663 45544443211 0
Q ss_pred ---CCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHcCCCCEEEEeCHHH
Q 024773 174 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 174 ---~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-----~~~~~~~l~~~d~ivFtS~s~ 239 (262)
....|+++.+++-..-...+...|+..|++| ..|........ ...+.+.+...|+|++.-|.+
T Consensus 149 ~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V---~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV---RYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 1124678888876666778889999999865 45554322110 112333345789999988765
No 70
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=91.76 E-value=1.9 Score=33.78 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~ 118 (262)
.+.+|++..+..+ ..-+...|+..|++|+.+.... | .+++.+...+ .+.|.|.+++. ..+..++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~--p---~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ--T---PEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC--C---HHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC--C---HHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHH
Confidence 3567777755432 2456778899999999887642 2 2344444433 47888888775 3466677
Q ss_pred HHHHHcCCCCcEEEEeChhHHH---HHHHhhhhcCCCCceeecCCCCCHHHHHHHh
Q 024773 119 EAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l 171 (262)
+.+++.+.++++|++=|....+ .+++. |+...+.|. .+.+..++.+
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~-~~~~~~~~~~ 139 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPG-TSLGEIIEKV 139 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTT-CCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCC-CCHHHHHHHH
Confidence 7777776667889988865543 37777 997545554 3433344443
No 71
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=91.58 E-value=0.71 Score=39.99 Aligned_cols=175 Identities=8% Similarity=-0.045 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++..... ..+.+.....+. .-..+|+||+.....-....+.+... +++++.+|....
T Consensus 83 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 152 (339)
T 3h5o_A 83 GIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQH---ALPVVYMMDLAD-- 152 (339)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHHT---TCCEEEEESCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhcC---CCCEEEEeecCC--
Confidence 355667788988764321 112221122222 13579999998754333344444443 567888764211
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeE-Eeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVR-LNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~-i~vY~~~ 213 (262)
. +.. .+.... ..+...++.|.+. ..+++.++.+... ..-+.+.|++.|..... ..++...
T Consensus 153 ---~------~~~-~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 220 (339)
T 3h5o_A 153 ---D------GRC-CVGFSQEDAGAAITRHLLSR--GKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQP 220 (339)
T ss_dssp ---S------SCC-EEECCHHHHHHHHHHHHHHT--TCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSC
T ss_pred ---C------CCe-EEEECHHHHHHHHHHHHHHC--CCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCC
Confidence 1 111 222222 2344555666664 3478999988642 23366778888873211 1222111
Q ss_pred cCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 214 PVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 214 ~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
.......+ +.+.+ ..+|+|+..+-..+-..++.+.+.+ ..++.|+++
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvgf 274 (339)
T 3h5o_A 221 SSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGF 274 (339)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 11111111 22222 3789999999988888888887765 245666554
No 72
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=91.43 E-value=2.2 Score=32.49 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~ 119 (262)
+++|++...... ..-+...|+..|++|+++-. ..|+ +++.+...+ .+.|.|.+++.. .+..+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~--~~p~---e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV--LSPQ---ELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE--EECH---HHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC--CCCH---HHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHH
Confidence 456777655432 23456789999999998755 2322 333333322 467888777633 2455666
Q ss_pred HHHHcCCCCcEEEEeChh---------HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 120 AWKEAGTPNVRIGVVGAG---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~---------Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+++.+.+++++++=|.. ..+.+++. |+...+.| ..+...+++.+.+
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~~~~-g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRVYAP-GTPPEVGIADLKK 132 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEECCT-TCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEEECC-CCCHHHHHHHHHH
Confidence 777766657888887754 15569999 99875544 3466666666653
No 73
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=91.25 E-value=0.73 Score=35.44 Aligned_cols=119 Identities=9% Similarity=-0.018 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-------E----eeeC-CCchHHHHHHhc--CCCccEEEEeC
Q 024773 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------Q----HAQG-PDTDRLSSVLNA--DTIFDWIIITS 110 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-------~----~~~~-~~~~~l~~~l~~--l~~~d~IiFTS 110 (262)
+....+++|+|.....-...+...|.+.|++|..+-.- . .... .+... ...+.. +..+|+|+.+.
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~-~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAE-FETLKECGMEKADMVFAFT 92 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTS-HHHHHTTTGGGCSEEEECS
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCC-HHHHHHcCcccCCEEEEEe
Confidence 46677899999987655678999999999877654210 0 0000 11111 112222 45789999887
Q ss_pred HHHH--HHHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 111 PEAG--SVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 111 ~~aV--~~f~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
++.- ......+.... ...+++ +-++...+.|++. |.. .+.|....+..+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 93 NDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFII 150 (155)
T ss_dssp SCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHh
Confidence 7532 22233333312 233333 5677888888888 998 78787767777776654
No 74
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=91.23 E-value=0.2 Score=42.31 Aligned_cols=174 Identities=10% Similarity=0.069 Sum_probs=92.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... ..+.+.....++. -..+|+||+.+...-...++.+ .++++++++....
T Consensus 29 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~--- 95 (288)
T 2qu7_A 29 ISHECQKHHLHVAVASS-----EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELE--- 95 (288)
T ss_dssp HHHHHGGGTCEEEEEEC-----TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCS---
T ss_pred HHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccC---
Confidence 34456678987754321 1222211122221 2579999997654211111111 3678888886421
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeee--cc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY--TT 212 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY--~~ 212 (262)
.. ++.. +.... ..+..+++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++ ..
T Consensus 96 -~~------~~~~-V~~d~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~ 165 (288)
T 2qu7_A 96 -ST------SLPS-ITVDNEEAAYIATKRVLES--TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQ 165 (288)
T ss_dssp -SC------CCCE-EEECHHHHHHHHHHHHHTS--SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS
T ss_pred -CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccC
Confidence 11 2222 22222 2344555666664 2478999988643 234567788888776543233 21
Q ss_pred cc----CCCCh-HHHHHHcC-CCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 213 EP----VHHVD-QTVLKQAL-SIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 213 ~~----~~~~~-~~~~~~l~-~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
.. ..... ..+.+.+. .+|+|+..+-..+..+++.+.+.+ ..++.|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 223 (288)
T 2qu7_A 166 QLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFD 223 (288)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEES
T ss_pred CccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeC
Confidence 11 00000 11222222 789999999888888888887654 2466777664
No 75
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=90.72 E-value=0.17 Score=43.03 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=97.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
-+.+.++++|+++..... ..+.+.....+.. -..+|+||+.+...-. . +......+++++++|.....
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~---~~~~~~~~iPvV~~~~~~~~- 104 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-V---DPESGDVSIPTVMINCRPQT- 104 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-C---CCCCTTCCCCEEEEEEECSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH-H---HHHHHhCCCCEEEECCCCCC-
Confidence 456677788998875432 1122211122221 2579999987654211 1 11122247889998864310
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecc-
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT- 212 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~- 212 (262)
.. ++.. +.... ..+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++..
T Consensus 105 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 105 --RE------LLPS-IEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp --TT------SSCE-EEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred --CC------CCCE-EeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 00 1221 22222 2345555666664 3478999988754 23456678888887765444443
Q ss_pred --ccCCCCh---HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC---CCCeEEEE
Q 024773 213 --EPVHHVD---QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACI 260 (262)
Q Consensus 213 --~~~~~~~---~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~---~~~~i~~I 260 (262)
....... +.+.+.+ ..+|+|+..+-..+-..++.+.+.+. .++.|+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~ 232 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGF 232 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECS
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEe
Confidence 2222211 2233333 37899999999988888888887652 24455543
No 76
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=90.66 E-value=0.86 Score=39.28 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCC--ccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTI--FDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~--~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~ 137 (262)
-+.+.++++|+++..... ..+.+.....+.. ... +|+||+.... .....++.+.+. ++++++++..
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 97 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKA---GAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHH---TCEEEEESCC
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHC---CCeEEEECCC
Confidence 345566778998765421 1222211112211 135 9999987643 233444545443 6789998864
Q ss_pred HHHH-HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhC-CCeeeEE
Q 024773 138 TASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRL 207 (262)
Q Consensus 138 Ta~~-L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~-G~~v~~i 207 (262)
.... ...+ ...++. .+.... ..+..+++.|.+.....+++.++.|... ..-+.+.|++. |+.+..+
T Consensus 98 ~~~~~~~~~---~~~~~~-~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~ 173 (332)
T 2rjo_A 98 PKDLHPWDY---NPNYVA-HLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF 173 (332)
T ss_dssp CTTCCGGGG---TTTEEE-EEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred CCcccchhc---ccceeE-EEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee
Confidence 2210 0001 000121 122222 2345555666663223478999988643 23366788888 8877553
Q ss_pred eeeccccCCCCh----HHHHHH-cCCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEE
Q 024773 208 NTYTTEPVHHVD----QTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI 260 (262)
Q Consensus 208 ~vY~~~~~~~~~----~~~~~~-l~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~I 260 (262)
+......... .++++. -..+|+|+.++-..+-.+++.+.+.+. .++.|+.+
T Consensus 174 --~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~g~~~al~~~G~~~di~vvg~ 230 (332)
T 2rjo_A 174 --QVADWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMALGAIEALRAEGLAGQIPVTGM 230 (332)
T ss_dssp --EECTTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECS
T ss_pred --ccCCCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHHHHHHHHHHcCCCCCCEEEee
Confidence 2211111111 112222 125899999998888888888876543 24555543
No 77
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.64 E-value=2.6 Score=31.49 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeC--CCchHHHHHHhcCCCccEEEEeCHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (262)
.+++|+|+....-...+++.|.+.|++|..+-.- ..... .+.+.+.+ . .+.++|+++.+.++--
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-L-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-S-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-C-CcccCCEEEEecCCHH
Confidence 3578999877555678889999999887654211 11111 11111111 1 3467899999887543
Q ss_pred HHH--HHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 115 SVF--LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 115 ~~f--~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
.+. ...+++.+...+-.-+-++.-.+.|++. |.+..+.|+...+..+...+.
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 322 2334444522333335666777889988 998778887777777776654
No 78
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=90.37 E-value=0.24 Score=43.56 Aligned_cols=146 Identities=10% Similarity=0.051 Sum_probs=84.4
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 024773 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (262)
Q Consensus 100 l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g 178 (262)
-..+|+||+.+...-...++.+.+. +++++++|.... .. ++.. +.... ..+...++.|.+.. .
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~ 189 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRAR---GLPAVIADQPAR----EE------GMPF-IAPNNRKAIAPAAQALIDAG--H 189 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHH---TCCEEEESSCCS----CT------TCCE-EEECHHHHTHHHHHHHHHTT--C
T ss_pred hCCCCEEEEecCCCChHHHHHHHHC---CCCEEEECCccC----CC------CCCE-EEeChHHHHHHHHHHHHHCC--C
Confidence 3679999998764434444445444 578999986321 12 3332 22222 23445556666643 4
Q ss_pred cEEEEEccC------------------------CChhhHHHHHHhCCCeeeEEeeeccccCC-CChHH-HHHHc---CCC
Q 024773 179 CTVLYPASA------------------------KASNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQT-VLKQA---LSI 229 (262)
Q Consensus 179 ~~vL~~~g~------------------------~~~~~L~~~L~~~G~~v~~i~vY~~~~~~-~~~~~-~~~~l---~~~ 229 (262)
+++.++.+. ....-+.+.|+++|..+....++...... ....+ +.+.+ ..+
T Consensus 190 r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 269 (366)
T 3h5t_A 190 RKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDL 269 (366)
T ss_dssp CSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTC
T ss_pred CcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCC
Confidence 788888731 11244677888888877654333321111 11111 22222 378
Q ss_pred CEEEEeCHHHHHHHHHHhcccC---CCCCeEEEEC
Q 024773 230 PVVAVASPSAVRSWVNLISDTE---QWSNSVACIA 261 (262)
Q Consensus 230 d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~IG 261 (262)
|+|+.++-..+-..++.+.+.+ ..++.|+.++
T Consensus 270 ~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD 304 (366)
T 3h5t_A 270 TAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFD 304 (366)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999999988888888887765 3477777654
No 79
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=90.30 E-value=1.2 Score=32.92 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhc--CCCccEEEEeCHHH
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA 113 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a 113 (262)
+.+++|+|+....-...+.+.|.+.|+++..+-.- .... .+.... ..+.+ +.++|.++.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~-~d~~~~-~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVI-ANATEE-NELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEE-CCTTCH-HHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEE-eCCCCH-HHHHhcCCCCCCEEEECCCCc
Confidence 44678999987555678888999999877643210 0110 111111 12222 35688888887753
Q ss_pred --HH-HHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 114 --GS-VFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 114 --V~-~f~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
.. .....+...+.. +++ +-++...+.+++. |....+.|....+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~~ 137 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSLS 137 (144)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHHh
Confidence 22 233334444432 444 4556666778887 887767776666666665543
No 80
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=90.26 E-value=3.8 Score=30.03 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-----------E--eeeC--CCchHHHHHHhcCCCccEEEEeCHHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----------Q--HAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-----------~--~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV 114 (262)
+++|+|+....-...+.+.|.+.|.+|..+-.- . .... .+.+.+.. ..+.++|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLED--AGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHH--TTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHH--cCcccCCEEEEeeCCch
Confidence 467888866545567778888888766543210 0 0000 01111111 12567899998876532
Q ss_pred H--HHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh
Q 024773 115 S--VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (262)
Q Consensus 115 ~--~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l 171 (262)
. .+...+...+...+-+.+-++...+.+++. |+...+.|+...+..+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~ 134 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLI 134 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHh
Confidence 2 222334444433334445677788888888 99877777766666666555
No 81
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=90.24 E-value=0.93 Score=38.21 Aligned_cols=180 Identities=7% Similarity=0.006 Sum_probs=88.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++..+-. ...+.+.....+.. ...+|+||+... ......++.+.+. ++++++++....
T Consensus 26 ~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~ipvV~~~~~~~- 97 (303)
T 3d02_A 26 VVQAGKEFNLNASQVGP----SSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDA---GIVVLTNESPGQ- 97 (303)
T ss_dssp HHHHHHHTTEEEEEECC----SSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHT---TCEEEEESCTTC-
T ss_pred HHHHHHHcCCEEEEECC----CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHC---CCeEEEEecCCC-
Confidence 45566778976653210 01122221122221 257999998754 3333444444443 678999986411
Q ss_pred HHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCCh-------hhHHHHHHhCCCeeeEEe-eec
Q 024773 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN-TYT 211 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~i~-vY~ 211 (262)
... ++.. +.... ..+..+++.|.+.....++++++.|.... .-+.+.|+++|..+..+. .|.
T Consensus 98 --~~~------~~~~-v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 168 (303)
T 3d02_A 98 --PSA------NWDV-EIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMP 168 (303)
T ss_dssp --TTC------SEEE-ESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSCBS
T ss_pred --CCC------ceEE-EecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEeecC
Confidence 111 2221 22222 23455556666522121389888886432 234556765543332222 122
Q ss_pred cccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEEC
Q 024773 212 TEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIA 261 (262)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~IG 261 (262)
.........+ +.+.+ ..+|+|+.++-..+...++.+.+.+. .++.|++++
T Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vig~d 223 (303)
T 3d02_A 169 VAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMM 223 (303)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCCCCCeEEEEeC
Confidence 1111111111 22222 26788888887777778888776543 356666553
No 82
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=90.04 E-value=0.37 Score=40.46 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=91.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~a--V~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++.....- ...+.+...+.+.. -..+|+||+.+... +...++.+.+ .+++++.+|....
T Consensus 29 i~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~- 101 (289)
T 3brs_A 29 AQMAAKEYEIKLEFMAPE---KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKD---AGIKLIVIDSGMK- 101 (289)
T ss_dssp HHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGG---GTCEEEEESSCCS-
T ss_pred HHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCcEEEECCCCC-
Confidence 345667789876543221 01122211112211 25799999976432 2123332222 3688999985321
Q ss_pred HHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeec
Q 024773 141 IFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 141 ~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
.. + +. .+.... ..+..+++.|.+.....+++.++.|... ..-+.+.+++.|..+... +.
T Consensus 102 ---~~------~~~~-~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~ 169 (289)
T 3brs_A 102 ---QD------IADI-TVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YY 169 (289)
T ss_dssp ---SC------CCSE-EEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EE
T ss_pred ---CC------cceE-EEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee--ec
Confidence 11 2 22 233322 2345555666664212479999988643 234566777777654332 21
Q ss_pred cccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCC-CCCeEEEEC
Q 024773 212 TEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIA 261 (262)
Q Consensus 212 ~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~-~~~~i~~IG 261 (262)
.........+ +.+.+ ..+++|+.++-..+...++.+.+.+. .++.|++++
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 170 CDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEECCCcchHHHHHHHHhcCCCCCEEEEEEC
Confidence 1111111111 22222 35899999998888888888876543 356666653
No 83
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=89.86 E-value=0.93 Score=39.53 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=89.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
+.+.++++|+++..... . ..+.+.....+.. -..+|+||+.++. .-......+.. .+++++.++...
T Consensus 83 i~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~---~~iPvV~i~~~~--- 152 (349)
T 1jye_A 83 ILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAAC---TNVPALFLDVSD--- 152 (349)
T ss_dssp HHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHT---TTSCEEESSSCT---
T ss_pred HHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHhh---CCCCEEEEcccC---
Confidence 44566788988764321 1 1111211112221 3579999987432 11222222222 367899998531
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~ 213 (262)
.. ++.. +.... ..+...++.|.+.. .+++.++.|... ..-+.+.|++.|+.+.. ++...
T Consensus 153 --~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~~ 219 (349)
T 1jye_A 153 --QT------PINS-IIFSHEDGTRLGVEHLVALG--HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--EREGD 219 (349)
T ss_dssp --TS------SSCE-EEECHHHHHHHHHHHHHHHT--CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEECC
T ss_pred --CC------CCCE-EEEchHHHHHHHHHHHHHCC--CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--cccCC
Confidence 12 3332 22222 23344455666542 478999988753 23456788888876433 22211
Q ss_pred cCCCCh-HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 214 PVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 214 ~~~~~~-~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
...... ..+.+.+ ..+++|+..+-..+-..++.+.+.+ ..++.|+.+
T Consensus 220 ~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvGf 273 (349)
T 1jye_A 220 WSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGY 273 (349)
T ss_dssp SSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECS
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 111001 1122222 2689999999888888888887664 235555543
No 84
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=89.80 E-value=3 Score=35.53 Aligned_cols=168 Identities=10% Similarity=-0.006 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
-+.+.++++|+++..... ..+.+.....+.. -..+|.||+++..--+.+.+ +.+ ..++++++.++....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~~-~~p~~p~v~id~~~~-- 98 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEEG-----VNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IHN-QYPDVHFVSFNGEVK-- 98 (296)
T ss_dssp HHHHHHHHSCCEEEEECC-----CCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TTT-SCTTSEEEEESCCCC--
T ss_pred HHHHHHHHhCCeEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HHH-HCCCCEEEEEecCcC--
Confidence 445567788987654321 1121211222222 25799999998654333222 111 124788998875311
Q ss_pred HHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC---hhhHHHHHHhCCCeeeEEeeeccccCCCC
Q 024773 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~---~~~L~~~L~~~G~~v~~i~vY~~~~~~~~ 218 (262)
.. .+.. +....+.+.-++-.+..+..+.++|.++.|... ..-+.+.+++.|.. ....+|........
T Consensus 99 --~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 99 --GE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp --SS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred --CC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 12 3322 333443333333333333233589999988643 23456778888876 44445643321111
Q ss_pred -hHH-HHHHcC-CCCEEEEeCHHHHHHHHHHhccc
Q 024773 219 -DQT-VLKQAL-SIPVVAVASPSAVRSWVNLISDT 250 (262)
Q Consensus 219 -~~~-~~~~l~-~~d~ivFtS~s~~~~~~~~~~~~ 250 (262)
..+ ..+.+. .+|+|+..+-..+-..++.+++.
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~Gv~~a~~e~ 203 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQ 203 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHc
Confidence 112 222233 68998888887777777776654
No 85
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=89.79 E-value=1.7 Score=36.27 Aligned_cols=176 Identities=14% Similarity=0.065 Sum_probs=89.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChhHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (262)
+.+.++++|+++.... . ..+.+.....++. ...+|+||+.... .....++.+.+. ++++++++....
T Consensus 24 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~- 94 (290)
T 2fn9_A 24 AKQRAEQLGYEATIFD---S--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEA---GIPVFCVDRGIN- 94 (290)
T ss_dssp HHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHT---TCCEEEESSCCS-
T ss_pred HHHHHHHcCCEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHC---CCeEEEEecCCC-
Confidence 4556778898876432 1 1122211112211 2579999987543 222334444443 678888886421
Q ss_pred HHHHhhhhcCCCCcee-ecCCC-CCHHHHHHHhhhCCC----CccE--EEEEccCCC-------hhhHHHHHHhC-CCee
Q 024773 141 IFEEVIQSSKCSLDVA-FSPSK-ATGKILASELPKNGK----KKCT--VLYPASAKA-------SNEIEEGLSNR-GFEV 204 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~-~~p~~-~t~e~L~~~l~~~~~----~g~~--vL~~~g~~~-------~~~L~~~L~~~-G~~v 204 (262)
.. +.... +.... ..+..+++.|.+... ..++ ++++.|... ..-+.+.|++. |..+
T Consensus 95 ---~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~ 165 (290)
T 2fn9_A 95 ---AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKM 165 (290)
T ss_dssp ---CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEE
T ss_pred ---CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEE
Confidence 11 21111 22222 224445566655411 1355 888887543 23355677777 7665
Q ss_pred eEEeeeccccCCCCh-HHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEE
Q 024773 205 VRLNTYTTEPVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 205 ~~i~vY~~~~~~~~~-~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
.. ++......... ..+.+.+ ..+|+|+..+-..+..+++.+.+.+..++.|+++
T Consensus 166 ~~--~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~ 223 (290)
T 2fn9_A 166 VA--QQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGF 223 (290)
T ss_dssp EE--EEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECC
T ss_pred EE--eccCCCCHHHHHHHHHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEe
Confidence 43 22211111111 1122222 3689999999888888888887654445555544
No 86
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.99 E-value=2.2 Score=33.48 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhC-CCcEEEeceE------------EeeeCCCchHHHHHHhc---CCCccEEEEe
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLI------------QHAQGPDTDRLSSVLNA---DTIFDWIIIT 109 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~-G~~v~~~P~~------------~~~~~~~~~~l~~~l~~---l~~~d~IiFT 109 (262)
..+.+++|+|.....-...+++.|.+. |++|..+-.- ..... |.... ..+.. +.++|+|+.+
T Consensus 35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~-~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISG-DATDP-DFWERILDTGHVKLVLLA 112 (183)
T ss_dssp BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEEC-CTTCH-HHHHTBCSCCCCCEEEEC
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEc-CCCCH-HHHHhccCCCCCCEEEEe
Confidence 346788999997765667899999998 9887654210 00100 11111 12222 5678999998
Q ss_pred CHHH--HHHHHHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 110 SPEA--GSVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 110 S~~a--V~~f~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
+++. .......+...+. ..+++ +.++...+.+++. |....+.|....+..+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~-~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 113 MPHHQGNQTALEQLQRRNY-KGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp CSSHHHHHHHHHHHHHTTC-CSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHH
Confidence 7643 2333444444442 33444 5567788888888 998777776666666766554
No 87
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=88.45 E-value=3.6 Score=30.83 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
.++|+|.....-...+++.|.+.|++|..+-.- ...... ...+..... .+.++|+++.+.++...+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGYEA 85 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChHHH
Confidence 456888877666778889999999887654321 111110 111111111 346799999888766544
Q ss_pred H--HHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh
Q 024773 117 F--LEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (262)
Q Consensus 117 f--~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l 171 (262)
. ...+.... .+.+++ +-.+...+.|++. |.+..+.|+...++.+++.+
T Consensus 86 ~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l 137 (140)
T 3fwz_A 86 GEIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELL 137 (140)
T ss_dssp HHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHh
Confidence 3 22333332 244555 4577888899998 99988888777777777655
No 88
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=88.30 E-value=6.8 Score=29.62 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEece----------------EEeeeC--CCchHHHHHHhcCCCccEEEEeC
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL----------------IQHAQG--PDTDRLSSVLNADTIFDWIIITS 110 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~----------------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS 110 (262)
.+++|+|+....-...+.+.|.+.|++|..+-- +..... .+.+.+.+. .+.+.|+++.+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~ 79 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALS 79 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEec
Confidence 356788887765667888899888988765421 111111 111222221 367899999987
Q ss_pred HHHHHHHH-H-HHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 111 PEAGSVFL-E-AWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 111 ~~aV~~f~-~-~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
++--.+.. . .+++.. ...+++ +-++...+.|++. |....+.|....++.+.+.+.
T Consensus 80 ~~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 80 DNDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp SCHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 65433332 2 223331 233444 4577778889888 998777776666666666553
No 89
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=87.54 E-value=1.1 Score=38.70 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEe-ChhHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAGTA 139 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aV-G~~Ta 139 (262)
.+.+.++++|+++..... ....-.+.+.....+.. -..+|+||+.+.. .....++.+.+. +++++++ +....
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~~~ 140 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNITTP 140 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCCSC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCCCc
Confidence 345567788988764321 11100122211112221 2579999994322 223344444443 4566666 53210
Q ss_pred -HHH-HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC------hhhHHHHHHhCCCeeeEEeee
Q 024773 140 -SIF-EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (262)
Q Consensus 140 -~~L-~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY 210 (262)
..+ ... ++.. +.... ..+..+++.|.+.....+++.++.|... ..-+.+.|++.|. +....++
T Consensus 141 ~~~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~ 212 (342)
T 1jx6_A 141 VREWDKHQ------PFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAY 212 (342)
T ss_dssp BGGGTTSC------CSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEE
T ss_pred ccccccCC------CceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEe
Confidence 000 011 2322 22322 2345556666664212488999988754 2345567777775 4433333
Q ss_pred ccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEE
Q 024773 211 TTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 211 ~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
..........+ +.+.+ ..+++|+..+-..+-..++.+.+.+..++.|+++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~di~vvg~ 266 (342)
T 1jx6_A 213 YTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGW 266 (342)
T ss_dssp CCCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHHHHHHHTCTTSEEBCS
T ss_pred cCCCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHHHHHHcCCCCcEEEEe
Confidence 32211111111 22222 3689999999988888888877654434554443
No 90
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=86.98 E-value=6.7 Score=33.68 Aligned_cols=147 Identities=17% Similarity=0.024 Sum_probs=83.6
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 024773 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (262)
Q Consensus 101 ~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g 178 (262)
...+.||- .+..........+.+. +++++..+..+. .+.... ..-..+.|.. .....+++.+.+. ..
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~--g~ 139 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGTS-IITERS-----PYIVRTSFTLAQSSIIIGDWAAKN--GI 139 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCG-GGGGGC-----TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCCh-hhccCC-----CCEEEecCChHHHHHHHHHHHHHc--CC
Confidence 57888884 4555666666666655 566776654222 121110 2211223322 2345566666654 34
Q ss_pred cEEEEEccCCC-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEE-eCHHHHHHHHHHhccc
Q 024773 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (262)
Q Consensus 179 ~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivF-tS~s~~~~~~~~~~~~ 250 (262)
+++.++..+.. .+.+.+.|++.|..+.....|...... . ....+.+ .+.|+|++ .+...+..+++.+.+.
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d-~-~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~ 217 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPD-F-APFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAER 217 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCC-C-HHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCc-H-HHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHc
Confidence 78877765432 456788899999988766666543322 2 2223333 27888887 6677777888887765
Q ss_pred CCC--CCeEEEE
Q 024773 251 EQW--SNSVACI 260 (262)
Q Consensus 251 ~~~--~~~i~~I 260 (262)
+.. +++++..
T Consensus 218 g~~~~~v~~~~~ 229 (368)
T 4eyg_A 218 GLDKSGIKVIGP 229 (368)
T ss_dssp TGGGTTCEEEEE
T ss_pred CCCcCCceEEec
Confidence 422 2556543
No 91
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=85.56 E-value=1.8 Score=37.07 Aligned_cols=176 Identities=12% Similarity=0.044 Sum_probs=87.6
Q ss_pred HHHHHHhCCCcEEEe-ceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024773 65 LIKALAKHRIDCLEL-PLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 65 l~~~L~~~G~~v~~~-P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~ 137 (262)
+.+.++++|+++... +. ..+.+ .++..+ ...+|+||+.+.. ++...++.+.+. ++++++++..
T Consensus 25 ~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~li--~~~vdgiii~~~~~~~~~~~~~~a~~~---gipvV~~d~~ 94 (316)
T 1tjy_A 25 AQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNFV--NQGYDAIIVSAVSPDGLCPALKRAMQR---GVKILTWDSD 94 (316)
T ss_dssp HHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHHH--HTTCSEEEECCSSSSTTHHHHHHHHHT---TCEEEEESSC
T ss_pred HHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHH--HcCCCEEEEeCCCHHHHHHHHHHHHHC---cCEEEEecCC
Confidence 445667789776643 11 11222 222233 2579999987542 334444545443 6789988753
Q ss_pred HHHHHHHhhhhcCCCCceee-cCCCC-CHHHHHHHhhhCCC-CccEEEEEccCCCh-------hhHHHHHHhCCCeeeEE
Q 024773 138 TASIFEEVIQSSKCSLDVAF-SPSKA-TGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRL 207 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~-~p~~~-t~e~L~~~l~~~~~-~g~~vL~~~g~~~~-------~~L~~~L~~~G~~v~~i 207 (262)
... . +....+ ..... .+...++.|.+... ..+++.++.|.... +-+.+.|++.+..+..+
T Consensus 95 ~~~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~ 164 (316)
T 1tjy_A 95 TKP----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIV 164 (316)
T ss_dssp CCG----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCC----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEE
Confidence 211 1 111222 22222 23444555555211 34789999886542 23455676543233223
Q ss_pred eeeccccCCCChHH-HHHHc---CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEE
Q 024773 208 NTYTTEPVHHVDQT-VLKQA---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 208 ~vY~~~~~~~~~~~-~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
..+..........+ +.+.+ .++++|+..+-..+-..++.+++.+..++.|+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~g~~~al~~~G~~dv~VvG~ 221 (316)
T 1tjy_A 165 TTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 221 (316)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTCCSCEEEEB
T ss_pred EeccCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHHcCCCCEEEEEe
Confidence 22222111111111 22222 3689999988887777777776654123555543
No 92
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=85.20 E-value=6.6 Score=36.00 Aligned_cols=140 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 024773 62 NGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~ 129 (262)
..++.+.|++.|+++..+|=+. ..+..+ ..+ +.++.+++...-+..++.+-....+.|++.. ++
T Consensus 184 ~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~-~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~--Gi 259 (458)
T 1mio_B 184 MREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKI-EDLKDTGNSDLTLSLGSYASDLGAKTLEKKC--KV 259 (458)
T ss_dssp HHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCH-HHHHTTSSCSEEEEESHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcH-HHHHhhccCCEEEEEchhhHHHHHHHHHHHh--CC
Confidence 3689999999999999876332 222111 112 2345778888988889887777777777642 33
Q ss_pred EEEE----eC-hhHHHHHHHhhhhcCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCChhhHHHHHHhC
Q 024773 130 RIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (262)
Q Consensus 130 ~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~--t~e~L~~~l~~~--~~~g~~vL~~~g~~~~~~L~~~L~~~ 200 (262)
+.+. +| ..|.+.|++..+.. |..+ |+.. .-+.+.+.+.+. ...|+|+++..+....-.|...|.+.
T Consensus 260 P~~~~~~p~G~~~T~~~l~~la~~~--g~~~---~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~el 334 (458)
T 1mio_B 260 PFKTLRTPIGVSATDEFIMALSEAT--GKEV---PASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIEL 334 (458)
T ss_dssp CEEEECCCBHHHHHHHHHHHHHHHH--CCCC---CHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTT
T ss_pred CEEecCCCcCHHHHHHHHHHHHHHH--CCCc---hHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHC
Confidence 4443 44 56777777762111 5431 1100 011222333222 12578998888776667788899999
Q ss_pred CCeeeEEeee
Q 024773 201 GFEVVRLNTY 210 (262)
Q Consensus 201 G~~v~~i~vY 210 (262)
|+++..+.+.
T Consensus 335 G~~vv~v~~~ 344 (458)
T 1mio_B 335 GAIPKYVVTG 344 (458)
T ss_dssp TCEEEEEEES
T ss_pred CCEEEEEEeC
Confidence 9988665543
No 93
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=84.68 E-value=18 Score=30.95 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=83.3
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g 178 (262)
...|.||.. +..........+.+. +++++..+... ..+.... .+ ..-..+.+.. ..+..+++.+.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGA-DIITRAM--CA-PNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCC-GGGGTTT--CC-TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCC-hhhcccC--CC-CCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 378999875 344555556666655 56777766422 2222210 00 1111122322 2345566666664 34
Q ss_pred cEEEEEccCCC-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEE-eCHHHHHHHHHHhccc
Q 024773 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (262)
Q Consensus 179 ~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivF-tS~s~~~~~~~~~~~~ 250 (262)
+++.++..+.. .+.+.+.|++.|..+.....|..... .. ....+.+ .+.|+|++ .+...+..+++.+.+.
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-d~-~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~ 229 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV-EF-QSALAEIASLKPDCVYAFFSGGGALKFIKDYAAA 229 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC-CC-HHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHT
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc-cH-HHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78888765432 45677889999998766555653322 22 2223333 27888888 7888888888888775
Q ss_pred CCCCCeEEE
Q 024773 251 EQWSNSVAC 259 (262)
Q Consensus 251 ~~~~~~i~~ 259 (262)
+. +++++.
T Consensus 230 g~-~vp~~~ 237 (375)
T 4evq_A 230 NL-GIPLWG 237 (375)
T ss_dssp TC-CCCEEE
T ss_pred CC-CceEEe
Confidence 42 355554
No 94
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=83.32 E-value=6.1 Score=32.87 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|...- +.. ...+++...+...+..+..+ +|+..+++.+++.
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG--RST--ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 3478999999988764 4678999999999876431 110 11122223333332223333 3688899988876
Q ss_pred HHHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCh-
Q 024773 121 WKEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS- 190 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~- 190 (262)
+.+. +.-+.-|.+.| +.+.+.+++. +.+.+...-...+.++..+.+. .+.+++++.+..+.
T Consensus 82 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~~~~ 152 (262)
T 3pk0_A 82 AVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGI-------FAVNVNGTFYAVQACLDALIAS--GSGRVVLTSSITGPI 152 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECCSBTTT
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEechhhcc
Confidence 6543 32233444444 2244444444 2222221111223333444332 24688888764331
Q ss_pred --------------------hhHHHHHHhCCCeeeEEee
Q 024773 191 --------------------NEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 191 --------------------~~L~~~L~~~G~~v~~i~v 209 (262)
..|..++...|++|..+..
T Consensus 153 ~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~P 191 (262)
T 3pk0_A 153 TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMP 191 (262)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEe
Confidence 2345566667888766543
No 95
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=83.30 E-value=1.2 Score=37.48 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEeChhHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV--~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (262)
-+.+.++++|+++..+.. ....+.+.....++. -..+|+||+.....- ...++.+. .++++++++....
T Consensus 26 g~~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~----~~iPvV~~~~~~~ 98 (304)
T 3o1i_D 26 GMVSEAEKQGVNLRVLEA---GGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV----GNTPVFATVNQLD 98 (304)
T ss_dssp HHHHHHHHHTCEEEEEEC---SSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT----TTSCEEECSSCCC
T ss_pred HHHHHHHHcCCeEEEEcC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc----CCCCEEEecCCCc
Confidence 344566778987765432 110122211122211 147999999875443 33344333 4788999864321
Q ss_pred HHHHHhhhhcCCCCceeec-CCC-CCHHHHHHHhhhCCC---CccEEEEEccCCC-------hhhHHHHHHhCCCeeeEE
Q 024773 140 SIFEEVIQSSKCSLDVAFS-PSK-ATGKILASELPKNGK---KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRL 207 (262)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~-p~~-~t~e~L~~~l~~~~~---~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i 207 (262)
...... +.....+ ... ..+..+++.|.+... ..+++.++.|... ..-+.+.|++.|+.+...
T Consensus 99 ~~~~~~------~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 172 (304)
T 3o1i_D 99 LDEEQS------TLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDS 172 (304)
T ss_dssp CCTTTG------GGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEEC
T ss_pred ccccCC------CceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEe
Confidence 000001 1111222 222 234455566665541 1468999988643 234556677777666442
Q ss_pred eeeccccCCCChHH-HHH--HcCCCCEEEEeCHHHHHHHHHHhcccCC
Q 024773 208 NTYTTEPVHHVDQT-VLK--QALSIPVVAVASPSAVRSWVNLISDTEQ 252 (262)
Q Consensus 208 ~vY~~~~~~~~~~~-~~~--~l~~~d~ivFtS~s~~~~~~~~~~~~~~ 252 (262)
+..........+ +.+ .-..+++ ++.+-..+...++.+.+.+.
T Consensus 173 --~~~~~~~~~~~~~~~~~l~~~~~~a-i~~~d~~a~g~~~al~~~g~ 217 (304)
T 3o1i_D 173 --FWADNDKELQRNLVQRVIDMGNIDY-IVGSAVAIEAAISELRSADK 217 (304)
T ss_dssp --CCCCSCHHHHHHHHHHHHHHSCCSE-EEECHHHHHHHHHHHTTTTC
T ss_pred --ecCCCcHHHHHHHHHHHHcCCCCCE-EEecCcchHHHHHHHHhcCC
Confidence 211111000111 111 2247899 77888888888888877653
No 96
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=83.26 E-value=7.8 Score=32.69 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=85.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~~~l 121 (262)
.|.||++|||....+ ...+++.|.+.|++|...-. .. ...++..+.+.+. ..++..+ |+..+++.+++.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~--~~--~~~~~~~~~l~~~-g~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDI--RA--TLLAESVDTLTRK-GYDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCS--CH--HHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC--CH--HHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 578999999988764 46789999999999875421 10 0012222233332 2344443 6899999999887
Q ss_pred HHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC---
Q 024773 122 KEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--- 189 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~--- 189 (262)
.+. +.-++-|-.-| +.|.+..++. +.+.+...-......+..|.+.. .+.+|+.+.+..+
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~~~-~~G~IVnisS~~~~~~ 152 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKV-------IDTNLTSAFLVSRSAAKRMIARN-SGGKIINIGSLTSQAA 152 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEECCGGGTSB
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHcc-CCCEEEEEeehhhcCC
Confidence 664 21122222222 2344444444 22222211122334444443322 3578888877532
Q ss_pred -----------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 -----------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 -----------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..+|...|++|..+.-
T Consensus 153 ~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~P 189 (255)
T 4g81_D 153 RPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGP 189 (255)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEee
Confidence 45677788899999887754
No 97
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=83.14 E-value=11 Score=30.42 Aligned_cols=167 Identities=8% Similarity=0.039 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (262)
.+.+.++++|+++...+. . .+.+...+.+. .-..+|+||+.+...-. ...+.+. +.+++.+|...
T Consensus 23 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~l~~~---~~pvV~~~~~~--- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES---Q--FSPQLVAEHLGVLKRRNIDGVVLFGFTGIT--EEMLAHW---QSSLVLLARDA--- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHTTTCCEEEEECCTTCC--TTTSGGG---SSSEEEESSCC---
T ss_pred HHHHHHHHcCCEEEEEeC---C--CcHHHHHHHHHHHHhcCCCEEEEecCcccc--HHHHHhc---CCCEEEEcccc---
Confidence 345567788988765432 1 12221112222 23679999998743211 1112222 46788888631
Q ss_pred HHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCC-C-------hhhHHHHHHhCCCeeeEEeeecc
Q 024773 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~-~-------~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
. ++.. +.... ..+..+++.|.+.. .+++.++.|.. . ..-+.+.|++.|..+.. ++.
T Consensus 90 ---~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~~- 154 (255)
T 1byk_A 90 ---K------GFAS-VCYDDEGAIKILMQRLYDQG--HRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--ALP- 154 (255)
T ss_dssp ---S------SCEE-EEECHHHHHHHHHHHHHHTT--CCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--ECC-
T ss_pred ---C------CCCE-EEEccHHHHHHHHHHHHHcC--CCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--eec-
Confidence 2 3332 22222 23455666676643 47899998752 2 23356788888876532 221
Q ss_pred ccCCCChHHH---HHH-c-CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 213 EPVHHVDQTV---LKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 213 ~~~~~~~~~~---~~~-l-~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
....+.. .+. + ..+++|+.++-..+-.+++.+.+.+..++.|++++
T Consensus 155 ---~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di~vig~d 205 (255)
T 1byk_A 155 ---GLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVG 205 (255)
T ss_dssp ---CSCHHHHHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ---CCccchHHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1122211 111 2 36899999999888888888877655567777664
No 98
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=82.85 E-value=9 Score=32.76 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=82.6
Q ss_pred CCCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCC-CceeecCCC-CCHHHHHHHhhhCCC
Q 024773 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 100 l~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
-...|.||.. +..........+.+. +++++..+.. ...+... + .-..+.|.. ..+..+++.+.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAA-HPDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC-CGGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCC-CcccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 3678888875 444555556666554 5677776532 2222222 2 111123332 3456677777665
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHH-HHHHHHHHhc
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s-~~~~~~~~~~ 248 (262)
..+++.++..+. ..+.+.+.|++.|..+.....|..... .. ....+.+ .+.|+|++.+.. .+..++..+.
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-~~-~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR-RF-DDVIDEIEDEAPQAIYLAMAYEDAAPFLRALR 215 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC-CC-HHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCc-cH-HHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 347888775433 245677889999998876666654322 22 2223333 278888887766 7778888877
Q ss_pred ccCCCCCeEE
Q 024773 249 DTEQWSNSVA 258 (262)
Q Consensus 249 ~~~~~~~~i~ 258 (262)
+.+. +++++
T Consensus 216 ~~g~-~~p~~ 224 (358)
T 3hut_A 216 ARGS-ALPVY 224 (358)
T ss_dssp HTTC-CCCEE
T ss_pred HcCC-CCcEE
Confidence 6542 34443
No 99
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=82.83 E-value=22 Score=30.43 Aligned_cols=144 Identities=11% Similarity=-0.003 Sum_probs=81.8
Q ss_pred CCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 024773 101 TIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (262)
Q Consensus 101 ~~~d~Ii-FTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g 178 (262)
+..+.|| ..+..........+.+. +++++..+.. ...+.... ..-..+.|.. ..+..+++.+.+.. ..
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~-~~~~~~~~-----~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 149 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPAST-NPLVTQGR-----KFVSRVCFIDPFQGAAMAVFAYKNL-GA 149 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCC-CGGGTTTC-----SSEEESSCCHHHHHHHHHHHHHHTS-CC
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCC-CccccCCC-----CCEEEEeCCcHHHHHHHHHHHHHhc-CC
Confidence 4589998 45566666666666665 5677776642 22222110 1111122322 23455666664432 23
Q ss_pred cEEEEEccCC------ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEE-eCHHHHHHHHHHhcc
Q 024773 179 CTVLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISD 249 (262)
Q Consensus 179 ~~vL~~~g~~------~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivF-tS~s~~~~~~~~~~~ 249 (262)
+++.++.+.. ..+.+.+.|++.|..+.... |..... .. ....+.+ .+.|+|++ .+...+..++..+.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~~-d~-~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 226 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSGDQ-DF-SAQLSVAMSFNPDAIYITGYYPEIALISRQARQ 226 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTCC-CC-HHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCCc-cH-HHHHHHHHhcCCCEEEEccchhHHHHHHHHHHH
Confidence 7887774321 23567788999999887666 665322 22 2223333 47899988 888888888888876
Q ss_pred cCCCCCeEE
Q 024773 250 TEQWSNSVA 258 (262)
Q Consensus 250 ~~~~~~~i~ 258 (262)
.+. +.+++
T Consensus 227 ~g~-~~~~~ 234 (366)
T 3td9_A 227 LGF-TGYIL 234 (366)
T ss_dssp TTC-CSEEE
T ss_pred cCC-CceEE
Confidence 542 34443
No 100
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=82.49 E-value=5.1 Score=33.65 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=54.2
Q ss_pred cEEEEEccCCC--------hhhHHHHHHhCCCeeeEEeeeccccCCCC------hHHHHHHcCCCCEEEEeCH-------
Q 024773 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------- 237 (262)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~------~~~~~~~l~~~d~ivFtS~------- 237 (262)
.+||++.|... .+.+.+.+++.|++|+.+.+++.-..... ..++.+.+...|+|||.||
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sip 114 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMT 114 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCcc
Confidence 57888888642 23455567778998888887763211111 2334555668999999995
Q ss_pred HHHHHHHHHhccc-----CCCCCeEEEEC
Q 024773 238 SAVRSWVNLISDT-----EQWSNSVACIA 261 (262)
Q Consensus 238 s~~~~~~~~~~~~-----~~~~~~i~~IG 261 (262)
...++|++.+... .+.+.+++.|+
T Consensus 115 a~LKn~iD~l~~~~~~~~~l~gK~v~~v~ 143 (247)
T 2q62_A 115 GIMKAQIDWIPLSTGSIRPTQGKTLAVMQ 143 (247)
T ss_dssp HHHHHHHHTSCSCBTTBCSSTTCEEEEEE
T ss_pred HHHHHHHHHhhhccCcccccCCCEEEEEE
Confidence 6899999988542 14566666654
No 101
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=82.19 E-value=4.9 Score=31.41 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC---CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
..+..++.+.|++.|+.+..+. ..+ ....+...++.+ ..+|.++..+..-.+.|...+++.+.+.-.++.||
T Consensus 70 ~~g~~e~L~~L~~~G~~v~ivT---~~~--~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ig 144 (187)
T 2wm8_A 70 YPEVPEVLKRLQSLGVPGAAAS---RTS--EIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD 144 (187)
T ss_dssp CTTHHHHHHHHHHHTCCEEEEE---CCS--CHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred chhHHHHHHHHHHCCceEEEEe---CCC--ChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEe
Confidence 3456778888999997765432 111 012233334333 34677755666666777777777777666788899
Q ss_pred hhHHH--HHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 136 AGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 136 ~~Ta~--~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
..... ++++. |+.+..+...++.+.+.+.+.++
T Consensus 145 D~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~~ 179 (187)
T 2wm8_A 145 DERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLETF 179 (187)
T ss_dssp SCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHHH
T ss_pred CCccChHHHHHc------CCEEEEECCCCChHHHHHHHHHH
Confidence 77554 56666 99887777777777777666543
No 102
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=82.07 E-value=12 Score=26.92 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~ 124 (262)
....+++||+.-.+.. ...+...|+..|+++... .+.++....+.. ..+|.|+....++.+ ++..+.+.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~~~ 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIKEK 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHHHH
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHHhc
Confidence 3456789999876543 456788888888765422 233333344433 468999933334543 44555554
Q ss_pred CCC-CcEEEEeCh-h---HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhC
Q 024773 125 GTP-NVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (262)
Q Consensus 125 ~~~-~~~i~aVG~-~---Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~ 174 (262)
. +++++++.. . ....+.+. |.. ++..+.. +.+.|...+...
T Consensus 84 --~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 --HSSIVVLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp --STTSEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred --CCCccEEEEeCCCCHHHHHHHHHc------CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 4 567666543 2 23334445 665 4666777 888888877654
No 103
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=81.93 E-value=3.7 Score=35.33 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=54.6
Q ss_pred cEEEEEccCCC--------hhhHHHHHHhCCCeeeEEeeeccccCCC-------ChHHHHHHcCCCCEEEEeCH------
Q 024773 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH-------VDQTVLKQALSIPVVAVASP------ 237 (262)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~i~vY~~~~~~~-------~~~~~~~~l~~~d~ivFtS~------ 237 (262)
.+||++.|... .+.+.+.+++.|++++.+.+++.-.... ...++.+.+...|+|||.||
T Consensus 59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~si 138 (279)
T 2fzv_A 59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQI 138 (279)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCc
Confidence 68888888643 2345566777899888888776421111 12334555668999999995
Q ss_pred -HHHHHHHHHhccc-----CCCCCeEEEEC
Q 024773 238 -SAVRSWVNLISDT-----EQWSNSVACIA 261 (262)
Q Consensus 238 -s~~~~~~~~~~~~-----~~~~~~i~~IG 261 (262)
...++|++.+... .+.+.+++.|+
T Consensus 139 pg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ 168 (279)
T 2fzv_A 139 TSVMKAQIDHLPLEMAGIRPTQGRTLAVMQ 168 (279)
T ss_dssp CHHHHHHHHHSCSCBTTBCSSTTCEEEEEE
T ss_pred CHHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 7899999998642 14466666654
No 104
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=81.70 E-value=20 Score=31.65 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=94.7
Q ss_pred CCCCccchhccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE
Q 024773 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII 107 (262)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii 107 (262)
|-..+=.|+..+ ....++||++.+-. +...+.|++. +++...+. ....+.+++ ...+.++|+++
T Consensus 13 ~~~~~~~~~~~~-------~~~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~l---~~~~~~~d~li 76 (345)
T 4g2n_A 13 LGTENLYFQSMS-------THPIQKAFLCRRFT--PAIEAELRQR-FDLEVNLE---DTVLTPSGI---ASRAHGAEVLF 76 (345)
T ss_dssp ---------------------CCCEEEESSCCC--HHHHHHHHHH-SEEEECTT---CCCCCHHHH---HHHTTTCSEEE
T ss_pred ccccceeeeecc-------cCCCCEEEEeCCCC--HHHHHHHHcc-CCEEEecC---CCCCCHHHH---HHHhcCCeEEE
Confidence 344556677633 12357899998753 4456677665 45543321 111122333 34568899998
Q ss_pred EeCHHHH-HHHHHHHHHcCCCCcEEEE---eC--hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh---------
Q 024773 108 ITSPEAG-SVFLEAWKEAGTPNVRIGV---VG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------- 172 (262)
Q Consensus 108 FTS~~aV-~~f~~~l~~~~~~~~~i~a---VG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~--------- 172 (262)
..+..-+ +.+++.+. +++++++ +| .-..+++++. |+.+.-.|. ++.+.+++...
T Consensus 77 ~~~~~~i~~~~l~~~~----~~Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~ 145 (345)
T 4g2n_A 77 VTATEAITAEVIRKLQ----PGLKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNACRR 145 (345)
T ss_dssp ECTTSCBCHHHHHHTT----TTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHhhc----CCceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHHhC
Confidence 8753333 22333221 2445443 23 2235778888 998876663 45555443311
Q ss_pred -----------h-----------CCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCC-------ChHHHH
Q 024773 173 -----------K-----------NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-------VDQTVL 223 (262)
Q Consensus 173 -----------~-----------~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~-------~~~~~~ 223 (262)
. ....|+++.+++-......+...|+..|++| ..|.+..... ....+.
T Consensus 146 ~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~g~~~~~~l~ 222 (345)
T 4g2n_A 146 GYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAI---HYHNRTRLSHALEEGAIYHDTLD 222 (345)
T ss_dssp HHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEE---EEECSSCCCHHHHTTCEECSSHH
T ss_pred HHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEE---EEECCCCcchhhhcCCeEeCCHH
Confidence 0 1124678888877666778999999999865 4555433210 001233
Q ss_pred HHcCCCCEEEEeCHHH
Q 024773 224 KQALSIPVVAVASPSA 239 (262)
Q Consensus 224 ~~l~~~d~ivFtS~s~ 239 (262)
+.+...|+|+..-|.+
T Consensus 223 ell~~sDvV~l~~Plt 238 (345)
T 4g2n_A 223 SLLGASDIFLIAAPGR 238 (345)
T ss_dssp HHHHTCSEEEECSCCC
T ss_pred HHHhhCCEEEEecCCC
Confidence 3345889999988854
No 105
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=81.68 E-value=11 Score=35.18 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=71.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEece-------------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEA 113 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~a 113 (262)
..++|+|+....-...+++.|.+.|..+..+.. +..... .+.+.++ .. .+.++|.++.|....
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~-~a-~i~~a~~vi~t~~D~ 203 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLA-GL-RVAAARSIIANLSDP 203 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHH-HT-TGGGCSEEEECSCHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHH-hc-CcccCCEEEEeCCcH
Confidence 356788888777778888899888887664421 111111 1111121 11 356899999988877
Q ss_pred HHHHHHHHH-HcCCCCcEEEEe--ChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 114 GSVFLEAWK-EAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 114 V~~f~~~l~-~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
...+.-... +.+ +.++++. -+...+.|++. |.+..+.|+...+..|++.+.
T Consensus 204 ~n~~~~~~ar~~~--~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~ 257 (565)
T 4gx0_A 204 DNANLCLTVRSLC--QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRAT 257 (565)
T ss_dssp HHHHHHHHHHTTC--CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhc
Confidence 665544332 233 5666654 46778889998 998777777666677766554
No 106
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=80.72 E-value=7.3 Score=33.45 Aligned_cols=166 Identities=10% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchH-HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~-l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
-+.+.++++|+++..+.. ....+..+ ++... . ..+|.||+++..--+.+.....+. ++++++.++.....
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~-~-~~~dgIi~~~~~~~~~~~~~a~~~--p~~p~v~id~~~~~-- 98 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---STDAEYVPSLSAFA-D-ENMGLVVACGSFLVEAVIETSARF--PKQKFLVIDAVVQD-- 98 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHH-H-TTCSEEEEESTTTHHHHHHHHHHC--TTSCEEEESSCCCS--
T ss_pred HHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHH-H-cCCCEEEECChhHHHHHHHHHHHC--CCCEEEEEcCccCC--
Confidence 345566788987654422 11111111 22222 2 569999999864434433333322 36788888753110
Q ss_pred HHhhhhcCCCCceeecCCCCCHHHHH----HHhhhCCCCc--cEEEEEccCCC------hhhHHHHHHhCCCeeeEEeee
Q 024773 143 EEVIQSSKCSLDVAFSPSKATGKILA----SELPKNGKKK--CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~t~e~L~----~~l~~~~~~g--~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY 210 (262)
.. .+.. +....+.+.-++ ..+.+ .| ++|.++.|... ..-+.+.+++.|..+....+|
T Consensus 99 -~~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~ 167 (318)
T 2fqx_A 99 -RD------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEV 167 (318)
T ss_dssp -CT------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CC------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 11 2222 222333333332 33433 34 59999988642 223456777777766666666
Q ss_pred ccccCCC-ChHHH-HHHc-CCCCEEEEeCHHHHHHHHHHhcc
Q 024773 211 TTEPVHH-VDQTV-LKQA-LSIPVVAVASPSAVRSWVNLISD 249 (262)
Q Consensus 211 ~~~~~~~-~~~~~-~~~l-~~~d~ivFtS~s~~~~~~~~~~~ 249 (262)
....... ...+. .+.+ ..+|+|+..+-..+-..++.+++
T Consensus 168 ~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~Gv~~a~~e 209 (318)
T 2fqx_A 168 ANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARD 209 (318)
T ss_dssp CSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHHh
Confidence 5432211 11122 2223 36899988887766666666655
No 107
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=80.58 E-value=2.5 Score=35.75 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=56.3
Q ss_pred CCCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Ccc
Q 024773 27 PLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFD 104 (262)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d 104 (262)
+.++++-+|+... ..+...+.||++|||..... ...+++.|.+.|++|+..- +.....+++...+...+ ...
T Consensus 12 ~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~----r~~~~~~~~~~~~~~~~~~~~ 85 (275)
T 4imr_A 12 DLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHG----VKPGSTAAVQQRIIASGGTAQ 85 (275)
T ss_dssp ------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE----SSTTTTHHHHHHHHHTTCCEE
T ss_pred Ccccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc----CCHHHHHHHHHHHHhcCCeEE
Confidence 3455666666532 22335689999999988764 4679999999999876431 11112233333333221 222
Q ss_pred EEE--EeCHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 105 WII--ITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 105 ~Ii--FTS~~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
.+. +++...++.+++.+.+.+.-+.-|.+.|
T Consensus 86 ~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg 118 (275)
T 4imr_A 86 ELAGDLSEAGAGTDLIERAEAIAPVDILVINAS 118 (275)
T ss_dssp EEECCTTSTTHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEecCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 221 4678888888887766542234444444
No 108
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=80.50 E-value=2.5 Score=34.26 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=45.4
Q ss_pred cEEEEEccCCC------------hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeC-------HHH
Q 024773 179 CTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSA 239 (262)
Q Consensus 179 ~~vL~~~g~~~------------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS-------~s~ 239 (262)
.++|++-|.-. .+.+.+.+++.|.+|+.+.+|+. ....++.+.+...|.|||.+ |..
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~----~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~ 88 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSD----YDVKAEVQNFLWADVVIWQMPGWWMGAPWT 88 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSC----CCHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCcc----ccHHHHHHHHHhCCEEEEECCccccCCCHH
Confidence 56766665433 23455667777999999999862 23445566677899999988 578
Q ss_pred HHHHHHHh
Q 024773 240 VRSWVNLI 247 (262)
Q Consensus 240 ~~~~~~~~ 247 (262)
.+.|++.+
T Consensus 89 LK~~iDrv 96 (204)
T 2amj_A 89 VKKYIDDV 96 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999863
No 109
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=80.40 E-value=22 Score=33.09 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCCCCCCeEEE-eCCCCChHHHHHHHHhCCCcEEEe
Q 024773 45 SASNSNPKVVV-TRERGKNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 45 ~~~l~g~~VLi-tR~~~~~~~l~~~L~~~G~~v~~~ 79 (262)
.+||.|.||.. .-...+...|.+.|.+.|++|...
T Consensus 70 ~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~ 105 (494)
T 3d64_A 70 QQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWA 105 (494)
T ss_dssp TCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEE
Confidence 58999999998 444556788999999999999743
No 110
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=80.07 E-value=17 Score=30.78 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCc--eeecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD--VAFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~--~~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
+..|.||-. +..........+.+. +++++..+.. . +... +.. ..+.+.. ..+..+++.+.+.
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~-- 133 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPE------RAKWSVVMPQPIPIMGKVLYEHMKKN-- 133 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTT------TTTTEEECSCCHHHHHHHHHHHHHHT--
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccC------CCCcEEecCCChHHHHHHHHHHHHhc--
Confidence 468999864 444455555656555 4566666543 1 1111 111 1122322 3345566666654
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeC-HHHHHHHHHHhc
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS-~s~~~~~~~~~~ 248 (262)
..+++.++..+. ..+.+.+.|++.|..+.....|..... .. ....+.+ .+.|+|++.+ ...+-.+++.+.
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-~~-~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~ 211 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDT-SV-AGQALKLVAANPDAILVGASGTAAALPQTTLR 211 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS-CC-HHHHHHHHHHCCSEEEEECCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCC-CH-HHHHHHHHhcCCCEEEEecCcchHHHHHHHHH
Confidence 347888775543 245677889999998766556654322 22 2222223 2789998888 788888888887
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 212 ~~g 214 (362)
T 3snr_A 212 ERG 214 (362)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 111
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=79.86 E-value=6.5 Score=32.44 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=43.0
Q ss_pred hHHHHHHhC-CCeeeEEeeeccccC-----------------C--CChHHHHHHcCCCCEEEEeCH-------HHHHHHH
Q 024773 192 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSWV 244 (262)
Q Consensus 192 ~L~~~L~~~-G~~v~~i~vY~~~~~-----------------~--~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~ 244 (262)
.+.+.|++. |.+|+.+.+|+.... . ....++.+.+...|+|||.|| ..++.|+
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~i 102 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFI 102 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHH
Confidence 344455555 788877777653211 1 222344555668999999995 7889999
Q ss_pred HHhccc----CCCCCeEEEE
Q 024773 245 NLISDT----EQWSNSVACI 260 (262)
Q Consensus 245 ~~~~~~----~~~~~~i~~I 260 (262)
+.+... .+.+.++++|
T Consensus 103 Dr~~~~~~~~~l~gK~~~~i 122 (242)
T 1sqs_A 103 ERIGGWSHLFRLAGKFVVTL 122 (242)
T ss_dssp HHTGGGTTTTTTTTCEEEEE
T ss_pred HHHHHhccccccCCCEEEEE
Confidence 987421 1345666655
No 112
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=79.54 E-value=12 Score=31.23 Aligned_cols=84 Identities=8% Similarity=-0.036 Sum_probs=49.9
Q ss_pred CCCCCeEEEeCCC--C-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRER--G-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~--~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l 121 (262)
.+.||+||||... . =...+++.|.+.|++|+..-.- ...+.+++.........++. +|+..+++.+++.+
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-----QFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVEL 97 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCc-----hHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHH
Confidence 4779999999854 2 2467999999999987643211 11122333322333333332 47889999998877
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 98 ~~~~g~id~li~nAg 112 (280)
T 3nrc_A 98 GKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHCSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCc
Confidence 654 22244444444
No 113
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=79.42 E-value=22 Score=30.14 Aligned_cols=193 Identities=10% Similarity=0.022 Sum_probs=96.3
Q ss_pred CeEEEeCCCCC------hHHHHHHHHhCCCc----EEEeceEEeeeC-CCchHHHHHHhc--CCCccEEEEeCHHHHHHH
Q 024773 51 PKVVVTRERGK------NGKLIKALAKHRID----CLELPLIQHAQG-PDTDRLSSVLNA--DTIFDWIIITSPEAGSVF 117 (262)
Q Consensus 51 ~~VLitR~~~~------~~~l~~~L~~~G~~----v~~~P~~~~~~~-~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f 117 (262)
.+|-|+.--+. .+-+.+.|++.|+. +.. ...-. .|...+....++ -.++|.|+-....+....
T Consensus 9 ~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~----~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~ 84 (302)
T 3lkv_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF----DYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQAL 84 (302)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE----EEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHHH
T ss_pred ceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE----EEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHH
Confidence 46777754331 13477888888864 332 22222 233333333322 267998887777776665
Q ss_pred HHHHHHcCCCCcEEEEeCh---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-----
Q 024773 118 LEAWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (262)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~----- 189 (262)
... . .+++|+..|- ..+...... ...|-.+.-+.+....+..++.+.+.....+++.++.....
T Consensus 85 ~~~---~--~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~ 156 (302)
T 3lkv_A 85 VSA---T--KTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHH---C--SSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred Hhh---c--CCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHH
Confidence 442 1 2456554432 111111111 00132222223334456666777665544577766654321
Q ss_pred -hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHH-cCCCCEEEEeCHHHHHHHHHHhcccC-CCCCeEEE
Q 024773 190 -SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVAC 259 (262)
Q Consensus 190 -~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~-l~~~d~ivFtS~s~~~~~~~~~~~~~-~~~~~i~~ 259 (262)
.+.+.+.+++.|+++.+..+..... ..+..+. .++.|++....-..+..-.+.+.... ..++++++
T Consensus 157 ~~~~~~~~~~~~g~~~v~~~~~~~~~----~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~ 225 (302)
T 3lkv_A 157 LMELLKLSAAKHGIKLVEATALKSAD----VQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFG 225 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSGGG----HHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCEEEEEecCChHH----HHHHHHhccCCeeEEEEeCCcchhhHHHHHHHHHhhcCCceee
Confidence 4456777888998776554433221 2222222 35889887776555444333332211 23556654
No 114
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=79.36 E-value=12 Score=31.83 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=46.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||+||||..... ...+++.|.+.|++|+..- + .....+++.+.+...+..+..+ +++..+++.+++.
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~--r--~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA--R--SPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--S--SGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE--C--CHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 3467999999988764 4679999999999877531 1 1111233333343322123333 3788999988887
Q ss_pred HHH
Q 024773 121 WKE 123 (262)
Q Consensus 121 l~~ 123 (262)
+.+
T Consensus 113 ~~~ 115 (293)
T 3rih_A 113 VVD 115 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 115
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=78.55 E-value=5.6 Score=32.46 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=50.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEE----eCHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVFL 118 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~IiF----TS~~aV~~f~ 118 (262)
..+.|+++|||..... ...+++.|.+.|++|+..- +. ....+++...+.... ....+.+ ++..+++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~--r~--~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG--RT--EASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SC--HHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--cC--HHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 4578999999988764 4678999999999876431 11 011122333333332 2223322 7888999888
Q ss_pred HHHHHc-CCCCcEEEEeC
Q 024773 119 EAWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 119 ~~l~~~-~~~~~~i~aVG 135 (262)
+.+.+. +.-+.-|.+.|
T Consensus 86 ~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 86 ARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 876543 22234444444
No 116
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=78.21 E-value=2.1 Score=34.64 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=48.5
Q ss_pred EEEEEccCCC------hhhHHHHHHhCCCeeeEEeeeccccCCC-ChHHHHHHcCCCCEEEEeCH-------HHHHHHHH
Q 024773 180 TVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASP-------SAVRSWVN 245 (262)
Q Consensus 180 ~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY~~~~~~~-~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~ 245 (262)
++|++.|.-. ...+.+.+++.|.+|+.+.+|+..+... ...+..+.+...|.|||.|| ...+.|++
T Consensus 3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iD 82 (192)
T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLD 82 (192)
T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHH
Confidence 4555554322 4456677888898999999998765432 23344555679999999884 78899999
Q ss_pred Hhc
Q 024773 246 LIS 248 (262)
Q Consensus 246 ~~~ 248 (262)
.+-
T Consensus 83 rv~ 85 (192)
T 3f2v_A 83 EVL 85 (192)
T ss_dssp HHS
T ss_pred HHh
Confidence 863
No 117
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=78.17 E-value=4 Score=33.86 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.|+++|||....+ ...+++.|.+.|++|+..- + .....+++...+...+ ...++. +|+..+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~--r--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR--R--NGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEE--S--SGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe--C--CHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 4578999999988764 4679999999999876531 1 1111233333343322 122222 47899999998877
Q ss_pred HHcCCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC----
Q 024773 122 KEAGTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---- 189 (262)
Q Consensus 122 ~~~~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~---- 189 (262)
.+.+.-+.-|.+.| ..+.+.+++. +.+.+...-...+.++..+.+. .+.+++++.+..+
T Consensus 79 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~~~~~~ 149 (252)
T 3h7a_A 79 DAHAPLEVTIFNVGANVNFPILETTDRVFRKV-------WEMACWAGFVSGRESARLMLAH--GQGKIFFTGATASLRGG 149 (252)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEEGGGTCCC
T ss_pred HhhCCceEEEECCCcCCCCCcccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCHHHcCCC
Confidence 66532133333344 2344444444 2222221111223344444332 2468888776432
Q ss_pred ----------------hhhHHHHHHhCCCee
Q 024773 190 ----------------SNEIEEGLSNRGFEV 204 (262)
Q Consensus 190 ----------------~~~L~~~L~~~G~~v 204 (262)
...|..+|...|+.|
T Consensus 150 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 180 (252)
T 3h7a_A 150 SGFAAFASAKFGLRAVAQSMARELMPKNIHV 180 (252)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCEE
Confidence 224556676777776
No 118
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=78.09 E-value=16 Score=26.06 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (262)
...+||+...+.. ...+.+.|++.|+++... .+..+....+.....+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 3578999977643 456888899999876532 23333333443444488887742 23443 4444554
Q ss_pred cCCCCcEEEEeCh-hH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AGTPNVRIGVVGA-GT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~~~~~~i~aVG~-~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
....+.+++.+.. .. ...+.+. |.. ++..+..+.+.|...+.+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHL------GVV-DFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhC------Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 4234667665543 22 3334445 765 4667778999999888754
No 119
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=77.87 E-value=4.4 Score=36.74 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCHHHHHHHhhhC---CCCccEE--EEEccCCC----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEE
Q 024773 162 ATGKILASELPKN---GKKKCTV--LYPASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVV 232 (262)
Q Consensus 162 ~t~e~L~~~l~~~---~~~g~~v--L~~~g~~~----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~i 232 (262)
.+.+.+++.-.++ ....+++ +|-..-+. .+.+.+.|.+.|+.+..+.+|..... ...++.+.+.+.+.+
T Consensus 246 ~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~--~~s~i~~~i~~~~~i 323 (410)
T 4dik_A 246 KDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP--AISEILKDIPDSEAL 323 (410)
T ss_dssp SCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC--CHHHHHHHSTTCSEE
T ss_pred cCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC--CHHHHHHHHHhCCeE
Confidence 3566666554432 2222344 34333332 45677788899988766666654332 235566667799999
Q ss_pred EEeCHH-------HHHHHHHHhcccCCCCCeEEEEC
Q 024773 233 AVASPS-------AVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 233 vFtS~s-------~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
+|-||. .++.|+..+....+.+.+++++|
T Consensus 324 vlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FG 359 (410)
T 4dik_A 324 IFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFG 359 (410)
T ss_dssp EEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEE
Confidence 999985 56667766655445677888877
No 120
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=77.81 E-value=6.9 Score=34.11 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=76.7
Q ss_pred CCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCC-CCCHHHHHHHhhhCCCCc
Q 024773 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (262)
Q Consensus 101 ~~~d~IiFTS~~-aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~-~~t~e~L~~~l~~~~~~g 178 (262)
.+.|+||....+ ........+.+. ++++++++..+. .... .....+.+. ...+..+++.+.+.. +
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERA---DALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHT---TCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHhc---CceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 578999886443 344555555554 567877765210 0001 111112332 234667777776654 4
Q ss_pred cEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeC-HHHHHHHHHHhccc
Q 024773 179 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (262)
Q Consensus 179 ~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS-~s~~~~~~~~~~~~ 250 (262)
+++.++.++. ..+.+.+.|++.|..+.....|.............+.+ .+.|+|++.+ ...+-.+++.+.+.
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~ 220 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARR 220 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHH
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHc
Confidence 7888887653 23456778899998876543332110111111222222 2789999887 56777787777665
Q ss_pred C
Q 024773 251 E 251 (262)
Q Consensus 251 ~ 251 (262)
+
T Consensus 221 G 221 (385)
T 1pea_A 221 Y 221 (385)
T ss_dssp H
T ss_pred C
Confidence 4
No 121
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=77.74 E-value=31 Score=29.20 Aligned_cols=168 Identities=8% Similarity=0.074 Sum_probs=89.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (262)
+.+.++++|+++..... ..+.+.....+.. -..+|+|| .+...-. +.+. ..+++++.++.....
T Consensus 82 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l~---~~~iPvV~~~~~~~~-- 147 (330)
T 3ctp_A 82 IEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEYA---NIDIPVVAFENHILD-- 147 (330)
T ss_dssp HHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGGT---TCCSCEEEESSCCCT--
T ss_pred HHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHHH---hcCCCEEEEeccCCC--
Confidence 44566678988764321 1222211122221 25799999 5432111 1121 236789988864221
Q ss_pred HHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeecccc
Q 024773 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
.. .. +.... ..+..+++.|.+.. .+++.++.|... ..-+.+.|++.|..+. ..+|....
T Consensus 148 -~~--------~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~ 214 (330)
T 3ctp_A 148 -NI--------IT-ISSDNYNGGRMAFDHLYEKG--CRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHDF 214 (330)
T ss_dssp -TS--------CE-EEECHHHHHHHHHHHHHHTT--CCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSC
T ss_pred -CC--------CE-EEeCHHHHHHHHHHHHHHCC--CCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCC
Confidence 11 11 22222 23445556666642 478999988753 2335677888998776 33443221
Q ss_pred CCC----ChHHHHHHcCCCCEEEEeCHHHHHHHHHHhcccC---CCCCeEEEE
Q 024773 215 VHH----VDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACI 260 (262)
Q Consensus 215 ~~~----~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~~---~~~~~i~~I 260 (262)
... ...++++. ..+|+|+..+-..+-..++.+.+.+ ..++.|+.+
T Consensus 215 ~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvvg~ 266 (330)
T 3ctp_A 215 QVKMLEEDINSMKDI-VNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGF 266 (330)
T ss_dssp CGGGGGCCCTTGGGG-GGSSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred CHHHHHHHHHHHhcC-CCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 111 11122222 4689999999888888888887654 235555543
No 122
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=77.46 E-value=16 Score=25.79 Aligned_cols=111 Identities=9% Similarity=0.022 Sum_probs=61.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~ 120 (262)
.++.+++||+...... ...+.+.|++.|+.+... .+.++....+ .-..+|.|+.--. ++.+ ++..
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLK-LLEH 72 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHH-HHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHH
Confidence 5667899999976643 456788899999876532 2333334444 3356898887532 3333 3344
Q ss_pred HHHcCCCCcEEEEe-ChhHHH---HHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhC
Q 024773 121 WKEAGTPNVRIGVV-GAGTAS---IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (262)
Q Consensus 121 l~~~~~~~~~i~aV-G~~Ta~---~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~ 174 (262)
+.+.. .+.+++.+ |....+ .+.+. |... +..+.. +.+.|.+.+...
T Consensus 73 l~~~~-~~~~ii~~t~~~~~~~~~~~~~~------g~~~-~l~KP~~~~~~l~~~i~~~ 123 (130)
T 3eod_A 73 IRNRG-DQTPVLVISATENMADIAKALRL------GVED-VLLKPVKDLNRLREMVFAC 123 (130)
T ss_dssp HHHTT-CCCCEEEEECCCCHHHHHHHHHH------CCSE-EEESCC---CHHHHHHHHH
T ss_pred HHhcC-CCCCEEEEEcCCCHHHHHHHHHc------CCCE-EEeCCCCcHHHHHHHHHHH
Confidence 44433 34555544 433333 34445 7653 555666 667777666543
No 123
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=77.44 E-value=3.4 Score=33.04 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred HHHH-HHhCCCeeeEEeeecccc--------CCCChHHHHHHcCCCCEEEEeCH-------HHHHHHHHHhcccCCCCCe
Q 024773 193 IEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDTEQWSNS 256 (262)
Q Consensus 193 L~~~-L~~~G~~v~~i~vY~~~~--------~~~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~~~~~~~ 256 (262)
+.+. |++.|.+++.+.+++... ......++.+.+...|.|+|.|| ..++.|++.+....+.+.+
T Consensus 25 i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~ 104 (197)
T 2vzf_A 25 ALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKA 104 (197)
T ss_dssp HHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCE
T ss_pred HHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCE
Confidence 3444 565677777766655311 00111223344557899999885 5778888877543345666
Q ss_pred EEEEC
Q 024773 257 VACIA 261 (262)
Q Consensus 257 i~~IG 261 (262)
++.+|
T Consensus 105 ~~~~~ 109 (197)
T 2vzf_A 105 ALPLA 109 (197)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 124
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=77.37 E-value=4.4 Score=34.48 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=46.9
Q ss_pred CCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-------HHHHHHHHH
Q 024773 50 NPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-------PEAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-------~~aV~~f~~ 119 (262)
.++||+.... .....+.+.|++.|++|..++.-..-. +.+ .+.+||.||+.. +..++.+.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~-------~L~~yDvIIl~d~~~~~l~~~~~~~L~~ 74 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGE-------LLAKQDLVILSDYPAERMTAQAIDQLVT 74 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSH-------HHHTCSEEEEESCCGGGBCHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccccc--Chh-------HHhcCCEEEEcCCccccCCHHHHHHHHH
Confidence 4688888543 356779999999999998876543311 111 357899999974 344555555
Q ss_pred HHHHcCCCCcEEEEeCh
Q 024773 120 AWKEAGTPNVRIGVVGA 136 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (262)
.+.+ +--++.+|.
T Consensus 75 yV~~----GGgLi~~gG 87 (259)
T 3rht_A 75 MVKA----GCGLVMLGG 87 (259)
T ss_dssp HHHT----TCEEEEECS
T ss_pred HHHh----CCeEEEecC
Confidence 5543 445666654
No 125
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=77.34 E-value=11 Score=29.57 Aligned_cols=38 Identities=5% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHcCCCCEEEEeCH-------HHHHHHHHHhcccCCCCCeEEEE
Q 024773 222 VLKQALSIPVVAVASP-------SAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 222 ~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
+.+.+...|.|+|.|| ..++.|++.+... +.+.+++.+
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~-l~gK~~~~~ 122 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE-WHGKPALVV 122 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTT-TTTCEEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhh-cCCCEEEEE
Confidence 4445568999999995 6788888887532 344555443
No 126
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=77.26 E-value=5.1 Score=33.99 Aligned_cols=169 Identities=10% Similarity=0.016 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEeChh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~~--aV~~f~~~l~~~~~~~~~i~aVG~~ 137 (262)
-+.+.++++|+++.... ...+.+ .++..+ . ..+|+||+.... +....++.+.+. ++++++++..
T Consensus 24 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~i~~~~-~-~~vdgiIi~~~~~~~~~~~~~~~~~~---giPvV~~~~~ 93 (330)
T 3uug_A 24 NIVKQLQEAGYKTDLQY-----ADDDIPNQLSQIENMV-T-KGVKVLVIASIDGTTLSDVLKQAGEQ---GIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHH-H-HTCSEEEECCSSGGGGHHHHHHHHHT---TCEEEEESSC
T ss_pred HHHHHHHHcCCEEEEee-----CCCCHHHHHHHHHHHH-H-cCCCEEEEEcCCchhHHHHHHHHHHC---CCCEEEECCC
Confidence 35567778899877543 112222 122223 1 469999998765 445555555554 6789999864
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCC-----CCccEEEEEccCCCh-------hhHHHHHHhC---C
Q 024773 138 TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG-----KKKCTVLYPASAKAS-------NEIEEGLSNR---G 201 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~-----~~g~~vL~~~g~~~~-------~~L~~~L~~~---G 201 (262)
... .. ++...+....+ .+..+++.|.+.. ...+++.++.|.... .-+.+.|++. |
T Consensus 94 ~~~---~~------~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~ 164 (330)
T 3uug_A 94 IRN---SG------DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSG 164 (330)
T ss_dssp CCS---CT------TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCC---CC------ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccC
Confidence 321 01 22212222222 2334444444421 123589999887653 2344556554 3
Q ss_pred -CeeeEEe-----eeccccCCCC----hHHHHHHc---CCCCEEEEeCHHHHHHHHHHhcccC
Q 024773 202 -FEVVRLN-----TYTTEPVHHV----DQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE 251 (262)
Q Consensus 202 -~~v~~i~-----vY~~~~~~~~----~~~~~~~l---~~~d~ivFtS~s~~~~~~~~~~~~~ 251 (262)
+.+..-. ++........ ..++++.. ..+++|+.++-..+-..++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 165 KLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp SEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTT
T ss_pred ceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcC
Confidence 3332110 0111111111 11233322 4789999999888888888887765
No 127
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=77.23 E-value=12 Score=29.97 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=64.5
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEece-------------EEeee--CCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQ--GPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~--~~~~~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (262)
|+|+|+....-...+++.|.+.|.++..+-. +.... ..+.+.+.+. .+.++|+++.+.++...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~ 78 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDA--EVSKNDVVVILTPRDEV 78 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHH--TCCTTCEEEECCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhc--CcccCCEEEEecCCcHH
Confidence 3566665544445666666666666554321 00000 0111222221 36789999998876655
Q ss_pred HHHHH-HHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 116 VFLEA-WKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 116 ~f~~~-l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
+..-. ..+......+++ +-++...+.|++. |....+.|+...+..+.+.+.
T Consensus 79 n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 79 NLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 44322 222212344555 4678889999999 998767777666777776654
No 128
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=77.20 E-value=3.7 Score=33.99 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~ 122 (262)
..+.||++|||..... ...+++.|.+.|++|+..-. ..++..+.+ -....++. +|+..+++.+++.+.
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-------~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI-------RGEDVVADL--GDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEES-------SCHHHHHHT--CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC-------chHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999988764 46799999999998875421 112222222 11222221 378889998888776
Q ss_pred HcCCCCcEEEEeC
Q 024773 123 EAGTPNVRIGVVG 135 (262)
Q Consensus 123 ~~~~~~~~i~aVG 135 (262)
+.+.-+.-|.+.|
T Consensus 76 ~~g~id~lv~nAg 88 (257)
T 3tl3_A 76 TMGTLRIVVNCAG 88 (257)
T ss_dssp HHSCEEEEEECGG
T ss_pred HhCCCCEEEECCC
Confidence 6432234444555
No 129
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=77.09 E-value=12 Score=30.26 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=58.1
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-----aV~~f~~ 119 (262)
+.+|++.....+ ..-+...|+.+|++|+.+-. -.| .+++...... .+.|.|.+++.. .++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~--~vp---~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV--DIE---PGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS--SBC---HHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC--CCC---HHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHH
Confidence 457777655432 24567788999999998764 122 2344444433 368898888743 3566666
Q ss_pred HHHHcCC-CCcEEEEeChhHHHHHHHh
Q 024773 120 AWKEAGT-PNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (262)
.+.+.+. ++++|++-|+...+.+.+.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~ 188 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADE 188 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHH
Confidence 7776655 4689999998766555443
No 130
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=77.05 E-value=7.1 Score=33.91 Aligned_cols=165 Identities=14% Similarity=0.051 Sum_probs=89.8
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCc
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~ 129 (262)
++|+++.+.. ....+.|++.|+++...+.- ..+.+++.+ .+.++|+++..+...+ +.+++.+ ++.
T Consensus 1 ~~vl~~~~~~--~~~~~~l~~~g~~v~~~~~~----~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLP--GKALDRLRERGLEVEVHRGL----FLPKAELLK---RVEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCS--SSTTHHHHHTTCEEEECCSS----CCCHHHHHH---HHTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCC--HHHHHHHHhcCCeEEEecCC----CCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 4678876532 22346677888776543211 112233333 3478999886543222 1223322 234
Q ss_pred EEEE---eC--hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----hh---------------------------
Q 024773 130 RIGV---VG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----PK--------------------------- 173 (262)
Q Consensus 130 ~i~a---VG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~~--------------------------- 173 (262)
++++ +| .-..+++++. |+.+.-.|. ++++.+++.. ..
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 4443 22 1234677788 998766554 4444444321 00
Q ss_pred CCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCC--ChHHHHHHcCCCCEEEEeCHHH
Q 024773 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 174 ~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~--~~~~~~~~l~~~d~ivFtS~s~ 239 (262)
....|+++.+++...-...+...|++.|++| .+|.+..... ...++.+.+...|+|++.-|.+
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRV---VYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEE---EEECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 1135678888877666778899999999754 5666544321 1112223345789999987665
No 131
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=76.88 E-value=7.7 Score=32.42 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=79.3
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024773 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~ 120 (262)
+...+.||++|||..... ...+++.|.+.|++|...- ......+++...+ -....++. +|+..+++.+++.
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~----r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~ 78 (271)
T 3tzq_B 5 MTAELENKVAIITGACGGIGLETSRVLARAGARVVLAD----LPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDF 78 (271)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEc----CCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHH
Confidence 345688999999988764 4679999999999876431 1111222222222 11222222 4788899888876
Q ss_pred HHHc-CCCCcEEEEeCh----------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC
Q 024773 121 WKEA-GTPNVRIGVVGA----------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA 189 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG~----------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~ 189 (262)
+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-...+.++..|.+. .+.+++++.+..+
T Consensus 79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~~~ 149 (271)
T 3tzq_B 79 TIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDT-------FTVNARGTMLMCKYAIPRLISA--GGGAIVNISSATA 149 (271)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCGGG
T ss_pred HHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCHHH
Confidence 6543 222333433332 234444444 2222221111223333333332 3578888876432
Q ss_pred --------------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 --------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 --------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
-..|..+|...|++|..+..
T Consensus 150 ~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~P 189 (271)
T 3tzq_B 150 HAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAP 189 (271)
T ss_dssp TSBCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEe
Confidence 12455566667888766543
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=76.61 E-value=20 Score=26.43 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=64.4
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (262)
.+++||+...... ...+.+.|++.|+++... .+.++....+ .-..+|.|++-- .++.+ ++..+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFL-SLTRPDLIISDVLMPEMDGYA-LCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHH-TTCCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 4678999976543 456888898889765432 2334444445 335699988853 23444 3444554
Q ss_pred cC-CCCcEEEEeC-hhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AG-TPNVRIGVVG-AGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~-~~~~~i~aVG-~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. ..+++|+++. ... ...+.+. |.. ++..+..+.+.|...+...
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLEC------GAD-DFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHH------CCS-EEEESSCCHHHHHHHHHHH
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHHH
Confidence 43 2456666543 333 3334445 765 4667778888888776543
No 133
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=76.60 E-value=10 Score=29.47 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=48.7
Q ss_pred ccEEEEEccC-----CChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCH-----HHHHHHHH
Q 024773 178 KCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 245 (262)
Q Consensus 178 g~~vL~~~g~-----~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~-----s~~~~~~~ 245 (262)
..++++.+-. .+...+...|+..|++|..+-... .++++.+.. .+.|+|.+++. ..+..+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~------p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ------TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC------CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 4566665432 246778888999999885544431 233444443 38898888874 34566666
Q ss_pred HhcccCCCCCeEEEECC
Q 024773 246 LISDTEQWSNSVACIAG 262 (262)
Q Consensus 246 ~~~~~~~~~~~i~~IGp 262 (262)
.+++....+++|++=|+
T Consensus 92 ~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 92 KLRELGADDIPVVLGGT 108 (161)
T ss_dssp HHHHTTCTTSCEEEEEC
T ss_pred HHHhcCCCCCEEEEeCC
Confidence 66664344677776553
No 134
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=76.56 E-value=28 Score=34.20 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=71.8
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (262)
..+|++...... ..-....|+..|++|+..+.... .+++.+...+ .+.|.|..+|- ..+..+.+
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT-----PREVAQQAVD-ADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC-----HHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCC-----HHHHHHHHHH-cCCCEEEEeeecHHHHHHHHHHHH
Confidence 457777665432 23456688999999998665321 2333333323 57889888873 35566777
Q ss_pred HHHHcCCCCcEEEEeC--hh-HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 120 AWKEAGTPNVRIGVVG--AG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG--~~-Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+++.+.++++|++=| |. ..+.+++. |+...+.|.. +....++.+.+
T Consensus 678 ~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pgt-d~~e~~~~i~~ 727 (762)
T 2xij_A 678 ELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPGT-RIPKAAVQVLD 727 (762)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTTC-CHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCCC-CHHHHHHHHHH
Confidence 7888887777777765 44 37788999 9987666544 66555555543
No 135
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=75.51 E-value=1.9 Score=32.16 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHHHHHHcCCCCcEEEE
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---------aV~~f~~~l~~~~~~~~~i~a 133 (262)
+.+.+.|++.|++|..+.+-+. +. .++.++|.|+|-|+. .+..|++.+... ..+.++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~----~~-------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV----NI-------DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC----CH-------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC----CH-------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 4456667778887765443221 11 134689999998873 488888887654 56778877
Q ss_pred eC
Q 024773 134 VG 135 (262)
Q Consensus 134 VG 135 (262)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 136
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=75.41 E-value=24 Score=29.52 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=66.6
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (262)
+.+|++..+..+ ..-+...|+.+|++|+.+..- .|. +++...... .+.|.|.+++. ..+..+.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp~---e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHHH
Confidence 567887766532 245677889999999987663 232 334334422 46888888773 33556666
Q ss_pred HHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
.+.+.+.+ ++|++-|....+.+.+.. |... +.+....+-.+++.+.
T Consensus 197 ~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad~-~~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 197 MLLENGIK-IPFACGGGAVNQDFVSQF-----ALGV-YGEEAADAPKIADAII 242 (258)
T ss_dssp HHHTTTCC-CCEEEESTTCCHHHHHTS-----TTEE-ECSSTTHHHHHHHHHH
T ss_pred HHHhcCCC-CcEEEECccCCHHHHHHc-----CCeE-EECCHHHHHHHHHHHH
Confidence 67666554 899999977655554442 7432 4444444445544443
No 137
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=74.79 E-value=12 Score=33.10 Aligned_cols=154 Identities=10% Similarity=-0.007 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--H-HHHHHHHHHcCCCCcEEEE---eCh
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV---VGA 136 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--V-~~f~~~l~~~~~~~~~i~a---VG~ 136 (262)
..+.+.|++.|+++...+--.. +.+++ ...+.++|+++.++... + +.+++ .. ++.++++ +|-
T Consensus 30 l~~~~~L~~~g~ev~~~~~~~~----~~~~~---~~~~~~ad~li~~~~~~~~~~~~~l~---~~--p~Lk~i~~~g~G~ 97 (351)
T 3jtm_A 30 LGIRDWLESQGHQYIVTDDKEG----PDCEL---EKHIPDLHVLISTPFHPAYVTAERIK---KA--KNLKLLLTAGIGS 97 (351)
T ss_dssp GGCHHHHHHTTCEEEEESCCSS----TTSHH---HHHTTTCSEEEECTTSCCCBCHHHHH---HC--SSCCEEEESSSCC
T ss_pred HHHHHHHHHCCCEEEEeCCCCC----CHHHH---HHHhCCCEEEEEccCCCCCCCHHHHh---hC--CCCeEEEEeCeee
Confidence 3578899999999886543221 12233 23468899988754211 1 12222 21 3455554 332
Q ss_pred --hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hhh--------------------------CCCCccEEEEE
Q 024773 137 --GTASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LPK--------------------------NGKKKCTVLYP 184 (262)
Q Consensus 137 --~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~~--------------------------~~~~g~~vL~~ 184 (262)
-..+++++. |+.+.-.|. ++++.+++. +.. ....|+++.++
T Consensus 98 d~id~~~a~~~------gI~V~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGII 170 (351)
T 3jtm_A 98 DHIDLQAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTV 170 (351)
T ss_dssp TTBCHHHHHHT------TCEEEECTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEE
T ss_pred cccCHHHHHhc------CeeEEECCC-cCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEE
Confidence 224678888 998876664 344444322 110 12357888888
Q ss_pred ccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC---------hHHHHHHcCCCCEEEEeCHH
Q 024773 185 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 185 ~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~---------~~~~~~~l~~~d~ivFtS~s 238 (262)
+-......+...|+..|++| ..|.+.+.... ..++.+.+...|+|+++-|.
T Consensus 171 G~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl 230 (351)
T 3jtm_A 171 GAGRIGKLLLQRLKPFGCNL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL 230 (351)
T ss_dssp CCSHHHHHHHHHHGGGCCEE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred EeCHHHHHHHHHHHHCCCEE---EEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence 77766778899999999864 45654332110 01233334589999998885
No 138
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=74.65 E-value=25 Score=30.80 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred ccEEEEEccCC-C-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHH-------HHHHHH
Q 024773 178 KCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWV 244 (262)
Q Consensus 178 g~~vL~~~g~~-~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s-------~~~~~~ 244 (262)
.++++++-+.. + .+.+.+.|.+.|+.++.+.+.+ ....++.+.+...|.|+|.||. .+..|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKA-----CHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHH
Confidence 35655554433 2 2345556777776554444321 1233444455689999999963 577888
Q ss_pred HHhcccCCCCCeEEEEC
Q 024773 245 NLISDTEQWSNSVACIA 261 (262)
Q Consensus 245 ~~~~~~~~~~~~i~~IG 261 (262)
+.+....+.+.+++.+|
T Consensus 327 ~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 327 QYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHTCCCSCEEEEEE
T ss_pred HHhhhcccCCCEEEEEE
Confidence 77654334566776664
No 139
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=74.53 E-value=7.7 Score=31.16 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=49.7
Q ss_pred cEEEEEccCCC----hhhH----HH----HHHhC--CCeeeEEeeeccccC-------CCC---hHHHHHHcCCCCEEEE
Q 024773 179 CTVLYPASAKA----SNEI----EE----GLSNR--GFEVVRLNTYTTEPV-------HHV---DQTVLKQALSIPVVAV 234 (262)
Q Consensus 179 ~~vL~~~g~~~----~~~L----~~----~L~~~--G~~v~~i~vY~~~~~-------~~~---~~~~~~~l~~~d~ivF 234 (262)
+|||++.|... ...| .+ .|++. |++++.+.+++...+ ... ..++.+.+...|.|||
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 67888877644 2222 23 34344 677877777664321 111 1234555568999999
Q ss_pred eCH-------HHHHHHHHHhcccCCCCCeEEEE
Q 024773 235 ASP-------SAVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 235 tS~-------s~~~~~~~~~~~~~~~~~~i~~I 260 (262)
.|| ...++|++.+....+.+.+++.+
T Consensus 92 ~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v 124 (191)
T 3k1y_A 92 ATPVFKASYTGLFKMFFDILDTDALTGMPTIIA 124 (191)
T ss_dssp EEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEE
T ss_pred EcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEE
Confidence 986 57888998886433456666554
No 140
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=74.21 E-value=11 Score=31.06 Aligned_cols=86 Identities=17% Similarity=0.090 Sum_probs=50.0
Q ss_pred CCCCCCeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~ 119 (262)
..+.|++||||... .=...+++.|.+.|++|+..- +.. ...+++...+.....-+..+ +++...++.+++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISD--YHE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEec--CCH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 34779999999874 245789999999999876431 100 01122223332322223333 378899998888
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024773 120 AWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (262)
.+.+. +.-+.-|.+.|
T Consensus 94 ~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 94 QTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCCcEEEECCC
Confidence 76553 22244444444
No 141
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=73.90 E-value=15 Score=32.25 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=47.5
Q ss_pred ccEEEEEccCC-C-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH-------HHHHHHH
Q 024773 178 KCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWV 244 (262)
Q Consensus 178 g~~vL~~~g~~-~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~ 244 (262)
..+++++-+.. + .+.+.+.|.+.|++++.+.+.+. ...++.+.+...|.|+|-|| ..++.|+
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-----~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~l 330 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-----DRSEIVKDILESGAIALGAPTIYDEPYPSVGDLL 330 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-----CHHHHHHHHHTCSEEEEECCEETTEECTHHHHHH
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccccccchHHHHHHH
Confidence 35555544432 2 34455667777776655544322 22344455668999999998 5788898
Q ss_pred HHhcccCC---CCCeEEEEC
Q 024773 245 NLISDTEQ---WSNSVACIA 261 (262)
Q Consensus 245 ~~~~~~~~---~~~~i~~IG 261 (262)
+.+..... .+.+++.+|
T Consensus 331 d~l~~~~~~~l~~k~~~~~~ 350 (404)
T 2ohh_A 331 MYLRGLKFNRTLTRKALVFG 350 (404)
T ss_dssp HHHHHHCGGGTCCEEEEEEE
T ss_pred HHhhhccccccCCCEEEEEE
Confidence 87653222 566766654
No 142
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=73.23 E-value=9.7 Score=30.03 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=47.0
Q ss_pred cEEEEEccCC----ChhhHHHHHHh---CCCeeeEEeeeccccCC----------CChHHHHHHcCCCCEEEEeCH----
Q 024773 179 CTVLYPASAK----ASNEIEEGLSN---RGFEVVRLNTYTTEPVH----------HVDQTVLKQALSIPVVAVASP---- 237 (262)
Q Consensus 179 ~~vL~~~g~~----~~~~L~~~L~~---~G~~v~~i~vY~~~~~~----------~~~~~~~~~l~~~d~ivFtS~---- 237 (262)
.++|++.|.. ....+.+.+.+ .|.+|+.+.+++ .+.- ....++.+.+...|.|+|.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 3666666653 24445554432 356676666665 1110 011223444568899999995
Q ss_pred ---HHHHHHHHHhccc---CCCCCeEEEEC
Q 024773 238 ---SAVRSWVNLISDT---EQWSNSVACIA 261 (262)
Q Consensus 238 ---s~~~~~~~~~~~~---~~~~~~i~~IG 261 (262)
..++.|++.+... .+.+.+++.++
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~ 115 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAILG 115 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEEE
Confidence 6889999988642 24456666553
No 143
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=73.13 E-value=22 Score=29.47 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-ccEEE----EeCHHHHHHHHHHH
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWII----ITSPEAGSVFLEAW 121 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~d~Ii----FTS~~aV~~f~~~l 121 (262)
+.|++||||..... ...+++.|.+.|++|+.+- +.....+.+...+...+. ....+ +++..+++.+++.+
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCA----RTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE----CChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 67899999988654 4678999999999876431 100011222222322221 12222 36788888888765
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 106 ~~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 106 RSQHSGVDICINNAG 120 (279)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 442 22244444554
No 144
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=73.05 E-value=32 Score=29.13 Aligned_cols=138 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCcee--ecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA--FSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~--~~p~~-~t~e~L~~~l~~~~~ 176 (262)
.+.|.||-. +..........+.+. +++++..+.. ...+... +.... +.|.. ..+..+++.+.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAEN---GILEITPAAT-NPVFTER------GLWNTFRTCGRDDQQGGIAGKYLADHF- 136 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTT---TCEEEESSCC-CGGGGSS------CCTTEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhC---CCeEEecCCC-CcHhhcC------CCCcEEEecCChHHHHHHHHHHHHHhc-
Confidence 678998854 444455555555543 5677765542 2223222 32211 22322 23345555555432
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEE-EeCHHHHHHHHHHhc
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~iv-FtS~s~~~~~~~~~~ 248 (262)
..+++.++.++. ..+.+.+.|++.|..+.....|...... . ....+.+ .+.|+|+ +.+...+..++..+.
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d-~-~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 214 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKD-F-SALISKMKEAGVSIIYWGGLHTEAGLIIRQAA 214 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCC-C-HHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCC-H-HHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 247888887653 2446778899999988666666533222 2 2233333 3788888 556677777888776
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 215 ~~g 217 (356)
T 3ipc_A 215 DQG 217 (356)
T ss_dssp HHT
T ss_pred HCC
Confidence 653
No 145
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=72.91 E-value=26 Score=30.54 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=90.3
Q ss_pred CeEEEeCCCCChHHHHHHHHh-C-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 024773 51 PKVVVTRERGKNGKLIKALAK-H-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~-~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~ 127 (262)
++|+++..........+.|++ . |+++...+-. .. ++ ....+.++|+++..+...+ +.+++.+.+.
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~--- 69 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PE---TVALAKGADGVVVYQQLDYIAETLQALADN--- 69 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TT---TGGGGTTCSEEEECCSSCBCHHHHHHHHHT---
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HH---HHHHhcCCcEEEEcCCCCCCHHHHHhcccc---
Confidence 578887554444556666665 3 6666544321 11 11 1223578999887642222 2344444432
Q ss_pred CcEEEE---eC--hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hhh------------------------C
Q 024773 128 NVRIGV---VG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LPK------------------------N 174 (262)
Q Consensus 128 ~~~i~a---VG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~~------------------------~ 174 (262)
+.++++ +| .-..+++++. |+.+.-.|. ++.+.+++. +.. .
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 70 GITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred CCeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 234332 22 1124667888 998866664 454444322 110 0
Q ss_pred CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCC------ChHHHHHHcCCCCEEEEeCHHH
Q 024773 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 175 ~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~------~~~~~~~~l~~~d~ivFtS~s~ 239 (262)
...|+++.+++-..-...+...|+..|++| .+|.+..... ....+.+.+...|+|+..-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKV---ITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEE---EEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 124678888877666778889999999865 4555433210 0001222234789999988854
No 146
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=72.52 E-value=2.4 Score=38.79 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=84.3
Q ss_pred CeEEEeCCCCCh--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCC
Q 024773 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (262)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (262)
.+|-+...-... .++.+.|++.|+++..++... ..++ ++++++.+.-+..++.. ....+.+++.+.+-
T Consensus 184 ~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-----~~~e----i~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~ 253 (437)
T 3aek_A 184 AELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-----RSDI----EPAVGPNTRFILAQPFL-GETTGALERRGAKR 253 (437)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-----SGGG----CCCBCTTCEEEESSTTC-HHHHHHHHHTTCEE
T ss_pred CcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-----CHHH----HHhhhcCcEEEEECccH-HHHHHHHHHcCCCe
Confidence 345544443333 589999999999999766432 1222 34667788888777766 55555554554432
Q ss_pred cEE-EEeC-hhHHHHHHHhhhhcCCCCceeecCCCCCHHH--------HHHHhhhCC--CCccEEEEEccCCChhhHHHH
Q 024773 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKI--------LASELPKNG--KKKCTVLYPASAKASNEIEEG 196 (262)
Q Consensus 129 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~--------L~~~l~~~~--~~g~~vL~~~g~~~~~~L~~~ 196 (262)
... +-+| ..|.+.|++..+. .|.... ..|. +...+.... ..|+|+++..+....-.|...
T Consensus 254 i~~~~P~G~~~T~~~l~~la~~--~g~~~~------~~e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~ 325 (437)
T 3aek_A 254 IAAPFPFGEEGTTLWLKAVADA--YGVSAE------KFEAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARF 325 (437)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHH--TTCCHH------HHHHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHHHHH--HCCChh------hHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHH
Confidence 222 2256 5677777776211 144321 1122 222222211 257899988887777788899
Q ss_pred H-HhCCCeeeEEee
Q 024773 197 L-SNRGFEVVRLNT 209 (262)
Q Consensus 197 L-~~~G~~v~~i~v 209 (262)
| .+.|++|..+.+
T Consensus 326 L~~elG~~vv~~~~ 339 (437)
T 3aek_A 326 LARECGMKTTEIAT 339 (437)
T ss_dssp HHHTTCCEEEEEEE
T ss_pred HHHHcCCEEEEEEe
Confidence 9 899999977765
No 147
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=72.35 E-value=28 Score=29.96 Aligned_cols=138 Identities=13% Similarity=0.034 Sum_probs=78.9
Q ss_pred CCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCce--eecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~Ii-FTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
.+.+.|| ..++.........+.+. +++++..+..+ ..+... ..... .+.+.. .....+++.+.+.
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAA-DQIGGT-----ECNGYGIGFLYNFTSIVKTVVQAQLAK-- 140 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCC-TTTTTT-----TCCSSEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCc-hhhhcc-----cCCCcEEEEeCChHHHHHHHHHHHHHc--
Confidence 5788888 34555555666666655 56777765432 223221 01111 122321 2245566666654
Q ss_pred CccEEEEEccCCC-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCH-HHHHHHHHHhc
Q 024773 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~-s~~~~~~~~~~ 248 (262)
..+++.++..+.. .+.+.+.+++.|.++.....|..... .. ......+ .+.|+|++.+. ..+..++..+.
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-d~-~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 218 (379)
T 3n0w_A 141 GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQ-DF-SSYLLQAKASGAQLIVSTSGGAANINIMKQAR 218 (379)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCC-CC-HHHHHHHHHHTCSEEEECCCHHHHHHHHHHHH
T ss_pred CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCC-CH-HHHHHHHHHCCCCEEEEecccchHHHHHHHHH
Confidence 3478887766542 55677888999998876666664322 22 2222333 27888877655 66777888777
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 219 ~~g 221 (379)
T 3n0w_A 219 EFG 221 (379)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 148
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=72.11 E-value=21 Score=27.81 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.2
Q ss_pred hHHHHHHhCC--CeeeEEeeeccccCCCC---------------h---------HHHHHHcCCCCEEEEeCH-------H
Q 024773 192 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 238 (262)
Q Consensus 192 ~L~~~L~~~G--~~v~~i~vY~~~~~~~~---------------~---------~~~~~~l~~~d~ivFtS~-------s 238 (262)
.+.+.|++.| .+|+.+.+|+...+... . .++.+.+...|.|||.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4455666655 78888888875322111 0 122344568999999995 6
Q ss_pred HHHHHHHHhc
Q 024773 239 AVRSWVNLIS 248 (262)
Q Consensus 239 ~~~~~~~~~~ 248 (262)
.++.|++.+.
T Consensus 104 ~lK~~iD~~~ 113 (201)
T 1t5b_A 104 QLKNYFDLIA 113 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhe
Confidence 8899999876
No 149
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=71.82 E-value=8.1 Score=34.98 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=50.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHcCCCCcEEEEe
Q 024773 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVV 134 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~f~~~l~~~~~~~~~i~aV 134 (262)
++.+++.|.+.|.++..+-++..... +. ...+..+.++|.|+|-||. .+..|+..+......+.++++.
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~~-~~---s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~F 358 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEERP-AI---SEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVF 358 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCCC-CH---HHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCC-CH---HHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEE
Confidence 45678888899998876655544322 22 3345567899999999986 6777777777666667888888
Q ss_pred Ch
Q 024773 135 GA 136 (262)
Q Consensus 135 G~ 136 (262)
|.
T Consensus 359 GS 360 (410)
T 4dik_A 359 GV 360 (410)
T ss_dssp EE
T ss_pred EC
Confidence 84
No 150
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=71.81 E-value=43 Score=28.05 Aligned_cols=138 Identities=9% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCc--eeecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD--VAFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~--~~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
.+.|+||.. +..........+.+. ++++++++... ..+... +.. ..+.|.. ..+..+++.+.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATN-PELTQR------GYQHIMRTAGLDSSQGPTAAKYILETV- 136 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCC-GGGGSS------CCSSEEECSCCGGGHHHHHHHHHHHTT-
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCC-hHHhcC------CCCcEEeccCChHHHHHHHHHHHHHhc-
Confidence 578888875 334444555555554 56787776432 222221 211 1123332 33566667765532
Q ss_pred CccEEEEEccCCC-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeC-HHHHHHHHHHhc
Q 024773 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS-~s~~~~~~~~~~ 248 (262)
..+++.++.++.. .+.+.+.|++.|..+.....|.... ... ....+.+ .+.|+|++.+ ...+..+++.+.
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~-~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 214 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGE-KDF-SALIARLKKENIDFVYYGGYYPEMGQMLRQAR 214 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTC-CCC-HHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCC-cCH-HHHHHHHHhcCCCEEEEcCcchHHHHHHHHHH
Confidence 2478888877532 3456778889998876544454321 122 2222223 3789999888 577777888877
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 215 ~~g 217 (346)
T 1usg_A 215 SVG 217 (346)
T ss_dssp HTT
T ss_pred HcC
Confidence 653
No 151
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=71.79 E-value=8.2 Score=33.49 Aligned_cols=167 Identities=15% Similarity=0.109 Sum_probs=92.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCC
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGT 126 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~ 126 (262)
+..++|+++.+. .....+.|++.|+++.. ....+.+++. ..+.++|+++..+...+ ..+++.+
T Consensus 3 ~~~mkil~~~~~--~~~~~~~l~~~~~~v~~------~~~~~~~~~~---~~~~~~d~~i~~~~~~~~~~~l~~~----- 66 (313)
T 2ekl_A 3 IYTVKALITDPI--DEILIKTLREKGIQVDY------MPEISKEELL---NIIGNYDIIVVRSRTKVTKDVIEKG----- 66 (313)
T ss_dssp CCCCEEEECSCC--CHHHHHHHHHTTCEEEE------CTTCCHHHHH---HHGGGCSEEEECSSSCBCHHHHHHC-----
T ss_pred ccceEEEEECCC--CHHHHHHHHhCCcEEEe------CCCCCHHHHH---HHhcCCeEEEEcCCCCCCHHHHhhC-----
Confidence 456789998753 34556788888866532 1111223332 34578899887643212 1222222
Q ss_pred CCcEEEE-eCh----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hh----h------------------CC
Q 024773 127 PNVRIGV-VGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LP----K------------------NG 175 (262)
Q Consensus 127 ~~~~i~a-VG~----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~----~------------------~~ 175 (262)
++.++++ .|- -..+++.+. |+.+.-.|. ++++.+++. +. . ..
T Consensus 67 ~~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~ 139 (313)
T 2ekl_A 67 KKLKIIARAGIGLDNIDTEEAEKR------NIKVVYAPG-ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLE 139 (313)
T ss_dssp TTCCEEEECSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCC
T ss_pred CCCeEEEEcCCCCCccCHHHHHhC------CeEEEeCCC-CCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCC
Confidence 2444443 221 234677888 998866664 344444322 11 0 12
Q ss_pred CCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-------hHHHHHHcCCCCEEEEeCHHHH
Q 024773 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSAV 240 (262)
Q Consensus 176 ~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-------~~~~~~~l~~~d~ivFtS~s~~ 240 (262)
..|+++.+++-..-...+...|+..|++| .+|.+...... ...+.+.+...|+|+..-|.+.
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~ 208 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGMKV---LAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSK 208 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEE---EEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCT
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCCh
Confidence 35788888877766778899999999865 45654332110 0012222346798988887543
No 152
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=71.79 E-value=2.7 Score=34.89 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=45.5
Q ss_pred cEEEEEccCCC--------hhhHHHHHHhCCCeeeEEeeeccccCCCC------------------------------hH
Q 024773 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------------------------------DQ 220 (262)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~------------------------------~~ 220 (262)
.|+|++.|.-. .+.+.+.|++.|.+|+.+.+|+....+.. ..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 57777766543 23456677778999999999985321100 11
Q ss_pred H---HHHHcCCCCEEEEeCH-------HHHHHHHHHhc
Q 024773 221 T---VLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (262)
Q Consensus 221 ~---~~~~l~~~d~ivFtS~-------s~~~~~~~~~~ 248 (262)
+ ..+.+...|.|||.+| ...+.|++.+-
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 2 2233458999999886 67889998863
No 153
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=71.29 E-value=16 Score=26.31 Aligned_cols=111 Identities=7% Similarity=0.028 Sum_probs=62.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~ 120 (262)
....+.+||+...+.. ...+...|+..|+++... .+.++....+.. ..+|.|++-- .++.+ ++..
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~ 72 (142)
T 3cg4_A 3 LAEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISA--------DSGGQCIDLLKK-GFSGVVLLDIMMPGMDGWD-TIRA 72 (142)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHT-CCCEEEEEESCCSSSCHHH-HHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEe--------CCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHH-HHHH
Confidence 3455788999976543 456888898888764322 233333444433 4688888742 23443 4444
Q ss_pred HHHc-CCCCcEEEEeChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 121 WKEA-GTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+.+. ...+++|+++.... ...+.+. |.. ++..+..+.+.|...+..
T Consensus 73 l~~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 123 (142)
T 3cg4_A 73 ILDNSLEQGIAIVMLTAKNAPDAKMIGLQE------YVV-DYITKPFDNEDLIEKTTF 123 (142)
T ss_dssp HHHTTCCTTEEEEEEECTTCCCCSSTTGGG------GEE-EEEESSCCHHHHHHHHHH
T ss_pred HHhhcccCCCCEEEEECCCCHHHHHHHHhc------Ccc-EEEeCCCCHHHHHHHHHH
Confidence 5542 23467777665432 2223334 554 356667788888776653
No 154
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=71.17 E-value=3.8 Score=34.33 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=85.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEeChh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IiFTS~--~aV~~f~~~l~~~~~~~~~i~aVG~~ 137 (262)
-+.+.++++|+++..+.. .+.+ .++..+ . ..+|+||+... ......++.+.+. ++++++++..
T Consensus 23 gi~~~a~~~g~~~~~~~~------~~~~~~~~~i~~l~-~-~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 91 (306)
T 8abp_A 23 FADKAGKDLGFEVIKIAV------PDGEKTLNAIDSLA-A-SGAKGFVICTPDPKLGSAIVAKARGY---DMKVIAVDDQ 91 (306)
T ss_dssp HHHHHHHHHTEEEEEEEC------CSHHHHHHHHHHHH-H-TTCCEEEEECSCGGGHHHHHHHHHHT---TCEEEEESSC
T ss_pred HHHHHHHHcCCEEEEeCC------CCHHHHHHHHHHHH-H-cCCCEEEEeCCCchhhHHHHHHHHHC---CCcEEEeCCC
Confidence 345566778988764422 1322 232222 2 46999999865 3444445555544 6899999842
Q ss_pred HHHHHHHhhhhcCCCC----ceeecCCCC-CHHHHHHHhhhC-CCCc---cEEEEEc-cCC-------ChhhHHHHHHhC
Q 024773 138 TASIFEEVIQSSKCSL----DVAFSPSKA-TGKILASELPKN-GKKK---CTVLYPA-SAK-------ASNEIEEGLSNR 200 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~----~~~~~p~~~-t~e~L~~~l~~~-~~~g---~~vL~~~-g~~-------~~~~L~~~L~~~ 200 (262)
... .. |. ...+....+ .+...++.|.+. ..++ +++.++. |.. ...-+.+.|+++
T Consensus 92 ~~~---~~------~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~ 162 (306)
T 8abp_A 92 FVN---AK------GKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 162 (306)
T ss_dssp CBC---TT------SCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHH
T ss_pred CCC---cc------ccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHHHhc
Confidence 110 00 10 111222222 233334444432 1111 2666553 332 234466788887
Q ss_pred CCe-eeEEeeeccccCCCCh-HHHHHHc---CCCCE--EEEeCHHHHHHHHHHhcccCCC--CCeEEEE
Q 024773 201 GFE-VVRLNTYTTEPVHHVD-QTVLKQA---LSIPV--VAVASPSAVRSWVNLISDTEQW--SNSVACI 260 (262)
Q Consensus 201 G~~-v~~i~vY~~~~~~~~~-~~~~~~l---~~~d~--ivFtS~s~~~~~~~~~~~~~~~--~~~i~~I 260 (262)
|.. ...+..+......... ..+.+.+ .++++ |+..+-..+-..++.+.+.+.. ++.|+.+
T Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 163 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp TCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred CCCCcEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEe
Confidence 753 2222222211111111 1122223 36787 6666666777777777766532 5555544
No 155
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=70.88 E-value=7.6 Score=28.73 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=5.9
Q ss_pred CCCHHHHHHHhh
Q 024773 161 KATGKILASELP 172 (262)
Q Consensus 161 ~~t~e~L~~~l~ 172 (262)
..+.+.+++.|.
T Consensus 9 tGnT~~iA~~ia 20 (138)
T 5nul_A 9 TGNTEKMAELIA 20 (138)
T ss_dssp SSHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 345555555543
No 156
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=70.79 E-value=25 Score=24.87 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (262)
+.+.+||+.-.... ...+.+.|++.|+. +... .+..+....+.....+|.|+.- ..++.+ +++.+
T Consensus 3 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~-~~~~l 73 (129)
T 3h1g_A 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEA--------EHGVEAWEKLDANADTKVLITDWNMPEMNGLD-LVKKV 73 (129)
T ss_dssp ---CCEEEECSCHHHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHH-HHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEe--------CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 45678999966543 45677888999985 3211 1222222333333468877753 223444 34445
Q ss_pred HHcC-CCCcEEEEeCh----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 122 KEAG-TPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 122 ~~~~-~~~~~i~aVG~----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.+.. ..+.+|+.+.. .......+. |.. ++..+..+.+.|.+.+...
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKA------GVN-NYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHH------TCC-EEEESCCCHHHHHHHHHHH
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHc------Ccc-EEEeCCCCHHHHHHHHHHH
Confidence 4432 24566665542 233344556 765 4677888999998877643
No 157
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=70.49 E-value=8.4 Score=32.97 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCC-C-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-D-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-~-~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (262)
....|+||.+...- ++.+.+.+.++++..+ +..|.+ + .+.....+ +...|++++|...=+..=++.+.+
T Consensus 137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~~--lp~~D~viiTgstlvN~Tl~~lL~ 207 (270)
T 3l5o_A 137 NEVKGKKVGVVGHF----PHLESLLEPICDLSIL---EWSPEEGDYPLPASEFI--LPECDYVYITCASVVDKTLPRLLE 207 (270)
T ss_dssp TTTTTSEEEEESCC----TTHHHHHTTTSEEEEE---ESSCCTTCEEGGGHHHH--GGGCSEEEEETHHHHHTCHHHHHH
T ss_pred cccCCCEEEEECCc----hhHHHHHhcCCCEEEE---ECCCCCCCCChhHHHHh--hccCCEEEEEeehhhcCCHHHHHh
Confidence 44678999998643 3455666677665433 444433 2 12222222 578999999999988776666655
Q ss_pred cCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
...+...++.+||+| ..+-+.|.. |++..---..-+.+.+.+.+.+
T Consensus 208 ~~~~a~~vvl~GPSt-p~~P~lf~~---Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 208 LSRNARRITLVGPGT-PLAPVLFEH---GLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp HTTTSSEEEEESTTC-CCCGGGGGT---TCSEEEEEEESCHHHHHHHHTT
T ss_pred hCCCCCEEEEECCCc-hhhHHHHhc---CcCEEEEEEEcCHHHHHHHHhc
Confidence 543456788999975 334444321 6654221122456777776653
No 158
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=70.40 E-value=18 Score=30.00 Aligned_cols=85 Identities=12% Similarity=-0.016 Sum_probs=53.4
Q ss_pred CCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHH
Q 024773 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLE 119 (262)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~~ 119 (262)
.|.||++|||... .=...+++.|.+.|++|... ++.+ ...+++.+.+.+.+..++..+ |+..+++.+++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFT--YRKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEE--ECCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 5789999999853 22467999999999998754 2211 122445555555554444443 78999998888
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024773 120 AWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (262)
.+.+. +.-+.-|...|
T Consensus 79 ~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHCCCSEEEECCC
T ss_pred HHHHHhCCCCEEEeccc
Confidence 76543 32234444444
No 159
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=70.30 E-value=15 Score=30.73 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
+.||++|||....+ ...+++.|.+.|++|...
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 67999999988765 467899999999999754
No 160
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=70.18 E-value=25 Score=24.67 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l~~~ 124 (262)
+++||+.-.... ...+...|+..|+++... .+..+..+.+ .-..+|.|+.- ..++.+ +...+.+.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~-~~~~l~~~ 71 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFT-VLKKLQEK 71 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHH-HHHHHHTS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHH-HHHHHHhc
Confidence 367888866543 456777888899876432 2333333444 23568887774 223444 33444433
Q ss_pred C-CCCcEEEEeCh----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 125 G-TPNVRIGVVGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 125 ~-~~~~~i~aVG~----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
. ..+.+++.+.. .......+. |.. ++..+..+.+.|...+..
T Consensus 72 ~~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 72 EEWKRIPVIVLTAKGGEEDESLALSL------GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTTSCEEEEESCCSHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCchHHHHHHHhc------Chh-hhccCCCCHHHHHHHHHH
Confidence 2 24566665442 333444455 765 467778899999877754
No 161
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=69.90 E-value=62 Score=29.03 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=94.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHHcCCC
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTP 127 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~~ 127 (262)
.++|+++.+- .....+.|++.|+ ++...+- . .+.+++ +..+.++|++++.|..-+. .+++.+ +
T Consensus 4 ~~kil~~~~~--~~~~~~~l~~~~~~~v~~~~~----~-~~~~~l---~~~~~~~d~l~~~~~~~~~~~~l~~~-----~ 68 (404)
T 1sc6_A 4 KIKFLLVEGV--HQKALESLRAAGYTNIEFHKG----A-LDDEQL---KESIRDAHFIGLRSRTHLTEDVINAA-----E 68 (404)
T ss_dssp SCCEEECSCC--CHHHHHHHHHTTCCCEEECSS----C-CCHHHH---HHHTTSCSEEEECSSCCBCHHHHHHC-----S
T ss_pred ceEEEEeCCC--CHHHHHHHHhCCCcEEEEcCC----C-CCHHHH---HHHhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 3579988653 3445577888888 6765431 1 123333 3456889999887754432 222222 2
Q ss_pred CcEEE-E--eChh--HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----h----h--------------------C
Q 024773 128 NVRIG-V--VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P----K--------------------N 174 (262)
Q Consensus 128 ~~~i~-a--VG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~----~--------------------~ 174 (262)
+.+++ + +|-- -.+++.+. |+.+.-.|. ++.+.+++.. . . .
T Consensus 69 ~Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~ 141 (404)
T 1sc6_A 69 KLVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 141 (404)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC
T ss_pred CCcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCcc
Confidence 34443 2 3322 25678888 998866664 4444443221 0 0 1
Q ss_pred CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHcCCCCEEEEeCHHH
Q 024773 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 175 ~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-----~~~~~~~l~~~d~ivFtS~s~ 239 (262)
...|+++.+++-..-...+...|++.|++| .+|........ ...+.+.+...|+|++.-|.+
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYV---YFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHCCCEE---EEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 235678887776666678899999999876 45554322110 012333345789999988765
No 162
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=69.04 E-value=14 Score=30.47 Aligned_cols=82 Identities=11% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHH-
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA- 139 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta- 139 (262)
.-+.+.++++|..+.....+......+ .+.+...+..-.+.|+|+.++-. .-..++.+.+.+.+++.|+..+....
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~~ 237 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLERN 237 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHHH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHHH
Confidence 346677888888766554443322221 24456666555679999999887 66677888888877888988887653
Q ss_pred HHHHHh
Q 024773 140 SIFEEV 145 (262)
Q Consensus 140 ~~L~~~ 145 (262)
..+-.-
T Consensus 238 ~~~~~~ 243 (304)
T 3gbv_A 238 VTCLKE 243 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 334445
No 163
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=68.97 E-value=56 Score=28.11 Aligned_cols=146 Identities=8% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCcc
Q 024773 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC 179 (262)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g~ 179 (262)
.+.++||-.+..........+.+. +++++..+. +....... .+ .....+.|.. .....+++.+.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~---~~-~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP---NN-DYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS---SC-TTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC---CC-CceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 478888886666666666666665 456666443 22211111 00 1111223332 33455666666532 247
Q ss_pred EEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEE-eCHHHHHHHHHHhcccC
Q 024773 180 TVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDTE 251 (262)
Q Consensus 180 ~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivF-tS~s~~~~~~~~~~~~~ 251 (262)
++.++..+. ..+.+.+.|++.|..+.....|..... .. ......+ .+.|+|++ .+...+-.+++.+.+.+
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-d~-~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g 222 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNL-DN-TALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLG 222 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCC-CC-HHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCc-CH-HHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcC
Confidence 888877543 245678889999998866666654222 22 2222333 37898885 78888888888887654
Q ss_pred CCCCeEE
Q 024773 252 QWSNSVA 258 (262)
Q Consensus 252 ~~~~~i~ 258 (262)
. +.+++
T Consensus 223 ~-~~~~~ 228 (392)
T 3lkb_A 223 L-KMRHL 228 (392)
T ss_dssp C-CCEEE
T ss_pred C-CceEE
Confidence 2 34444
No 164
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=68.89 E-value=67 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.9
Q ss_pred cCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEE
Q 024773 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (262)
..+||.|.||..+-.-. +...|.+.|...|++|..
T Consensus 37 ~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~ 72 (436)
T 3h9u_A 37 PSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRW 72 (436)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEE
Confidence 35999999999886643 567899999999999975
No 165
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=68.27 E-value=23 Score=29.62 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=77.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAWK 122 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l~ 122 (262)
.+.||++|||..... ...+++.|.+.|++|+..- .+.+.+++....+ ....++. +|+..+++.+++.+.
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAG-------RRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATV 97 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHH
Confidence 467899999988764 4679999999999876431 1222333333222 2222222 478889998888765
Q ss_pred Hc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC---
Q 024773 123 EA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--- 189 (262)
Q Consensus 123 ~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~--- 189 (262)
+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.....++..+.+...++.+|+++.+..+
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~ 170 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQV-------VDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP 170 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHH-------HHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC
Confidence 43 322344444442 233444443 2222221111233444444443222578888877532
Q ss_pred -----------------hhhHHHHHHhCCCeeeEEe
Q 024773 190 -----------------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 190 -----------------~~~L~~~L~~~G~~v~~i~ 208 (262)
...|..++...|+.|..+.
T Consensus 171 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 206 (272)
T 4dyv_A 171 RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQID 206 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEE
Confidence 2234455666788776553
No 166
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=68.06 E-value=9 Score=31.18 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=62.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
.++|+|.....-...+++.|.+.|. |..+-. +..... .+.+.+.+. .+.+.|.++.+.++.-.+
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT--TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc--CcchhcEEEEcCCCcHHH
Confidence 4578888765556677778877776 543311 111111 111212111 367899999988765433
Q ss_pred HH--HHHHHcCCCCcEEEE--eChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH
Q 024773 117 FL--EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (262)
Q Consensus 117 f~--~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~ 170 (262)
.. ..+++.+. +.++++ -.+...+.+++. |....+.|+...+..|++.
T Consensus 86 ~~~~~~a~~~~~-~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~ 136 (234)
T 2aef_A 86 IHCILGIRKIDE-SVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 136 (234)
T ss_dssp HHHHHHHHHHCS-SSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-CCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHH
Confidence 32 23334332 445555 366778889988 9987777765555555443
No 167
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=68.04 E-value=3.1 Score=33.69 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (262)
+.||++|||..... ...+++.|.+.|++|...---....+.+.+.+++.+...+..|.+|..-
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nA 67 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTA 67 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECC
Confidence 56899999988764 4678999999999876543211112233444555554555667666543
No 168
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=68.00 E-value=15 Score=29.45 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=26.1
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCCh
Q 024773 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS 190 (262)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~ 190 (262)
.|++.|++++ ++.+.-. ..+.-++++.|......+.++-++.-...-
T Consensus 60 gta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg~~~~~ 106 (196)
T 2q5c_A 60 ATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIAYKHSI 106 (196)
T ss_dssp HHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEEESSCS
T ss_pred hHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEeCcchh
Confidence 4777777763 4444322 356666666665544344566666655443
No 169
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=67.94 E-value=11 Score=29.65 Aligned_cols=83 Identities=6% Similarity=-0.059 Sum_probs=48.4
Q ss_pred CeEEEeCCC----CChHHHHHHHHhC---CCcEEEeceEEeeeCCC--------chHHHHHHhcCCCccEEEEeCH----
Q 024773 51 PKVVVTRER----GKNGKLIKALAKH---RIDCLELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP---- 111 (262)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~~---G~~v~~~P~~~~~~~~~--------~~~l~~~l~~l~~~d~IiFTS~---- 111 (262)
++||+.-.. .....+++.+.+. |.++..+.+.+. |..+ .+.+......+..+|.|||.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~-p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGI-PLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC-CCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHC-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 466655433 3345666666542 677776666542 2111 1234444556678999999995
Q ss_pred ---HHHHHHHHHHHHc---CCCCcEEEEe
Q 024773 112 ---EAGSVFLEAWKEA---GTPNVRIGVV 134 (262)
Q Consensus 112 ---~aV~~f~~~l~~~---~~~~~~i~aV 134 (262)
..++.|++.+... .+.+.+++.+
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~ 114 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAIL 114 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEE
Confidence 6788999887542 1334454443
No 170
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=67.89 E-value=5.9 Score=31.96 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=37.8
Q ss_pred hHHHHHHhC--CCeeeEEeeeccccCCCC-------------------------hHHHHHHcCCCCEEEEeCH-------
Q 024773 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 237 (262)
Q Consensus 192 ~L~~~L~~~--G~~v~~i~vY~~~~~~~~-------------------------~~~~~~~l~~~d~ivFtS~------- 237 (262)
.+.+.|++. |.+|+.+.+|+...+... ..++.+.+...|.|||.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 455667665 889999988875322111 1122344568999999886
Q ss_pred HHHHHHHHHh
Q 024773 238 SAVRSWVNLI 247 (262)
Q Consensus 238 s~~~~~~~~~ 247 (262)
...+.|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6889999987
No 171
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=67.85 E-value=20 Score=29.62 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
...+.||++|||..... ...+++.|.+.|++|...
T Consensus 5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 35688999999988654 467899999999988753
No 172
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=67.39 E-value=42 Score=29.00 Aligned_cols=138 Identities=8% Similarity=-0.072 Sum_probs=79.8
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCCCc
Q 024773 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (262)
Q Consensus 100 l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~~g 178 (262)
-.+.++||-.+..........+.+. +++++..+.. .. +... .......|.. .....+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~-~~-~~~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYS-AK-LLVK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCC-GG-GTTS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccc-hh-hcCC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 3578999886666666666666665 5677765532 22 1111 2211223322 33455666665521 24
Q ss_pred cEEEEEcc-CC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHH--c--CCCCEEEEeCH-HHHHHHHHHh
Q 024773 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSWVNLI 247 (262)
Q Consensus 179 ~~vL~~~g-~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~--l--~~~d~ivFtS~-s~~~~~~~~~ 247 (262)
+++.++.+ +. ..+.+.+.|++.|..+.....|..... ........ + .+.|+|++.+. ..+..+++.+
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~ 219 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRAT--EADAERIAREMLAADPDYVWCGNTISSCSLLGRAM 219 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCC--HHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCc--CHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence 78888877 32 355677888899988766666654221 12222333 3 37898888765 6777777777
Q ss_pred cccC
Q 024773 248 SDTE 251 (262)
Q Consensus 248 ~~~~ 251 (262)
.+.+
T Consensus 220 ~~~g 223 (391)
T 3eaf_A 220 AKVG 223 (391)
T ss_dssp HHHT
T ss_pred HHCC
Confidence 6543
No 173
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=67.25 E-value=15 Score=32.42 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=89.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-HHHHHHHHcCC
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGT 126 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~-~f~~~l~~~~~ 126 (262)
+.+++||++++- .+...+.|++ ++++...+- ..+.++ .+..+.++|+++..+...+. .+++.+
T Consensus 28 ~~~~~vl~~~~~--~~~~~~~L~~-~~~v~~~~~-----~~~~~~---~~~~~~~~d~li~~~~~~i~~~~l~~~----- 91 (340)
T 4dgs_A 28 NVKPDLLLVEPM--MPFVMDELQR-NYSVHRLYQ-----AADRPA---LEAALPSIRAVATGGGAGLSNEWMEKL----- 91 (340)
T ss_dssp -----CEECSCC--CHHHHHTHHH-HSCCEETTC-----GGGHHH---HHHHGGGCCEEEEETTTCBCHHHHHHC-----
T ss_pred CCCCEEEEECCC--CHHHHHHHhc-CCcEEEeCC-----CCCHHH---HHHHhCCcEEEEEcCCCCCCHHHHhhC-----
Confidence 346689999875 3455666754 466654321 112222 33344789999977654332 233322
Q ss_pred CCcEEEE-eCh----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hh----h--------------------
Q 024773 127 PNVRIGV-VGA----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LP----K-------------------- 173 (262)
Q Consensus 127 ~~~~i~a-VG~----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~----~-------------------- 173 (262)
++.++++ .|- -..+++++. |+.+.-.|. .+.+.+++. +. .
T Consensus 92 p~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~ 164 (340)
T 4dgs_A 92 PSLGIIAINGVGTDKVDLARARRR------NIDVTTTPG-VLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLP 164 (340)
T ss_dssp SSCCEEEEESSCCTTBCHHHHHHT------TCEEECCCS-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------C
T ss_pred CCCEEEEECCCCccccCHHHHHhC------CEEEEECCC-CCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcC
Confidence 2344432 232 225678888 998876664 444444322 11 0
Q ss_pred --CCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC----hHHHHHHcCCCCEEEEeCHHH
Q 024773 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV----DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 174 --~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~----~~~~~~~l~~~d~ivFtS~s~ 239 (262)
....|+++.+++-..-...+...|.+.|++| .+|.+...... ...+.+.+...|+|++.-|.+
T Consensus 165 ~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t 233 (340)
T 4dgs_A 165 LGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV---RYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233 (340)
T ss_dssp CCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSCCTTSCCEECSSHHHHHHTCSEEEECC---
T ss_pred ccccccCCEEEEECCCHHHHHHHHHHHHCCCEE---EEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCC
Confidence 0124678888877666778899999999854 56665443211 112334445899999998844
No 174
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=67.05 E-value=12 Score=29.34 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=40.4
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCC----------ChHHHHHHcCCCCEEEEeCH-------HHHHHHHHHhccc---
Q 024773 191 NEIEEGLSNRGFEVVRLNTYTTEPVHH----------VDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDT--- 250 (262)
Q Consensus 191 ~~L~~~L~~~G~~v~~i~vY~~~~~~~----------~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~--- 250 (262)
+.+.+.|++.|++|+.+.+++...... .+....+.+...|.|+|-|| ..++.|++.+...
T Consensus 24 ~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~ 103 (200)
T 2a5l_A 24 RQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLT 103 (200)
T ss_dssp HHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhc
Confidence 345566677787777777766421110 00001233458899999886 5678888876431
Q ss_pred -CCCCCeEEEEC
Q 024773 251 -EQWSNSVACIA 261 (262)
Q Consensus 251 -~~~~~~i~~IG 261 (262)
.+.+.+++.++
T Consensus 104 ~~l~~K~~~~~~ 115 (200)
T 2a5l_A 104 GSLVGKPAAVFT 115 (200)
T ss_dssp TTTTTCEEEEEE
T ss_pred cccCCCEEEEEE
Confidence 13456666553
No 175
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=67.05 E-value=30 Score=30.55 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=46.7
Q ss_pred cEEEEEccCC-C-----hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH-------HHHHHHHH
Q 024773 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVN 245 (262)
Q Consensus 179 ~~vL~~~g~~-~-----~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~ 245 (262)
.+++++-+.. + .+.+.+.|.+.|++++.+.+.+. ....+.+.+...|.|+|.|| ..++.|++
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld 331 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVAAALN 331 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHH
Confidence 4655554433 2 23455667777876655554332 12334445668999999987 47888888
Q ss_pred HhcccCC-CCCeEEEEC
Q 024773 246 LISDTEQ-WSNSVACIA 261 (262)
Q Consensus 246 ~~~~~~~-~~~~i~~IG 261 (262)
.+....+ .+.+++.+|
T Consensus 332 ~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 332 YVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHTTTTTSBEEEEE
T ss_pred HHHhhcccCCCEEEEEE
Confidence 8754334 456666654
No 176
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=66.86 E-value=32 Score=29.35 Aligned_cols=143 Identities=9% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCccEEEE-eCHHHHHHHHH--HHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWIII-TSPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~IiF-TS~~aV~~f~~--~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
...+.||- .+......... .+.+. +++++..+... ..+.+. ..-..+.|.. .....+++.+.+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~f~~~~~~~~~~~~~~~~l~~~-- 139 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGA-SSMTTD------PLVFPIKASYQQEIDKMITALVTI-- 139 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCC-GGGGSC------TTEECCSCCHHHHHHHHHHHHHHT--
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCc-HhhccC------CcEEEeCCChHHHHHHHHHHHHHc--
Confidence 46888885 34455556666 66655 45566554321 112112 2211122322 2345666666643
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEe-CHHHHHHHHHHhc
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFt-S~s~~~~~~~~~~ 248 (262)
..+++.++.++. ..+.+.+.|++.|..+.....|...... . ....+.+ .+.|+|++. +...+..+++.+.
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d-~-~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 217 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTAN-V-GPAVDKLLAADVQAIFLGATAEPAAQFVRQYR 217 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCC-C-HHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCcc-H-HHHHHHHHhCCCCEEEEecCcHHHHHHHHHHH
Confidence 246887776653 2456778899999988766666543222 2 2233333 378888884 4667778888877
Q ss_pred ccCCCCCeEE
Q 024773 249 DTEQWSNSVA 258 (262)
Q Consensus 249 ~~~~~~~~i~ 258 (262)
+.+. +.+++
T Consensus 218 ~~g~-~~~~i 226 (364)
T 3lop_A 218 ARGG-EAQLL 226 (364)
T ss_dssp HTTC-CCEEE
T ss_pred HcCC-CCeEE
Confidence 6542 34444
No 177
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=66.85 E-value=19 Score=30.54 Aligned_cols=71 Identities=11% Similarity=-0.077 Sum_probs=48.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-ccEE--EEeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWI--IITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~d~I--iFTS~~aV~~f~~~l 121 (262)
..|.||.+|||....+ ....++.|.+.|++|...- .+.+.+++..++++. ...+ =.|+...++.+++.+
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~-------r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITG-------RRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHH
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHH
Confidence 6699999999988764 4679999999999987542 123444555444432 2111 147889999988876
Q ss_pred HH
Q 024773 122 KE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 98 ~~ 99 (273)
T 4fgs_A 98 KA 99 (273)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 178
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=66.68 E-value=50 Score=28.18 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCce--eecCCC-CCHHHHHHHhhhCCC
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~t~e~L~~~l~~~~~ 176 (262)
.+.+.||-. +..........+.+. +++++..+.. ...+... ..... .+.+.. .....+++.+.+.
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~-~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~l~~~-- 138 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAG-ADTLTNE-----QCTPYTVHYAYDTMALAKGTGSAVVKQ-- 138 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCC-CGGGGTT-----TCCTTEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCC-chhhhcc-----cCCCcEEEeeCChHHHHHHHHHHHHHc--
Confidence 568888854 445555566666554 5677776543 2222221 01111 122322 2345666666654
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeC-HHHHHHHHHHhc
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS-~s~~~~~~~~~~ 248 (262)
..+++.++..+. ..+.+.+.+++.|..|.....|..... .. ......+ .+.|+|++.+ ...+..+++.+.
T Consensus 139 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-d~-~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 216 (375)
T 3i09_A 139 GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSAS-DF-SSFLLQAQSSKAQILGLANAGGDTVNAIKAAK 216 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCS-CC-HHHHHHHHHTCCSEEEEECCHHHHHHHHHHHH
T ss_pred CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCc-cH-HHHHHHHHhCCCCEEEEecCchhHHHHHHHHH
Confidence 347887776554 245678889999998866666654322 22 2222333 3788886654 446777888776
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 217 ~~g 219 (375)
T 3i09_A 217 EFG 219 (375)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 179
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=66.62 E-value=25 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.|++||||..... ...+++.|.+.|++|..+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999988654 467999999999987643
No 180
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=66.57 E-value=25 Score=27.78 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred EEEEEccCCC----hh----hHHHHHHhCCCeeeEEeeeccccCC------CC---hHHHHHHcCCCCEEEEeCH-----
Q 024773 180 TVLYPASAKA----SN----EIEEGLSNRGFEVVRLNTYTTEPVH------HV---DQTVLKQALSIPVVAVASP----- 237 (262)
Q Consensus 180 ~vL~~~g~~~----~~----~L~~~L~~~G~~v~~i~vY~~~~~~------~~---~~~~~~~l~~~d~ivFtS~----- 237 (262)
|+|++.|... .. .+.+.++ .|.+|+.+.+|+. +.- .. ..++.+.+...|.|||.||
T Consensus 4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~ 81 (192)
T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYA 81 (192)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccC
Confidence 5666666532 12 2334443 4777777777652 210 01 1234555668999999987
Q ss_pred --HHHHHHHHHhcc
Q 024773 238 --SAVRSWVNLISD 249 (262)
Q Consensus 238 --s~~~~~~~~~~~ 249 (262)
...++|++.+..
T Consensus 82 ~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 82 IPGPVKNLLDWLSR 95 (192)
T ss_dssp CCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhhc
Confidence 678999998764
No 181
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=66.39 E-value=50 Score=28.71 Aligned_cols=168 Identities=12% Similarity=0.035 Sum_probs=89.7
Q ss_pred CeEEEeCCCCChHHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024773 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (262)
++|+++..........+.|. ..|+++...+-. .. ++ ....+.++|+++..+...+ +.+++.+... +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--EN---TVEWAKGFDGINSLQTTPYAAGVFEKMHAY---G 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TT---GGGGGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HH---HHHHhcCCeEEEEcCCCCCCHHHHHhCccc---C
Confidence 46888654333344455554 357766544321 11 11 1223578999887643222 2344444442 2
Q ss_pred cEEEE---eC--hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHH----Hhhh-------------------------C
Q 024773 129 VRIGV---VG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS----ELPK-------------------------N 174 (262)
Q Consensus 129 ~~i~a---VG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~----~l~~-------------------------~ 174 (262)
+++++ +| .--.+++++. |+.+.-.|. ++.+.+++ .+.. .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 33332 22 1124677888 998866664 44433332 1110 0
Q ss_pred CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHcCCCCEEEEeCHHHH
Q 024773 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSAV 240 (262)
Q Consensus 175 ~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-----~~~~~~~l~~~d~ivFtS~s~~ 240 (262)
...|+++.+++-..-...+...|+..|++| .+|.+...... ...+.+.+...|+|++.-|.+.
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~ 209 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKV---IAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIE 209 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCG
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEE---EEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCch
Confidence 125678888877666778899999999876 45554332210 0012233457899999887653
No 182
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=66.31 E-value=35 Score=24.86 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~ 120 (262)
..+.+.+||+...+.. ...+...|+..|+++... .+..+....+. -..+|.|++-- .++.+ ++..
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (154)
T 2rjn_A 3 LNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEALK-GTSVQLVISDMRMPEMGGEV-FLEQ 72 (154)
T ss_dssp -CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHHT-TSCCSEEEEESSCSSSCHHH-HHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEecCCCCCCHHH-HHHH
Confidence 4466789999976643 456778888888765422 23333344443 34689988742 23443 3444
Q ss_pred HHHcCCCCcEEEEe-ChhHHHHHHHhhhhcCCC-CceeecCCCCCHHHHHHHhhh
Q 024773 121 WKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 121 l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G-~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+.+.. ++++++.+ +....+...+.+.. | .. ++..+..+.+.|...+..
T Consensus 73 l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~~-~~l~kP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 73 VAKSY-PDIERVVISGYADAQATIDAVNR---GKIS-RFLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp HHHHC-TTSEEEEEECGGGHHHHHHHHHT---TCCS-EEEESSCCHHHHHHHHHH
T ss_pred HHHhC-CCCcEEEEecCCCHHHHHHHHhc---cchh-eeeeCCCCHHHHHHHHHH
Confidence 54433 35666655 43333333332211 4 54 466677888888877754
No 183
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=66.23 E-value=28 Score=23.58 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~l~~~ 124 (262)
+++||+...... ...+...|+..|+++... .+.++....+.. ..+|.+++--. ++. .+.+.+.+.
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~--------~~~~~~~~~l~~-~~~dlii~d~~~~~~~~~-~~~~~l~~~ 70 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWL--------VDGSTALDQLDL-LQPIVILMAWPPPDQSCL-LLLQHLREH 70 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-HCCSEEEEECSTTCCTHH-HHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------cCHHHHHHHHHh-cCCCEEEEecCCCCCCHH-HHHHHHHhc
Confidence 467888866543 456788898889865432 133333334433 36898887532 333 345555554
Q ss_pred C-CCCcEEEEeChhHH-HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 125 G-TPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 125 ~-~~~~~i~aVG~~Ta-~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
. ..+.++++++.... ..+.+. |.. ++..+..+.+.|...+...
T Consensus 71 ~~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp CCCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTT
T ss_pred cccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHH
Confidence 3 24566665543221 144455 665 4667777888888777654
No 184
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=65.79 E-value=8.2 Score=31.83 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=44.1
Q ss_pred cEEEEEccCCC------------hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH-------HH
Q 024773 179 CTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SA 239 (262)
Q Consensus 179 ~~vL~~~g~~~------------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~-------s~ 239 (262)
.++|++-|.-. .+.+.+.|++.|.+|+.+.+++. ....+..+.+...|.|||.+| ..
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~----~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~ 101 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG----YDIESEIENYLWADTIIYQMPAWWMGEPWI 101 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC----CCHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc----cCHHHHHHHHHhCCEEEEECChHhccCCHH
Confidence 46777766542 13455567778999998888862 233444555678999999876 56
Q ss_pred HHHHHHHh
Q 024773 240 VRSWVNLI 247 (262)
Q Consensus 240 ~~~~~~~~ 247 (262)
++.|++.+
T Consensus 102 lK~~iD~v 109 (218)
T 3rpe_A 102 LKKYIDEV 109 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78887765
No 185
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=65.44 E-value=8.7 Score=30.63 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.5
Q ss_pred hhHHHHHHhCC--CeeeEEeee--ccccCCCCh-----------------------------HHHHHHcCCCCEEEEeC-
Q 024773 191 NEIEEGLSNRG--FEVVRLNTY--TTEPVHHVD-----------------------------QTVLKQALSIPVVAVAS- 236 (262)
Q Consensus 191 ~~L~~~L~~~G--~~v~~i~vY--~~~~~~~~~-----------------------------~~~~~~l~~~d~ivFtS- 236 (262)
+.+.+.|++.| .+|+.+.+| +...+.... .++.+.+...|.|||.|
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 35667777776 899999998 654222110 11233345899999999
Q ss_pred ------HHHHHHHHHHhc
Q 024773 237 ------PSAVRSWVNLIS 248 (262)
Q Consensus 237 ------~s~~~~~~~~~~ 248 (262)
|..++.|++.+.
T Consensus 104 ~y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 104 MWNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp CBTTBCCHHHHHHHHHHC
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 678999999864
No 186
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=65.30 E-value=35 Score=30.68 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~-~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
+++|+|.....-...+.+.|.+.|..|..+-.= .+.... ...++.... .+.+.|+||.+..+...+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCChHHH
Confidence 467888877666778888898888877654311 011110 011111111 467899999998875554
Q ss_pred H--HHHHHHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHH
Q 024773 117 F--LEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILA 168 (262)
Q Consensus 117 f--~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~ 168 (262)
. ...+.+.+ ++.+|+ +-.+.-...|++. |.+..+.|+..++..|.
T Consensus 83 ~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~~~~a~~la 131 (413)
T 3l9w_A 83 LQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERETFEGALKTG 131 (413)
T ss_dssp HHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETTHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECccHHHHHHHH
Confidence 3 23334443 344555 4578888899998 99876655443343333
No 187
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=65.16 E-value=45 Score=31.04 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=83.7
Q ss_pred ChHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEeC-hh
Q 024773 61 KNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aVG-~~ 137 (262)
+..++.+.|++.|+++..+ | .-...++ +.++.+.+.-+..++..-....+.|++. +.+-....-+| ..
T Consensus 171 D~~eikrlL~~~Gi~v~~~~p-----gg~t~~e----i~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~~ 241 (525)
T 3aek_B 171 DVAEVTKLLATMGIKVNVCAP-----LGASPDD----LRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGA 241 (525)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE-----TTCCHHH----HHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHHH
T ss_pred hHHHHHHHHHHCCCeEEEEeC-----CCCCHHH----HHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHHH
Confidence 3478999999999999874 2 1112232 3466778888888887667777777653 44433345678 66
Q ss_pred HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHH-HhCCCeeeEEeeec
Q 024773 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYT 211 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L-~~~G~~v~~i~vY~ 211 (262)
|.+-|++..+.. |....+.-+..-...+-..+......|+|+++..+....-.|...| .+.|++|..+..|.
T Consensus 242 T~~~Lr~ia~~~--g~~~~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~ 314 (525)
T 3aek_B 242 TRDFLAEVSKIT--GLPVVTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYN 314 (525)
T ss_dssp HHHHHHHHHHHH--CCCCCCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCc
Confidence 777777652222 6544111111111111111111223578988886555566788889 79999986655554
No 188
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=64.83 E-value=8.8 Score=31.80 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=36.0
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHHcC--CCCcEEEEeChhHHHHHHHhhhhcCCCCcee
Q 024773 102 IFDWIIITS---------PEAGSVFLEAWKEAG--TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (262)
Q Consensus 102 ~~d~IiFTS---------~~aV~~f~~~l~~~~--~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (262)
...+|+||| .|-++...+.+.+.. -.+..+++||.+..+.+++. |..+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCceE
Confidence 356999999 777776665554321 12568999999999999998 87654
No 189
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=64.82 E-value=9.3 Score=29.49 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHHHHHHcCCCCcEEEEeCh
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 136 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a-----V~~f~~~l~~~~~~~~~i~aVG~ 136 (262)
+.+.+.|++.|+++..+.+-+ ..+.+. .+..+.++|.|||-||.= ...|+..+......+.++++.|.
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~---~~~~~~---~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGA---AVDLQE---LRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSS---CCCHHH---HHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEECcC---cCCHHH---HHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 345566677787765443321 102222 233456799999999741 13555555554456778888873
No 190
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=64.75 E-value=27 Score=31.92 Aligned_cols=153 Identities=12% Similarity=0.041 Sum_probs=86.1
Q ss_pred CCeEEEe-CC---CCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024773 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (262)
Q Consensus 50 g~~VLit-R~---~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (262)
..+|-|. .. ..+..++.+.|++.|+++..+|-+. ..+..+ ..++ .++++++.+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~-ei~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVA-ELATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHH-HHGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHH-HHHhhhhCcEEEEecHH
Confidence 4456555 43 2235789999999999999876431 111111 1122 34466666777777887
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeC-----hhHHHHHHHhhhhcCCCCceeecCCCCC--HHHHHHHhhhC--CCCccEEEE
Q 024773 113 AGSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLY 183 (262)
Q Consensus 113 aV~~f~~~l~~~~~~~~~i~aVG-----~~Ta~~L~~~~~~~~~G~~~~~~p~~~t--~e~L~~~l~~~--~~~g~~vL~ 183 (262)
. ....+.|++.. +++++.++ ..|.+-|++..+.. |..+ |+... -..+++.+.+. ...|+|+.+
T Consensus 247 ~-~~~A~~Le~~~--GiP~~~~~~p~G~~~T~~~l~~la~~~--g~~~---~~~i~~er~r~~~~~~d~~~~l~Gkrv~i 318 (458)
T 3pdi_B 247 L-AGAADALAERT--GVPDRRFGMLYGLDAVDAWLMALAEIS--GNPV---PDRYKRQRAQLQDAMLDTHFMLSSARTAI 318 (458)
T ss_dssp G-HHHHHHHHHHS--CCCEEEECCSCHHHHHHHHHHHHHHHH--SSCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHH--CCCEEecCCCcCHHHHHHHHHHHHHHH--CCch---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5 45566665531 34555443 34666666552111 5432 11100 11133333321 125789888
Q ss_pred EccCCChhhHHHHHHhCCCeeeEEeeecc
Q 024773 184 PASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 184 ~~g~~~~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
..+..-.-.|...|.+.|+++..+.++..
T Consensus 319 ~~~~~~~~~l~~~L~elGm~vv~~~~~~~ 347 (458)
T 3pdi_B 319 AADPDLLLGFDALLRSMGAHTVAAVVPAR 347 (458)
T ss_dssp ECCHHHHHHHHHHHHTTTCEEEEEEESSC
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 76654445688899999999988877663
No 191
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=64.64 E-value=72 Score=27.79 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=91.3
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCc
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~~ 129 (262)
++|+++.+. .+...+.|++.|+++...+ ..+.+++ ...+.++|+++..+...+ +.+++.+ ++.
T Consensus 27 ~~vli~~~~--~~~~~~~l~~~~~~v~~~~------~~~~~~~---~~~~~~~d~li~~~~~~~~~~~l~~~-----~~L 90 (335)
T 2g76_A 27 RKVLISDSL--DPCCRKILQDGGLQVVEKQ------NLSKEEL---IAELQDCEGLIVRSATKVTADVINAA-----EKL 90 (335)
T ss_dssp CEEEECSCC--CHHHHHHHHHHTCEEEECC------SCCHHHH---HHHGGGCSEEEECSSSCBCHHHHHHC-----SSC
T ss_pred eEEEEcCCC--CHHHHHHHHhCCCEEEECC------CCCHHHH---HHHhcCceEEEEcCCCCCCHHHHhhC-----CCC
Confidence 578888654 3556777888787665432 1123333 234578999887543222 1222222 244
Q ss_pred EEEE---eCh--hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHh----h----h--------------------CCC
Q 024773 130 RIGV---VGA--GTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL----P----K--------------------NGK 176 (262)
Q Consensus 130 ~i~a---VG~--~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l----~----~--------------------~~~ 176 (262)
++++ +|- -..+++++. |+.+.-.|. ++.+.+++.. . . ...
T Consensus 91 k~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l 163 (335)
T 2g76_A 91 QVVGRAGTGVDNVDLEAATRK------GILVMNTPN-GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTEL 163 (335)
T ss_dssp CEEEESSSSCTTBCHHHHHHH------TCEEECCSS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCC
T ss_pred cEEEECCCCcchhChHHHHhC------CeEEEECCC-ccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCC
Confidence 5443 221 224677788 998866663 4444433221 0 0 123
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-------hHHHHHHcCCCCEEEEeCHHH
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-------~~~~~~~l~~~d~ivFtS~s~ 239 (262)
.|+++.+++-..-...+...|++.|++| .+|........ ...+.+.+...|+|+..-|.+
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 230 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGMKT---IGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL 230 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCCEE---EEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC
Confidence 5678888876666677889999999765 45554322100 001223345789999988765
No 192
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=64.47 E-value=2.9 Score=32.73 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=47.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeC---CCch--HHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEeC
Q 024773 62 NGKLIKALAKHRIDCLELPLIQHAQG---PDTD--RLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~---~~~~--~l~~~l~~l~~~d~IiFTS~~a-V~~f~~~l~~~~~~~~~i~aVG 135 (262)
...+.+.|...|+++...|+.+.... .+.+ -.-..+...+.+|.+++.|.-+ .....+.+.+. -+.+|..+|
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~--~G~~V~v~g 140 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQR--YNKKVTVYG 140 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHH--HCCEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHH--cCcEEEEEe
Confidence 46788999999999999887653211 1111 1111222236788888777755 33334444442 035666666
Q ss_pred h--hHHHHHHHh
Q 024773 136 A--GTASIFEEV 145 (262)
Q Consensus 136 ~--~Ta~~L~~~ 145 (262)
. .|+..|++.
T Consensus 141 ~~~~~s~~L~~~ 152 (165)
T 2qip_A 141 VPRLTSQTLIDC 152 (165)
T ss_dssp CGGGSCHHHHHH
T ss_pred CCCcChHHHHHh
Confidence 3 367777776
No 193
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=64.06 E-value=7 Score=32.90 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=37.6
Q ss_pred CCCeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 024773 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (262)
Q Consensus 49 ~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (262)
.+|+|++.+.. +....+...|++.|+++..+.++...+.+. .+.++|.||++-.
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCC
Confidence 36788888643 456788999999999988776655432221 2456899998743
No 194
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=63.83 E-value=10 Score=32.93 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=88.6
Q ss_pred eEEEeCCCCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHH
Q 024773 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEA 120 (262)
Q Consensus 52 ~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~f~~~ 120 (262)
-|++...+..+..+ .+..++.|++...+.+-+.. ..+++...+ +.....|.|+..-|-- + +...+.
T Consensus 41 avilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~ 117 (300)
T 4a26_A 41 ASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEK 117 (300)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhh
Confidence 45555544333333 34556789988765442211 234454444 3456899999998721 1 222222
Q ss_pred HHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEc-cCCChhhHHHHH
Q 024773 121 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGL 197 (262)
Q Consensus 121 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~-g~~~~~~L~~~L 197 (262)
+.. ...+=.+++.-...|-.- +....+.| -|..+.++.|..+. ..|++++++. |+.....+...|
T Consensus 118 I~p----~KDVDG~~~~N~G~l~~g------~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL 185 (300)
T 4a26_A 118 IHP----HKDADALLPVNVGLLHYK------GREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185 (300)
T ss_dssp SCG----GGCTTCCSHHHHHHHHCT------TCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred CCc----ccccccCCcceEEEeecC------CCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHH
Confidence 211 111212233333333211 11222344 47788888777653 4788988887 444567788899
Q ss_pred HhCCCeeeEEeeeccccCCCChHHHH--HHcCCCCEEEEeCHH
Q 024773 198 SNRGFEVVRLNTYTTEPVHHVDQTVL--KQALSIPVVAVASPS 238 (262)
Q Consensus 198 ~~~G~~v~~i~vY~~~~~~~~~~~~~--~~l~~~d~ivFtS~s 238 (262)
.+.|++|+-+.-+ +. .+. +.+...|+|+-+.+.
T Consensus 186 ~~~gAtVtv~~~~-T~-------~l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 186 MKENATVTIVHSG-TS-------TEDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHTTCEEEEECTT-SC-------HHHHHHHHHTCSEEEECSCC
T ss_pred HHCCCeEEEEeCC-CC-------CchhhhhhccCCEEEECCCC
Confidence 9999987543221 11 222 445688988887774
No 195
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=63.68 E-value=39 Score=24.45 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (262)
...+.+||+...... ...+.+.|++.|+.+... .+.++....+.. ..+|.|+.- -.++.+.. +.+
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~-~~l 80 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDML-KQL 80 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHH-HHH
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHH-HHH
Confidence 456789999966543 356777888888766432 233333344433 568988874 22344432 333
Q ss_pred H---HcCCCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC
Q 024773 122 K---EAGTPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (262)
Q Consensus 122 ~---~~~~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (262)
. .......+++.+ |.. ....+.+. |.. ++..+..+.+.|.+.+....
T Consensus 81 r~~~~~~~~~~pii~~s~~~~~~~~~~~~~~------Ga~-~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 81 RVMQASGMRYTPVVVLSADVTPEAIRACEQA------GAR-AFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHTTCCCCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHHC
T ss_pred HhchhccCCCCeEEEEeCCCCHHHHHHHHHc------Chh-heeeCCCCHHHHHHHHHHHH
Confidence 2 222334555554 332 33444555 765 46778889999998887653
No 196
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=63.63 E-value=14 Score=28.48 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=34.4
Q ss_pred hHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHHH-----HHHHHHHhcccCCCCCeEEEEC
Q 024773 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-----VRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 192 ~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s~-----~~~~~~~~~~~~~~~~~i~~IG 261 (262)
.+.+.|.+.|+.|+.+.+.+ . ....++...+...|.|+|-||.- ...|++.+....+.+.+++++|
T Consensus 24 ~ia~~l~~~g~~v~~~~~~~---~-~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fg 94 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDLGA---A-VDLQELRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFE 94 (159)
T ss_dssp HHHHHHHHTTCEEEEEESSS---C-CCHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHHCCCeEEEEECcC---c-CCHHHHHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEE
Confidence 34556666676544333322 1 02233444445778888888732 1345555443334567777776
No 197
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=63.23 E-value=8.6 Score=28.80 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeCHH----------HHHHHHHHHHHcCCCCcEE
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRI 131 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~IiFTS~~----------aV~~f~~~l~~~~~~~~~i 131 (262)
+.+.+.|++.|+++..+++-+.. . ..+. ++|.|+|-+|. .++.|++.+....+.+.++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~----~-------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~ 88 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADAS----A-------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKV 88 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBC----C-------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCC----H-------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEE
Confidence 34555566678776554332221 1 1345 89998887753 5667776655444456666
Q ss_pred EEeC
Q 024773 132 GVVG 135 (262)
Q Consensus 132 ~aVG 135 (262)
+++|
T Consensus 89 ~vfg 92 (148)
T 3f6r_A 89 AAFA 92 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 198
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=63.10 E-value=25 Score=27.46 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=17.4
Q ss_pred CCCEEEEeCH-------HHHHHHHHHhcc---cCCCCCeEEEE
Q 024773 228 SIPVVAVASP-------SAVRSWVNLISD---TEQWSNSVACI 260 (262)
Q Consensus 228 ~~d~ivFtS~-------s~~~~~~~~~~~---~~~~~~~i~~I 260 (262)
..|.|+|-|| ..++.|++.+.. ..+.+.+++++
T Consensus 52 ~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~ 94 (188)
T 2ark_A 52 WADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAF 94 (188)
T ss_dssp HCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEE
T ss_pred hCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEE
Confidence 5566666664 346666666543 12344555544
No 199
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=62.29 E-value=21 Score=27.37 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=5.1
Q ss_pred CCHHHHHHHhh
Q 024773 162 ATGKILASELP 172 (262)
Q Consensus 162 ~t~e~L~~~l~ 172 (262)
.+.+.+++.|.
T Consensus 12 GnT~~~A~~ia 22 (161)
T 3hly_A 12 GYSDRLSQAIG 22 (161)
T ss_dssp TTHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44445544443
No 200
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=62.10 E-value=37 Score=28.93 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=77.7
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH--HhhhhcCCCCce--eecCCC-CCHHHHHHHhhhC
Q 024773 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE--EVIQSSKCSLDV--AFSPSK-ATGKILASELPKN 174 (262)
Q Consensus 101 ~~~d~IiF-TS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~--~~~~~~~~G~~~--~~~p~~-~t~e~L~~~l~~~ 174 (262)
+..|.||- .+..........+.+. +++++..+.. ...+. +. +... .+.+.. ..+..+++.+.+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAA-AILVAPMDE------RRKWVYKVVPNDDIMAEAIGKYIAKT 157 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCC-GGGTCSCCT------TGGGEEECSCCHHHHHHHHHHHHHHT
T ss_pred cCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCC-CccccccCC------CCCcEEecCCCcHHHHHHHHHHHHhc
Confidence 46899885 3455555666666655 5677777653 22222 11 1111 122322 2345666666654
Q ss_pred CCCccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCH-HHHHHHHHH
Q 024773 175 GKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNL 246 (262)
Q Consensus 175 ~~~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~-s~~~~~~~~ 246 (262)
..+++.++..+. ..+.+.+.|++.|.++.....|..... .. ....+.+ .+.|+|++.+. ..+..+++.
T Consensus 158 --g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-d~-~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 --GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDA-SV-TGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp --TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCS-CC-HHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred --CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCC-cH-HHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 347887776543 245677889999988765555554322 22 2222333 37898887775 666777777
Q ss_pred hcccC
Q 024773 247 ISDTE 251 (262)
Q Consensus 247 ~~~~~ 251 (262)
+.+.+
T Consensus 234 ~~~~g 238 (386)
T 3sg0_A 234 LRERG 238 (386)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 76654
No 201
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=62.08 E-value=63 Score=31.52 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-----~aV~~f~~ 119 (262)
..+|++...... ..-....|+..|++|+..+.... .+++.+...+ .+.|.|..+|- ..+..+.+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA~e-~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQT-----PEETARQAVE-ADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBC-----HHHHHHHHHH-TTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCC-----HHHHHHHHHH-cCCCEEEEeeecHhHHHHHHHHHH
Confidence 457777665432 23456688899999998765321 2333333323 57889888773 34566677
Q ss_pred HHHHcCCCCcEEEEeC---hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
.+++.+.++++|++=| +...+.+++. |+...+.|. .+...++..+.
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~g-t~~~e~a~~l~ 718 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTPG-TVIPESAISLV 718 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECTT-CCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcCC-ccHHHHHHHHH
Confidence 7777787677777665 3335778999 998766554 35555555544
No 202
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Probab=62.05 E-value=54 Score=31.04 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=81.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCH-HHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSP-EAGSVFLEAWK 122 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~-~aV~~f~~~l~ 122 (262)
..+.||.+|||....+ ...+++.|.+.|++|+..-. ...+++.+.+...+ .+.+.+ .+. ..++.+++.+.
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~------~~~~~~~~~i~~~g-~~~~~~~~Dv~~~~~~~~~~~~ 390 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF------KDATKTVDEIKAAG-GEAWPDQHDVAKDSEAIIKNVI 390 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECS------SCCHHHHHHHHHTT-CEEEEECCCHHHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeC------ccHHHHHHHHHhcC-CeEEEEEcChHHHHHHHHHHHH
Confidence 4688999999988765 46799999999999875421 12233334443332 233333 344 55555555443
Q ss_pred H-cCCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC----
Q 024773 123 E-AGTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---- 189 (262)
Q Consensus 123 ~-~~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~---- 189 (262)
+ .+.-++-|..-| +.|.+.+++. +.+.+...-.....++..|.+. .+.+|+.+.+..+
T Consensus 391 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~-------~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~ag~~~~ 461 (604)
T 2et6_A 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSV-------QQVHLIGTFNLSRLAWPYFVEK--QFGRIINITSTSGIYGN 461 (604)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHSCC
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECChhhccCC
Confidence 3 332122222222 2345555555 2322222212334444555432 3468888876321
Q ss_pred ----------------hhhHHHHHHhCCCeeeEEeee
Q 024773 190 ----------------SNEIEEGLSNRGFEVVRLNTY 210 (262)
Q Consensus 190 ----------------~~~L~~~L~~~G~~v~~i~vY 210 (262)
...|..+|...|++|..+.--
T Consensus 462 ~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG 498 (604)
T 2et6_A 462 FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH 498 (604)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCC
Confidence 345777888889998877664
No 203
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=61.89 E-value=33 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.||+||||..... ...+++.|.++|++|+..
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 4578999999988754 467999999999987643
No 204
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=61.83 E-value=40 Score=23.89 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=64.7
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~l~~ 123 (262)
.+.+||+...+.. ...+.+.|++.|+.+... .+.++....+.. ..+|.|++--. ++.+ ++..+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 75 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSA--------GDGEEGERLFGL-HAPDVIITDIRMPKLGGLE-MLDRIKA 75 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEE--------SSHHHHHHHHHH-HCCSEEEECSSCSSSCHHH-HHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEE--------CCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 3568999876543 456788888877765433 233333344433 46888877532 3443 3444554
Q ss_pred cCCCCcEEEEeChh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AGTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~~~~~~i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. .+.+++++... ....+.+. |.. ++.++..+.+.|.+.+...
T Consensus 76 ~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 122 (137)
T 3hdg_A 76 GG-AKPYVIVISAFSEMKYFIKAIEL------GVH-LFLPKPIEPGRLMETLEDF 122 (137)
T ss_dssp TT-CCCEEEECCCCCCHHHHHHHHHH------CCS-EECCSSCCHHHHHHHHHHH
T ss_pred cC-CCCcEEEEecCcChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHHH
Confidence 43 46677776543 33344455 775 4777888999998877654
No 205
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=61.81 E-value=40 Score=23.88 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=61.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT-----S~~aV~~f~~ 119 (262)
....+.+||+...+.. ...+...|+..|+++... ..+.++....+.. ..+|.|++- ..++.+ ++.
T Consensus 5 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-------~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~-~~~ 75 (140)
T 3cg0_A 5 ASDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGV-------FDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVE-TAA 75 (140)
T ss_dssp ---CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEE-------ESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHH-HHH
T ss_pred cCCCCceEEEEECCHHHHHHHHHHHHHCCCeeEEE-------ECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHH-HHH
Confidence 4455789999876543 456788888888876421 1233333334433 358998875 234444 444
Q ss_pred HHHHcCCCCcEEEEeC-hhHHH---HHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 120 AWKEAGTPNVRIGVVG-AGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG-~~Ta~---~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+.+. .+.+++++. ....+ .+.+. |.. ++..+..+.+.|...+..
T Consensus 76 ~l~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~~ 124 (140)
T 3cg0_A 76 RLAAG--CNLPIIFITSSQDVETFQRAKRV------NPF-GYLAKPVAADTLHRSIEM 124 (140)
T ss_dssp HHHHH--SCCCEEEEECCCCHHHHHHHHTT------CCS-EEEEESCCHHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEecCCCHHHHHHHHhc------CCC-EEEeCCCCHHHHHHHHHH
Confidence 45444 456666543 33332 33334 665 355667788888877654
No 206
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.56 E-value=13 Score=28.65 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH---H--HHHHHHHHHcCCCCcEEEEeC
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA---G--SVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a---V--~~f~~~l~~~~~~~~~i~aVG 135 (262)
+.+.+.|++.|++|..+.+-+ .+.+. .+..+.+||.|||-||.= + ..|++.+......+.+++++|
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~---~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fg 89 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQE---LIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFD 89 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHH---HHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHH---HHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEE
Confidence 345666777788765443211 12222 223346799999998731 1 456666655445677888887
No 207
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=61.56 E-value=35 Score=27.82 Aligned_cols=75 Identities=8% Similarity=-0.069 Sum_probs=48.7
Q ss_pred CCCCCCeEEEeCCC--CC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRER--GK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~--~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.+|+||||... .. ...+++.|.+.|++|...- +.. ...+.+++.....+...++. +|+..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTY--VGD--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEe--cch--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 56789999999875 43 5689999999999876432 111 11223333333344444443 4889999999887
Q ss_pred HHHc
Q 024773 121 WKEA 124 (262)
Q Consensus 121 l~~~ 124 (262)
+.+.
T Consensus 86 ~~~~ 89 (271)
T 3ek2_A 86 LKTH 89 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 208
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=61.39 E-value=26 Score=25.17 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l 121 (262)
+.+++||+...... ...+...|++.|+++... .+..+....+..-..+|.|+.-- .++.+ ++..+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l 73 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ-TALAI 73 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHH-HHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHH-HHHHH
Confidence 35789999976543 456888899999775532 23333334443325789888742 34443 34444
Q ss_pred HHcCCCCcEEEEeChhHH----HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 122 KEAGTPNVRIGVVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta----~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+. .+.+++.+..... ..+.+. |.. ++..+..+.+.|...+..
T Consensus 74 ~~~--~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 120 (140)
T 3h5i_A 74 QQI--SELPVVFLTAHTEPAVVEKIRSV------TAY-GYVMKSATEQVLITIVEM 120 (140)
T ss_dssp HHH--CCCCEEEEESSSSCCCCGGGGGS------CEE-EEEETTCCHHHHHHHHHH
T ss_pred HhC--CCCCEEEEECCCCHHHHHHHHhC------CCc-EEEeCCCCHHHHHHHHHH
Confidence 443 3556665543322 223334 654 466777888888876653
No 209
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=61.33 E-value=73 Score=27.85 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=29.1
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (262)
..+.|++|+|.....-...+.+.+++.|++++.+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d 44 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLD 44 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 34679999999877667889999999999998764
No 210
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=61.27 E-value=42 Score=24.03 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~l~~ 123 (262)
.+++||+...+.. ...+...|+..|+.... ....+.++....+ .-..+|.|+.--. ++.+ ++..+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v------~~~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQL------EFVDNGAKALYQV-QQAKYDLIILDIGLPIANGFE-VMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEE------EEESSHHHHHHHH-TTCCCSEEEECTTCGGGCHHH-HHHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeE------EEECCHHHHHHHh-hcCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 4678999976543 45688889999987331 1112333334444 3356888777432 2333 4444544
Q ss_pred cC-CCCcEEEEeCh-hHH---HHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhh
Q 024773 124 AG-TPNVRIGVVGA-GTA---SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (262)
Q Consensus 124 ~~-~~~~~i~aVG~-~Ta---~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~ 173 (262)
.. ..+++++++.. ... ..+.+. |.. ++..+.. +.+.|.+.+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~~l~~~i~~ 124 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAA------GAS-SVVDKSSNNVTDFYGRIYA 124 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHT------TCS-EEEECCTTSHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCcHHHHHHHHHH
Confidence 22 24566665543 223 334445 765 4667777 88888877654
No 211
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=61.26 E-value=14 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=31.8
Q ss_pred EEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHH
Q 024773 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIE 194 (262)
Q Consensus 131 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~ 194 (262)
++.-...|++.|++.+ ++.+... ..+.-++++.|......+.++-++.-...-..+.
T Consensus 66 VIISRGgta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~ 122 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALV 122 (225)
T ss_dssp EEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHH
T ss_pred EEEeCChHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHH
Confidence 3333335777777763 4444322 3566777777766554556666666655444433
No 212
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=60.91 E-value=16 Score=29.69 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=35.9
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (262)
.+..+++|+|......-..+.+.|++.|+++..++. .+ .+..+|.||++-..
T Consensus 19 ~~~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~--------~~-------~l~~~Dglil~GG~ 70 (219)
T 1q7r_A 19 YFQSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK--------SE-------QLEGLDGLVLPGGE 70 (219)
T ss_dssp CCCCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS--------GG-------GGTTCSEEEECCCC
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC--------HH-------HHhhCCEEEECCCC
Confidence 335578899996543335567899999998877653 11 24579999998653
No 213
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=60.76 E-value=10 Score=29.37 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=21.6
Q ss_pred HHHHHcCCCCEEEEeCH-------HHHHHHHHHhc
Q 024773 221 TVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (262)
Q Consensus 221 ~~~~~l~~~d~ivFtS~-------s~~~~~~~~~~ 248 (262)
++.+.+...|.|+|.|| ..++.|++.+.
T Consensus 64 ~~~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 64 SIIERILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHHHHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 34455679999999994 78899998763
No 214
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=60.52 E-value=23 Score=28.94 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHHc-C
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKEA-G 125 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~~~-~ 125 (262)
||+||||..... ...+++.|.+.|++|...- .+.+.+++....+....++. +|+..+++.+++.+.+. +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 74 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID-------IDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHhcccCCeEEeeCCCHHHHHHHHHHHHHHcC
Confidence 689999988764 4679999999999877531 12233333333344433322 47888898888766543 3
Q ss_pred CCCcEEEEeC
Q 024773 126 TPNVRIGVVG 135 (262)
Q Consensus 126 ~~~~~i~aVG 135 (262)
.-+.-|.+.|
T Consensus 75 ~id~lv~nAg 84 (247)
T 3dii_A 75 RIDVLVNNAC 84 (247)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 2233444443
No 215
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=60.43 E-value=6.6 Score=28.80 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------H--HHHHHHHHHHcCCCCcEEEE
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGV 133 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------a--V~~f~~~l~~~~~~~~~i~a 133 (262)
+.+.+.+++.|+++..+.+ .+.+ . ..+.++|.|+|-||. . ++.|++.+.. .+.+.++++
T Consensus 18 ~~i~~~l~~~g~~v~~~~~------~~~~-~----~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~ 85 (137)
T 2fz5_A 18 NEIEAAVKAAGADVESVRF------EDTN-V----DDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGL 85 (137)
T ss_dssp HHHHHHHHHTTCCEEEEET------TSCC-H----HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEE
T ss_pred HHHHHHHHhCCCeEEEEEc------ccCC-H----HHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEE
Confidence 3445566677888765432 2211 1 124579999998876 2 8888887754 345677777
Q ss_pred eC
Q 024773 134 VG 135 (262)
Q Consensus 134 VG 135 (262)
+|
T Consensus 86 ~~ 87 (137)
T 2fz5_A 86 FG 87 (137)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 216
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=60.41 E-value=41 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.|++||||..... ...+++.|.+.|++|...
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3577999999988654 467889999999987643
No 217
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=59.30 E-value=19 Score=31.01 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEee--eCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHA--QGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~---~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
..+.||++|||..... ...+++.|.+.|++|+..-.-... ...+.+ .+...+.........=+++...++.+++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK 84 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHH
Confidence 4578999999988754 467899999999988754211000 001112 2222333333333445688888888777
Q ss_pred HHHH
Q 024773 120 AWKE 123 (262)
Q Consensus 120 ~l~~ 123 (262)
.+.+
T Consensus 85 ~~~~ 88 (319)
T 1gz6_A 85 TALD 88 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 218
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=59.08 E-value=79 Score=27.69 Aligned_cols=134 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccE
Q 024773 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (262)
Q Consensus 101 ~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~ 180 (262)
..+|.||++|..--+.+.+...+. ++++++.++.... .- .+.. +....+.+.=|+-.+.....+.++
T Consensus 85 ~g~d~Ii~~g~~~~~~~~~vA~~~--Pdv~fv~id~~~~----~~------Nv~s-v~~~~~eg~ylaG~~A~~~tk~~k 151 (356)
T 3s99_A 85 AGNKLIFTTSFGYMDPTVKVAKKF--PDVKFEHATGYKT----AD------NMSA-YNARFYEGRYVQGVIAAKMSKKGI 151 (356)
T ss_dssp TTCSEEEECSGGGHHHHHHHHTTC--TTSEEEEESCCCC----BT------TEEE-EEECHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCEEEECCHHHHHHHHHHHHHC--CCCEEEEEecccc----CC------cEEE-EEechhHHHHHHHHHHHHhcCCCE
Confidence 579999999877666655544433 4678887753211 11 2322 222222232333322222234579
Q ss_pred EEEEccCCChh------hHHHHHHhCCCeeeEEeeeccccCCCCh-HHHHHH-c-CCCCEEEEeCHHHHHHHHHHhcc
Q 024773 181 VLYPASAKASN------EIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQ-A-LSIPVVAVASPSAVRSWVNLISD 249 (262)
Q Consensus 181 vL~~~g~~~~~------~L~~~L~~~G~~v~~i~vY~~~~~~~~~-~~~~~~-l-~~~d~ivFtS~s~~~~~~~~~~~ 249 (262)
|-|+.|..... -+.+.++..+-.++....|......... .++.+. + .++|+|....-.. ..++.+++
T Consensus 152 IGfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~--Gv~~aa~e 227 (356)
T 3s99_A 152 AGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST--AAIQVAHD 227 (356)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS--HHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHH
Confidence 99999875432 3456777777777767777654322111 122222 2 4788665544332 34455444
No 219
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=59.02 E-value=89 Score=27.01 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=88.8
Q ss_pred CeEEEeCCCCChHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024773 51 PKVVVTRERGKNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (262)
++|+++..........+.|.+ .|+++...+- .. +.++ ....+.++|+++..+...+ +.+++.+.+. +
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----YL-NTKE---TAEMAAGFDAVILRGNCFANKQNLDIYKKL---G 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----CS-CSHH---HHHTTTTCSEEEECTTCCBCHHHHHHHHHH---T
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----CC-CHHH---HHHHhcCCeEEEEeCCCCCCHHHHhhCccc---C
Confidence 468887544444455556643 5655543321 11 1122 2334688999887643222 2344444432 2
Q ss_pred cEEEE---eC--hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHH----Hhh---h---------------C-------
Q 024773 129 VRIGV---VG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS----ELP---K---------------N------- 174 (262)
Q Consensus 129 ~~i~a---VG--~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~----~l~---~---------------~------- 174 (262)
.++++ +| .--.+++++. |+.+.-.|. ++.+.+++ .+. . +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 34443 22 1135677888 998866664 34333322 111 0 0
Q ss_pred CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-----hHHHHHHcCCCCEEEEeCHHH
Q 024773 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 175 ~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-----~~~~~~~l~~~d~ivFtS~s~ 239 (262)
...|+++.+++-..-...+...|+..|++| .+|.+...... ...+.+.+...|+|+..-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t 209 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATV---IGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYI 209 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEE---EEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCc
Confidence 124677888876666678889999999875 45554332210 011223345789999876653
No 220
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=58.82 E-value=8.6 Score=32.03 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=41.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE--EEeCHHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWK 122 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~I--iFTS~~aV~~f~~~l~ 122 (262)
..+.||+||||..... ...+++.|.+.|++|+..-. +.+.+.+.+...+ ..++ =+++..+++.+++.+.
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-------~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~ 94 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR-------TEHASVTELRQAG-AVALYGDFSCETGIMAFIDLLK 94 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES-------SCCHHHHHHHHHT-CEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC-------ChHHHHHHHHhcC-CeEEECCCCCHHHHHHHHHHHH
Confidence 5688999999988764 46789999999999875421 1111222232222 2222 1478888888888765
Q ss_pred Hc
Q 024773 123 EA 124 (262)
Q Consensus 123 ~~ 124 (262)
+.
T Consensus 95 ~~ 96 (260)
T 3gem_A 95 TQ 96 (260)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 221
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=58.73 E-value=18 Score=30.27 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=52.0
Q ss_pred CCCCCeEEEeCCCC----ChHH----HHHHHHhCCCcEEEeceEEeeeCCC-----chHHHHHHhcCCCccEEEEeCH--
Q 024773 47 SNSNPKVVVTRERG----KNGK----LIKALAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSP-- 111 (262)
Q Consensus 47 ~l~g~~VLitR~~~----~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~-----~~~l~~~l~~l~~~d~IiFTS~-- 111 (262)
+...++|++.-... .... +.+.+++.|+++..+-+.+. +..+ .+.+......+..+|.|||.||
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y 109 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPVSHPKVQELRELSIWSEGQVWVSPER 109 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC
Confidence 33456777664432 2233 44556667998888776553 2111 1234555556678999999995
Q ss_pred -----HHHHHHHHHHHHc-----CCCCcEEEEeC
Q 024773 112 -----EAGSVFLEAWKEA-----GTPNVRIGVVG 135 (262)
Q Consensus 112 -----~aV~~f~~~l~~~-----~~~~~~i~aVG 135 (262)
...++|++.+... .+.++++++++
T Consensus 110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ 143 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQ 143 (247)
T ss_dssp SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEE
T ss_pred CCCccHHHHHHHHHhhhccCcccccCCCEEEEEE
Confidence 5788888876432 13455555443
No 222
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.64 E-value=42 Score=32.47 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=68.9
Q ss_pred CCeEEEeCCCCChHHHH---------HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH--------H
Q 024773 50 NPKVVVTRERGKNGKLI---------KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------E 112 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~---------~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~--------~ 112 (262)
..+|++.....+...+- ..|+..|++|+.+..-. | .+++.+...+ .+.|.|.+++- .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdV--P---pEeIVeAA~E-edADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSV--P---VEKLVDAAIE-LKADAILASTIISHDDIHYK 675 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSB--C---HHHHHHHHHH-TTCSEEEEECCCCGGGHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCC--C---HHHHHHHHHH-cCCCEEEEeccccCchhhHH
Confidence 45677776554333333 35899999999887642 2 2333333323 47899988853 3
Q ss_pred HHHHHHHHHHHcCCC-CcEEEEeChhHH-HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 113 AGSVFLEAWKEAGTP-NVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 113 aV~~f~~~l~~~~~~-~~~i~aVG~~Ta-~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.++.+.+.+++.+.+ +++|++=|.... +..++. |....+ +....+..+++.|.+
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI------GADa~f-~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ------GVDAGF-GRGSKGIHVATFLVK 731 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc------CCcEEE-CCcchHHHHHHHHHH
Confidence 446677778888775 478888886544 444555 987644 444566666666554
No 223
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=58.56 E-value=38 Score=27.31 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEE
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (262)
..+.+++||||..... ...+++.|.+.|++|+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~ 43 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVII 43 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 4577999999988765 46789999999998774
No 224
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=58.50 E-value=15 Score=31.51 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=48.1
Q ss_pred cEEEEEccCCC--------hhhHHHHHHhCCCeeeEEeeeccccCCCC-----------------------------hHH
Q 024773 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------------------------DQT 221 (262)
Q Consensus 179 ~~vL~~~g~~~--------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-----------------------------~~~ 221 (262)
.|+|++-|--. .+...+.|++.|.+|+.+.+|+....+.. ..+
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 102 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSAD 102 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHH
Confidence 57887776422 34567789999999999999986543211 011
Q ss_pred ---HHHHcCCCCEEEEeC-------HHHHHHHHHHhc
Q 024773 222 ---VLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (262)
Q Consensus 222 ---~~~~l~~~d~ivFtS-------~s~~~~~~~~~~ 248 (262)
..+.+...|.|||.+ |...+.|++.+=
T Consensus 103 v~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~ 139 (280)
T 4gi5_A 103 IVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVY 139 (280)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhc
Confidence 122345789999876 689999999864
No 225
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=58.50 E-value=35 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
+.||+||||..... ...+++.|.+.|++|...
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 67899999988764 467899999999987653
No 226
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=58.26 E-value=7.7 Score=34.31 Aligned_cols=169 Identities=10% Similarity=-0.024 Sum_probs=87.9
Q ss_pred CeEEEeCCCCChHHH-HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HH-HHHHHHHcCCC
Q 024773 51 PKVVVTRERGKNGKL-IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SV-FLEAWKEAGTP 127 (262)
Q Consensus 51 ~~VLitR~~~~~~~l-~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~-f~~~l~~~~~~ 127 (262)
+||+++.......++ .+.+++.|+++...+-. .. ++ .+..+.++|+|+..+..-+ +. +++.+...
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~--~~---~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~--- 69 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA----LT--SA---TVDLAEGCSSVSLKPLGPVDEEVVYQKLSEY--- 69 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC----CS--TT---GGGGGTTCSEEEECCSSCBCCHHHHHHHHHT---
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC----CC--HH---HHHHhcCCcEEEEcCCCCcCHHHHHHhcccc---
Confidence 689998765555544 44556779888766531 11 11 2335688999988753333 12 55555432
Q ss_pred CcEEEE-eChhH----HHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hh---------------h----C-----
Q 024773 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LP---------------K----N----- 174 (262)
Q Consensus 128 ~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~---------------~----~----- 174 (262)
++++++ .|-.+ .+++++. |+.+.-.|. ++.+.+++. +. + +
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~ 142 (343)
T 2yq5_A 70 GVKCIGLRIVGFNTINFDWTKKY------NLLVTNVPV-YSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLI 142 (343)
T ss_dssp TCCEEEESSSCCTTBCSSTTCC--------CEEECCSC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGC
T ss_pred CceEEEECceeecccchhHHHhC------CEEEEECCC-CCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCC
Confidence 122221 12111 2334455 666654442 333333321 10 0 1
Q ss_pred --CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC--hHHHHHHcCCCCEEEEeCHH
Q 024773 175 --GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 175 --~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~--~~~~~~~l~~~d~ivFtS~s 238 (262)
...|+++.+++-..-...+...|+..|++|.-+..|........ ...+.+.+...|+|+..-|.
T Consensus 143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Pl 210 (343)
T 2yq5_A 143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPL 210 (343)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCC
Confidence 12467888887666677889999999986644433322111100 01223334578999998885
No 227
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=58.18 E-value=3.3 Score=33.50 Aligned_cols=60 Identities=10% Similarity=-0.025 Sum_probs=42.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 024773 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~ 122 (262)
+..+.+.+++.|.+|..+-+++..+.. ..++.+....+..+|.|||.|| ..++.|++.+.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~-~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQG-KIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTC-CCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCC-chhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 455677778889999988888765432 1234445556678999999986 56677777654
No 228
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=58.17 E-value=16 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=19.5
Q ss_pred CCCCEEEEeCHH---------HHHHHHHHhcccCCCCCeEEEEC
Q 024773 227 LSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 227 ~~~d~ivFtS~s---------~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
...|.|+|-||. .++.|++.+.. .+.+.+++.+|
T Consensus 45 ~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~~ 87 (137)
T 2fz5_A 45 ASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLFG 87 (137)
T ss_dssp HTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEEE
T ss_pred hcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEEE
Confidence 356777777665 16677766543 23455555543
No 229
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=58.13 E-value=50 Score=26.94 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=51.0
Q ss_pred CCCCCCeEEEeCCCC---ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC--ccEEE--EeCHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (262)
Q Consensus 46 ~~l~g~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~--~d~Ii--FTS~~aV~~f~ 118 (262)
..+.|+++|||.... =...+++.|.+.|++|+.. .+.. ...+.+.+.....+. ..++. +|+..+++.++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFT--YAGE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe--cCch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 457899999998763 2567999999999987643 1111 112233333333332 22322 47899999988
Q ss_pred HHHHHc-CCCCcEEEEeC
Q 024773 119 EAWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 119 ~~l~~~-~~~~~~i~aVG 135 (262)
+.+.+. +.-+.-|.+.|
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCeeEEEEccc
Confidence 877553 22234444444
No 230
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=57.95 E-value=12 Score=31.40 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCCCCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCc
Q 024773 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103 (262)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~ 103 (262)
.++++.++-|++..- ..+.||++|||..... ...+++.|.+.|++|+..-. ......+++...+...+ .
T Consensus 10 ~~~~~~~n~~~~~mm------~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~---~~~~~~~~~~~~~~~~~-~ 79 (280)
T 4da9_A 10 GVDLGTENLYFQSMM------TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI---GDAEGVAPVIAELSGLG-A 79 (280)
T ss_dssp -------------CC------SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---CCHHHHHHHHHHHHHTT-C
T ss_pred cccccccchhhhhhh------hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHHHhcC-C
Confidence 356677777887733 4678999999988764 46799999999998764321 00001122222232221 2
Q ss_pred cEEE----EeCHHHHHHHHHHHHHc-CCCCcEEEEeCh----------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHH
Q 024773 104 DWII----ITSPEAGSVFLEAWKEA-GTPNVRIGVVGA----------GTASIFEEVIQSSKCSLDVAFSPSKATGKILA 168 (262)
Q Consensus 104 d~Ii----FTS~~aV~~f~~~l~~~-~~~~~~i~aVG~----------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~ 168 (262)
+..+ +|+..+++.+++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.-.+.++
T Consensus 80 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~ 152 (280)
T 4da9_A 80 RVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTI-------VGVNLRGTVFFTQAVL 152 (280)
T ss_dssp CEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHH-------TTTHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHH-------HHHhhHHHHHHHHHHH
Confidence 2222 46888888888776543 322455555553 144555554 2222222112233444
Q ss_pred HHhhhCC-CCccEEEEEccCCC--------------------hhhHHHHHHhCCCeeeEEe
Q 024773 169 SELPKNG-KKKCTVLYPASAKA--------------------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 169 ~~l~~~~-~~g~~vL~~~g~~~--------------------~~~L~~~L~~~G~~v~~i~ 208 (262)
..+.+.. ..+.+|+++.+..+ ...|..+|...|+.|..+.
T Consensus 153 ~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 213 (280)
T 4da9_A 153 KAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVR 213 (280)
T ss_dssp HHHHHHCCCCCEEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHHhCCCCCCEEEEEcchhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEe
Confidence 4443322 12467888777432 1235556666787776554
No 231
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.44 E-value=25 Score=28.70 Aligned_cols=91 Identities=9% Similarity=0.084 Sum_probs=55.9
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE--eCHHH-----HHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GSV 116 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF--TS~~a-----V~~ 116 (262)
.+.+|++..+..+ ..-....|+.+|++|+.+-.- .| .+++.+...+ .+.|.|.+ ++-.+ ++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~--vp---~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD--VL---NENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS--CC---HHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC--CC---HHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHH
Confidence 3567777765432 245667889999999987541 12 2344344433 46788777 54332 455
Q ss_pred HHHHHHHcCC-CCcEEEEeChhHHHHHHHh
Q 024773 117 FLEAWKEAGT-PNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 117 f~~~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (262)
+.+.+.+.+. ++++|++-|....+.+.+.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESSSCCHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHH
Confidence 6666777665 4789999888555555444
No 232
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=56.86 E-value=19 Score=29.63 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=55.3
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
.++|.+..+... ..-+.+.++++|..+....++......+ .+.+.+.+..-...|+|+.++-......++.
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 210 (292)
T 3k4h_A 131 HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSA 210 (292)
T ss_dssp CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHH
Confidence 346766654322 1346677888887664333322211111 1234555544457899999998888888888
Q ss_pred HHHcCC---CCcEEEEeChhH
Q 024773 121 WKEAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 121 l~~~~~---~~~~i~aVG~~T 138 (262)
+.+.+. +++.|++.+...
T Consensus 211 l~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 211 LSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHHTTCCTTTTCEEEEESCCH
T ss_pred HHHhCCCCCCeEEEEEecCcc
Confidence 888876 478888888654
No 233
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=56.51 E-value=62 Score=27.75 Aligned_cols=145 Identities=12% Similarity=-0.060 Sum_probs=79.2
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH-HhhhhcCCCCce--eecCCC-CCHHHHHHHhhhCC
Q 024773 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-EVIQSSKCSLDV--AFSPSK-ATGKILASELPKNG 175 (262)
Q Consensus 101 ~~~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~-~~~~~~~~G~~~--~~~p~~-~t~e~L~~~l~~~~ 175 (262)
.+.++||-. +..........+.+. +++++..+..+. .+. +. +..- .+.|.. ..+..+++.+.+.
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~-~l~~~~------~~~~~f~~~~~~~~~~~~~~~~l~~~- 140 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTD-ALTWEK------GNRYTYRLRPSTYMQAAMLAAEAAKL- 140 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCG-GGTTTT------CCTTEEECSCCHHHHHHHHHHHHTTS-
T ss_pred cCCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCch-hhhhcc------CCCCEEEeCCChHHHHHHHHHHHHHc-
Confidence 368888864 444455556666555 456776664322 221 11 2211 122322 2345566666553
Q ss_pred CCccEEEEEccCC-----ChhhHHHHHHhC--CCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEe-CHHHHHHHHH
Q 024773 176 KKKCTVLYPASAK-----ASNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSWVN 245 (262)
Q Consensus 176 ~~g~~vL~~~g~~-----~~~~L~~~L~~~--G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFt-S~s~~~~~~~ 245 (262)
..+++.++..+. ..+.+.+.|++. |+.+.....|.... .........+ .+.|+|++. ++..+..|+.
T Consensus 141 -g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~--~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~ 217 (387)
T 3i45_A 141 -PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYK--LDAGPTVQALQQAEPEGLFNVLFGADLPKFVR 217 (387)
T ss_dssp -SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CCHHHHHHHHHHTCCSEEEECCCTTHHHHHHH
T ss_pred -CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCC--cCHHHHHHHHHhCCCCEEEEcCccHHHHHHHH
Confidence 347888887654 245677788887 77765555554322 1222333333 378888765 6667777777
Q ss_pred HhcccCC-CCCeEEE
Q 024773 246 LISDTEQ-WSNSVAC 259 (262)
Q Consensus 246 ~~~~~~~-~~~~i~~ 259 (262)
.+.+.+. .++.++.
T Consensus 218 ~~~~~g~~~~~~i~~ 232 (387)
T 3i45_A 218 EGRVRGLFAGRQVVS 232 (387)
T ss_dssp HHHHHTSSTTCEEEE
T ss_pred HHHHcCCCCCCeEEe
Confidence 7765543 3455554
No 234
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=56.46 E-value=52 Score=23.55 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=62.7
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 024773 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (262)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~ 122 (262)
..+++||+.-... ....+...|+..|++|... .+..+....+.. ..+|.|++-- .++.+ ++..+.
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~ 75 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVK-THPHLIITEANMPKISGMD-LFNSLK 75 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHH-HHHHHH
Confidence 3467899887664 3567888898888755422 233333344433 3689888752 23443 444455
Q ss_pred Hc-CCCCcEEEEeCh-h---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 123 EA-GTPNVRIGVVGA-G---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 123 ~~-~~~~~~i~aVG~-~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+. ...+++|+++.. . ....+.+. |.. ++..+..+.+.|...+..
T Consensus 76 ~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~~ 124 (147)
T 2zay_A 76 KNPQTASIPVIALSGRATAKEEAQLLDM------GFI-DFIAKPVNAIRLSARIKR 124 (147)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHHHH
T ss_pred cCcccCCCCEEEEeCCCCHHHHHHHHhC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 42 234566665533 2 23334455 775 466777888888877654
No 235
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=55.93 E-value=35 Score=25.25 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=9.3
Q ss_pred HHHHHHHHhcccCCCCCeEEEE
Q 024773 239 AVRSWVNLISDTEQWSNSVACI 260 (262)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~I 260 (262)
.++.|++.+....+.+.+++.+
T Consensus 70 ~~~~fl~~l~~~~l~~k~~~vf 91 (148)
T 3f6r_A 70 DFLSLFEEFDRIGLAGRKVAAF 91 (148)
T ss_dssp HHHHHHTTGGGTCCTTCEEEEE
T ss_pred HHHHHHHHhhccCCCCCEEEEE
Confidence 3444544443322334444444
No 236
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=55.65 E-value=14 Score=30.90 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=50.2
Q ss_pred hCCCCCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC
Q 024773 24 LNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI 102 (262)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~ 102 (262)
+..|.+.+..||+... ....+.||++|||..... ...+++.|.+.|++|+..- + . ...++....+... .
T Consensus 9 ~~~~~~~~~~~~~~m~----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r--~-~~~~~~~~~~~~~-~ 78 (273)
T 3uf0_A 9 SGVDLGTENLYFQSMT----GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG--R--T-DGVKEVADEIADG-G 78 (273)
T ss_dssp --------------------CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S--S-THHHHHHHHHHTT-T
T ss_pred ccccccccccchhhcc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc--C--H-HHHHHHHHHHHhc-C
Confidence 3456666777888743 234688999999988764 4679999999999886432 1 1 1122222333222 1
Q ss_pred ccEEE----EeCHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 103 FDWII----ITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 103 ~d~Ii----FTS~~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
.+..+ +++..+++.+.+.+.+.+.-+.-|.+.|
T Consensus 79 ~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 79 GSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAG 115 (273)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 22222 3678888888776665543233344433
No 237
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=55.63 E-value=52 Score=23.31 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (262)
.++||+...+.. ...+...|++.|+++... .+.++....+.. ..+|.|++-- .++.+ ++..+.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~~ 75 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVS-LIRALRRD 75 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHH-HHHHHHTS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 578999976643 456788899999875432 233333344433 5689888742 23443 34445442
Q ss_pred -CCCCcEEEEeChhHHHH-HH-HhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 125 -GTPNVRIGVVGAGTASI-FE-EVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~-L~-~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
...+++++.+....... .. +.+ ..|.. ++..+..+.+.|...+...
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~---~~g~~-~~l~kP~~~~~l~~~i~~~ 124 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNSQ---PLAVS-TWLEKPIDENLLILSLHRA 124 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCCT---TTCCC-EEECSSCCHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChHHHHHHhh---hcCCC-EEEeCCCCHHHHHHHHHHH
Confidence 12467877776554332 22 221 11554 4667778889988777543
No 238
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=55.20 E-value=71 Score=27.85 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=47.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEe-CHHH
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IiFT-S~~a 113 (262)
+.+++|||+........+.+.+++.|++++.+-... ..+..+.+.+.+.. .....|+|+.+ +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 457899999887667789999999999988763211 11122334444444 23468888863 4445
Q ss_pred HHHHHHHHHHcC
Q 024773 114 GSVFLEAWKEAG 125 (262)
Q Consensus 114 V~~f~~~l~~~~ 125 (262)
+..+...++..+
T Consensus 84 ~~~~a~~~~~~g 95 (403)
T 4dim_A 84 IVSLARICDKEN 95 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 555555555544
No 239
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=55.05 E-value=18 Score=31.01 Aligned_cols=86 Identities=8% Similarity=-0.002 Sum_probs=52.1
Q ss_pred CCCeEEEeCCCC----Ch----HHHHHHHHhCCCcEEEeceEEeeeCCC------chHHHHHHhcCCCccEEEEeCH---
Q 024773 49 SNPKVVVTRERG----KN----GKLIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSP--- 111 (262)
Q Consensus 49 ~g~~VLitR~~~----~~----~~l~~~L~~~G~~v~~~P~~~~~~~~~------~~~l~~~l~~l~~~d~IiFTS~--- 111 (262)
..++|++.-... .. +.+.+.+++.|+++..+-+.+. +..+ .+.+......+...|.|||.||
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dl-pl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL-PLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTC-CCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcC-CCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc
Confidence 356777664432 22 3345556677999888776554 2211 1234555556678999999995
Q ss_pred ----HHHHHHHHHHHHc-----CCCCcEEEEeC
Q 024773 112 ----EAGSVFLEAWKEA-----GTPNVRIGVVG 135 (262)
Q Consensus 112 ----~aV~~f~~~l~~~-----~~~~~~i~aVG 135 (262)
...++|++.+... .+.++++++++
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ 168 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQ 168 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEE
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 6788898877432 13455555443
No 240
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=54.79 E-value=54 Score=23.26 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=61.3
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAWK 122 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l~ 122 (262)
+.+||+...... ...+...|++ .|+++... .+..+....+.....+|.|+.-- .++.+ ++..+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEV--------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLE-VLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEE--------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHH-HHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHH-HHHHHH
Confidence 578999976543 4567888888 88866532 23332222332215689888742 34443 344455
Q ss_pred Hc-CCCCcEEEEeC-hh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 123 EA-GTPNVRIGVVG-AG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 123 ~~-~~~~~~i~aVG-~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
+. ...+.+|+.+. .. ....+.+. |.. ++..+..+.+.|.+.+...
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF------KVS-DYILKPYPTKRLENSVRSV 124 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS------CCS-EEEESSCCTTHHHHHHHHH
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc------CCC-EEEECCCCHHHHHHHHHHH
Confidence 41 12355665544 32 23334445 765 3566777888888777654
No 241
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=54.75 E-value=12 Score=35.10 Aligned_cols=139 Identities=12% Similarity=0.019 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCc
Q 024773 63 GKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 129 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~ 129 (262)
.++.+.|++.|+++..+|-+ ..-+. + ..++ .+..+++...-+..++..-....+.|++. +.+-+
T Consensus 234 ~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g-g-~~~~-ei~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~i 310 (519)
T 1qgu_B 234 RVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG-G-TTQQ-EMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPAT 310 (519)
T ss_dssp HHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC-C-BCHH-HHHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHcCCeEEEecCccccccCcccCcccccCC-C-CCHH-HHHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCeE
Confidence 68999999999999987754 22221 1 1122 23456777888877776545555666554 44433
Q ss_pred EE-EEeC-hhHHHHHHHhhhhcCCCCceeecCCCC--CHHHHHHHhhhC--CCCccEEEEEccCCChhhHHHHHHhCCCe
Q 024773 130 RI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (262)
Q Consensus 130 ~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~--t~e~L~~~l~~~--~~~g~~vL~~~g~~~~~~L~~~L~~~G~~ 203 (262)
.. +-+| ..|.+-|++..+.. |..+ |+.. --..+.+.+.+. ...|+|+++..+..-.-.|...|.+.|+.
T Consensus 311 ~~~~PiG~~~T~~~L~~la~~~--g~~~---~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElGm~ 385 (519)
T 1qgu_B 311 EVAIPLGLAATDELLMTVSQLS--GKPI---ADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCE 385 (519)
T ss_dssp CCCCCBSHHHHHHHHHHHHHHH--CCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTCE
T ss_pred ecCCCcchHHHHHHHHHHHHHH--CCCc---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCCCE
Confidence 33 2377 56777777762111 4431 2100 011223333221 12578988886544344567788899998
Q ss_pred eeEEee
Q 024773 204 VVRLNT 209 (262)
Q Consensus 204 v~~i~v 209 (262)
+..+.+
T Consensus 386 vv~v~~ 391 (519)
T 1qgu_B 386 PTVILS 391 (519)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 865544
No 242
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=54.42 E-value=9.4 Score=30.51 Aligned_cols=49 Identities=8% Similarity=0.100 Sum_probs=33.9
Q ss_pred hCCCeeeEEeeeccccCC----------------CChHHHHHHcCCCCEEEEeCH-------HHHHHHHHHh
Q 024773 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 247 (262)
Q Consensus 199 ~~G~~v~~i~vY~~~~~~----------------~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~~~ 247 (262)
+.|.+|+.+.+|+....+ ....++.+.+...|.|||.+| ...+.|++.+
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v 99 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHHHHHHHH
Confidence 457888888888754211 112334555668999999875 7889999987
No 243
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=54.23 E-value=9.6 Score=32.00 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEee-eCCCchHHHHHHhcCCCccEEEEeC
Q 024773 58 ERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (262)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~-~~~~~~~l~~~l~~l~~~d~IiFTS 110 (262)
+..+...+.+.|+..|++|..+|.-+.. ..++. +..+.+||.|||..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 3345678999999999999988542110 11111 11357899999985
No 244
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=54.16 E-value=6 Score=31.53 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHHH-HHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCCCCcE
Q 024773 65 LIKA-LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVR 130 (262)
Q Consensus 65 l~~~-L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~~~~~ 130 (262)
+.+. +++.|.++..+.+.+... ....+.+......+..+|.|||.|| ..++.|++.+....+.+.+
T Consensus 25 i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~ 104 (197)
T 2vzf_A 25 ALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKA 104 (197)
T ss_dssp HHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCE
T ss_pred HHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCE
Confidence 3344 566688777665543210 0011233444445678999999986 4667777765433344666
Q ss_pred EEEeC
Q 024773 131 IGVVG 135 (262)
Q Consensus 131 i~aVG 135 (262)
++.+|
T Consensus 105 ~~~~~ 109 (197)
T 2vzf_A 105 ALPLA 109 (197)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 245
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=53.95 E-value=71 Score=26.58 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=83.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~ 122 (262)
..|.||.+|||....+ ...+++.|.+.|++|...- +.. ++.+.+++..+.-.+..++. +|+...++.+++...
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFA--RHA--PDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SSC--CCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE--CCc--ccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 5688999999988765 3578899999999887542 111 12222222222223333332 388999998887654
Q ss_pred H-cCCCCcEEEEeC-------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-----
Q 024773 123 E-AGTPNVRIGVVG-------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (262)
Q Consensus 123 ~-~~~~~~~i~aVG-------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~----- 189 (262)
+ .+.-+.-|-.-| +.+.+..++. +.+.+...-......+..|.+ .+.+|+.+.+-.+
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~---~~G~IVnisS~~~~~~~~ 148 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVAS-------LERNLIHYYAMAHYCVPHLKA---TRGAIVNISSKTAVTGQG 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHH---HTCEEEEECCTHHHHCCS
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHh---cCCeEEEEeehhhccCCC
Confidence 4 332222233333 2233444443 222221111122333344432 2467888877432
Q ss_pred ---------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 ---------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 ---------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..+|...|++|..+.-
T Consensus 149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~P 183 (258)
T 4gkb_A 149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIP 183 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEec
Confidence 45677888899999988765
No 246
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=53.83 E-value=66 Score=27.18 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred CCeEEEeCCCCChHH-----HHHH--------HHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---
Q 024773 50 NPKVVVTRERGKNGK-----LIKA--------LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--- 112 (262)
Q Consensus 50 g~~VLitR~~~~~~~-----l~~~--------L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~--- 112 (262)
+.+|++.....+... +... |+.+ |++|+.+-. ..| .+++.+...+ .+.|+|..++..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--~vp---~e~iv~aa~e-~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--QVA---NEDFIKKAVE-LEADVLLVSQTVTQK 193 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--SBC---HHHHHHHHHH-TTCSEEEEECCCCTT
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--CCC---HHHHHHHHHH-cCCCEEEEEeecCCc
Confidence 457877765433222 2222 7788 999987755 222 2334344323 478888877633
Q ss_pred -----HHHHHHHHHHHcCC-CCcEEEEeChhH-HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 113 -----AGSVFLEAWKEAGT-PNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 113 -----aV~~f~~~l~~~~~-~~~~i~aVG~~T-a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+..+.+.+.+.+. +++++++=|... .+.+++. |....+ +....+..+++.+.+
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~i------Gad~~~-~da~~~~~~a~~l~~ 254 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKEL------GYDAGF-GPGRFADDVATFAVK 254 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHc------CCeEEE-CCchHHHHHHHHHHH
Confidence 23445666666665 358888888654 4445555 887644 444566666666543
No 247
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=53.80 E-value=19 Score=29.54 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHhC-CCcEEEeceEEeeeCC--C-------------c--hHHHHHHhcCCCccEEEEeCH-------HHHHHHHH
Q 024773 65 LIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (262)
Q Consensus 65 l~~~L~~~-G~~v~~~P~~~~~~~~--~-------------~--~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~ 119 (262)
+.+.+++. |.++..+.+.+....+ . . +.+......+..+|.|||.|| ..++.|++
T Consensus 24 i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~iD 103 (242)
T 1sqs_A 24 LSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIE 103 (242)
T ss_dssp HHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHHH
Confidence 44455555 9888877665432110 0 1 234444555678999999996 67888988
Q ss_pred HHH
Q 024773 120 AWK 122 (262)
Q Consensus 120 ~l~ 122 (262)
.+.
T Consensus 104 r~~ 106 (242)
T 1sqs_A 104 RIG 106 (242)
T ss_dssp HTG
T ss_pred HHH
Confidence 774
No 248
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=53.75 E-value=13 Score=30.01 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=24.6
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.||+||||..... ...+.+.|.+.|++|..+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 5688999999988653 467899999999987654
No 249
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=53.75 E-value=50 Score=30.72 Aligned_cols=108 Identities=7% Similarity=-0.020 Sum_probs=65.4
Q ss_pred CCCCccchhccccccccCCCCCCCeEEEeCCCCChHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE
Q 024773 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI 106 (262)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~I 106 (262)
.|.+..|++... +. ..+.||+|+|.......-.+.+.| .+.|++|...-.+ ...+.+.++..+..... +.+
T Consensus 262 ~r~~~~~~~~~~---d~-~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~---~~~~~~~~~~~~~~~~~-~v~ 333 (525)
T 3aek_B 262 STLRQPWWSASV---DS-TYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCY---NREMARPLRTAAAEYGL-EAL 333 (525)
T ss_dssp TTCCHHHHHHSG---GG-GGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEES---CGGGHHHHHHHHHHTTC-CCE
T ss_pred HHHHHHHHHHhh---hh-hhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecC---chhHHHHHHHHHHhcCC-cEE
Confidence 567788988744 32 678999999986555566788889 7999998654221 11122344444544432 455
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024773 107 IITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (262)
Q Consensus 107 iFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (262)
+......++.+ +.+.. ..++.-|..-+...++. |+..
T Consensus 334 i~~D~~el~~~---i~~~~---pDL~ig~~~~~~~a~~~------giP~ 370 (525)
T 3aek_B 334 ITDDYLEVEKA---IEAAA---PELILGTQMERNIAKKL------GLPC 370 (525)
T ss_dssp ECSCHHHHHHH---HHHHC---CSEEEECHHHHHHHHHH------TCCE
T ss_pred EeCCHHHHHHH---HhhcC---CCEEEecchhHHHHHHc------CCCE
Confidence 55555444433 33332 24555556666677777 8765
No 250
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=53.35 E-value=21 Score=25.95 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.8
Q ss_pred CCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 024773 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (262)
Q Consensus 46 ~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (262)
.++.|++|++|..-. ..+++.+.++.+|+.|.
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 579999999998864 47899999999999876
No 251
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=52.88 E-value=36 Score=25.27 Aligned_cols=60 Identities=25% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--------HHHHHHHHHHc--CCCCcEEE
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 132 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--------V~~f~~~l~~~--~~~~~~i~ 132 (262)
+.+.+.|.+.|+++..+.. .+ ...+.++|.|+|-++.- +..|++.+... ...+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 3455566677888765432 11 12467799988888754 56788877654 34456677
Q ss_pred EeC
Q 024773 133 VVG 135 (262)
Q Consensus 133 aVG 135 (262)
+.|
T Consensus 87 vfg 89 (147)
T 2hna_A 87 AIG 89 (147)
T ss_dssp EES
T ss_pred EEe
Confidence 666
No 252
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=52.84 E-value=1e+02 Score=26.10 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=47.3
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc---CCCCEEEEeCHH-
Q 024773 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPS- 238 (262)
Q Consensus 163 t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l---~~~d~ivFtS~s- 238 (262)
..+++.-.+.....+|.+|+++........+...+...|+++..+.+-.. -....+++.+.+ .+..+|+++++.
T Consensus 80 ~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~n 157 (386)
T 2dr1_A 80 GTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG--KAVKPEDLDDALRKNPDVEAVTITYNET 157 (386)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHCTTCCEEEEESEET
T ss_pred hHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC--CCCCHHHHHHHHhcCCCCcEEEEEeecC
Confidence 34444433333334567888887765433366667778887766665321 112334454444 367778887653
Q ss_pred ------HHHHHHHHhccc
Q 024773 239 ------AVRSWVNLISDT 250 (262)
Q Consensus 239 ------~~~~~~~~~~~~ 250 (262)
..+.+.+.++++
T Consensus 158 ptG~~~~l~~i~~l~~~~ 175 (386)
T 2dr1_A 158 STGVLNPLPELAKVAKEH 175 (386)
T ss_dssp TTTEECCHHHHHHHHHHT
T ss_pred CcchhCCHHHHHHHHHHc
Confidence 245555555543
No 253
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=52.74 E-value=41 Score=26.04 Aligned_cols=37 Identities=5% Similarity=0.254 Sum_probs=24.6
Q ss_pred HcCCCCEEEEeCH-------HHHHHHHHHhccc----CCCCCeEEEEC
Q 024773 225 QALSIPVVAVASP-------SAVRSWVNLISDT----EQWSNSVACIA 261 (262)
Q Consensus 225 ~l~~~d~ivFtS~-------s~~~~~~~~~~~~----~~~~~~i~~IG 261 (262)
.+...|.|+|-|| ..++.|++.+... .+.+.+++.++
T Consensus 65 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~ 112 (198)
T 3b6i_A 65 ELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFS 112 (198)
T ss_dssp GGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEE
T ss_pred HHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEE
Confidence 3558899999986 5678888776431 14556666553
No 254
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=52.64 E-value=82 Score=24.70 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=46.8
Q ss_pred cEEEEEccCCC------hhhHHHHHHhCCCeeeEEeeeccccCC----------------CChHHHHHHcCCCCEEEEeC
Q 024773 179 CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVAS 236 (262)
Q Consensus 179 ~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY~~~~~~----------------~~~~~~~~~l~~~d~ivFtS 236 (262)
.++|++-+... .+.+.+.|++.|++|+.+.+++..+.. .......+.+...|.|+|.|
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 35555554422 344566777788888888887751000 00001122345789999988
Q ss_pred H-------HHHHHHHHHhccc----CCCCCeEEEE
Q 024773 237 P-------SAVRSWVNLISDT----EQWSNSVACI 260 (262)
Q Consensus 237 ~-------s~~~~~~~~~~~~----~~~~~~i~~I 260 (262)
| ..++.|++.+... .+.+.+++++
T Consensus 87 P~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~ 121 (211)
T 1ydg_A 87 PTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAM 121 (211)
T ss_dssp EEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEE
T ss_pred CccccCccHHHHHHHHHhccccccccCCCCEEEEE
Confidence 5 6788888886421 1445665554
No 255
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=52.45 E-value=90 Score=26.36 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
++|++...... ..-+.+.|+++|. +.....+.. ..+. +.+...|..-.+.|+|+..+-......++
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYG--EWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEEC--TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeC--CCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHH
Confidence 47776654322 2346677888886 322222211 1121 23555565556789999999888888888
Q ss_pred HHHHcCCC---CcEEEEeChhHHH--HHHHhhhhcCCCCceeecC
Q 024773 120 AWKEAGTP---NVRIGVVGAGTAS--IFEEVIQSSKCSLDVAFSP 159 (262)
Q Consensus 120 ~l~~~~~~---~~~i~aVG~~Ta~--~L~~~~~~~~~G~~~~~~p 159 (262)
.+.+.+.. ++.|+.++..... .+..- .++....+
T Consensus 223 al~~~G~~vP~di~vvg~d~~~~~l~~~~~~------~lttv~~~ 261 (350)
T 3h75_A 223 AARELGRKPGTDLLFSGVNSSPEALQALIDG------KLSVLEAG 261 (350)
T ss_dssp HHHHTTCCBTTTBEEEEESCCHHHHHHHHHT------SSCEEEEC
T ss_pred HHHHcCCCCCCCeEEEecCCCHHHHHHHHcC------CeeEEEcC
Confidence 88888864 7889998865433 55554 56554443
No 256
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=51.74 E-value=9 Score=32.88 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=47.6
Q ss_pred CCCCCCeEEEeCCCC--C------hHHHHHHHHhCCCcEEEeceEEeeeCC--C--------------------------
Q 024773 46 ASNSNPKVVVTRERG--K------NGKLIKALAKHRIDCLELPLIQHAQGP--D-------------------------- 89 (262)
Q Consensus 46 ~~l~g~~VLitR~~~--~------~~~l~~~L~~~G~~v~~~P~~~~~~~~--~-------------------------- 89 (262)
..+..|+|||.-+.. + .+.+.+.|++.|.+|..+-+|...+.+ +
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQG 97 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHT
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcC
Confidence 335677888764322 1 245677888999999988777643311 0
Q ss_pred --chHHHHHHhcCCCccEEEEeC-------HHHHHHHHHHHHHc
Q 024773 90 --TDRLSSVLNADTIFDWIIITS-------PEAGSVFLEAWKEA 124 (262)
Q Consensus 90 --~~~l~~~l~~l~~~d~IiFTS-------~~aV~~f~~~l~~~ 124 (262)
..++.+..+.+...|.|||.+ |...+.|++.+-..
T Consensus 98 ~~~~dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~ 141 (280)
T 4gi5_A 98 TQSADIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAW 141 (280)
T ss_dssp CSCHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCB
T ss_pred CCcHHHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhccc
Confidence 112333333456789999987 46778888876543
No 257
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=51.50 E-value=65 Score=27.34 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=49.1
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC--hHHHHHHcCCCCEEEEeCHHHHHHHHHHhcccCCCC
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~--~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~~~~~ 254 (262)
+|+||.++..- +.+.+ +.+.++ ++.|.++.+..-. .......+...|+++.|.++-+..-++.+-+.....
T Consensus 140 ~g~kV~vIG~f---P~i~~-~~~~~~---~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a 212 (270)
T 3l5o_A 140 KGKKVGVVGHF---PHLES-LLEPIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTHHH-HHTTTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCc---hhHHH-HHhcCC---CEEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCC
Confidence 57899888643 34444 555555 4566677665543 223334467999999999998766555544332223
Q ss_pred CeEEEECC
Q 024773 255 NSVACIAG 262 (262)
Q Consensus 255 ~~i~~IGp 262 (262)
..++-+||
T Consensus 213 ~~vvl~GP 220 (270)
T 3l5o_A 213 RRITLVGP 220 (270)
T ss_dssp SEEEEEST
T ss_pred CEEEEECC
Confidence 56777887
No 258
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=51.49 E-value=48 Score=28.40 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
.++|++.....-...+.+.|.+.|. +..+.. +..... .+.+.+++. .++++|.++.+.++--.+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHT--CSTTEEEEEECCSSHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhc--ChhhccEEEEcCCccHHH
Confidence 4578887765556677777777776 443311 111111 111222211 467899999988765544
Q ss_pred HHHHH--HHcCCCCcEEEEe--ChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH
Q 024773 117 FLEAW--KEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (262)
Q Consensus 117 f~~~l--~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~ 170 (262)
..-.+ ++.+ ++.++++. .+...+.+++. |.+..+.|+...+..+++.
T Consensus 192 ~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~ 242 (336)
T 1lnq_A 192 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 242 (336)
T ss_dssp HHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHH
Confidence 43332 2222 34566654 56777888888 9987777765555555443
No 259
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.42 E-value=17 Score=29.88 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeC--h
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG--A 136 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG--~ 136 (262)
-+.+.++++|..+....++......+ .+.+.+.+..-...|+|+.++-......++.+.+.+. +++.|++.+ .
T Consensus 148 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~ 227 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIGMND 227 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECSC
T ss_pred HHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeCCCC
Confidence 46667888887654333332211111 1234444544456899999988888888888888875 477888887 5
Q ss_pred hHH
Q 024773 137 GTA 139 (262)
Q Consensus 137 ~Ta 139 (262)
...
T Consensus 228 ~~~ 230 (289)
T 3g85_A 228 REY 230 (289)
T ss_dssp HHH
T ss_pred cch
Confidence 443
No 260
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.26 E-value=23 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHcCCCCEEEEeCH-------HHHHHHHHHhccc---CCCCCeEEEEC
Q 024773 222 VLKQALSIPVVAVASP-------SAVRSWVNLISDT---EQWSNSVACIA 261 (262)
Q Consensus 222 ~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~---~~~~~~i~~IG 261 (262)
+.+.+...|.|||.|| ...++|++.+... .+.+.+++.++
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 4444568999999886 5788898888652 24566666553
No 261
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=51.02 E-value=53 Score=26.09 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHHc-
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKEA- 124 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~l~~~- 124 (262)
.+++||||..... ...+++.|.+.|++|...- .+.+.++.....+....++. +++..+++.+++.+.+.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMA-------RDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4688999988764 4678999999999876431 12222333332333333332 46788888877765442
Q ss_pred CCCCcEEEEeC
Q 024773 125 GTPNVRIGVVG 135 (262)
Q Consensus 125 ~~~~~~i~aVG 135 (262)
+.-+.-|.+.|
T Consensus 77 ~~id~li~~Ag 87 (234)
T 2ehd_A 77 GELSALVNNAG 87 (234)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 22244444444
No 262
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=50.73 E-value=13 Score=31.42 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=44.1
Q ss_pred EEEEEccCCC--------hhhHHHHHHhCCCeeeEEeeeccccCC------------------------------CChHH
Q 024773 180 TVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVH------------------------------HVDQT 221 (262)
Q Consensus 180 ~vL~~~g~~~--------~~~L~~~L~~~G~~v~~i~vY~~~~~~------------------------------~~~~~ 221 (262)
++|++.|.-. .+.+.+.|++.|.+|+.+.+|+....+ ....+
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 83 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD 83 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence 5666655432 234455677789999999999764200 00012
Q ss_pred ---HHHHcCCCCEEEEeCH-------HHHHHHHHHhc
Q 024773 222 ---VLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (262)
Q Consensus 222 ---~~~~l~~~d~ivFtS~-------s~~~~~~~~~~ 248 (262)
..+.+...|.|||.+| ...+.|++.+-
T Consensus 84 ~~~~~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 84 IVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVF 120 (273)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCEEEEECchhhccCCHHHHHHHHHHH
Confidence 2233558999999885 78999999864
No 263
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=50.70 E-value=25 Score=25.81 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 024773 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (262)
..+|.|++|++|..-. .++++.+.++.+|+.|.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 3579999999998764 46889999999999886
No 264
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=50.66 E-value=22 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=26.8
Q ss_pred ccCCCCCCCeEEEeC-CCCChHHHHHHHHhCCCcEE
Q 024773 43 SASASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (262)
Q Consensus 43 ~~~~~l~g~~VLitR-~~~~~~~l~~~L~~~G~~v~ 77 (262)
+.+..+.|.++.++. .......+.+.++.+|+.+.
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 345789999999997 34457789999999999976
No 265
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=50.29 E-value=77 Score=27.48 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=39.1
Q ss_pred hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHH-------HHHHHHHHhcccCCCCCeEEEEC
Q 024773 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 191 ~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s-------~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
+.+.+.|.+.|..++.+.+. . ....++.+.+...|.++|-||. .++.|++.+....+.+.+++++|
T Consensus 270 ~~ia~~l~~~g~~v~~~~~~---~--~~~~~~~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 270 HALMDGLVAGGCEVKLFKLS---V--SDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHHTTCEEEEEEGG---G--SCHHHHHHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEECC---C--CCHHHHHHHHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 34455666677655444332 1 1223444445688999999863 57788887654334567777665
No 266
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=50.10 E-value=1.2e+02 Score=25.99 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=40.0
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-------hHHHHHHcCCCCEEEEeCHHH
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-------~~~~~~~l~~~d~ivFtS~s~ 239 (262)
.|+++.+++-..-...+...|+..|++| ..|.+.+.... ..++.+.+...|+|++.-|.+
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt 204 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPL---RCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNT 204 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCE---EEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCc
Confidence 4688888877766778999999999865 45554332211 123444456899999987644
No 267
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=49.96 E-value=8.3 Score=31.82 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEee--eCCC-----------------------------chHHHHHHhcCCCccEEEEeCH
Q 024773 63 GKLIKALAKHRIDCLELPLIQHA--QGPD-----------------------------TDRLSSVLNADTIFDWIIITSP 111 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~--~~~~-----------------------------~~~l~~~l~~l~~~d~IiFTS~ 111 (262)
+.+.+.+++.|.+|..+-+++.. |.-+ .+.+......+..+|.|||.+|
T Consensus 22 ~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~iv~~~P 101 (228)
T 3tem_A 22 NVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFP 101 (228)
T ss_dssp HHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEEEEECC
Confidence 34566667779999888776642 2111 1233344445667888888876
Q ss_pred H-------HHHHHHHHH
Q 024773 112 E-------AGSVFLEAW 121 (262)
Q Consensus 112 ~-------aV~~f~~~l 121 (262)
. .++.|++.+
T Consensus 102 ~y~~~~p~~lK~~iD~~ 118 (228)
T 3tem_A 102 LYWFSVPAILKGWMDRV 118 (228)
T ss_dssp CBTTBCCHHHHHHHHHH
T ss_pred hhhcccCHHHHHHHHHH
Confidence 3 455666554
No 268
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=49.65 E-value=81 Score=29.07 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=77.4
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEeCh-
Q 024773 60 GKNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA- 136 (262)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~-~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~-~~~~~~~i~aVG~- 136 (262)
.+..++.+.|++.|+++..+. +. ...++ ++.+++.+.-+..++.......+.|++ .+.+-..+--+|.
T Consensus 233 gD~~eik~lL~~~Gi~v~~~~-----~g~~t~~e----i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~ 303 (492)
T 3u7q_A 233 GDAWSSRILLEEMGLRCVAQW-----SGDGSISE----IELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPT 303 (492)
T ss_dssp TTTHHHHHHHHHTTCEEEEEE-----ETTCCHHH----HHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHH
T ss_pred hhHHHHHHHHHHCCCeEEEEe-----CCCCCHHH----HHhhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHH
Confidence 346889999999999998653 21 12233 345667788888887666666666654 3443111112554
Q ss_pred hHHHHHHHhhhhcCCCCceeecCCCCCHHHH--------HHHhhhC--CCCccEEEEEccCCChhhHHHHHHhCCCeeeE
Q 024773 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKIL--------ASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (262)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L--------~~~l~~~--~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (262)
.|.+-|++.. .+.|.. .|+ ..|.+ .+.+... ...|+|+.+..+....-.+...|.+.|++|..
T Consensus 304 ~T~~~L~~ia--~~~g~~---~~~--~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~ 376 (492)
T 3u7q_A 304 KTIESLRAIA--AKFDES---IQK--KCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVG 376 (492)
T ss_dssp HHHHHHHHHH--TTSCHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEE
T ss_pred HHHHHHHHHH--HHhCCc---chH--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHCCCEEEE
Confidence 3666666662 111321 111 11111 1222211 12578988877766666788899999998876
Q ss_pred Eeee
Q 024773 207 LNTY 210 (262)
Q Consensus 207 i~vY 210 (262)
+-.+
T Consensus 377 ~gt~ 380 (492)
T 3u7q_A 377 TGYE 380 (492)
T ss_dssp EEES
T ss_pred EeCC
Confidence 5444
No 269
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=49.32 E-value=59 Score=30.14 Aligned_cols=112 Identities=12% Similarity=0.105 Sum_probs=74.3
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
++|+|.....-...+++.|.+.|.++..+-. +.--+ .+.+.+++ . .+.++|.+|.+..+--.++.-
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~-t~~~~L~~-a-gi~~ad~vi~~~~~d~~ni~~ 425 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDA-TVGQTLRQ-A-GIDRASGIIVTTNDDSTNIFL 425 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCS-SSSTHHHH-H-TTTSCSEEEECCSCHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCC-CCHHHHHh-c-CccccCEEEEECCCchHHHHH
Confidence 7788887776678899999999988765431 11111 12233333 2 578999999998887666654
Q ss_pred HH--HHcCCCCcEEE--EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 120 AW--KEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 120 ~l--~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
.+ ++.+. +.+++ +-.+...+.|++. |.+..+.|+...++.+++.+.
T Consensus 426 ~~~ak~l~~-~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~~~~i~~~~~ 475 (565)
T 4gx0_A 426 TLACRHLHS-HIRIVARANGEENVDQLYAA------GADFVVSNASVGANILGNLLE 475 (565)
T ss_dssp HHHHHHHCS-SSEEEEEESSTTSHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEccchHHHHHHHHHhc
Confidence 43 33343 33444 5667778889998 999878887666677766654
No 270
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=49.29 E-value=91 Score=24.25 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=62.2
Q ss_pred eEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcE
Q 024773 52 KVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (262)
Q Consensus 52 ~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~ 130 (262)
+||+.-.... ...+...|+..|++|... .+..+....+ .-..+|.++....++.+. +..+.+. ..+.+
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~~-~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALSF-VSRIKEK-HSSIV 70 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHHH-HHHHHHH-CTTSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHHH-HHHHHhC-CCCCc
Confidence 5777755432 356777888888876422 2333333444 235799999444455543 4445544 32667
Q ss_pred EEEeChh----HHHHHHHhhhhcCCCCceeecCCCC-CHHHHHHHhhhCC
Q 024773 131 IGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (262)
Q Consensus 131 i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~-t~e~L~~~l~~~~ 175 (262)
|+.+... ....+.+. |.. ++..+.. +.+.|...+....
T Consensus 71 ii~lt~~~~~~~~~~~~~~------Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQ------GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEESSCCHHHHHHHHHH------TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHc------CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 6665432 33344455 765 4667778 8889988877654
No 271
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=49.24 E-value=17 Score=29.97 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=44.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeC--CC--chHHHHHHhcCCC--ccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeC
Q 024773 65 LIKALAKHRIDCLELPLIQHAQG--PD--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~--~~--~~~l~~~l~~l~~--~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG 135 (262)
+.+.++++|..+...-+...... .. .+.+.+.+....+ .|+|+.++-......++.+.+.+. +++.|++.+
T Consensus 158 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 237 (298)
T 3tb6_A 158 FIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYD 237 (298)
T ss_dssp HHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 56677788876543222222111 11 2334555555555 888888888777777777877775 366777776
Q ss_pred hhH
Q 024773 136 AGT 138 (262)
Q Consensus 136 ~~T 138 (262)
...
T Consensus 238 ~~~ 240 (298)
T 3tb6_A 238 DSH 240 (298)
T ss_dssp CCT
T ss_pred CcH
Confidence 543
No 272
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=49.18 E-value=1.5e+02 Score=26.80 Aligned_cols=207 Identities=11% Similarity=0.052 Sum_probs=96.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece--------------EEeeeC-CCchHHHHHHhcCCCccEEEE-eCHHH
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL--------------IQHAQG-PDTDRLSSVLNADTIFDWIII-TSPEA 113 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~--------------~~~~~~-~~~~~l~~~l~~l~~~d~IiF-TS~~a 113 (262)
.|+|+|.....-...+++.|.+.|.+|..+-. ..+.-. .+.+-|+++ .+++.|.+|- |+.-.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~A--gi~~ad~~ia~t~~De 80 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEA--GAQDADMLVAVTNTDE 80 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHH--TTTTCSEEEECCSCHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhc--CCCcCCEEEEEcCChH
Confidence 56777777666566777777777766553311 001111 112222222 4678898876 55545
Q ss_pred HHHHHHHHHHcCCCCcEEEE-eChh-HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCC------CccE--EEE
Q 024773 114 GSVFLEAWKEAGTPNVRIGV-VGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------KKCT--VLY 183 (262)
Q Consensus 114 V~~f~~~l~~~~~~~~~i~a-VG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~------~g~~--vL~ 183 (262)
+.-+.-.+.+.-....++++ +-.. -.+..+..+....-|+...+.|+...++.+.+.+..-.. .+++ ++-
T Consensus 81 ~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~~~~f~~g~~~l~e 160 (461)
T 4g65_A 81 TNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVA 160 (461)
T ss_dssp HHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEEEEEeccceEEEEE
Confidence 55444433332112333443 3321 111111111111127777777876667777666542110 1111 111
Q ss_pred EccC----CChhhHHHHHHhC--CCeeeEEeeeccccCCCChHHHHHHcC-CCCEEEEeCHHHHHHHHHHhcccCCCCCe
Q 024773 184 PASA----KASNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASPSAVRSWVNLISDTEQWSNS 256 (262)
Q Consensus 184 ~~g~----~~~~~L~~~L~~~--G~~v~~i~vY~~~~~~~~~~~~~~~l~-~~d~ivFtS~s~~~~~~~~~~~~~~~~~~ 256 (262)
++-. .....+.+ |... ...+.-+.+|+....-.+..+ ..++ +-.+.+++++..++.+.+.++.......+
T Consensus 161 ~~v~~~s~l~g~~l~~-l~~~~p~~~~~I~aI~R~g~~iiP~g~--t~i~~gD~v~~i~~~~~i~~~~~~~g~~~~~~~~ 237 (461)
T 4g65_A 161 VKAYYGGPLVGNALSA-LREHMPHIDTRVAAIFRQGRPIRPQGT--TIIEADDEVFFVAASNHIRSVMSELQRLEKPYRR 237 (461)
T ss_dssp EECCTTSSSTTCBHHH-HHHTSTTSCEEEEEEEETTEEECCCTT--CBCCTTCEEEEEEETTTHHHHHHHTTGGGSCCCE
T ss_pred EEecCCCeecCCcHHH-HHhhCCCCceEEEEEEECCeeccCCCC--ceecCCCEEEEEeccchHHHHHHhhccccccccE
Confidence 2111 11222222 2222 123444666664332111111 1134 34455667888899999988765444557
Q ss_pred EEEEC
Q 024773 257 VACIA 261 (262)
Q Consensus 257 i~~IG 261 (262)
++.+|
T Consensus 238 v~I~G 242 (461)
T 4g65_A 238 IMIVG 242 (461)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77776
No 273
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=49.12 E-value=28 Score=30.45 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCeEEEe-CCCCCh-H----HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHH
Q 024773 50 NPKVVVT-RERGKN-G----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (262)
Q Consensus 50 g~~VLit-R~~~~~-~----~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~ 116 (262)
+++|++. .+..++ + .+.+.+.+.|+++..+.+ .. .+.. .....+.++|.|+|.|+. .+..
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~-~~~~---~~~~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KA-CHHS---QIMSEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TT-SCHH---HHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CC-CCHH---HHHHHHHHCCEEEEECCccCCCchHHHHH
Confidence 4566655 333332 3 344566666765543322 21 1222 223345789999999963 5788
Q ss_pred HHHHHHHcCCCCcEEEEeC
Q 024773 117 FLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG 135 (262)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8887766555566777666
No 274
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=49.12 E-value=63 Score=22.36 Aligned_cols=109 Identities=6% Similarity=-0.019 Sum_probs=64.4
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (262)
.++||+...+.. ...+.+.|++.|+++... .+.++....+.. ..+|.|++-- .++.+ +++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~-~~~~l~~~ 72 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYV--------MSGTDALHAMST-RGYDAVFIDLNLPDTSGLA-LVKQLRAL 72 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------SSHHHHHHHHHH-SCCSEEEEESBCSSSBHHH-HHHHHHHS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------CCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 568999876543 457888899998754432 233334444433 4689888753 23443 44445554
Q ss_pred C-CCCcEEEEeChhH-H--HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC
Q 024773 125 G-TPNVRIGVVGAGT-A--SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (262)
Q Consensus 125 ~-~~~~~i~aVG~~T-a--~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (262)
. ..+.+++.+.... . ...... |.. ++..+..+.+.|.+.+....
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACE------LFD-FYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHH------HCS-EEEESSCCHHHHHHHHHHHC
T ss_pred hccCCCCEEEEECCcchhHHHHHHH------hhH-HheeCCCCHHHHHHHHHHhh
Confidence 2 3466766654322 1 233344 654 46677889999998887543
No 275
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=49.11 E-value=26 Score=32.84 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=81.1
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEeC-hh
Q 024773 61 KNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~-~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~-~~~~~~i~aVG-~~ 137 (262)
+..++.+.|++.|+++..+ -+. ...+ .+..++..+.-+..++.......+.|++. +.+-+.+.-+| ..
T Consensus 220 D~~eikrlL~~~Gi~v~~~-----~~gg~t~~----ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~~~ 290 (533)
T 1mio_A 220 DAWEMDRVLEKIGYHVNAT-----LTGDATYE----KVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDG 290 (533)
T ss_dssp HHHHHHHHHHHHTCEEEEE-----EETTCCHH----HHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHH
T ss_pred hHHHHHHHHHHCCCeEEEE-----eCCCCCHH----HHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCHHH
Confidence 4578999999999998852 121 1222 34578889999998887777777777653 44422222466 45
Q ss_pred HHHHHHHhhhhcCCCCcee--ecCCCCC--HHHHHHHhhhC--CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeec
Q 024773 138 TASIFEEVIQSSKCSLDVA--FSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~--~~p~~~t--~e~L~~~l~~~--~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
|.+.|++..+ +.|.... -.++... -..+.+.|... ...|+++.+..+....-.+...|.+.|+.|..+..+.
T Consensus 291 T~~~Lr~ia~--~~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~ 368 (533)
T 1mio_A 291 IVETLRDMAK--CFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESS
T ss_pred HHHHHHHHHH--HhCCCcccccchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEecc
Confidence 7777776621 1143100 0000000 00111122111 1257898887776666678889999999987665443
No 276
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=48.80 E-value=12 Score=31.53 Aligned_cols=145 Identities=8% Similarity=-0.040 Sum_probs=79.7
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHh
Q 024773 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (262)
...+++.|.+..+.|+ ++.+ .+.++..+.++ .++..+-.|-|.=.+.+- .+. . ....+..
T Consensus 20 n~~~~~~gl~~~Y~~~-~v~~-~~l~~~~~~~~--~~~~G~nVT~P~K~~v~~-~~d--------------~-~~~A~~i 79 (253)
T 3u62_A 20 NEYFKRAGMNHSYGME-EIPP-ESFDTEIRRIL--EEYDGFNATIPHKERVMR-YVE--------------P-SEDAQRI 79 (253)
T ss_dssp HHHHHHHTCCCEEEEE-ECCG-GGHHHHHHHHH--HHCSEEEECTTCTTGGGG-GSE--------------E-CHHHHHH
T ss_pred HHHHHHcCCCCEEEeE-ecCH-HHHHHHHHHHh--hCCCceeecCChHHHHHH-HhC--------------C-CHHHHHc
Confidence 3567788888766544 2221 12233333332 457888888876544321 111 1 1112222
Q ss_pred hhhcCCCC-ceee--cCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCC------
Q 024773 146 IQSSKCSL-DVAF--SPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH------ 216 (262)
Q Consensus 146 ~~~~~~G~-~~~~--~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~------ 216 (262)
|- +... ....-+..|++..|.+...++ +++++.+......+...|.+.|+ .++.+|.+....
T Consensus 80 ------GAvNTi~~~~G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~ka~~la~ 150 (253)
T 3u62_A 80 ------KAVNCVFRGKGYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIERAKALDF 150 (253)
T ss_dssp ------TCCCEEETTEEECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHHHHTCCS
T ss_pred ------CcceEeecCEEEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHH
Confidence 21 1111 122345678888887654467 99999887777788888988886 446666553211
Q ss_pred C----ChHHHHHHcCCCCEEEEeCHHH
Q 024773 217 H----VDQTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 217 ~----~~~~~~~~l~~~d~ivFtS~s~ 239 (262)
. ..+++.+.+...|+|+-+.|..
T Consensus 151 ~~~~~~~~~~~~~~~~aDiVInatp~g 177 (253)
T 3u62_A 151 PVKIFSLDQLDEVVKKAKSLFNTTSVG 177 (253)
T ss_dssp SCEEEEGGGHHHHHHTCSEEEECSSTT
T ss_pred HcccCCHHHHHhhhcCCCEEEECCCCC
Confidence 0 1122223345789999887754
No 277
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=48.79 E-value=62 Score=22.14 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAWKE 123 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l~~ 123 (262)
+++||+...... ...+...|+..|+++... .+.++....+.. ..+|.+++-- .++. .+.+.+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~-~~~~~l~~ 74 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDET--------TDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGY-LICGKLKK 74 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEE--------CCHHHHHHHHHH-HCCSEEEEESBCGGGCBHH-HHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEe--------cCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHH-HHHHHHhc
Confidence 468998866543 456788888888865422 233333334433 3589888742 2344 34555555
Q ss_pred cC-CCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 124 AG-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 124 ~~-~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.. ..+.++++++....+...+.+. .|.. ++..+..+.+.|...+..
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~---~g~~-~~l~kp~~~~~l~~~i~~ 121 (127)
T 2gkg_A 75 DDDLKNVPIVIIGNPDGFAQHRKLK---AHAD-EYVAKPVDADQLVERAGA 121 (127)
T ss_dssp STTTTTSCEEEEECGGGHHHHHHST---TCCS-EEEESSCCHHHHHHHHHH
T ss_pred CccccCCCEEEEecCCchhHHHHHH---hCcc-hheeCCCCHHHHHHHHHH
Confidence 42 3467777765444333333311 1654 356677888888877654
No 278
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=48.53 E-value=74 Score=28.73 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=81.7
Q ss_pred CeEEEeCCCCCh--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCC
Q 024773 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (262)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~ 128 (262)
++|-+...-... .++.+.|++.|++|..++- ....++ +..++.....+..++..- ...+.+++.. +
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~-----~~~~~e----l~~~~~A~~ni~~~~~~~-~~A~~Le~~~--g 264 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLP-----AKRYTE----LPVIDEGYYVAGVNPFLS-RTATTLIRRR--K 264 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEES-----CSSGGG----CCCCCTTCEEEESSTTCH-HHHHHHHHTT--C
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeC-----CCCHHH----HHccccCcEEEEcCHhHH-HHHHHHHHHc--C
Confidence 356555443333 3689999999999986422 122222 345677777777776653 4445554432 3
Q ss_pred cEEEE----eC-hhHHHHHHHhhhhcCCCCceeecCCCCC--HHHHHHHhhhC--CCCccEEEEEccCCChhhHHHHHHh
Q 024773 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (262)
Q Consensus 129 ~~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~t--~e~L~~~l~~~--~~~g~~vL~~~g~~~~~~L~~~L~~ 199 (262)
++.+. +| ..|.+.|++..+. .|.. |+... -..+.+.+... ...|+|+++..+....-.|...|.+
T Consensus 265 iP~~~~~~P~G~~~T~~~Lr~ia~~--~g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~e 338 (460)
T 2xdq_A 265 CQLITAPFPIGPDGTRTWIEQICAT--FGIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIR 338 (460)
T ss_dssp CEEECCCCSBHHHHHHHHHHHHHHH--TTCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHH
T ss_pred CCceecCcCccHHHHHHHHHHHHHH--HCcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHH
Confidence 33333 55 6788887776221 2543 22211 11222223221 1257899988877777788899999
Q ss_pred CCCeeeEEee
Q 024773 200 RGFEVVRLNT 209 (262)
Q Consensus 200 ~G~~v~~i~v 209 (262)
.|++|..+.+
T Consensus 339 lGm~vv~~gt 348 (460)
T 2xdq_A 339 CGMRVLEIGI 348 (460)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEeCC
Confidence 9998876543
No 279
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=48.47 E-value=67 Score=23.96 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=39.8
Q ss_pred ChHHHHHHHHhCCCcEEEeceEE-------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE
Q 024773 61 KNGKLIKALAKHRIDCLELPLIQ-------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~-------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~a 133 (262)
+...+.+...+.+-.+....... ..+..+.++-.+.+..++..|.++..|+.. |.+.+.+. +.++++
T Consensus 17 GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~---f~~~~~~l---~~~~iv 90 (143)
T 3glv_A 17 GHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD---MMKTVIEV---KPDIIT 90 (143)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC---HHHHHHHH---CCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh---HHHHHHhc---CCCEEE
Confidence 34566666666654433322221 112223333344555666689999988765 44545554 567888
Q ss_pred eChh
Q 024773 134 VGAG 137 (262)
Q Consensus 134 VG~~ 137 (262)
+|.-
T Consensus 91 ~G~d 94 (143)
T 3glv_A 91 LGYD 94 (143)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 8864
No 280
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=48.25 E-value=14 Score=30.33 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=51.6
Q ss_pred CeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH---------------
Q 024773 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------------- 113 (262)
Q Consensus 51 ~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a--------------- 113 (262)
+||++.+.. +....+...|++.|+++..+.++...+.++ .+.++|+||++-...
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~GGp~~~~~~~~~~~~~~~~ 71 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMGGPQSPSSTKKEFPYYDAQ 71 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECCCSSCTTCCTTTCTTCCHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECCCCCCcccccccCcccchH
Confidence 466666554 345688999999999998887776554332 245799999984311
Q ss_pred -HHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhh
Q 024773 114 -GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVI 146 (262)
Q Consensus 114 -V~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~ 146 (262)
...++..+-+ .+++++.|.=. .+.|-..+
T Consensus 72 ~~~~~i~~~~~---~~~PvLGIClG-~QlL~~~~ 101 (236)
T 3l7n_A 72 AEVKLIQKAAK---SEKIIVGVCLG-AQLMGVAY 101 (236)
T ss_dssp HHHHHHHHHHH---TTCEEEEETHH-HHHHHHHT
T ss_pred HHHHHHHHHHH---cCCCEEEEchH-HHHHHHHh
Confidence 2223332222 26788877654 55566554
No 281
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=48.23 E-value=19 Score=29.67 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~l 121 (262)
.+.|++||||..... ...+++.|.+.|++|+..- +.....+++...+...+ .+..+ +|+..+++.+++.+
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~----r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~ 100 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTA----RDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATGV 100 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE----CCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHHH
Confidence 367899999988764 4678999999999876431 11001122222232221 22222 36888888888776
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 101 ~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 101 LAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 443 32244455554
No 282
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=47.92 E-value=50 Score=27.05 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=44.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCC-CccEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|+..- ....+ .+.....+...+ ....+. +|+..+++.+++.
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTY----NGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISA 79 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc----CCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3578999999988765 4679999999999886431 11111 122222232222 222221 4788888888877
Q ss_pred HHHc
Q 024773 121 WKEA 124 (262)
Q Consensus 121 l~~~ 124 (262)
+.+.
T Consensus 80 ~~~~ 83 (259)
T 3edm_A 80 AADK 83 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 283
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=47.88 E-value=53 Score=28.15 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred CeEEEeCCCCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHH
Q 024773 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLE 119 (262)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~f~~ 119 (262)
.-|++...+..+..+ .+..++.|++...+.+-+. ...+++...+ +.....|.|+..-|-- + +...+
T Consensus 37 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~ 113 (285)
T 3l07_A 37 LVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH---TTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 113 (285)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHh
Confidence 345555544433333 3455677988876544211 1234454444 4456899999998721 1 22233
Q ss_pred HHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEc-cCCChhhHHHH
Q 024773 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEG 196 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~-g~~~~~~L~~~ 196 (262)
.+... ..+=.+++.-...|- . |-...+.| -|..+.++.+..+. ..|++++++. |+.....+...
T Consensus 114 ~I~p~----KDVDG~~~~N~G~l~-~------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~l 180 (285)
T 3l07_A 114 SIKPE----KDVDGFHPTNVGRLQ-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQL 180 (285)
T ss_dssp HSCGG----GBTTCCSHHHHHHHH-H------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred hCCcc----cccccCChhheeehh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHH
Confidence 22211 112122333333332 1 32122444 47888888777663 4688988887 44456778899
Q ss_pred HHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH
Q 024773 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (262)
Q Consensus 197 L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~ 237 (262)
|.+.|++|+- ++++. . .+.+.+...|+|+-+.+
T Consensus 181 L~~~gAtVtv--~hs~t---~---~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 181 LLNAKATVTT--CHRFT---T---DLKSHTTKADILIVAVG 213 (285)
T ss_dssp HHHTTCEEEE--ECTTC---S---SHHHHHTTCSEEEECCC
T ss_pred HHHCCCeEEE--EeCCc---h---hHHHhcccCCEEEECCC
Confidence 9999998743 33321 1 23344578999988776
No 284
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=47.71 E-value=72 Score=22.59 Aligned_cols=111 Identities=10% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhcC---------CCccEEEEeC----
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD---------TIFDWIIITS---- 110 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~l---------~~~d~IiFTS---- 110 (262)
...+++||+...+.. ...+...|+..|+ .+... .+.++....+... ..+|.|++--
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~ 74 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRC--------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPG 74 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEE--------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSS
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEE--------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCC
Confidence 345778999876543 4567888998887 33321 2333344445331 5688888742
Q ss_pred HHHHHHHHHHHHHcC-CCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 111 PEAGSVFLEAWKEAG-TPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 111 ~~aV~~f~~~l~~~~-~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.++.+ ++..+.+.. ..+++++++ +..+ ...+.+. |.. ++.++..+.+.|.+.+..
T Consensus 75 ~~g~~-~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 134 (149)
T 1k66_A 75 TDGRE-VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY------SIS-SYIVKPLEIDRLTETVQT 134 (149)
T ss_dssp SCHHH-HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred CCHHH-HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC------CCC-EEEeCCCCHHHHHHHHHH
Confidence 23433 344444432 135565554 3322 3333445 665 366777888888877654
No 285
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=47.65 E-value=77 Score=22.92 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l 121 (262)
...+.+|||...+.. ...+...|+..|+.+... .+..+....+.. ..+|.|++-- .++.+ ++..+
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~-~~~~l 80 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPT-LLARI 80 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHH-HHHHH
Confidence 345678999976643 456778888888655432 233333444433 4689888753 23443 33444
Q ss_pred HHcCCCCcEEEEeChh-HHH---HHHHhhhhcCCC-CceeecCCCCCHHHHHHHhhh
Q 024773 122 KEAGTPNVRIGVVGAG-TAS---IFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 122 ~~~~~~~~~i~aVG~~-Ta~---~L~~~~~~~~~G-~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+.. .+++|+++... ..+ .+.+. | .. ++..+..+.+.|...+..
T Consensus 81 ~~~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~~-~~l~KP~~~~~l~~~i~~ 129 (153)
T 3hv2_A 81 HQQY-PSTTRILLTGDPDLKLIAKAINE------GEIY-RYLSKPWDDQELLLALRQ 129 (153)
T ss_dssp HHHC-TTSEEEEECCCCCHHHHHHHHHT------TCCS-EEECSSCCHHHHHHHHHH
T ss_pred HhHC-CCCeEEEEECCCCHHHHHHHHhC------CCcc-eEEeCCCCHHHHHHHHHH
Confidence 4432 35666665532 222 33344 6 54 467778888888877754
No 286
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=47.59 E-value=95 Score=26.13 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceE------Eee--eCCCchHHHHHHhcCCCccEEEEeC
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLI------QHA--QGPDTDRLSSVLNADTIFDWIIITS 110 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~------~~~--~~~~~~~l~~~l~~l~~~d~IiFTS 110 (262)
...+.+|+||||..... ...+++.|.+.|++|..+--- +.. .+.+.+.+...+ .+.|+||.+-
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~A 85 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI---MGVSAVLHLG 85 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH---TTCSEEEECC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH---hCCCEEEECC
Confidence 35678999999988653 467899999999998865221 111 122334455554 4789998754
No 287
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=47.59 E-value=71 Score=25.32 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHcCCCCEEEEeCH-------HHHHHHHHHhcc----cCCCCCeEEEE
Q 024773 222 VLKQALSIPVVAVASP-------SAVRSWVNLISD----TEQWSNSVACI 260 (262)
Q Consensus 222 ~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~----~~~~~~~i~~I 260 (262)
+.+.+...|+++|.|| ...+++++.+.. ..+.+++++.+
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v 110 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVI 110 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEE
Confidence 4455679999999997 577888887632 22456666655
No 288
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=47.50 E-value=69 Score=22.30 Aligned_cols=109 Identities=7% Similarity=0.035 Sum_probs=65.1
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~----~aV~~f~~~l~~ 123 (262)
.+++||+...... ...+.+.|++.|+++... .+..+....+.. ..+|.|++--. ++.+ ++..+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLST-FEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-TCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 3678999976543 456788898888866532 233333344433 46888877532 3333 4444554
Q ss_pred cCC-CCcEEEEeChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AGT-PNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~~-~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
... ...+|+.++.... ..+.+. |.. ++..+..+.+.|.+.+...
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE------GAD-DYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH------TCC-EEECSSCCHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh------ChH-HHhhCCCCHHHHHHHHHHH
Confidence 432 4567776665433 334445 765 4677888999999888754
No 289
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=47.50 E-value=67 Score=25.27 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCC-CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccC-
Q 024773 110 SPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA- 187 (262)
Q Consensus 110 S~~aV~~f~~~l~~~~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~- 187 (262)
|+.+++...+.+...+.+ ++.+ ..|.... .+... ..++..+.....+.+ +++.+.....+|+++++....
T Consensus 86 s~~~~~~a~~~~~~~g~~~~v~~-~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 86 RADRIENIQKNIDTYGLSPRMRA-VQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEE-EESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCEEE-EeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 445555554545555544 3333 3344322 11111 034444443334555 777777666677787765543
Q ss_pred CChhhHHHHHHhCCCeeeEEeeeccccCC
Q 024773 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (262)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~i~vY~~~~~~ 216 (262)
.....+.+.|++.|.++..+.+++..+..
T Consensus 158 ~~~~~~~~~l~~~g~~i~~i~~~~~~~~~ 186 (204)
T 3njr_A 158 ESETLLTQLHARHGGQLLRIDIAQAEPLG 186 (204)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred ccHHHHHHHHHhCCCcEEEEEeecccccC
Confidence 34566778889999999999888776543
No 290
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=47.33 E-value=85 Score=23.30 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEc-cCC
Q 024773 110 SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SAK 188 (262)
Q Consensus 110 S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~-g~~ 188 (262)
|+..++...+.+...+.+++.+. .|.... .+.+. .++..+.......+.+++.+... +|+.+++.. ...
T Consensus 66 ~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 66 LDGAIEVTKQNLAKFNIKNCQII-KGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp SHHHHHHHHHHHHHTTCCSEEEE-ESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred CHHHHHHHHHHHHHcCCCcEEEE-ECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 55566655555555554444443 444433 34433 45554432225677778777776 566766655 444
Q ss_pred ChhhHHHHHHhCCCeeeEEeeecc
Q 024773 189 ASNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
....+.+.|++.|+.+..+.+...
T Consensus 136 ~~~~~~~~l~~~g~~~~~~~~~~~ 159 (183)
T 2yxd_A 136 NAAKIINEFESRGYNVDAVNVFIS 159 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cHHHHHHHHHHcCCeEEEEEeeee
Confidence 456788899999988877655443
No 291
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=47.29 E-value=50 Score=28.09 Aligned_cols=153 Identities=11% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeC-----CCchHHHHH---HhcCCCccEEE----EeCHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQG-----PDTDRLSSV---LNADTIFDWII----ITSPEA 113 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~-----~~~~~l~~~---l~~l~~~d~Ii----FTS~~a 113 (262)
.+.||++|||..... ...+++.|.+.|++|+.+-.-+..+. .+.+.+.+. +... ..+..+ +++..+
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-GRRIIARQADVRDLAS 121 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCCCHHH
Confidence 478999999988764 46799999999999876522111100 012222222 2222 122332 368888
Q ss_pred HHHHHHHHHHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEE
Q 024773 114 GSVFLEAWKEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP 184 (262)
Q Consensus 114 V~~f~~~l~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~ 184 (262)
++.+++.+.+. +.-+.-|.+.| ..+.+.+++. +.+.+...-.....++..+.+.. .+.+|+++
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~~m~~~~-~~g~Iv~i 193 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI-------LQTNLIGAWHACRAVLPSMIERG-QGGSVIFV 193 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHTC-SCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 98888766543 32234444444 2234444444 22222211112233334443322 24678887
Q ss_pred ccCCC--------------------hhhHHHHHHhCCCeeeEEe
Q 024773 185 ASAKA--------------------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 185 ~g~~~--------------------~~~L~~~L~~~G~~v~~i~ 208 (262)
.+..+ ...|..+|...|+.|..+.
T Consensus 194 sS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 237 (317)
T 3oec_A 194 SSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVN 237 (317)
T ss_dssp CCGGGSSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CcHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEe
Confidence 76432 1234556666788776554
No 292
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.02 E-value=27 Score=25.59 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 024773 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (262)
Q Consensus 46 ~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (262)
.++.|++|++|..-. .++++.+.++.+|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 568999999998864 47889999999999875
No 293
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=46.85 E-value=46 Score=27.07 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=46.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.++++|||..... ...+++.|.+.|++|+..- +... ...+.+.+.+... ....++. +++..+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTY--HSDT-TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSCH-HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEc--CCCh-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 3456899999988764 4679999999999876431 1100 0011222222111 1122221 47888999888876
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 80 ~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 80 MSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHSCCCEEECCCC
T ss_pred HHHhCCCCEEEECCc
Confidence 543 22244454555
No 294
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=46.77 E-value=21 Score=29.16 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.++.||+||||..... ...+++.|.+.|++|...
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 7789999999988764 467899999999987643
No 295
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=46.59 E-value=32 Score=27.55 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=49.6
Q ss_pred ccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCH-----HHHHHHHH
Q 024773 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 245 (262)
Q Consensus 178 g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~-----s~~~~~~~ 245 (262)
+.++++.+..+ +...+...|+.+|++|..+-. .. ..+++.+.. .+.|+|.+++. ..++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~--~v----p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV--DI----EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS--SB----CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC--CC----CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 45777776553 467778889999998855543 12 233444433 28899988874 23566666
Q ss_pred HhcccCC-CCCeEEEECC
Q 024773 246 LISDTEQ-WSNSVACIAG 262 (262)
Q Consensus 246 ~~~~~~~-~~~~i~~IGp 262 (262)
.+++... +++++++=|+
T Consensus 162 ~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHTTCGGGCEEEEEST
T ss_pred HHHhcCCCCCCeEEEECC
Confidence 6665432 3588887664
No 296
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=46.58 E-value=13 Score=28.67 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=36.0
Q ss_pred CeEEEeCCC----CChHHHHHHHHhCCCcEEEeceEEeeeCC-------------CchHHHHHHhcCCCccEEEEeCH--
Q 024773 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSP-- 111 (262)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-------------~~~~l~~~l~~l~~~d~IiFTS~-- 111 (262)
++||+.-.. .....+++.+.+ |+++..+.+......+ ..+.+.....++..+|.|||.||
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y 82 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIY 82 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECB
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCcc
Confidence 355554333 345667777654 5666555544432100 01123334445678999999985
Q ss_pred -----HHHHHHHHHHH
Q 024773 112 -----EAGSVFLEAWK 122 (262)
Q Consensus 112 -----~aV~~f~~~l~ 122 (262)
..++.|++.+.
T Consensus 83 ~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 83 WFGMSGTLKLFIDRWS 98 (184)
T ss_dssp TTBCCHHHHHHHHTHH
T ss_pred ccCCcHHHHHHHHHhH
Confidence 45667766543
No 297
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=46.50 E-value=45 Score=29.02 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=91.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 024773 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (262)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV-~~f~~~l~~~~~~~ 128 (262)
.++||++.+- .++..+.|++.| ++...+. ..+ .+.+++.+ .+.++|+++..+..-+ +.+++.+ ++
T Consensus 2 ~~kvlv~~~~--~~~~~~~l~~~~-~v~~~~~--~~~-~~~~~~~~---~~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRV--HEEILQLLAPHC-ELITNQT--DST-LTREEILR---RCRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCC--CHHHHHHHTTTC-EEECCCS--SSC-CCHHHHHH---HHTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCC--CHHHHHHHHhCC-eEEEecC--CCC-CCHHHHHH---HhCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 4689999764 356677888776 5543221 011 12233333 3478999987554333 2233322 24
Q ss_pred cEEEEe---Ch--hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHH----hhh-------------------C------
Q 024773 129 VRIGVV---GA--GTASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LPK-------------------N------ 174 (262)
Q Consensus 129 ~~i~aV---G~--~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~----l~~-------------------~------ 174 (262)
.++++. |- -..+++++. |+.+.-.|. ++++.+++. +.. +
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 454432 21 224678888 998866653 445444432 110 0
Q ss_pred -CCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCCh--------HHHHHHcCCCCEEEEeCHHH
Q 024773 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--------QTVLKQALSIPVVAVASPSA 239 (262)
Q Consensus 175 -~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~--------~~~~~~l~~~d~ivFtS~s~ 239 (262)
...|+++.+++-..-...+...|+..|++| .+|.+.+..... ..+.+.+...|+|++.-|.+
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 211 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATL---QYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLN 211 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEE---EEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCS
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEE---EEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCC
Confidence 124678888877666778888999888854 556544311100 01222234689999888743
No 298
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=46.38 E-value=96 Score=26.43 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=31.0
Q ss_pred CCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc-C-CCCEEEEeCH
Q 024773 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (262)
Q Consensus 176 ~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l-~-~~d~ivFtS~ 237 (262)
.+|.+|+++...-....+...++..|+++..+.+-.. -....+++.+.+ + +..+|+++++
T Consensus 107 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~ 168 (393)
T 1vjo_A 107 EPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETHRPAILALVHA 168 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC--CCCCHHHHHHHHhhCCceEEEEecc
Confidence 3556777776554333355666667777665554221 112233333333 2 4566777665
No 299
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=46.24 E-value=24 Score=29.06 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=55.6
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~--~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
.++|++...... ..-+.+.++++|..+....+...... ...+.+.+.+..-...|+|+.++-.....+++.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 204 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQA 204 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 457776655432 13366778888876543222221111 123445566655567999999998888888888
Q ss_pred HHHcCC---CCcEEEEeChhHH
Q 024773 121 WKEAGT---PNVRIGVVGAGTA 139 (262)
Q Consensus 121 l~~~~~---~~~~i~aVG~~Ta 139 (262)
+.+.+. +++.|+..+....
T Consensus 205 l~~~g~~vP~di~vvg~d~~~~ 226 (291)
T 3egc_A 205 LNVLGLRYGPDVEIVSFDNLPW 226 (291)
T ss_dssp HHHHTCCBTTTBEEEEESCCGG
T ss_pred HHHcCCCCCCceEEEEecCchh
Confidence 888876 3788888876543
No 300
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.19 E-value=19 Score=29.69 Aligned_cols=102 Identities=9% Similarity=0.083 Sum_probs=62.0
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 024773 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (262)
.++|.+..+.... .-+.+.++++|..+.....+... .+. +.+.+.+......|+|+.++-.....++
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALV 204 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 4578777554321 33667788888766433222111 122 2344445444578999999988888888
Q ss_pred HHHHHcCC---CCcEEEEeChhHHHHHHHhhhhcCCCCceeecC
Q 024773 119 EAWKEAGT---PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSP 159 (262)
Q Consensus 119 ~~l~~~~~---~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p 159 (262)
+.+.+.+. +++.|++.+.........- +++....+
T Consensus 205 ~al~~~g~~vP~di~vig~d~~~~~~~~~p------~lttv~~~ 242 (288)
T 3gv0_A 205 AGFEAAGVKIGEDVDIVSKQSAEFLNWIKP------QIHTVNED 242 (288)
T ss_dssp HHHHTTTCCTTTSCEEEEEESSTTHHHHCT------TSEEEECC
T ss_pred HHHHHcCCCCCCceEEEEecChHHHhccCC------CceEEecC
Confidence 88888876 4788888877654444444 56554443
No 301
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=46.07 E-value=31 Score=28.89 Aligned_cols=111 Identities=6% Similarity=0.104 Sum_probs=64.8
Q ss_pred EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeecc
Q 024773 133 VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (262)
Q Consensus 133 aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~ 212 (262)
++|=+|.+++.+++ .. ..+. ...++.+.+. . ..++||.++..-. .+.+.|.+. + ++.+++.
T Consensus 83 algiAaiNAv~~~~------~~--~~~~--~~~d~~~~~~-~-~~~~kV~vIG~~p---~l~~~l~~~-~---~v~V~d~ 143 (249)
T 3npg_A 83 TLGVAAINAVSQYY------ID--LREA--KWIDVTELIQ-Q-DEIKRIAIIGNMP---PVVRTLKEK-Y---EVYVFER 143 (249)
T ss_dssp HHHHHHHHHHHHHH------CC--CTTC--BCCCHHHHHH-T-SCCSEEEEESCCH---HHHHHHTTT-S---EEEEECC
T ss_pred HHHHHHHHHhhhhc------cc--cCCc--cccCHHHHHh-h-cCCCEEEEECCCH---HHHHHHhcc-C---CEEEEEC
Confidence 56667888887772 21 1221 1223444444 2 2457888776643 466777664 3 6778887
Q ss_pred ccCC---C-ChHHHH-HHcCCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEECC
Q 024773 213 EPVH---H-VDQTVL-KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIAG 262 (262)
Q Consensus 213 ~~~~---~-~~~~~~-~~l~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IGp 262 (262)
.+.. . .+.... +.++..|+++.|.++-+..=++.+-+.......++-+||
T Consensus 144 ~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GP 198 (249)
T 3npg_A 144 NMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGP 198 (249)
T ss_dssp SGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESG
T ss_pred CCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEec
Confidence 7642 1 111222 346799999999999776655554433222346777776
No 302
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=46.05 E-value=16 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=27.0
Q ss_pred CCCCCeEEEeCCC----------------C-ChHHHHHHHHhCCCcEEEe
Q 024773 47 SNSNPKVVVTRER----------------G-KNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 47 ~l~g~~VLitR~~----------------~-~~~~l~~~L~~~G~~v~~~ 79 (262)
++.|++||||.+. . -...+++.|.++|++|..+
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 4789999999883 3 4578999999999999764
No 303
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=45.63 E-value=66 Score=26.02 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.+.||++|||..... ...+++.|.+.|++|...
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 37 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGF 37 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467999999988654 467999999999988753
No 304
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=45.40 E-value=1.4e+02 Score=25.31 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHh--CCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAK--HRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~--~G~~v~~~ 79 (262)
..+.+++||||..... ...+.+.|.+ .|++|..+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~ 42 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL 42 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEE
Confidence 4578999999987654 4678888888 89999865
No 305
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=45.06 E-value=21 Score=31.34 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCC---CCcEEEE
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGV 133 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~---~~~~i~a 133 (262)
.+.+.+.+.|+++..+.+-+ . +... ....+.++|.|+|-|| ..++.|++.+..... .++++++
T Consensus 276 ~i~~~l~~~g~~v~~~~~~~---~-~~~~---~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~ 348 (404)
T 2ohh_A 276 AIAEGAMSEGVDVRVYCLHE---D-DRSE---IVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALV 348 (404)
T ss_dssp HHHHHHHTTTCEEEEEETTT---S-CHHH---HHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEE
T ss_pred HHHHHHHhCCCeEEEEECCC---C-CHHH---HHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEE
Confidence 34455556677665443211 1 1222 2334568999999998 478889887765333 5667766
Q ss_pred eC
Q 024773 134 VG 135 (262)
Q Consensus 134 VG 135 (262)
+|
T Consensus 349 ~~ 350 (404)
T 2ohh_A 349 FG 350 (404)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 306
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.04 E-value=70 Score=26.27 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=58.2
Q ss_pred CeEEEeCCCCCh------HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 024773 51 PKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (262)
Q Consensus 51 ~~VLitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~ 122 (262)
++|++....... .-+.+.++++|..+.....+......+ .+.+...+..-.+.|+|+..+-...-..++.+.
T Consensus 128 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 207 (305)
T 3g1w_A 128 GEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVR 207 (305)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHH
Confidence 367666543321 236667777887776554433221111 123445555556789999999888888888888
Q ss_pred HcCC-CCcEEEEeChhH--HHHHHH
Q 024773 123 EAGT-PNVRIGVVGAGT--ASIFEE 144 (262)
Q Consensus 123 ~~~~-~~~~i~aVG~~T--a~~L~~ 144 (262)
+.+. +++.|++.+... ...+..
T Consensus 208 ~~g~~~di~vig~d~~~~~~~~~~~ 232 (305)
T 3g1w_A 208 LESRAGEIQIISFDTDKGTLDLVDE 232 (305)
T ss_dssp HTTCTTTSEEEEESCCHHHHHHHHT
T ss_pred hcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 8876 478898888744 444443
No 307
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=44.95 E-value=78 Score=22.21 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC---------HHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS---------PEAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS---------~~aV~~f~~ 119 (262)
..+||+...+.. ...+...|+..|+++... .+..+....+.. ..+|.|++-- .++.+ ++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~-~~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLF-WLH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHH-HHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHH-HHH
Confidence 568998876543 456778888888765422 233333444433 4589888752 23443 344
Q ss_pred HHHHcCCCCcEEEEeCh-hHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 120 AWKEAGTPNVRIGVVGA-GTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~-~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.+.+.. .+.+++.+.. ... ..+.+. |.. ++..+..+.+.|.+.+...
T Consensus 73 ~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 73 EIKRQY-RDLPVVLFTAYADIDLAVRGIKE------GAS-DFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHHC-TTCCEEEEEEGGGHHHHHHHHHT------TCC-EEEEESCCHHHHHHHHHHH
T ss_pred HHHhhC-cCCCEEEEECCCCHHHHHHHHHc------Cch-heeeCCCCHHHHHHHHHHH
Confidence 454432 3566665543 322 233344 665 3556677888888777654
No 308
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.94 E-value=30 Score=27.97 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=45.4
Q ss_pred CCCCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 47 ~l~g~~VLitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
.+.|++|++.-... .-....+.|++.|+++..+.+.+ .+.++..+.+ .+.|.|+++=.+.. .+++
T Consensus 24 ~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l---~~ad~I~l~GG~~~-~l~~ 95 (206)
T 3l4e_A 24 NLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKL---RKNDFIYVTGGNTF-FLLQ 95 (206)
T ss_dssp CCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHH---HHSSEEEECCSCHH-HHHH
T ss_pred HcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHH---HhCCEEEECCCCHH-HHHH
Confidence 45578888764221 22568889999999877665433 2333333333 56899999887776 4566
Q ss_pred HHHHcC
Q 024773 120 AWKEAG 125 (262)
Q Consensus 120 ~l~~~~ 125 (262)
.+.+.+
T Consensus 96 ~L~~~g 101 (206)
T 3l4e_A 96 ELKRTG 101 (206)
T ss_dssp HHHHHT
T ss_pred HHHHCC
Confidence 666655
No 309
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=44.71 E-value=60 Score=27.81 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred eEEEeCCCCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHH
Q 024773 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEA 120 (262)
Q Consensus 52 ~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~f~~~ 120 (262)
-|++...+..+..+ .+..++.|++...+.+-+. ...+++...+ +.....|.|+.+-|-- + +...+.
T Consensus 37 avilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~ 113 (285)
T 3p2o_A 37 AVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN---ITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILES 113 (285)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhh
Confidence 45555444333333 3455677988876544211 1234454444 4456899999998721 1 222332
Q ss_pred HHH-cCCCCcEEEEeChhHHHHHHHhhhhcCCCCcee-ecCCCCCHHHHHHHhhhCC--CCccEEEEEcc-CCChhhHHH
Q 024773 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA-FSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEE 195 (262)
Q Consensus 121 l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~-~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~g-~~~~~~L~~ 195 (262)
+.. ...|.. ++.-...|- . |- .. +.| -|..+.++.|..+. ..|++++++.. +.....+..
T Consensus 114 I~p~KDVDg~-----~~~N~g~l~-~------g~-~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~ 178 (285)
T 3p2o_A 114 IISSKDVDGF-----HPINVGYLN-L------GL-ESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMAT 178 (285)
T ss_dssp SCGGGCTTCC-----SHHHHHHHH-T------TC-CSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred CCcccccccC-----CHhhhhhhh-c------CC-CCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHH
Confidence 221 112332 332222221 1 32 12 333 37788888777663 46889888884 545677889
Q ss_pred HHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH
Q 024773 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (262)
Q Consensus 196 ~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~ 237 (262)
.|.+.|++|+-+. ++. . .+.+.+...|+|+-+.+
T Consensus 179 lL~~~gAtVtv~h--~~t---~---~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 179 MLLNAGATVSVCH--IKT---K---DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHTTCEEEEEC--TTC---S---CHHHHHTTCSEEEECSS
T ss_pred HHHHCCCeEEEEe--CCc---h---hHHHHhhcCCEEEECCC
Confidence 9999999875432 221 1 23344578999988776
No 310
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=44.62 E-value=55 Score=26.88 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccE
Q 024773 27 PLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (262)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~ 105 (262)
+...++-|++.. ..+++||||..... ...+++.|.+.|++|...-. ......+.+...+...+ .+.
T Consensus 12 ~~~~~n~~~~~m---------~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~---~~~~~~~~~~~~~~~~~-~~~ 78 (272)
T 4e3z_A 12 DLGTENLYFQSM---------SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYA---ANREAADAVVAAITESG-GEA 78 (272)
T ss_dssp ---------------------CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTT-CEE
T ss_pred CCCChhhhhhhc---------cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC---CChhHHHHHHHHHHhcC-CcE
Confidence 445556666551 24789999988764 46799999999998753211 00001122222332221 222
Q ss_pred EE----EeCHHHHHHHHHHHHHc-CCCCcEEEEeC
Q 024773 106 II----ITSPEAGSVFLEAWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 106 Ii----FTS~~aV~~f~~~l~~~-~~~~~~i~aVG 135 (262)
.+ +++...++.+++.+.+. +.-+.-|.+.|
T Consensus 79 ~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg 113 (272)
T 4e3z_A 79 VAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAG 113 (272)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 22 36888888888876543 22234444444
No 311
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=44.61 E-value=31 Score=26.61 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=55.5
Q ss_pred CChHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 60 GKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 60 ~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~--l-~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
.+..++.+.|++.| +.+..+. . .+...+...+.. + ..+|.++..+...-+.|...++..+.+.-.+++||
T Consensus 108 ~~~~~~l~~l~~~g~~~~~i~t---~---~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iG 181 (234)
T 3ddh_A 108 PGVKETLKTLKETGKYKLVVAT---K---GDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMVG 181 (234)
T ss_dssp TTHHHHHHHHHHHCCCEEEEEE---E---SCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ccHHHHHHHHHhCCCeEEEEEe---C---CchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEEC
Confidence 45677788888888 7665432 1 112222223322 2 35777777666666666666666677666788898
Q ss_pred hhH---HHHHHHhhhhcCCCCceeecCC
Q 024773 136 AGT---ASIFEEVIQSSKCSLDVAFSPS 160 (262)
Q Consensus 136 ~~T---a~~L~~~~~~~~~G~~~~~~p~ 160 (262)
..- .+.++.. |+.+..++.
T Consensus 182 D~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 182 NSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp SCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCcHHHhHHHHHC------CCeEEEecC
Confidence 773 5678888 888776643
No 312
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=44.53 E-value=41 Score=28.67 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEece-------------------EEeee--CCCchHHHHHHhcCCCc
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPL-------------------IQHAQ--GPDTDRLSSVLNADTIF 103 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~-------------------~~~~~--~~~~~~l~~~l~~l~~~ 103 (262)
.++.+++||||..... ...+.+.|.+.|++|..+-- .++.. ..|.+.+.+.+.. .+.
T Consensus 6 ~~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~-~~~ 84 (346)
T 3i6i_A 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE-HEI 84 (346)
T ss_dssp -----CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH-TTC
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh-CCC
Confidence 3456789999988653 56788889899988765421 11111 1233445555532 268
Q ss_pred cEEEEeCHH----HHHHHHHHHHHcC
Q 024773 104 DWIIITSPE----AGSVFLEAWKEAG 125 (262)
Q Consensus 104 d~IiFTS~~----aV~~f~~~l~~~~ 125 (262)
|.||.+-.. +...+++.+.+.+
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred CEEEECCchhhHHHHHHHHHHHHHcC
Confidence 888877653 4566666666654
No 313
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=44.48 E-value=23 Score=29.71 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=44.4
Q ss_pred CCCCCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCc
Q 024773 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103 (262)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~ 103 (262)
+.++|+++..+. .+.||++|||..... ...+++.|.+.|++|+..-.- . ....+.+...+......
T Consensus 10 ~~~~~~~n~~~~----------~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~--~-~~~~~~~~~~~~~~~~~ 76 (281)
T 3v2h_A 10 GVDLGTENLYFQ----------SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG--A-PDEIRTVTDEVAGLSSG 76 (281)
T ss_dssp ----------------------CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC--C-HHHHHHHHHHHHTTCSS
T ss_pred cccccccchhhh----------ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--C-hHHHHHHHHHHhhccCC
Confidence 445665555443 356899999988654 467999999999987643110 0 00112222233222222
Q ss_pred cEEE----EeCHHHHHHHHHHHHHc
Q 024773 104 DWII----ITSPEAGSVFLEAWKEA 124 (262)
Q Consensus 104 d~Ii----FTS~~aV~~f~~~l~~~ 124 (262)
...+ +++..+++.+++.+.+.
T Consensus 77 ~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 77 TVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3332 46788898888876553
No 314
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=44.46 E-value=33 Score=27.56 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=44.9
Q ss_pred EEEEEccCCC------h----hhHHHHHHhC--CCeeeEEeeeccccCCCCh--------------------------HH
Q 024773 180 TVLYPASAKA------S----NEIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QT 221 (262)
Q Consensus 180 ~vL~~~g~~~------~----~~L~~~L~~~--G~~v~~i~vY~~~~~~~~~--------------------------~~ 221 (262)
++|++.|.-. . +.+.+.|++. |.+|+.+.+|+...+.... .+
T Consensus 6 kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 3p0r_A 6 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADK 85 (211)
T ss_dssp EEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHH
Confidence 6676666533 1 3456666665 8899999998754332211 11
Q ss_pred HHHHcCCCCEEEEeC-------HHHHHHHHHHhc
Q 024773 222 VLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (262)
Q Consensus 222 ~~~~l~~~d~ivFtS-------~s~~~~~~~~~~ 248 (262)
+.+.+...|.|||.+ |...+.|++.+-
T Consensus 86 ~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (211)
T 3p0r_A 86 YLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLN 119 (211)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHh
Confidence 223345899999998 578999999864
No 315
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=44.34 E-value=1.2e+02 Score=25.19 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=50.3
Q ss_pred CccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCH-----HHHHHHH
Q 024773 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWV 244 (262)
Q Consensus 177 ~g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~-----s~~~~~~ 244 (262)
.+.++|+.+..+ +...+...|+.+|++|..+-. ..+. +++.+.. .+.|+|.+++. ..++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~--~vp~----e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGR--DVPA----EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEE--ECCS----HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCH----HHHHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 356788777643 466778889999998866555 2332 3333333 28899998873 3355667
Q ss_pred HHhcccCCCCCeEEEECC
Q 024773 245 NLISDTEQWSNSVACIAG 262 (262)
Q Consensus 245 ~~~~~~~~~~~~i~~IGp 262 (262)
+.+++.. .+++|++=|+
T Consensus 196 ~~l~~~~-~~~~v~vGG~ 212 (258)
T 2i2x_B 196 DMLLENG-IKIPFACGGG 212 (258)
T ss_dssp HHHHTTT-CCCCEEEEST
T ss_pred HHHHhcC-CCCcEEEECc
Confidence 6666543 3477777663
No 316
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=44.31 E-value=47 Score=27.66 Aligned_cols=152 Identities=8% Similarity=0.081 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCc-cEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIF-DWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~-d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|+..- +.. ...+++.+.+... +.. .++. +|+..+++.+++.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 104 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITG--RRP--DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAA 104 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4678999999988754 4678999999999876531 110 0111222222111 111 1221 4788899988887
Q ss_pred HHHc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-
Q 024773 121 WKEA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA- 189 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~- 189 (262)
+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.....++..+.+....+.+++++.+-.+
T Consensus 105 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 177 (281)
T 4dry_A 105 VRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGI-------VAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ 177 (281)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC
Confidence 6543 322344444442 234444444 2222211111233444444443222468888876432
Q ss_pred -------------------hhhHHHHHHhCCCeeeEEe
Q 024773 190 -------------------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 190 -------------------~~~L~~~L~~~G~~v~~i~ 208 (262)
...|..++...|+.|..+.
T Consensus 178 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~ 215 (281)
T 4dry_A 178 TPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQID 215 (281)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEE
Confidence 1244556666777776554
No 317
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=44.23 E-value=1.4e+02 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.+.+++||||..... ...+.+.|.+.|++|..+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 55 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGL 55 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 456899999987653 467889999999988765
No 318
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=44.22 E-value=1.1e+02 Score=26.11 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=29.4
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcC--CCCEEEEeCH
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASP 237 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~--~~d~ivFtS~ 237 (262)
+|.+|+++...-......+.++..|+++..+.+-.. -....+++.+.+. +..+|+++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~ 152 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD--RPFSLETLARAIELHQPKCLFLTHG 152 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--SCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC--CCCCHHHHHHHHHhCCCCEEEEECC
Confidence 456777776655443223445666777665554221 1122333433332 4566666655
No 319
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=44.13 E-value=83 Score=22.29 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=63.0
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~ 123 (262)
.+.+||+...... ...+...|+..|++|... .+.++....+.. ..+|.|+.-- .++.+ ++..+.+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~lp~~~g~~-~~~~lr~ 72 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------ASGEEALQQIYK-NLPDALICDVLLPGIDGYT-LCKRVRQ 72 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHc
Confidence 3568999876543 456778888889876422 233333334433 5689888752 23444 3344444
Q ss_pred cC-CCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AG-TPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~-~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. ..+.+++.+ |... .....+. |.. ++..+..+.+.|...+...
T Consensus 73 ~~~~~~~pii~~t~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~L~~~i~~~ 121 (136)
T 3t6k_A 73 HPLTKTLPILMLTAQGDISAKIAGFEA------GAN-DYLAKPFEPQELVYRVKNI 121 (136)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHH------TCS-EEEETTCCHHHHHHHHHHH
T ss_pred CCCcCCccEEEEecCCCHHHHHHHHhc------Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 32 235555544 4332 2334455 765 4677888999998877653
No 320
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=43.96 E-value=23 Score=29.46 Aligned_cols=88 Identities=15% Similarity=-0.013 Sum_probs=47.7
Q ss_pred CCCCccchhccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE
Q 024773 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI 106 (262)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~I 106 (262)
+..++.||+..- ....+.||++|||..... ...+++.|.+.|++|...-. ......+.+...+...+ .+..
T Consensus 13 ~~~~~~~~~~mm----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~---~~~~~~~~~~~~l~~~~-~~~~ 84 (271)
T 3v2g_A 13 LGTENLYFQSMM----TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV---NAAERAQAVVSEIEQAG-GRAV 84 (271)
T ss_dssp -------CHHHH----TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTT-CCEE
T ss_pred ccccccchhhhc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHHHhcC-CcEE
Confidence 344566776632 124688999999988754 46799999999998764311 00001122223332222 1222
Q ss_pred E----EeCHHHHHHHHHHHHH
Q 024773 107 I----ITSPEAGSVFLEAWKE 123 (262)
Q Consensus 107 i----FTS~~aV~~f~~~l~~ 123 (262)
. +++..+++.+++.+.+
T Consensus 85 ~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 85 AIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp EEECCTTCHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHH
Confidence 2 4788888888776644
No 321
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=43.94 E-value=63 Score=27.94 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=87.8
Q ss_pred CeEEEeCCCCChHHHHH----HHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH------HHHH
Q 024773 51 PKVVVTRERGKNGKLIK----ALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA------GSVF 117 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~----~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a------V~~f 117 (262)
.-|++...+..+..+.+ ..++.|++...+-+=+ ....+++...+ +.....|.|+.--|-- -+..
T Consensus 38 LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~---~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i 114 (301)
T 1a4i_A 38 LAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPR---TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEV 114 (301)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT---TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHH
Confidence 34555544444444443 4566798887653311 11223444444 3457899999876432 1222
Q ss_pred HHHHHHc-CCCCcEEEEeChhHHHHHHHhhhhcCCCC-ceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccCC-Chhh
Q 024773 118 LEAWKEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNE 192 (262)
Q Consensus 118 ~~~l~~~-~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~-~~~~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~g~~-~~~~ 192 (262)
.+.+... ..|... +.-...|- . |- ...+.| -|.+++++.|.... ..|++++++.... ....
T Consensus 115 ~~~I~p~KDVDG~h-----p~N~G~l~-~------g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p 180 (301)
T 1a4i_A 115 INAIAPEKDVDGLT-----SINAGRLA-R------GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAP 180 (301)
T ss_dssp HHTSCGGGBTTCCS-----HHHHHHHH-T------TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHH
T ss_pred HhccCCCCCccCCC-----hhhHHHHh-c------CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHH
Confidence 2222111 123322 22222222 1 32 122344 37888888777654 3688888887774 4667
Q ss_pred HHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHH
Q 024773 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 193 L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s 238 (262)
+...|...|++|+-+. .+ . .++.+.+...|+|+-+.+.
T Consensus 181 ~A~lL~~~gAtVtv~h--s~---t---~~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 181 MHDLLLWNNATVTTCH--SK---T---AHLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp HHHHHHHTTCEEEEEC--TT---C---SSHHHHHTTCSEEEECCCC
T ss_pred HHHHHHhCCCeEEEEE--CC---c---ccHHHHhccCCEEEECCCC
Confidence 8888999999876442 11 1 1244445788988877665
No 322
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=43.86 E-value=43 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHcCCCCEEEEeCH-------HHHHHHHHHhccc---CCCCCeEEEEC
Q 024773 222 VLKQALSIPVVAVASP-------SAVRSWVNLISDT---EQWSNSVACIA 261 (262)
Q Consensus 222 ~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~---~~~~~~i~~IG 261 (262)
+.+.+...|.|||.|| ...++|++.+... .+.+.+++.|+
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~ 115 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQT 115 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEE
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEE
Confidence 4445568999999886 4678888887542 24566666553
No 323
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=43.82 E-value=77 Score=28.31 Aligned_cols=34 Identities=6% Similarity=-0.187 Sum_probs=27.9
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 024773 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (262)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (262)
.+.|++|+|.....-...+...+++.|++++.+.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d 65 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLD 65 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 4578999999876557789999999999987654
No 324
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.77 E-value=33 Score=27.71 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=52.6
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHhC-CCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024773 51 PKVVVTRERGKN-------GKLIKALAKH-RIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~-G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
++|++....... .-+.+.++++ |.++.... ......+ .+.+...+..-.+.|+|+.++-......++.
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 205 (276)
T 3ksm_A 128 RNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAP--YAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVA 205 (276)
T ss_dssp EEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECC--BCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHH
T ss_pred ceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEe--cCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHH
Confidence 577777654321 2355666666 66554211 1111000 1234555555567899999998888888888
Q ss_pred HHHcCC-CCcEEEEeChhH
Q 024773 121 WKEAGT-PNVRIGVVGAGT 138 (262)
Q Consensus 121 l~~~~~-~~~~i~aVG~~T 138 (262)
+.+.+. +++.|+..+...
T Consensus 206 l~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 206 IRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp HHHTTCTTSSEEEEESCCH
T ss_pred HHHcCCCCCeEEEEeCCCH
Confidence 888886 578888888643
No 325
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.43 E-value=27 Score=28.66 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=50.9
Q ss_pred eEEEeCCCCC-------hHHHHHHHHhC-CCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 52 KVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 52 ~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
+|++..+... ..-+.+.++++ |.++... + ....+. +.+...+..-.+.|+|+.++-...-..++
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 212 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDS--V--SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLE 212 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEE--E--ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeee--c--cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHH
Confidence 7776654322 13455667777 7655432 1 111121 23445554456789999999888888888
Q ss_pred HHHHcCCCCcEEEEeChh
Q 024773 120 AWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~ 137 (262)
.+.+.+..++.|++.+..
T Consensus 213 al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 213 ALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp HHHHTTCCCCEEEEEECC
T ss_pred HHHhCCCCCeEEEEecCC
Confidence 888888766777777653
No 326
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=43.29 E-value=81 Score=21.93 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC------CCccEEEEe----CHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD------TIFDWIIIT----SPEAGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l------~~~d~IiFT----S~~aV~~f~ 118 (262)
+++||+...+.. ...+...|+..|+... +....+..+....+... ..+|.|+.- ..++.+ ++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE------VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-VL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE------EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-HH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce------EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-HH
Confidence 678999876543 4568888988887321 11112334444445331 468988874 223443 44
Q ss_pred HHHHHcC-CCCcEEEEe-Chh---HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 119 EAWKEAG-TPNVRIGVV-GAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 119 ~~l~~~~-~~~~~i~aV-G~~---Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+.+.+.. ..+++++.+ +.. ....+.+. |.. ++.++..+.+.|...+..
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 127 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL------HVN-CYITKSANLSQLFQIVKG 127 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHh------chh-heecCCCCHHHHHHHHHH
Confidence 4455432 135566554 332 23333445 665 366777888888877654
No 327
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}
Probab=43.15 E-value=27 Score=33.09 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEee-----eCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~-----~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
..+.||++|||....+ ...+++.|.+.|++|+..-.-... .....+.+...+......-..-+++...++.+++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIE 94 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Confidence 4578999999988764 467999999999999865321000 0011223333343333333445677777777766
Q ss_pred HHHHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-
Q 024773 120 AWKEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA- 189 (262)
Q Consensus 120 ~l~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~- 189 (262)
.+.+. +.-+.-|.+.| ..+.+.+++. +.+.+...-.....++..|.+ ..+.+|+.+.+..+
T Consensus 95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~-------~~vNl~g~~~l~~~~~p~m~~--~~~g~IV~isS~a~~ 165 (613)
T 3oml_A 95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLV-------NDVHLKGSFKCTQAAFPYMKK--QNYGRIIMTSSNSGI 165 (613)
T ss_dssp ----------CEECCCCCCCCCCSTTCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT--TTCEEEEEECCHHHH
T ss_pred HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--cCCCEEEEECCHHHc
Confidence 54432 21122222222 2344444444 222222111122333333333 23468888877321
Q ss_pred -------------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 -------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 -------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..++...|+.|..+.-
T Consensus 166 ~~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~P 204 (613)
T 3oml_A 166 YGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVP 204 (613)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEEC
Confidence 23456677777888776654
No 328
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=42.78 E-value=28 Score=24.39 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 024773 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (262)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (262)
.++.|++|++|.... .++++.+.++.+|+.|.
T Consensus 6 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 6 EALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 679999999997754 56889999999999876
No 329
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=42.67 E-value=22 Score=27.66 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHhcCCCccEEEEeCHH
Q 024773 94 SSVLNADTIFDWIIITSPE 112 (262)
Q Consensus 94 ~~~l~~l~~~d~IiFTS~~ 112 (262)
......+..+|.|||.||.
T Consensus 76 ~~~~~~l~~aD~iI~~sP~ 94 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVTPQ 94 (191)
T ss_dssp HHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEece
Confidence 3444456778999998863
No 330
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=42.66 E-value=24 Score=30.21 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (262)
.|.+|+++.+.-....+...++..|+++..+|+-. ....+.+.+++.+++-.+..+|++++++ + ++.+.+.+
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 172 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVA 172 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHH
Confidence 47789999876433347777888999998887632 1113556677777433467899998764 2 45555555
Q ss_pred HHc
Q 024773 122 KEA 124 (262)
Q Consensus 122 ~~~ 124 (262)
.++
T Consensus 173 ~~~ 175 (386)
T 2dr1_A 173 KEH 175 (386)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 331
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=42.66 E-value=51 Score=27.11 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-Cc----hHHHHHHhcCCCccE--EEEeCHHHHHHHHHHHHHcCCC--CcEEEE
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDW--IIITSPEAGSVFLEAWKEAGTP--NVRIGV 133 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~~----~~l~~~l~~l~~~d~--IiFTS~~aV~~f~~~l~~~~~~--~~~i~a 133 (262)
.-+.+.|+++|+.- ..+....... +. +.+...+..-.+.++ |+..+-...-..++.+.+.+.. ++.|+.
T Consensus 153 ~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 153 TGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEE
Confidence 34667788877531 1122222211 11 234445544467887 5555655666677778888764 677777
Q ss_pred eChhH
Q 024773 134 VGAGT 138 (262)
Q Consensus 134 VG~~T 138 (262)
.+...
T Consensus 231 ~D~~~ 235 (306)
T 8abp_A 231 INGVD 235 (306)
T ss_dssp ESSGG
T ss_pred eCcHH
Confidence 76654
No 332
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=42.56 E-value=33 Score=28.97 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=40.4
Q ss_pred cEEEEEccC---CChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeC-------HHHHHHHHHHhc
Q 024773 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (262)
Q Consensus 179 ~~vL~~~g~---~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS-------~s~~~~~~~~~~ 248 (262)
+++|++.|. .+...|.+.|++.|+.|+.+...+- + ...+ .+.++|+||+.. +...+.+.+.++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~-~--~~~~----~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG-L--DVGE----LLAKQDLVILSDYPAERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC-B--CSSH----HHHTCSEEEEESCCGGGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc-c--cChh----HHhcCCEEEEcCCccccCCHHHHHHHHHHHH
Confidence 588888764 4677899999999999877654321 1 1112 245899999974 344455555443
No 333
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=42.48 E-value=1.1e+02 Score=23.03 Aligned_cols=37 Identities=5% Similarity=-0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeec
Q 024773 112 EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (262)
Q Consensus 112 ~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~ 158 (262)
..+-.+...+.+. +.++++-| .|++.|++. |+.+..+
T Consensus 37 ~~l~~~a~~l~~l---Gf~i~AT~-GTa~~L~~~------Gi~v~~v 73 (143)
T 2yvq_A 37 PRFLGVAEQLHNE---GFKLFATE-ATSDWLNAN------NVPATPV 73 (143)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEH-HHHHHHHHT------TCCCEEE
T ss_pred HHHHHHHHHHHHC---CCEEEECc-hHHHHHHHc------CCeEEEE
Confidence 3455566666554 67899998 589999999 9987654
No 334
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=42.27 E-value=51 Score=28.32 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=88.7
Q ss_pred eEEEeCCCCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHHH
Q 024773 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEA 120 (262)
Q Consensus 52 ~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~a--V--~~f~~~ 120 (262)
-|++...+..+..+ .+..++.|++...+.+-+. ...+++...+ +.....|.|+..-|-- + +...+.
T Consensus 39 avilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~ 115 (286)
T 4a5o_A 39 AVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAE---TSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLER 115 (286)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTT---CCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhh
Confidence 45555444333333 3456678998876544221 1234444443 4456899999988731 1 122222
Q ss_pred HHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEc-cCCChhhHHHHH
Q 024773 121 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGL 197 (262)
Q Consensus 121 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~-g~~~~~~L~~~L 197 (262)
+.. ...+=.+++.-...|- . |-. .+.| -|..+.++.|..+. ..|++++++. |+.....+...|
T Consensus 116 I~p----~KDVDG~~~~N~g~l~-~------g~~-~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL 181 (286)
T 4a5o_A 116 IHP----DKDVDGFHPYNIGRLA-Q------RMP-LLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181 (286)
T ss_dssp SCG----GGCTTCCSHHHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHH
T ss_pred CCc----ccccccCChhhhHHHh-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHH
Confidence 211 1111122333222231 2 422 2444 47888888877663 4688988888 454667789999
Q ss_pred HhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH
Q 024773 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (262)
Q Consensus 198 ~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~ 237 (262)
.+.|++|+-+ +... .. +.+.+...|+|+-+.+
T Consensus 182 ~~~gAtVtv~--hs~T---~~---L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 182 LLGGCTVTVT--HRFT---RD---LADHVSRADLVVVAAG 213 (286)
T ss_dssp HHTTCEEEEE--CTTC---SC---HHHHHHTCSEEEECCC
T ss_pred HHCCCeEEEE--eCCC---cC---HHHHhccCCEEEECCC
Confidence 9999988544 3211 11 2333458898888776
No 335
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=42.13 E-value=34 Score=29.75 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=39.4
Q ss_pred ccEEEEeC---------HHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH-hhhhcCCCCceeec----CC-CCC---H
Q 024773 103 FDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-VIQSSKCSLDVAFS----PS-KAT---G 164 (262)
Q Consensus 103 ~d~IiFTS---------~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~----p~-~~t---~ 164 (262)
..+|+||| .+-++...+.+.+ ..+..+++||.+..+.+++ + |..+... .. .++ .
T Consensus 105 ~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~~~------~~~i~~~~~~~~~~~p~~~~a 176 (311)
T 2xok_G 105 ELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLRTH------PNNIKLSINGIGKDAPTFQES 176 (311)
T ss_dssp EEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHTTS------TTTEEEEEESCTTSCCCHHHH
T ss_pred eEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHHhc------CCCeEEEecccCCCCCCHHHH
Confidence 45999999 6666665543332 1222399999999999997 6 7655321 12 333 4
Q ss_pred HHHHHHhhh
Q 024773 165 KILASELPK 173 (262)
Q Consensus 165 e~L~~~l~~ 173 (262)
..+++.+.+
T Consensus 177 ~~i~~~i~~ 185 (311)
T 2xok_G 177 ALIADKLLS 185 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666554
No 336
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=41.94 E-value=49 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=25.8
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEE
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCL 77 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~ 77 (262)
..+.|+++||+............|.+.|+ ++.
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~ 182 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVKEIS 182 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCCEEE
Confidence 56789999999886556778889999998 454
No 337
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=41.90 E-value=89 Score=22.01 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC------HHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS------PEAGSVFLEAWK 122 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS------~~aV~~f~~~l~ 122 (262)
..+||+...... ...+...|+..|+++.... +.++....+ .-..+|.|++-- .++.+ ++..+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~~~g~~-~~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA--------SAESFMRQQ-ISDDAIGMIIEAHLEDKKDSGIE-LLETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--------SHHHHTTSC-CCTTEEEEEEETTGGGBTTHHHH-HHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--------CHHHHHHHH-hccCCCEEEEeCcCCCCCccHHH-HHHHHH
Confidence 468999876543 4567788888887655321 222211122 224588777743 34444 344455
Q ss_pred HcCCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 123 EAGTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 123 ~~~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
+.. .+.+|+.+ |.... ..+.+. |.. ++..+..+.+.|...+...
T Consensus 76 ~~~-~~~~ii~~s~~~~~~~~~~~~~~------ga~-~~l~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 76 KRG-FHLPTIVMASSSDIPTAVRAMRA------SAA-DFIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp HTT-CCCCEEEEESSCCHHHHHHHHHT------TCS-EEEESSBCHHHHHHHHHHH
T ss_pred hCC-CCCCEEEEEcCCCHHHHHHHHHc------ChH-HheeCCCCHHHHHHHHHHH
Confidence 543 45555554 43333 333445 765 4667778889998877643
No 338
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=41.85 E-value=1.3e+02 Score=25.49 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=50.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeCH----------HHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSP----------EAGSV 116 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~l~~~d~IiFTS~----------~aV~~ 116 (262)
.|.+|++..+.- ..+...++..|+++..+|+-.-. ...+.+.+++.+.+ .+...|+++++ .-++.
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECCCCCCCcccCHHHHHH
Confidence 477899887754 34667788899999999885211 11356677777732 46788888887 45666
Q ss_pred HHHHHHHcC
Q 024773 117 FLEAWKEAG 125 (262)
Q Consensus 117 f~~~l~~~~ 125 (262)
+.+.+.+++
T Consensus 185 i~~~~~~~~ 193 (391)
T 3dzz_A 185 IAELCAKHQ 193 (391)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 666666543
No 339
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=41.71 E-value=53 Score=26.65 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=56.3
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
.++|.+...... ..-+.+.++++|..+...- +. ...+. +.+.+.+..-...|+|+.++-.....+++.
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 194 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YL--GPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGA 194 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CC--SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-cc--CCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHH
Confidence 456777765432 2346677888888776432 11 11121 234555555567999999998888888888
Q ss_pred HHHcCC---CCcEEEEeChhH
Q 024773 121 WKEAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 121 l~~~~~---~~~~i~aVG~~T 138 (262)
+.+.+. +++.|+..+..-
T Consensus 195 l~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 195 ARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHTCCTTTTCEEEEESCCH
T ss_pred HHHcCCCCCCeeEEEEECCch
Confidence 888876 478888888654
No 340
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=41.46 E-value=33 Score=29.38 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=84.2
Q ss_pred eEEEeCCCCChHHHH----HHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCH--HHH--HHHHHH
Q 024773 52 KVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSP--EAG--SVFLEA 120 (262)
Q Consensus 52 ~VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~--~aV--~~f~~~ 120 (262)
-|++...+..+..+. +..++.|+ ...+-+-+ ....+++...+ +.....|.|+.--| ..+ +...+.
T Consensus 31 avilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~---~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~ 106 (276)
T 3ngx_A 31 KLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYD---DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRN 106 (276)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEES---SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCC---CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhh
Confidence 344444443333333 34456788 55432211 11234444444 44578999998776 222 222222
Q ss_pred HHH-cCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc-CCChhhHHHHHH
Q 024773 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS-AKASNEIEEGLS 198 (262)
Q Consensus 121 l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g-~~~~~~L~~~L~ 198 (262)
+.. ...|... +.-...|- . |- ..+.| -|..+.++.|..+...|++++++.. +.....+...|.
T Consensus 107 I~p~KDVDG~~-----p~n~G~l~-~------g~-~~~~P--cTp~gv~~lL~~~~l~Gk~vvVvG~s~iVG~plA~lL~ 171 (276)
T 3ngx_A 107 IPYYKDVDALS-----PYNQGLIA-L------NR-EFLVP--ATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMMLL 171 (276)
T ss_dssp SCGGGBTTCCS-----HHHHHHHH-T------TC-CSSCC--HHHHHHHHHHHHHTCCSCEEEEECCCTTTHHHHHHHHH
T ss_pred CCCCCcccCCC-----ccchhhhh-c------CC-CCCCC--CcHHHHHHHHHHhCcCCCEEEEEcCChHHHHHHHHHHH
Confidence 211 1123322 22222222 2 42 22444 4788888877766567889988885 445667888999
Q ss_pred hCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHH
Q 024773 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (262)
Q Consensus 199 ~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s 238 (262)
+.|++|+-+ +++ ... +.+.+...|+|+-+.+.
T Consensus 172 ~~gAtVtv~--~~~---t~~---L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 172 NRNYTVSVC--HSK---TKD---IGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp HTTCEEEEE--CTT---CSC---HHHHHHHSSEEEECSSC
T ss_pred HCCCeEEEE--eCC---ccc---HHHhhccCCEEEECCCC
Confidence 999987533 222 112 22334477888877654
No 341
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=41.33 E-value=41 Score=27.93 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHH-----HhcCCCccEEEEeCHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSV-----LNADTIFDWIIITSPEAGS 115 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~-----l~~l~~~d~IiFTS~~aV~ 115 (262)
.++|.+..+... ..-+.+.++++|..+....++......+ .+.+.+. +..-...|+|+.++-...-
T Consensus 131 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~ 210 (303)
T 3kke_A 131 HSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAV 210 (303)
T ss_dssp CCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHH
T ss_pred CCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHH
Confidence 346666544322 2335667888887654322222211111 1234444 4434568999988888777
Q ss_pred HHHHHHHHcCC---CCcEEEEeChhHH
Q 024773 116 VFLEAWKEAGT---PNVRIGVVGAGTA 139 (262)
Q Consensus 116 ~f~~~l~~~~~---~~~~i~aVG~~Ta 139 (262)
..++.+.+.+. +++.|+..+....
T Consensus 211 g~~~al~~~G~~vP~di~vig~D~~~~ 237 (303)
T 3kke_A 211 GALSTALRLGLRVPEDLSIVGINTTWV 237 (303)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEESCCHH
T ss_pred HHHHHHHHcCCCCCCceEEEEEcChhH
Confidence 77788888775 3778888876543
No 342
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=41.13 E-value=44 Score=27.97 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=65.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeC---CC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG---PD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~---~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~ 123 (262)
.+++|.+... ...+.+.|++. +++..+ +..|. .+ .+..+..+ +...|+++.|...=+..=+..+-+
T Consensus 115 ~~~kV~vIG~---~p~l~~~l~~~-~~v~V~---d~~p~~~~~~~~~~~~e~~~--l~~~D~v~iTGsTlvN~Ti~~lL~ 185 (249)
T 3npg_A 115 EIKRIAIIGN---MPPVVRTLKEK-YEVYVF---ERNMKLWDRDTYSDTLEYHI--LPEVDGIIASASCIVNGTLDMILD 185 (249)
T ss_dssp CCSEEEEESC---CHHHHHHHTTT-SEEEEE---CCSGGGCCSSEECGGGHHHH--GGGCSEEEEETTHHHHTCHHHHHH
T ss_pred CCCEEEEECC---CHHHHHHHhcc-CCEEEE---ECCCcccCCCCCChhHHHhh--hccCCEEEEEeeeeccCCHHHHHH
Confidence 4589999844 45688888776 554433 33332 11 11122122 578999999999988766666555
Q ss_pred cCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+..+...++.+||+|. .+.+.|.- .|++..---..-+.+.+++.+.+
T Consensus 186 ~~~~~~~vvl~GPS~~-~~P~~~~~--~Gv~~l~g~~v~d~~~~l~~i~~ 232 (249)
T 3npg_A 186 RAKKAKLIVITGPTGQ-LLPEFLKG--TKVTHLASMKVTNIEKALVKLKL 232 (249)
T ss_dssp HCSSCSEEEEESGGGC-SCGGGGTT--SSCCEEEEEEESCHHHHHHHHHH
T ss_pred hCcccCeEEEEecCch-hhHHHHhh--CCccEEEEEEecCHHHHHHHHHc
Confidence 5444557899999765 44433210 16654221122466777766643
No 343
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=40.98 E-value=47 Score=25.65 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=37.6
Q ss_pred CeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceE---EeeeCCCchHHHHHHhcCCCccEEEEeC
Q 024773 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLI---QHAQGPDTDRLSSVLNADTIFDWIIITS 110 (262)
Q Consensus 51 ~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~---~~~~~~~~~~l~~~l~~l~~~d~IiFTS 110 (262)
|+||||..... ...+.+.|. .|++|..+--- -...+.+.+.+++.+...+..|.||...
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 48999988754 467888888 89988754211 0112234455666665556688888764
No 344
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=40.66 E-value=23 Score=27.77 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=38.8
Q ss_pred hHHHHHHhCCCeeeEEeeeccccCC-------------CChHHHHHHcCCCCEEEEeCH-------HHHHHHHHHhccc-
Q 024773 192 EIEEGLSNRGFEVVRLNTYTTEPVH-------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDT- 250 (262)
Q Consensus 192 ~L~~~L~~~G~~v~~i~vY~~~~~~-------------~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~~~~~~- 250 (262)
.+.+.|++.|++|+.+.+++. .+. ....+ .+.+...|.|+|.|| ..++.|++.+...
T Consensus 23 ~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~ 100 (199)
T 2zki_A 23 EIGKGAEEAGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILW 100 (199)
T ss_dssp HHHHHHHHHSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHhCCCEEEEEehhHh-CChhhhhccCCCccccccccc-HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcc
Confidence 345566667888877777665 110 00101 233457899999886 5778888876321
Q ss_pred ---CCCCCeEEEE
Q 024773 251 ---EQWSNSVACI 260 (262)
Q Consensus 251 ---~~~~~~i~~I 260 (262)
.+.+.+++++
T Consensus 101 ~~~~l~gK~~~~~ 113 (199)
T 2zki_A 101 KDNVLYGKPVTFF 113 (199)
T ss_dssp HTTSSTTCEEEEE
T ss_pred cccccCCCEEEEE
Confidence 2445566554
No 345
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=40.66 E-value=1.4e+02 Score=25.32 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=28.3
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc-C-CCCEEEEeCH
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-L-SIPVVAVASP 237 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l-~-~~d~ivFtS~ 237 (262)
+|.+|+++............++..|+.+..+.+-.. -....+++.+.+ + +..+|+++++
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~ 153 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIHKPSVLFLTQG 153 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhccCCcEEEEEcc
Confidence 456777766544332233344556776665554211 112233333333 2 4566666654
No 346
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=40.57 E-value=15 Score=29.46 Aligned_cols=53 Identities=11% Similarity=-0.047 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~ 122 (262)
.+.+.+++.|.+|..+-+.+ ..+ +.+..+.+..+|.|||.+| ...+.|++.+.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d---~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYD---VKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCC---HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCc---ccc---HHHHHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 34555666688888776654 123 3334445577999999985 56677776554
No 347
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.51 E-value=23 Score=29.39 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=42.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChhH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG~~T 138 (262)
+.+.|+++|..+....++......+ .+.+.+.+......|+|+.++-..+-..++.+.+.+. +++.|+..+...
T Consensus 148 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 148 YVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLP 226 (294)
T ss_dssp HHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSC
T ss_pred HHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCcc
Confidence 5566777776654222222211111 1234455544457888888887777777777777765 367777777543
No 348
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=40.41 E-value=11 Score=30.03 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHhCC--CcEEEeceE--Eee-eCCCc--------------------------hHHHHHHhcCCCccEEEEeCH
Q 024773 63 GKLIKALAKHR--IDCLELPLI--QHA-QGPDT--------------------------DRLSSVLNADTIFDWIIITSP 111 (262)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~P~~--~~~-~~~~~--------------------------~~l~~~l~~l~~~d~IiFTS~ 111 (262)
+.+.+.+++.| .+|..+.++ +.. |..+. +.+......+..+|.|||.||
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 34566777776 888888777 543 22111 112333445667899998884
Q ss_pred -------HHHHHHHHHHH
Q 024773 112 -------EAGSVFLEAWK 122 (262)
Q Consensus 112 -------~aV~~f~~~l~ 122 (262)
..++.|++.+.
T Consensus 104 ~y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 104 MWNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp CBTTBCCHHHHHHHHHHC
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 45666666543
No 349
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=40.27 E-value=52 Score=25.51 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=46.1
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH--------HHHHHH
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~--------f~~~l~ 122 (262)
++|+|..-...-..+.+.|++.|+++..++. .+ .+..+|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~--------~~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR--------VE-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS--------GG-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC--------hH-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 4677776544556778999999998776552 11 246789999987633111 222222
Q ss_pred HcCCCCcEEEEeChhHHHHHHHh
Q 024773 123 EAGTPNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~~~ 145 (262)
..+++++.|.-. .+.|-..
T Consensus 66 ---~~~~PilGIC~G-~Qll~~~ 84 (186)
T 2ywj_A 66 ---NSNLPILGTCAG-MVLLSKG 84 (186)
T ss_dssp ---TCCCCEEEETHH-HHHHSSC
T ss_pred ---hcCCcEEEECHH-HHHHHHH
Confidence 236788877754 4444433
No 350
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=40.16 E-value=2.3e+02 Score=27.36 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHH-------
Q 024773 47 SNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE------- 112 (262)
Q Consensus 47 ~l~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~------- 112 (262)
.+.|++|.|.-.+. ....+.+.|++.|+.|..+-.-.-. -.| ..+. ....||+|++....
T Consensus 534 ~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~-GvD-----~t~~~~~s~~fDAVvlPGG~~~~~~~~ 607 (688)
T 3ej6_A 534 TIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLAS-GVD-----QTYSAADATAFDAVVVAEGAERVFSGK 607 (688)
T ss_dssp CCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCT-TCC-----EETTTCCGGGCSEEEECTTCCTTTSTT
T ss_pred CccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCC-Ccc-----cCcccCChhcCcEEEECCCcccccccc
Confidence 48899998886654 1235678999999999876331110 011 1111 22469999997652
Q ss_pred ----------HHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCc
Q 024773 113 ----------AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD 154 (262)
Q Consensus 113 ----------aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~ 154 (262)
.+..|+...-++ .++|++||.+ ...|.+. |+.
T Consensus 608 ~~~d~Lr~~~~a~~fV~e~~~h---gKpIAAIchg-p~lL~~A------GI~ 649 (688)
T 3ej6_A 608 GAMSPLFPAGRPSQILTDGYRW---GKPVAAVGSA-KKALQSI------GVE 649 (688)
T ss_dssp TTCCTTSCTTHHHHHHHHHHHT---TCCEEEEGGG-HHHHHHT------TCC
T ss_pred cchhhhccCHHHHHHHHHHHHc---CCEEEEeCcc-HHHHHHc------CCC
Confidence 122333333333 6789999975 6788888 874
No 351
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=40.11 E-value=90 Score=26.42 Aligned_cols=79 Identities=11% Similarity=-0.032 Sum_probs=50.7
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCC-h-HHHHHHcCCCCEEEEeCHHHHHHHHHHhcccCCCC
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-D-QTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~-~-~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~~~~~ 254 (262)
.++||.+++.- +.+.+.++ .++ ++.|++..+..-. + ......++..|+|+.|.++-+..=++.+-+.....
T Consensus 140 ~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 140 KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccC
Confidence 57899988774 55666664 444 6777887765432 2 22333467999999999997766555543332223
Q ss_pred CeEEEECC
Q 024773 255 NSVACIAG 262 (262)
Q Consensus 255 ~~i~~IGp 262 (262)
..++-+||
T Consensus 213 ~~vvl~GP 220 (270)
T 2h1q_A 213 RRITLVGP 220 (270)
T ss_dssp SEEEEEST
T ss_pred CeEEEEec
Confidence 47888887
No 352
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=40.00 E-value=91 Score=21.55 Aligned_cols=109 Identities=9% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHH
Q 024773 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (262)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-----~~aV~~f~~~l 121 (262)
+.+.+||+.-.... ...+...|+..|+++... .+.++....+.....+|.|++-- .++.+ ++..+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-~~~~l 73 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAV--------SSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-VARVA 73 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-HHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-HHHHH
Confidence 45678999876543 356788888888865432 23333344443323789888742 34443 44445
Q ss_pred HHcCCCCcEEEEeCh-hHHHHHHHhhhhcCCCCce-eecCCCCCHHHHHHHhhh
Q 024773 122 KEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPK 173 (262)
Q Consensus 122 ~~~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~-~~~p~~~t~e~L~~~l~~ 173 (262)
.+.. .+.+++.+.. ...+...+. +.. ++..+..+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~~s~~~~~~~~~~~-------~~~~~~l~kP~~~~~l~~~i~~ 119 (132)
T 2rdm_A 74 REID-PNMPIVYISGHAALEWASNG-------VPDSIILEKPFTSAQLITAVSQ 119 (132)
T ss_dssp HHHC-TTCCEEEEESSCCTTHHHHS-------CTTCEEEESSCCHHHHHHHHHH
T ss_pred HhcC-CCCCEEEEeCCccHHHHHhh-------cCCcceEeCCCCHHHHHHHHHH
Confidence 5443 3566665543 333333322 221 356667788888877654
No 353
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=39.95 E-value=99 Score=21.97 Aligned_cols=111 Identities=10% Similarity=0.093 Sum_probs=62.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeC----HHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITS----PEAGSVFL 118 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IiFTS----~~aV~~f~ 118 (262)
....+.+|||...... ...+...|+..| +++.... ...+.+.... .. ..+|.|++-- .++.+ ++
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~-~~~~~~dlvi~D~~l~~~~g~~-~~ 86 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRT-DGLDAFDILMIDGAALDTAELA-AI 86 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCH-HHHTTCSEEEEECTTCCHHHHH-HH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHH-hcCCCCCEEEEeCCCCCccHHH-HH
Confidence 4455789999976543 456788888888 7665321 1111221111 22 5689888753 34444 33
Q ss_pred HHHHHcCCCCcEEEEeCh-hHHHH---HHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 119 EAWKEAGTPNVRIGVVGA-GTASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~-~Ta~~---L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
..+.+.. .+.+++.+.. ...+. +.+. |.. ++..+..+.+.|...+..
T Consensus 87 ~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~------ga~-~~l~Kp~~~~~L~~~i~~ 137 (146)
T 4dad_A 87 EKLSRLH-PGLTCLLVTTDASSQTLLDAMRA------GVR-DVLRWPLEPRALDDALKR 137 (146)
T ss_dssp HHHHHHC-TTCEEEEEESCCCHHHHHHHHTT------TEE-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHhC-CCCcEEEEeCCCCHHHHHHHHHh------CCc-eeEcCCCCHHHHHHHHHH
Confidence 4444443 3566665543 33333 3334 654 466777888988877754
No 354
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=39.61 E-value=33 Score=28.36 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEe-----eeCCCchHHHHH---HhcCCCccEEE----EeCH
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQH-----AQGPDTDRLSSV---LNADTIFDWII----ITSP 111 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~-----~~~~~~~~l~~~---l~~l~~~d~Ii----FTS~ 111 (262)
..++.||++|||..... ...+++.|.+.|++|+.+-.-.. .+..+.+.+... +...+ .++.+ +|+.
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 86 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRDR 86 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTCH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCCH
Confidence 35688999999988764 46799999999999875421100 000112222222 21111 12222 3788
Q ss_pred HHHHHHHHHHHHc-CCCCcEEEEeChh----HHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEcc
Q 024773 112 EAGSVFLEAWKEA-GTPNVRIGVVGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (262)
Q Consensus 112 ~aV~~f~~~l~~~-~~~~~~i~aVG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g 186 (262)
.+++.+++.+.+. +.-+.-|.+.|-. +.+..++. +.+.+...-...+.++..+.+.. .+.+|+++.+
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~-------~~~N~~g~~~l~~~~~~~~~~~~-~~g~iv~isS 158 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDV-------IDVNLTGVYHTIKVAIPTLVKQG-TGGSIVLISS 158 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHC-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHhCC-CCcEEEEEcc
Confidence 8898888766543 2223333333321 33444444 22222221122333334343321 2467888876
Q ss_pred CCCh------------------------hhHHHHHHhCCCeeeEEee
Q 024773 187 AKAS------------------------NEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 187 ~~~~------------------------~~L~~~L~~~G~~v~~i~v 209 (262)
..+. ..|..++...|+.|..+..
T Consensus 159 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~P 205 (278)
T 3sx2_A 159 SAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHP 205 (278)
T ss_dssp GGGTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHhcCCCccCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 4321 2345566667777766544
No 355
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=39.47 E-value=34 Score=28.31 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC---CCccEEE----EeCHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWII----ITSPEAGSVF 117 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~Ii----FTS~~aV~~f 117 (262)
..+.||++|||..... ...+++.|.+.|++|...- + +.+.+......+ ...+..+ +|+..+++.+
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~--r-----~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVAS--R-----NLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S-----CHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--C-----CHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 4567999999988764 4678999999999876431 1 112222211111 0112222 3778888888
Q ss_pred HHHHHHc-CCCCcEEEEeC
Q 024773 118 LEAWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 118 ~~~l~~~-~~~~~~i~aVG 135 (262)
++.+.+. +.-+.-|.+.|
T Consensus 90 ~~~~~~~~g~iD~lvnnAg 108 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAG 108 (267)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 7765442 22233444444
No 356
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.35 E-value=44 Score=29.42 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCC-CCcEEEEeC
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT-PNVRIGVVG 135 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~~~~~-~~~~i~aVG 135 (262)
.+.+.+.+.|+++..+.+-+. +.. .....+.++|.|||-|| ..++.|++.+..... .+.+++++|
T Consensus 276 ~i~~~l~~~g~~v~~~~l~~~----~~~---~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 276 ALLDGARSTGCETVLLEMTSS----DIT---KVALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHTTCEEEEEEGGGC----CHH---HHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHHhCCCeEEEEEcCcC----CHH---HHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 345556667876654433211 112 22234568999999987 468888888765444 455666554
No 357
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=39.30 E-value=32 Score=28.55 Aligned_cols=76 Identities=12% Similarity=0.004 Sum_probs=44.2
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC--ccEEE----EeCHHHHHH
Q 024773 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII----ITSPEAGSV 116 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~--~d~Ii----FTS~~aV~~ 116 (262)
+...+.||+||||..... ...+++.|.+.|++|...- +.. ...+++.+.+...+. ....+ +|+..+++.
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG--RNP--DKLAGAVQELEALGANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHH
Confidence 446788999999988764 4678999999999876431 110 011222233333221 02222 478888888
Q ss_pred HHHHHHH
Q 024773 117 FLEAWKE 123 (262)
Q Consensus 117 f~~~l~~ 123 (262)
+++.+.+
T Consensus 81 ~~~~~~~ 87 (281)
T 3svt_A 81 AVDAVTA 87 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 358
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=39.29 E-value=61 Score=24.45 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=49.8
Q ss_pred CcEEEEeChhHHHHHHH-hhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeE
Q 024773 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (262)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (262)
+.+++|-|- |++.|++ . |+.+..+-+.+ .++++.+.+.+++. +|+-
T Consensus 31 Gf~l~AT~g-Ta~~L~e~~------Gl~v~~v~k~~------------------------~eG~p~I~d~I~~g--eIdl 77 (134)
T 2xw6_A 31 RFPLVATGT-TGRRIEEAT------GLTVEKLLSGP------------------------LGGDQQMGARVAEG--RILA 77 (134)
T ss_dssp TSCEEECHH-HHHHHHHHH------CCCCEECSCGG------------------------GTHHHHHHHHHHTT--CEEE
T ss_pred CCEEEEccH-HHHHHHHhh------CceEEEEEecC------------------------CCCcchHHHHHHCC--CccE
Confidence 457888874 8999999 8 99875543211 01344455555433 3322
Q ss_pred Eeeecc--ccC--CCChHHHHHHcCCCCEEEEeCHHHHHHHHHHhcc
Q 024773 207 LNTYTT--EPV--HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (262)
Q Consensus 207 i~vY~~--~~~--~~~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~ 249 (262)
++--.. ... ......+.+.-...++-++|+..+++.+++.++.
T Consensus 78 VInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al~~ 124 (134)
T 2xw6_A 78 VIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWLQS 124 (134)
T ss_dssp EEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHHHT
T ss_pred EEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHHHH
Confidence 222221 111 1122233332224566789999999999998854
No 359
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=39.21 E-value=49 Score=27.18 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=29.3
Q ss_pred hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEE----EeCHHHHHHHHHHhcc
Q 024773 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISD 249 (262)
Q Consensus 190 ~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~iv----FtS~s~~~~~~~~~~~ 249 (262)
...+...|.+.|++| +.+|++........+..+.+....+.. ++++..++.+++.+.+
T Consensus 21 G~aiA~~la~~Ga~V--vi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 21 AFGVAKVLDQLGAKL--VFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp HHHHHHHHHHTTCEE--EEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEE--EEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456777777778776 666665332111111222222222333 2567777777665543
No 360
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=39.16 E-value=33 Score=28.57 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.||++|||..... ...+++.|.+.|++|+..- .+.+.+.+....++ ....+- +|+..+++.+++.+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVAD-------VNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-------SSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 5688999999988764 4679999999999886531 12222333322221 222221 47888888888766
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 96 ~~~~g~iD~lv~nAg 110 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAG 110 (277)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 543 22234444444
No 361
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=38.98 E-value=41 Score=27.61 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=45.9
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHH
Q 024773 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFL 118 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~ 118 (262)
+...+.||++|||..... ...+++.|.+.|++|+..- +.. ...+++...+... ..+..+ +|+..+++.++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~ 79 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAA--RTV--ERLEDVAKQVTDT-GRRALSVGTDITDDAQVAHLV 79 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEe--CCH--HHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHH
Confidence 345688999999988765 4679999999999876431 110 0112222233222 122322 47888999888
Q ss_pred HHHHHc
Q 024773 119 EAWKEA 124 (262)
Q Consensus 119 ~~l~~~ 124 (262)
+.+.+.
T Consensus 80 ~~~~~~ 85 (264)
T 3ucx_A 80 DETMKA 85 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 362
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=38.73 E-value=32 Score=28.38 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=49.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||+||||..... ...+++.|.+.|++|+..-- .. ....+.+...+...+ .+..+ +++..+++.+++.
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r--~~-~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~ 100 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR--SN-AEVADALKNELEEKG-YKAAVIKFDAASESDFIEAIQT 100 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SC-HHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CC-HHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHH
Confidence 5688999999988764 46799999999998764311 00 000122233332221 22322 3788888888876
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 101 ~~~~~g~id~li~nAg 116 (271)
T 4iin_A 101 IVQSDGGLSYLVNNAG 116 (271)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 6543 22234444444
No 363
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=38.69 E-value=1.1e+02 Score=22.00 Aligned_cols=108 Identities=8% Similarity=0.100 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHh--------cCCCccEEEEe----CHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLN--------ADTIFDWIIIT----SPEAG 114 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~--------~l~~~d~IiFT----S~~aV 114 (262)
+.+||+...+.. ...+.+.|++.|+ .+... .+..+....+. .-..+|.|+.- ..++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAF--------TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEE--------SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEe--------CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHH
Confidence 468999876543 4678888999998 44432 23333334443 23568888774 23444
Q ss_pred HHHHHHHHHc-CCCCcEEEE-eChhHHH---HHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 115 SVFLEAWKEA-GTPNVRIGV-VGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 115 ~~f~~~l~~~-~~~~~~i~a-VG~~Ta~---~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+ +++.+.+. ...+.++++ .+....+ .+.+. |.. ++..+..+.+.|.+.+..
T Consensus 76 ~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~ 131 (152)
T 3heb_A 76 D-ILKLVKENPHTRRSPVVILTTTDDQREIQRCYDL------GAN-VYITKPVNYENFANAIRQ 131 (152)
T ss_dssp H-HHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT------TCS-EEEECCSSHHHHHHHHHH
T ss_pred H-HHHHHHhcccccCCCEEEEecCCCHHHHHHHHHC------CCc-EEEeCCCCHHHHHHHHHH
Confidence 4 34445542 223555554 4433333 33445 665 466777888888877754
No 364
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=38.38 E-value=1.1e+02 Score=26.87 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=28.3
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (262)
..+.+++|+|..+..-...+...+++.|++++.+.
T Consensus 20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 20 HMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 33568899999887667889999999999987764
No 365
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=38.37 E-value=86 Score=25.64 Aligned_cols=104 Identities=10% Similarity=0.063 Sum_probs=59.5
Q ss_pred ccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEE
Q 024773 103 FDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (262)
Q Consensus 103 ~d~IiFT-S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~v 181 (262)
..++.+= |+.+++..-+.+...+..++.+. .|.. +.+... ......++..+.-...+.+.+++.+.....+|+++
T Consensus 105 ~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~-~~d~--~~~~~~-~~~~~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l 180 (249)
T 3g89_A 105 LELVLVDATRKKVAFVERAIEVLGLKGARAL-WGRA--EVLARE-AGHREAYARAVARAVAPLCVLSELLLPFLEVGGAA 180 (249)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCSSEEEE-ECCH--HHHTTS-TTTTTCEEEEEEESSCCHHHHHHHHGGGEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCceEEE-ECcH--HHhhcc-cccCCCceEEEECCcCCHHHHHHHHHHHcCCCeEE
Confidence 3343333 56666666666666666564443 3432 222210 00000344433333356678888777776678999
Q ss_pred EEEccCCChh---hHHHHHHhCCCeeeEEeee
Q 024773 182 LYPASAKASN---EIEEGLSNRGFEVVRLNTY 210 (262)
Q Consensus 182 L~~~g~~~~~---~L~~~L~~~G~~v~~i~vY 210 (262)
++..|....+ .+.+.++..|+.+.++.-|
T Consensus 181 ~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 181 VAMKGPRVEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 9998865443 4566778889988777766
No 366
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=38.35 E-value=39 Score=27.46 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=52.1
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
++|.+..+... ..-+.+.|+++|..+... . ....+. +.+...+..-...|+|+.++-...-..++
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 199 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--Q--PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 199 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--E--ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--c--CCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHH
Confidence 57776654321 123667788888765421 1 111111 23444554445789999999888888888
Q ss_pred HHHHcCCCCcEEEEeChh
Q 024773 120 AWKEAGTPNVRIGVVGAG 137 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~ 137 (262)
.+.+.+.+++.|+..+..
T Consensus 200 al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 200 ALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HHHHHTCCSCEEEEEECC
T ss_pred HHHHcCCCCcEEEEecCC
Confidence 888888777888877654
No 367
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=38.30 E-value=11 Score=30.82 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHhcCC-CccEEEEeCHHHHHHHHHHHHHcCC--CCcEEEEeChhH
Q 024773 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAGT 138 (262)
Q Consensus 93 l~~~l~~l~-~~d~IiFTS~~aV~~f~~~l~~~~~--~~~~i~aVG~~T 138 (262)
+.+.+..-. ..|+|+.++-......++.+.+.+. +++.|++.+...
T Consensus 170 ~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~~~ 218 (272)
T 3o74_A 170 MQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGDNQ 218 (272)
T ss_dssp HHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEESCCG
T ss_pred HHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeCChH
Confidence 444454434 6888888887777777777877774 567777777643
No 368
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=38.30 E-value=95 Score=26.20 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=51.5
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~ 122 (262)
..++|.+..++.. .+.+.+.|+++|.++.....+... ..+.......+.. ...|+|++ .+......++..+.
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~ 227 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYA 227 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 4567777654432 245677888999987543333211 1233332233322 35788888 77777778888888
Q ss_pred HcCCCCcEEEEeCh
Q 024773 123 EAGTPNVRIGVVGA 136 (262)
Q Consensus 123 ~~~~~~~~i~aVG~ 136 (262)
+.++. .+++..|-
T Consensus 228 ~~g~~-vp~~~~~~ 240 (375)
T 4evq_A 228 AANLG-IPLWGPGF 240 (375)
T ss_dssp HTTCC-CCEEEEGG
T ss_pred HcCCC-ceEEecCc
Confidence 88764 67776653
No 369
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=38.21 E-value=1.9e+02 Score=24.86 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=47.7
Q ss_pred ccEEEEEccCC-----ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeC--HHHHHHHHHHhc
Q 024773 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLIS 248 (262)
Q Consensus 178 g~~vL~~~g~~-----~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS--~s~~~~~~~~~~ 248 (262)
.+++.++..+. ..+.+.+.+++.|++|.....|..... .. ...+..+ .+.|+|++.+ +..+..|++.+.
T Consensus 164 ~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~-d~-~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 164 NNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVS-DW-GPTLAKLRADPPAVIVVTHFYPQDQALFMNQFM 241 (419)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCS-CC-HHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCc-cH-HHHHHHHHhcCCCEEEEccccCchHHHHHHHHH
Confidence 47887777654 245677888899998877666754322 22 2333334 3889998863 567888888887
Q ss_pred ccC
Q 024773 249 DTE 251 (262)
Q Consensus 249 ~~~ 251 (262)
+.+
T Consensus 242 ~~g 244 (419)
T 3h5l_A 242 TDP 244 (419)
T ss_dssp TSC
T ss_pred HcC
Confidence 654
No 370
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=37.85 E-value=33 Score=28.71 Aligned_cols=143 Identities=16% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~- 124 (262)
.|.||++|||....+ ...+++.|.+.|++|...- +.+. +.+.+.+ .-..| +|+..+++.+++.+.+.
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~--r~~~----~~~~~~~--~~~~D---v~~~~~v~~~~~~~~~~~ 76 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTA--RARP----EGLPEEL--FVEAD---LTTKEGCAIVAEATRQRL 76 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEE--SSCC----TTSCTTT--EEECC---TTSHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEE--CCch----hCCCcEE--EEEcC---CCCHHHHHHHHHHHHHHc
Confidence 578999999988764 3678999999999987532 1111 1000000 00112 47888888888776543
Q ss_pred CCCCcEEEEeC----------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-----
Q 024773 125 GTPNVRIGVVG----------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (262)
Q Consensus 125 ~~~~~~i~aVG----------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~----- 189 (262)
+.-+.-|-..| +.+.+.+++. +.+.+...-.....++..|.+. .+.+++.+.+-.+
T Consensus 77 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~~--~~G~Iv~isS~~~~~~~~ 147 (261)
T 4h15_A 77 GGVDVIVHMLGGSSAAGGGFSALSDDDWYNE-------LSLNLFAAVRLDRQLVPDMVAR--GSGVVVHVTSIQRVLPLP 147 (261)
T ss_dssp SSCSEEEECCCCCCCCSSCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGTSCCT
T ss_pred CCCCEEEECCCCCccCCCCcccCCHHHHHHH-------HHHHhHHHHHHHHhhchhhhhc--CCceEEEEEehhhccCCC
Confidence 32122222222 2234444444 2222222112334444444432 2466776665321
Q ss_pred ----------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 ----------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 ----------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..+|...|++|..+.-
T Consensus 148 ~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~P 183 (261)
T 4h15_A 148 ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSP 183 (261)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeC
Confidence 24566677778888876653
No 371
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=37.77 E-value=19 Score=28.82 Aligned_cols=58 Identities=7% Similarity=0.075 Sum_probs=33.0
Q ss_pred HHHHHHHhC--CCcEEEeceEEee-eCCCch----------------------HHHHHHhcCCCccEEEEeCH-------
Q 024773 64 KLIKALAKH--RIDCLELPLIQHA-QGPDTD----------------------RLSSVLNADTIFDWIIITSP------- 111 (262)
Q Consensus 64 ~l~~~L~~~--G~~v~~~P~~~~~-~~~~~~----------------------~l~~~l~~l~~~d~IiFTS~------- 111 (262)
.+.+.+++. |.++..+-+++.. |..+.. .+...+.++..+|.|||.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 455666666 8999888776542 211100 02333445667888888876
Q ss_pred HHHHHHHHHH
Q 024773 112 EAGSVFLEAW 121 (262)
Q Consensus 112 ~aV~~f~~~l 121 (262)
..++.|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 372
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.69 E-value=48 Score=27.06 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=54.3
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~ 122 (262)
.++|.+..+... ..-+.+.++++|..+... ...... +.+.+.+.+....+.|+|+.++-...-..++.+.
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 198 (277)
T 3hs3_A 122 IEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENN--PYISAQSALNKSNQFDAIITVNDLYAAEIIKEAK 198 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSC--HHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCc--hHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHH
Confidence 357776654421 234667788899877654 222111 1344555565446789999988888878888888
Q ss_pred HcCC---CCcEEEEeChhH
Q 024773 123 EAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 123 ~~~~---~~~~i~aVG~~T 138 (262)
+.+. +++.|+..+...
T Consensus 199 ~~g~~vP~di~vig~d~~~ 217 (277)
T 3hs3_A 199 RRNLKIPDDFQLVGYDNNI 217 (277)
T ss_dssp HTTCCTTTTCEEECSBCCG
T ss_pred HcCCCCCCceEEEeeCCcH
Confidence 8876 367777666543
No 373
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=37.61 E-value=31 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=28.8
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
+-+.++.||+||||..... ...+.+.|.+.|++|..+
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~ 50 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVI 50 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3457789999999987653 467889999999988754
No 374
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=37.57 E-value=77 Score=30.78 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=50.9
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhH
Q 024773 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~T 138 (262)
.-.+|.+.|++.|++|+.. .+.++....+++-..+++||++---.-..+++.+.+.+ .+++|+.++...
T Consensus 18 ~i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~~-~~iPVFl~~~~~ 86 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMN-ENLPLYAFANTY 86 (715)
T ss_dssp HHHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHHC-TTCEEEEECCTT
T ss_pred HHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 3468999999999998633 34455556666667899999998776667777777664 478888888763
No 375
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=37.54 E-value=76 Score=27.34 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=55.0
Q ss_pred HHHHHHHhhhhcCCCCcee--ecCCCCCHHHHHHHhhhCCC-CccEEEEEccCCC---------------hhhHHHHHHh
Q 024773 138 TASIFEEVIQSSKCSLDVA--FSPSKATGKILASELPKNGK-KKCTVLYPASAKA---------------SNEIEEGLSN 199 (262)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~--~~p~~~t~e~L~~~l~~~~~-~g~~vL~~~g~~~---------------~~~L~~~L~~ 199 (262)
++..+++. |+.+. +...+.|-+++-+.|..... .-+.+|.++|+.. ..+|.+.+++
T Consensus 63 ~a~~i~~~------g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~ 136 (310)
T 3apt_A 63 WAQRIQSL------GLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRE 136 (310)
T ss_dssp HHHHHHHT------TCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHH
T ss_pred HHHHHHHh------CCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 34555555 66553 22334565555555443221 1256888887742 3345555555
Q ss_pred C-CC-eeeEEeeecc-ccCCCChH-H---HHHHcC-CCCEEE---EeCHHHHHHHHHHhccc
Q 024773 200 R-GF-EVVRLNTYTT-EPVHHVDQ-T---VLKQAL-SIPVVA---VASPSAVRSWVNLISDT 250 (262)
Q Consensus 200 ~-G~-~v~~i~vY~~-~~~~~~~~-~---~~~~l~-~~d~iv---FtS~s~~~~~~~~~~~~ 250 (262)
. |- -..-+.+|=- .+.....+ + +.+.++ +.|.++ |+....+..|++.+...
T Consensus 137 ~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~ 198 (310)
T 3apt_A 137 RYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRA 198 (310)
T ss_dssp HHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEEEECCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHHc
Confidence 4 52 2334566631 11112221 1 222222 566655 78999999998888754
No 376
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=37.53 E-value=48 Score=25.96 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=45.1
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-HH-HHH------HHHHH
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AG-SVF------LEAWK 122 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-aV-~~f------~~~l~ 122 (262)
++|+|..-...-....+.|++.|+++..++. .+ .+.++|.|+++-.. .+ +.+ .+.+.
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~--------~~-------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 66 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR--------PE-------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLR 66 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS--------GG-------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC--------hH-------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHH
Confidence 5788886544445667999999998776542 11 23579999998653 22 111 11111
Q ss_pred HcCCCCcEEEEeChhHHHHHHHh
Q 024773 123 EAGTPNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~~~ 145 (262)
+....+.+++.|.-. .+.|-..
T Consensus 67 ~~~~~~~pilgIC~G-~q~l~~~ 88 (196)
T 2nv0_A 67 EFAAQGKPMFGTCAG-LIILAKE 88 (196)
T ss_dssp HHHHTTCCEEEETHH-HHHHSBC
T ss_pred HHHHCCCcEEEECHH-HHHHHHH
Confidence 111136788887764 3444443
No 377
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=37.47 E-value=33 Score=29.22 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (262)
.|.+|+++.+......+...++..|+++..+|+.......|.+.+++.+.. .+...|++++++ + ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 477888886544334444667788999998886211111245666666643 356788888765 2 45555555
Q ss_pred HHc
Q 024773 122 KEA 124 (262)
Q Consensus 122 ~~~ 124 (262)
.++
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 378
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=37.36 E-value=44 Score=26.63 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=34.4
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 024773 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV 114 (262)
....+.+.|++.|+++.... +.+ .|.+.+.+.+.+. .++|.||.|-..++
T Consensus 50 n~~~L~~~L~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 50 SGPLVTELLTEAGFVVDGVV---AVE-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---EEC-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 34578889999998877653 333 2445666666543 57999999877665
No 379
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=37.34 E-value=1.2e+02 Score=22.07 Aligned_cols=109 Identities=8% Similarity=0.021 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeC----HHHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITS----PEAGSVFLEAWKE 123 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~IiFTS----~~aV~~f~~~l~~ 123 (262)
+.+||+...+.. ...+...|++.|+++.. . ..+.++....+.... .+|.|++-- .++.+ +++.+.+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~-----~--~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIID-----T--AADGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-CLSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEE-----E--ESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-HHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEE-----E--ECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-HHHHHHh
Confidence 458999976543 45688889889977641 1 123333333443321 578887742 23443 3444444
Q ss_pred cCCCCcEEEEeC-h---hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 124 AGTPNVRIGVVG-A---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 124 ~~~~~~~i~aVG-~---~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.. .+.+|+++. . .....+.+. |.. ++..+..+.+.|.+.+...
T Consensus 108 ~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FD-KNARVIMISALGKEQLVKDCLIK------GAK-TFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HC-TTCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHT
T ss_pred hC-CCCcEEEEeccCcHHHHHHHHHc------CCC-EEEeCCCCHHHHHHHHHHH
Confidence 43 345555544 2 233344455 765 4667778899998877654
No 380
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=37.21 E-value=44 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.8
Q ss_pred cccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.++...+.|++||||..... ...+.+.|.+.|++|..+
T Consensus 3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 41 (342)
T 1y1p_A 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGT 41 (342)
T ss_dssp STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 34455678999999988653 467888898999988753
No 381
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=36.98 E-value=1.3e+02 Score=23.89 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHH-----HhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEE
Q 024773 110 SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-----EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP 184 (262)
Q Consensus 110 S~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~-----~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~ 184 (262)
|+.+++..-+.+...+..++.+. .|.. ..+. .. .++..+.-.....+.+++.+.....+|+.+++.
T Consensus 103 s~~~~~~a~~~~~~~~~~~v~~~-~~d~--~~~~~~~~~~~------~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 103 LNKRITFLEKLSEALQLENTTFC-HDRA--ETFGQRKDVRE------SYDIVTARAVARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp CHHHHHHHHHHHHHHTCSSEEEE-ESCH--HHHTTCTTTTT------CEEEEEEECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEE-eccH--HHhcccccccC------CccEEEEeccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 45555555555555555444333 4433 2221 11 244433333356677887777766678888888
Q ss_pred ccCCChh---hHHHHHHhCCCeeeEEeeec
Q 024773 185 ASAKASN---EIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 185 ~g~~~~~---~L~~~L~~~G~~v~~i~vY~ 211 (262)
.|....+ .+.+.+++.|+.+.++.-|.
T Consensus 174 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 174 KAASAEEELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp ECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eCCCchHHHHHHHHHHHHcCCeEeEEEEEe
Confidence 8765544 35567888898887665543
No 382
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=36.90 E-value=1.4e+02 Score=28.93 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCCCCCeEEEeCC--CC----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHH-H---
Q 024773 46 ASNSNPKVVVTRE--RG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE-A--- 113 (262)
Q Consensus 46 ~~l~g~~VLitR~--~~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IiFTS~~-a--- 113 (262)
..+.|++|+|.-. +. ....+.+.|++.|++|..+-.-.- ...|. .+. ....||+||+.... +
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-~~vD~-----t~~~~~s~~fDAVvlPGG~~g~~~ 598 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-NNVDE-----TYSASDAVQFDAVVVADGAEGLFG 598 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-TTCCE-----ESTTCCGGGCSEEEECTTCGGGCC
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-ccccc-----chhcCCccccCeEEecCCCccccc
Confidence 4578899998876 32 234678899999999987755211 11221 111 23479999998773 2
Q ss_pred ----------------------HHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCc
Q 024773 114 ----------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD 154 (262)
Q Consensus 114 ----------------------V~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~ 154 (262)
+..|+...-++ ++.|++||.+.. .|.+. |+.
T Consensus 599 ~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~---gKpIaAIc~ap~-vL~~a------Gi~ 651 (688)
T 2iuf_A 599 ADSFTVEPSAGSGASTLYPAGRPLNILLDAFRF---GKTVGALGSGSD-ALESG------QIS 651 (688)
T ss_dssp TTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHH---TCEEEEEGGGHH-HHHHT------TCC
T ss_pred ccccccccccccchhhcccChHHHHHHHHHHHc---CCEEEEECchHH-HHHHc------CCC
Confidence 22333322222 678999998754 88888 884
No 383
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=36.89 E-value=1.3e+02 Score=25.78 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=33.8
Q ss_pred CCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcC--CCCEEEEeCH
Q 024773 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASP 237 (262)
Q Consensus 176 ~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~--~~d~ivFtS~ 237 (262)
.+|.+|+++........+.+.++..|+++..+.+-... ....+++.+.+. +..+|+++++
T Consensus 84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 84 EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGT--VFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCC--CCCHHHHHHHHhhCCCcEEEEEcc
Confidence 35677777776544333556667778777666653221 123344444342 5677777775
No 384
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=36.88 E-value=43 Score=27.65 Aligned_cols=85 Identities=13% Similarity=0.062 Sum_probs=54.7
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~ 118 (262)
.++|++...... ..-+.+.|+++|.++.... ...+. +.+...+..-.+.|+|+..+-......+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD-----VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLG 204 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE-----CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee-----cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHH
Confidence 356666644321 2346778888898876532 11121 2344445555678999999988877888
Q ss_pred HHHHHcCC----CCcEEEEeChhHH
Q 024773 119 EAWKEAGT----PNVRIGVVGAGTA 139 (262)
Q Consensus 119 ~~l~~~~~----~~~~i~aVG~~Ta 139 (262)
+.+.+.+. .++.|+..+....
T Consensus 205 ~al~~~g~~vP~~dv~vig~D~~~~ 229 (297)
T 3rot_A 205 QMLLHPDRYDFNYQPQVYSFDKTPN 229 (297)
T ss_dssp HHHHSHHHHTCCCCCEEEEECCCHH
T ss_pred HHHHhcCCccCCCceEEEEeCCCHH
Confidence 88877765 3788998887443
No 385
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=36.51 E-value=1.1e+02 Score=26.58 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=50.0
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS--~~aV~~f~~~l 121 (262)
..++|.+..++.. .+.+.+.+++.|+++.....+... ..|.......++. .+.|+|++++ +.....|+..+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-VSDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS-CSCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC-CccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 3478887766542 245666777889988754433321 1244333333433 4789999874 46677788888
Q ss_pred HHcCCCCcEEEE
Q 024773 122 KEAGTPNVRIGV 133 (262)
Q Consensus 122 ~~~~~~~~~i~a 133 (262)
.+.+. +..++.
T Consensus 241 ~~~g~-~~~~~~ 251 (419)
T 3h5l_A 241 MTDPT-NSLVYL 251 (419)
T ss_dssp TTSCC-SCEEEE
T ss_pred HHcCC-CceEEe
Confidence 87777 445544
No 386
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=36.44 E-value=41 Score=27.93 Aligned_cols=157 Identities=11% Similarity=0.139 Sum_probs=81.8
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEE--------e-eeCCCchHHHHH---HhcCCCccEEE---
Q 024773 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQ--------H-AQGPDTDRLSSV---LNADTIFDWII--- 107 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~--------~-~~~~~~~~l~~~---l~~l~~~d~Ii--- 107 (262)
+...+.||++|||..... ...+++.|.+.|++|+.+-.-. . ....+.+.+.+. +... ..+..+
T Consensus 5 m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (286)
T 3uve_A 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH-NRRIVTAEV 83 (286)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred CCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc-CCceEEEEc
Confidence 345688999999988764 4679999999999987542110 0 000112222222 2222 223333
Q ss_pred -EeCHHHHHHHHHHHHHc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCC
Q 024773 108 -ITSPEAGSVFLEAWKEA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 176 (262)
Q Consensus 108 -FTS~~aV~~f~~~l~~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~ 176 (262)
+|+..+++.+++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-...+.++..+.+..
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~~~~~~~~~~~~- 155 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEM-------IDINLAGVWKTVKAGVPHMIAGG- 155 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHhCC-
Confidence 37888999888876543 322333444331 234444444 22222211112233333333321
Q ss_pred CccEEEEEccCCC--------------------hhhHHHHHHhCCCeeeEEee
Q 024773 177 KKCTVLYPASAKA--------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 177 ~g~~vL~~~g~~~--------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
.+.+|+++.+..+ ...|..+|...|++|..+..
T Consensus 156 ~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~P 208 (286)
T 3uve_A 156 RGGSIILTSSVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHP 208 (286)
T ss_dssp SCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCcEEEEECchhhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEec
Confidence 2468888877432 22455667677888776643
No 387
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=36.33 E-value=1.5e+02 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=18.0
Q ss_pred CccEEEEEccCCChhhHHHHHHhCCCeeeEEee
Q 024773 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 177 ~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~v 209 (262)
+|.+|++...........+.++..|+++..+.+
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV 119 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEec
Confidence 455666666544322345555666666655554
No 388
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=36.29 E-value=37 Score=28.18 Aligned_cols=77 Identities=9% Similarity=0.041 Sum_probs=45.0
Q ss_pred ccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE--EEeCHHHHHHHH
Q 024773 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI--IITSPEAGSVFL 118 (262)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~I--iFTS~~aV~~f~ 118 (262)
++...+.||++|||..... ...+++.|.+.|++|+..-. .. ...+++...+... .....+ =+++..+++.++
T Consensus 21 ~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 96 (270)
T 3ftp_A 21 SMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTAT--TE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALV 96 (270)
T ss_dssp --CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHH
Confidence 3446688999999988764 46799999999998764311 00 0112222223221 122222 247888888888
Q ss_pred HHHHH
Q 024773 119 EAWKE 123 (262)
Q Consensus 119 ~~l~~ 123 (262)
+.+.+
T Consensus 97 ~~~~~ 101 (270)
T 3ftp_A 97 ESTLK 101 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 389
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=36.28 E-value=42 Score=28.22 Aligned_cols=157 Identities=11% Similarity=0.144 Sum_probs=81.4
Q ss_pred cCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEe-----eeCCCchHHHHH---HhcCCCccEEE----EeC
Q 024773 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQH-----AQGPDTDRLSSV---LNADTIFDWII----ITS 110 (262)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~-----~~~~~~~~l~~~---l~~l~~~d~Ii----FTS 110 (262)
+...+.||++|||....+ ...+++.|.+.|++|+.+-.-+. ....+.+.+.+. +...+ .++.+ +|+
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~ 100 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRD 100 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTC
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 446688999999988764 46789999999999875421100 000112222222 22222 22322 378
Q ss_pred HHHHHHHHHHHHHc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccE
Q 024773 111 PEAGSVFLEAWKEA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (262)
Q Consensus 111 ~~aV~~f~~~l~~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~ 180 (262)
..+++.+++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.....++..+.+. ..+.+
T Consensus 101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~~~~~~-~~~g~ 172 (299)
T 3t7c_A 101 FDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDM-------IDVNLNGAWITARVAIPHIMAG-KRGGS 172 (299)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHT-TSCEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHH-------HHHhhHHHHHHHHHHHHHHHhc-CCCcE
Confidence 88998888766543 322333333331 234444444 2222221111223333333322 13468
Q ss_pred EEEEccCCC--------------------hhhHHHHHHhCCCeeeEEee
Q 024773 181 VLYPASAKA--------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 181 vL~~~g~~~--------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
|+++.+..+ ...|..+|...|+.|..+..
T Consensus 173 Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~P 221 (299)
T 3t7c_A 173 IVFTSSIGGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCP 221 (299)
T ss_dssp EEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred EEEECChhhccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEec
Confidence 888876432 22455667677888776644
No 390
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=36.14 E-value=1.3e+02 Score=25.11 Aligned_cols=83 Identities=13% Similarity=-0.025 Sum_probs=48.1
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-HHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWK 122 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS-~~aV~~f~~~l~ 122 (262)
..++|.+..+... .+.+.+.|+++|+++.....+... ..+.......+.. ...|+|++.+ ......++..+.
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 211 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLVA-ANPDAILVGASGTAAALPQTTLR 211 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHHH-HCCSEEEEECCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 3467777644321 245677888999887643333221 1233322223323 3678988887 677777788888
Q ss_pred HcCCCCcEEEEe
Q 024773 123 EAGTPNVRIGVV 134 (262)
Q Consensus 123 ~~~~~~~~i~aV 134 (262)
+.++. .+++.+
T Consensus 212 ~~g~~-~p~i~~ 222 (362)
T 3snr_A 212 ERGYN-GLIYQT 222 (362)
T ss_dssp HTTCC-SEEEEC
T ss_pred HcCCC-ccEEec
Confidence 87764 344443
No 391
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=36.11 E-value=78 Score=26.22 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=33.3
Q ss_pred hHHHHHHhCCC----eeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 192 EIEEGLSNRGF----EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 192 ~L~~~L~~~G~----~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
-+.+.|.++|. ++. +.++.+...........+.+ .++|.|++.+..+...+... ..+++++.+|
T Consensus 28 gi~~~l~~~Gy~~g~~v~-l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~-----~~~iPvV~~~ 97 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLE-FDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSA-----TKTIPIVFTA 97 (302)
T ss_dssp HHHHHHHHTTCCBTTTEE-EEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHHH-----CSSSCEEEEE
T ss_pred HHHHHHHHcCCCCCCceE-EEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHhc-----CCCcCEEEEe
Confidence 35567777776 442 23333332221111223333 48999999887655544332 2356777664
No 392
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=35.98 E-value=81 Score=25.98 Aligned_cols=53 Identities=8% Similarity=-0.104 Sum_probs=43.7
Q ss_pred HhcCCCccEEEEeCHHHHHHHHHHHHHcC---CCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024773 97 LNADTIFDWIIITSPEAGSVFLEAWKEAG---TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (262)
Q Consensus 97 l~~l~~~d~IiFTS~~aV~~f~~~l~~~~---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (262)
.....+-+.|..-|.+.+.+|.+.+.+.. ..++.++.-+..|++.++++ |+++
T Consensus 13 ~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~------Gi~l 68 (225)
T 3l7o_A 13 AQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQAL------GIPL 68 (225)
T ss_dssp HTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHH------TCCB
T ss_pred HHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhcc------CceE
Confidence 33467889999999999999999987641 12688999999999999999 9875
No 393
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.93 E-value=73 Score=25.61 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=43.5
Q ss_pred CccEEEEEccCCC-------hhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHHHHHHHHHHhcc
Q 024773 177 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (262)
Q Consensus 177 ~g~~vL~~~g~~~-------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~ 249 (262)
.+.+++++.-..+ -..+.+.|++.|+++..+.+.+ ...++..+.+...|.|+++-..+. .+.+.+++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~-~l~~~L~~ 99 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTF-FLLQELKR 99 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHH-HHHHHHHH
Confidence 3678887753322 2467789999999876665543 223344445668899999887666 45555554
Q ss_pred c
Q 024773 250 T 250 (262)
Q Consensus 250 ~ 250 (262)
.
T Consensus 100 ~ 100 (206)
T 3l4e_A 100 T 100 (206)
T ss_dssp H
T ss_pred C
Confidence 3
No 394
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.86 E-value=45 Score=24.85 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=35.4
Q ss_pred ChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHH-----HHHHHHHHhcccCCCCCeEEEEC
Q 024773 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s-----~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
+...+...|+..|++|..+-.. .++ +++.+.. .+.|+|.+++.. .+..+++.+++....++++++=|
T Consensus 19 G~~~v~~~l~~~G~~Vi~lG~~--~p~----e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 19 GNKILDHAFTNAGFNVVNIGVL--SPQ----ELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE--ECH----HHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEECCCC--CCH----HHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3556667788888877655442 222 2333322 267777776633 23444555554333356665543
No 395
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=35.69 E-value=62 Score=27.79 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=84.9
Q ss_pred eEEEeCCCCChHHHHH----HHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHHH----HHHHHH
Q 024773 52 KVVVTRERGKNGKLIK----ALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAG----SVFLEA 120 (262)
Q Consensus 52 ~VLitR~~~~~~~l~~----~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IiFTS~~aV----~~f~~~ 120 (262)
-|++...+..+..+.+ ..++.|++...+-+ -.....+++...+ +.....|.|+.--|--- +...+.
T Consensus 37 avilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~l---p~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~ 113 (288)
T 1b0a_A 37 AVVLVGSNPASQIYVASKRKACEEVGFVSRSYDL---PETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLER 113 (288)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEE---CTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTT
T ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC---CCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhc
Confidence 3455544444444433 45567887754422 1111234444444 45577899998875211 111111
Q ss_pred HHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC--CCccEEEEEccCC-ChhhHHHHH
Q 024773 121 WKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGL 197 (262)
Q Consensus 121 l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~g~~-~~~~L~~~L 197 (262)
+.. .+.+=...+.-...|- . |-. .+.| -|.+++++.|..+. ..|++++++.... ....+...|
T Consensus 114 I~p----~KDVDG~~p~n~g~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL 179 (288)
T 1b0a_A 114 IHP----DKDVDGFHPYNVGRLC-Q------RAP-RLRP--CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179 (288)
T ss_dssp SCT----TTCTTCCSHHHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred cCC----ccCcccCCccchhHHh-C------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHH
Confidence 111 1111122232222332 2 422 2444 47888888777653 4688988887774 466788899
Q ss_pred HhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH
Q 024773 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (262)
Q Consensus 198 ~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~ 237 (262)
.+.|++|+-+.-.. . ++.+.+...|+|+-+.+
T Consensus 180 ~~~gAtVtv~hs~t-----~---~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 180 LLAGCTTTVTHRFT-----K---NLRHHVENADLLIVAVG 211 (288)
T ss_dssp HTTTCEEEEECSSC-----S---CHHHHHHHCSEEEECSC
T ss_pred HHCCCeEEEEeCCc-----h---hHHHHhccCCEEEECCC
Confidence 99999886553111 1 23333457788877766
No 396
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=35.65 E-value=30 Score=28.93 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=37.9
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~ 111 (262)
.+|+||||..... ...+.+.|.+.|++|..+.--....+.+.+.+...+... +.|+||.+..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~-~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASE-RIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHH-CCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhc-CCCEEEEcCe
Confidence 3689999987653 467888998999887653211001122334455555321 6899998653
No 397
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=35.64 E-value=41 Score=27.48 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.||++|||..... ...+++.|.+.|++|...- .+.+.+++....++ ...++. +++...++.+++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIAD-------IDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHH
Confidence 4578999999988654 4678999999999876431 12223333332222 222221 36788888887765
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 77 ~~~~g~id~lv~~Ag 91 (259)
T 4e6p_A 77 VEHAGGLDILVNNAA 91 (259)
T ss_dssp HHHSSSCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 543 22233444444
No 398
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=35.60 E-value=44 Score=27.55 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~ 119 (262)
...+.||++|||..... ...+++.|.+.|++|...-. ......+.+.+.+...+ .+... +|+..+++.+++
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA---NSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHH
Confidence 45688999999988764 46789999999998874211 10001122233333322 22333 368888988887
Q ss_pred HHHH
Q 024773 120 AWKE 123 (262)
Q Consensus 120 ~l~~ 123 (262)
.+.+
T Consensus 89 ~~~~ 92 (270)
T 3is3_A 89 QAVA 92 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 399
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=35.49 E-value=39 Score=27.96 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.++.||+||||..... ...+++.|.+.|++|+..
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 44 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 5688999999988764 467999999999998753
No 400
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=35.43 E-value=93 Score=25.61 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=33.4
Q ss_pred hHHHHHHhCCC---eeeEEeeeccccCCCChHHHHHHc--CCCCEEEEeCHHHHHHHHHHhcccCCCCCeEEEEC
Q 024773 192 EIEEGLSNRGF---EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIA 261 (262)
Q Consensus 192 ~L~~~L~~~G~---~v~~i~vY~~~~~~~~~~~~~~~l--~~~d~ivFtS~s~~~~~~~~~~~~~~~~~~i~~IG 261 (262)
-+.+.|.+.|. ++. +.++.+...........+.+ .++|.|++.+..+.+.+... ..+++++.+|
T Consensus 22 gi~~~l~~~gy~g~~v~-l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~-----~~~iPvV~~~ 90 (295)
T 3lft_A 22 GIQDGLAEEGYKDDQVK-IDFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASA-----TKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHHTTCCGGGEE-EEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHHH-----CSSSCEEEES
T ss_pred HHHHHHHHcCCCCCceE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHc-----CCCCCEEEEe
Confidence 45567777777 542 22233322221112233333 38999999887655443322 2457777665
No 401
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=35.31 E-value=46 Score=27.14 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=47.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.||+||||..... ...+++.|.+.|++|...- +. + ...+++.+.+.. -....++. +++..+++.+++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r~-~-~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVA--RQ-V-DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVES 78 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE--SC-H-HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc--CC-H-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4577999999988654 4678999999999876431 10 0 001112222211 11222222 3678888888776
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 79 ~~~~~g~id~lv~~Ag 94 (263)
T 3ai3_A 79 VRSSFGGADILVNNAG 94 (263)
T ss_dssp HHHHHSSCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 5443 22234444444
No 402
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=35.08 E-value=72 Score=27.66 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
.+++|||+........+...+++.|++++.+-... ..+..|.+.+.+..+. ..+|+|+..+-.....
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~-~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-EKPHYIVPEIEAIATD 88 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHH-HCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHH-cCCCEEEECCCcCCHH
Confidence 46799999665446788999999999887653211 1111233344444322 3688888866433222
Q ss_pred HHHHHHHc
Q 024773 117 FLEAWKEA 124 (262)
Q Consensus 117 f~~~l~~~ 124 (262)
+...++..
T Consensus 89 ~~~~l~~~ 96 (391)
T 1kjq_A 89 MLIQLEEE 96 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 33444444
No 403
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=34.98 E-value=39 Score=28.04 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=24.8
Q ss_pred CCCeEEEeCC----------------CC-ChHHHHHHHHhCCCcEEEe
Q 024773 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 49 ~g~~VLitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (262)
.|++||||.+ .. ....+++.+..+|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4899999987 34 4578999999999999854
No 404
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=34.92 E-value=35 Score=27.79 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhc-CCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNA-DTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~-l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG~~ 137 (262)
-+.+.++++|..+. ++......+ .+.+.+.+.. ..+.|+|+.++-.....+++.+.+.+. +++.|+..+..
T Consensus 139 gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 215 (277)
T 3cs3_A 139 VSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNS 215 (277)
T ss_dssp HHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCC
T ss_pred HHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCc
Confidence 35567778887765 221111000 1223444433 346888888888877777888877765 35666666654
Q ss_pred H
Q 024773 138 T 138 (262)
Q Consensus 138 T 138 (262)
.
T Consensus 216 ~ 216 (277)
T 3cs3_A 216 E 216 (277)
T ss_dssp H
T ss_pred H
Confidence 4
No 405
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=34.82 E-value=86 Score=26.25 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
...|.|++|.++........+...|++.|.+...+ +..+. +..+....+ .-+..|+++...+.....
T Consensus 126 ~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v---~~v~~-~~~~~~~al-~~G~vDa~~~~~p~~~~~ 192 (324)
T 3ksx_A 126 VADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDI---TPLYL-SPANARAAF-AAGQVDAWAIWDPWYSAL 192 (324)
T ss_dssp GGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGS---EEEEC-CHHHHHHHH-HTTCCSEEEEETTHHHHH
T ss_pred HHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHe---EEEeC-CHHHHHHHH-HcCCCCEEEEccHHHHHH
Confidence 45688999999855544455777899999875432 22232 233344455 347899988877766543
No 406
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=34.78 E-value=48 Score=26.81 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.|++||||..... ...+++.|.+.|++|...
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 37 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAAC 37 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4577999999988764 467899999999987643
No 407
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=34.77 E-value=36 Score=29.67 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHcCCCCcEEEEeC
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~-------aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
.+.+.|.+.|.++..+.+ .. .+...+ ...+.++|.++|-||. .++.|++.+......+.+++++|
T Consensus 271 ~ia~~l~~~g~~v~~~~~---~~-~~~~~~---~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 271 ALMDGLVAGGCEVKLFKL---SV-SDRNDV---IKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHTTCEEEEEEG---GG-SCHHHH---HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEC---CC-CCHHHH---HHHHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 344556666766543332 21 122222 2234679999999862 57888887765445567777776
No 408
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=34.70 E-value=1.4e+02 Score=22.01 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEE-ccCC----Ch
Q 024773 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP-ASAK----AS 190 (262)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~-~g~~----~~ 190 (262)
.+.+.+.+... +..|++=|..-..+|+++ |+...+.-.......+++.+.. ..+.|+++ -++. .+
T Consensus 10 e~~~~l~~~s~-~~vIvVEGk~D~~~L~~~------g~~~iI~t~Gtal~~~i~~l~~---~~~~VIIltD~D~aGe~ir 79 (118)
T 1t6t_1 10 EWIKELKKASR-EAVILVEGKNDKKALSKF------SIKNVIDLSGKRYADVVDMLEG---KWEKVILLFDLDTHGERIN 79 (118)
T ss_dssp HHHHHHHHHTT-TSEEEESSHHHHHHHHTT------TCCCEEECTTSCHHHHHHHHTT---TCSEEEECCCSSHHHHHHH
T ss_pred HHHHHHHHhcC-CcEEEEEChHHHHHHHHh------CcCcEEEECCCcHHHHHHHHHh---CCCEEEEEECCChhHHHHH
Confidence 34444544432 568999999999999999 9984333333333445554432 12324444 4443 45
Q ss_pred hhHHHHHHhCCCee
Q 024773 191 NEIEEGLSNRGFEV 204 (262)
Q Consensus 191 ~~L~~~L~~~G~~v 204 (262)
..+.+.|...|+.+
T Consensus 80 ~~i~~~l~~~~~~v 93 (118)
T 1t6t_1 80 QKMKELLSSQGFLV 93 (118)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHhcCccCcee
Confidence 66667777777766
No 409
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=34.58 E-value=31 Score=26.92 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.8
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHHHH
Q 024773 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAG 114 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IiFTS~~aV 114 (262)
...+.+.|++.|++|.... +.+ .+.+.+.+.+. ....+|.||.|-..++
T Consensus 42 g~~L~~~L~~~G~~v~~~~---iV~-Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYS---LVP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEE---EEC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3568899999999987653 332 23455555543 2467899999876654
No 410
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.52 E-value=43 Score=27.04 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeCh
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG~ 136 (262)
-+.+.++++|..+...-.+ ....+. +.+.+.+......|+|+.++-.....+++.+.+.+. +++.|++.+.
T Consensus 141 gf~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 218 (275)
T 3d8u_A 141 GWQSAMIENYLTPDHFLTT--HEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEG 218 (275)
T ss_dssp HHHHHHHHTTCCCCCEEEC--SSCCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred HHHHHHHHcCCCCCccEEE--eCCCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 3566778888654321111 111111 224444543356889988888877777888877775 3677888776
Q ss_pred hH
Q 024773 137 GT 138 (262)
Q Consensus 137 ~T 138 (262)
..
T Consensus 219 ~~ 220 (275)
T 3d8u_A 219 SS 220 (275)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 411
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=34.52 E-value=66 Score=27.20 Aligned_cols=150 Identities=9% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHH
Q 024773 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (262)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 144 (262)
....+++.|.+..+.|+ ++.+ .+.+...+.++.+ ++..+-.|-|.=.+.+- .+.+. ....+.
T Consensus 19 hn~~f~~~gl~~~Y~~~-~v~~-~~l~~~~~~~~~~-~~~G~nVTiP~K~~v~~-~~d~l--------------~~~A~~ 80 (277)
T 3don_A 19 HHANFQSLNLENTYEAI-NVPV-NQFQDIKKIISEK-SIDGFNVTIPHKERIIP-YLDDI--------------NEQAKS 80 (277)
T ss_dssp HHHHHHHTTCCCEEEEE-ECCG-GGGGGHHHHHHHT-TCSEEEECTTCTTTTGG-GCSEE--------------CHHHHH
T ss_pred HHHHHHHcCcCcEEEEE-EcCH-HHHHHHHHHHhhC-CCCEEEECcCCHHHHHH-HhhhC--------------CHHHHH
Confidence 34577889998766654 3222 2233333444343 68999999986544321 11110 111111
Q ss_pred hhhhcCCCC-cee------ecCCCCCHHHHHHHhhhCC--CCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccC
Q 024773 145 VIQSSKCSL-DVA------FSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (262)
Q Consensus 145 ~~~~~~~G~-~~~------~~p~~~t~e~L~~~l~~~~--~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~ 215 (262)
. |- +.. +....-+..|++..|.+.. ..+++++++.+......+...|.+.|+. ++.+|.+...
T Consensus 81 i------GAVNTv~~~~g~l~G~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~--~v~v~~R~~~ 152 (277)
T 3don_A 81 V------GAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRP--TLTVANRTMS 152 (277)
T ss_dssp H------TCCCEEEEETTEEEEECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCS--CCEEECSCGG
T ss_pred h------CceeEEEecCCEEEEECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCC--EEEEEeCCHH
Confidence 1 11 110 1223346778888876543 3578999998877777888899998872 3455554432
Q ss_pred CC----------ChHHHHHHcCCCCEEEEeCHHHH
Q 024773 216 HH----------VDQTVLKQALSIPVVAVASPSAV 240 (262)
Q Consensus 216 ~~----------~~~~~~~~l~~~d~ivFtS~s~~ 240 (262)
.. ..+++.+.+...|+|+-+.|...
T Consensus 153 ~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 187 (277)
T 3don_A 153 RFNNWSLNINKINLSHAESHLDEFDIIINTTPAGM 187 (277)
T ss_dssp GGTTCCSCCEEECHHHHHHTGGGCSEEEECCC---
T ss_pred HHHHHHHhcccccHhhHHHHhcCCCEEEECccCCC
Confidence 11 12233333457899999888764
No 412
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=34.49 E-value=47 Score=26.30 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=32.5
Q ss_pred HHHHHHhhhCCCCccEEEEEcc--CCChhhHHHHHHhCCCeeeEEeeec
Q 024773 165 KILASELPKNGKKKCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYT 211 (262)
Q Consensus 165 e~L~~~l~~~~~~g~~vL~~~g--~~~~~~L~~~L~~~G~~v~~i~vY~ 211 (262)
+.+++.+.....+|+++++... ....+.+.+.|++.|+.+..+..+.
T Consensus 159 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 207 (230)
T 3evz_A 159 VKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKV 207 (230)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecC
Confidence 5566666666667778776433 3456788889999999887776544
No 413
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=34.40 E-value=83 Score=24.59 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=32.3
Q ss_pred hCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCH-------HHHHHHHHHh
Q 024773 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 247 (262)
Q Consensus 199 ~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~-------s~~~~~~~~~ 247 (262)
+...+|+.+.+|+ .....+..+.+...|.|||.+| ...+.|++.+
T Consensus 26 ~~~~~v~v~dL~~----~~D~~~~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv 77 (177)
T 3ha2_A 26 ENFSNVTWHPLVA----DFNVEQEQSLLLQNDRIILEFPLYWYSAPALLKQWMDTV 77 (177)
T ss_dssp TTCTTEEEEECCT----TCCHHHHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred hcCCCEEEEECCC----cccHHHHHHHHHhCCEEEEECChhhccCCHHHHHHHHHH
Confidence 3345788888888 3333444556679999999875 7788898885
No 414
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=34.35 E-value=38 Score=27.73 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~ 119 (262)
...+.||++|||..... ...+++.|.+.|++|+..-. .. ...+++...+...+ .+... +++..+++.+++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDL--KS--EGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEES--SH--HHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CH--HHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHH
Confidence 35688999999988764 46789999999998764311 00 01122223332221 22222 378888888887
Q ss_pred HHHH
Q 024773 120 AWKE 123 (262)
Q Consensus 120 ~l~~ 123 (262)
.+.+
T Consensus 82 ~~~~ 85 (256)
T 3gaf_A 82 AALD 85 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 415
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=34.31 E-value=56 Score=26.96 Aligned_cols=53 Identities=6% Similarity=-0.121 Sum_probs=43.4
Q ss_pred HhcCCCccEEEEeCHHHHHHHHHHHHHcC---CCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024773 97 LNADTIFDWIIITSPEAGSVFLEAWKEAG---TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (262)
Q Consensus 97 l~~l~~~d~IiFTS~~aV~~f~~~l~~~~---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (262)
..-+.+.+.|.+-|.+.+.++.+.+.+.. ..++.++.-+..+++.+++. |+++
T Consensus 15 ~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~------gi~v 70 (226)
T 2pjm_A 15 VKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQY------EIPL 70 (226)
T ss_dssp GGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHT------TCCB
T ss_pred HHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhc------CCeE
Confidence 33467889999999999999999987642 12688999999999999998 8764
No 416
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=34.24 E-value=51 Score=26.79 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=43.7
Q ss_pred cEEEEEccCCC-----------hhhHHHHHHhC--CC-eeeEEeeeccccCCCCh-------------------------
Q 024773 179 CTVLYPASAKA-----------SNEIEEGLSNR--GF-EVVRLNTYTTEPVHHVD------------------------- 219 (262)
Q Consensus 179 ~~vL~~~g~~~-----------~~~L~~~L~~~--G~-~v~~i~vY~~~~~~~~~------------------------- 219 (262)
.++|++.|.-. .+.+.+.|++. |. +|+.+.+|+...+....
T Consensus 5 mkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (223)
T 3u7i_A 5 NKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTER 84 (223)
T ss_dssp CEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHH
Confidence 36777766532 23445566554 57 88888888754332211
Q ss_pred -HHHHHHcCCCCEEEEeC-------HHHHHHHHHHhcc
Q 024773 220 -QTVLKQALSIPVVAVAS-------PSAVRSWVNLISD 249 (262)
Q Consensus 220 -~~~~~~l~~~d~ivFtS-------~s~~~~~~~~~~~ 249 (262)
.++.+.+...|.|||.+ |...+.|++.+-.
T Consensus 85 ~~~l~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~ 122 (223)
T 3u7i_A 85 MSEILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMI 122 (223)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhh
Confidence 11233345899999998 4788999998643
No 417
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=34.21 E-value=1.8e+02 Score=24.90 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=35.8
Q ss_pred CcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCC--C--HHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHh
Q 024773 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA--T--GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSN 199 (262)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~--t--~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~ 199 (262)
+.-|.--|..|..++... |....++|-.+ . -..-++.+.+ .|--+++...+...+.|.+.+.+
T Consensus 254 DlvI~raG~~Tv~E~~a~------G~P~Ilip~p~~~~~~Q~~NA~~l~~---~G~a~~l~~~~~~~~~L~~~i~~ 320 (365)
T 3s2u_A 254 DLVICRAGALTVSELTAA------GLPAFLVPLPHAIDDHQTRNAEFLVR---SGAGRLLPQKSTGAAELAAQLSE 320 (365)
T ss_dssp SEEEECCCHHHHHHHHHH------TCCEEECC-----CCHHHHHHHHHHT---TTSEEECCTTTCCHHHHHHHHHH
T ss_pred eEEEecCCcchHHHHHHh------CCCeEEeccCCCCCcHHHHHHHHHHH---CCCEEEeecCCCCHHHHHHHHHH
Confidence 444444688887777778 99877776432 1 1222333443 23455666666666777777653
No 418
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=34.17 E-value=35 Score=27.93 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEeCh
Q 024773 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (262)
Q Consensus 93 l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i~aVG~ 136 (262)
+.+.+......|+|+..+-.....+++.+.+.+.+++.|+..+.
T Consensus 182 ~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 182 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp HHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred HHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 44445444568888888877666777777777765666666654
No 419
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=34.00 E-value=79 Score=26.67 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (262)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~ 122 (262)
..++|.+...+.. .+.+.+.++++|.++...-.+.... .+.......+.. ...|+|++ .+......++..+.
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFA 215 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHH
Confidence 3467776654432 3457778889998876543332221 233332233323 35788887 66666777788888
Q ss_pred HcCCC--CcEEEEeCh-hHHHHHH
Q 024773 123 EAGTP--NVRIGVVGA-GTASIFE 143 (262)
Q Consensus 123 ~~~~~--~~~i~aVG~-~Ta~~L~ 143 (262)
+.++. +++++..+. .+...++
T Consensus 216 ~~g~~~~~v~~~~~~~~~~~~~~~ 239 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPGDVMDDDLLN 239 (368)
T ss_dssp HTTGGGTTCEEEEETTTTCHHHHT
T ss_pred HcCCCcCCceEEecCcccCHHHHH
Confidence 77764 267777663 3334443
No 420
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=33.98 E-value=1.1e+02 Score=26.73 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=35.4
Q ss_pred ccEEEEEccCCC------hhhHHHHHHhCCCeeeEEeeeccccCCCChH---HHHHHcC--CCCEEE-EeCHHHHH
Q 024773 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQAL--SIPVVA-VASPSAVR 241 (262)
Q Consensus 178 g~~vL~~~g~~~------~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~---~~~~~l~--~~d~iv-FtS~s~~~ 241 (262)
|+|++++.+... .+.+.+.|++.|+.+. +|.....+...+ +..+.+. +.|.|+ +-..+..+
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~---~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D 112 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYE---IFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMD 112 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEE---EEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEE---EeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 478999988733 2567778888887653 444333333332 2333332 788888 54555433
No 421
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=33.92 E-value=2.3e+02 Score=24.77 Aligned_cols=32 Identities=3% Similarity=0.045 Sum_probs=26.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEe
Q 024773 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~ 79 (262)
-++|+++|.........+.+..++.|++++.+
T Consensus 3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v 34 (425)
T 3vot_A 3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFF 34 (425)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCEEEEE
Confidence 35789999987777778889999999998754
No 422
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=33.90 E-value=64 Score=26.14 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=38.4
Q ss_pred CccEEEEEccC---CChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEE--EeCHHHHHHHHHHhcc
Q 024773 177 KKCTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA--VASPSAVRSWVNLISD 249 (262)
Q Consensus 177 ~g~~vL~~~g~---~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~iv--FtS~s~~~~~~~~~~~ 249 (262)
+++++|+-.|. .-...+...|.+.|++| +.++++........++.+......++. ++++..++.+++.+.+
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V--~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAEL--AFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEE--EEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCE--EEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45677766654 23557788888888876 455554221111112222222333222 3677888888777644
No 423
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=33.88 E-value=1e+02 Score=24.11 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024773 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (262)
..+.|++|.+.++......+.+.+.+.|.++. +....+..+....+ ..++.|+++.....
T Consensus 144 ~dL~g~~i~~~~g~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~l-~~g~vDa~~~~~~~ 203 (259)
T 2v25_A 144 ADMKGANIGVAQAATTKKAIGEAAKKIGIDVK------FSEFPDYPSIKAAL-DAKRVDAFSVDKSI 203 (259)
T ss_dssp GGCTTCEEEEETTCSHHHHHHHHHHHTTCCCE------EEEESSHHHHHHHH-HTTSSSEEEEEHHH
T ss_pred HHhCCCEEEEecCCchHHHHHHHHHhcCCcee------EEEeCCHHHHHHHH-HcCCCcEEEecHHH
Confidence 45789999998776666667777788887542 22223334444444 45789987765543
No 424
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=33.68 E-value=1.2e+02 Score=24.84 Aligned_cols=49 Identities=10% Similarity=-0.105 Sum_probs=40.6
Q ss_pred HhcCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHh
Q 024773 97 LNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 97 l~~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~ 145 (262)
..-+.+-+.|.+-|.+.+..|.+.+.+. +..+++++.-+..++..|.+.
T Consensus 15 a~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~ 67 (229)
T 1lk5_A 15 LKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEH 67 (229)
T ss_dssp GGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT
T ss_pred HHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhC
Confidence 3446788999999999999999999654 222688999999999999987
No 425
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=33.63 E-value=36 Score=27.80 Aligned_cols=74 Identities=7% Similarity=0.050 Sum_probs=43.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC----CCccEEE--EeCHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD----TIFDWII--ITSPEAGSVFL 118 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l----~~~d~Ii--FTS~~aV~~f~ 118 (262)
..+.|+++|||..... ...+++.|.+.|++|+..- +.. ...+++.+.+... ....++- +|+..+++.++
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIA--RSK--QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEI 78 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEE--SCH--HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHH
Confidence 4578999999988764 4678999999999876531 111 0112222222211 2222222 47888888888
Q ss_pred HHHHH
Q 024773 119 EAWKE 123 (262)
Q Consensus 119 ~~l~~ 123 (262)
+.+.+
T Consensus 79 ~~~~~ 83 (250)
T 3nyw_A 79 KDIHQ 83 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 426
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=33.52 E-value=48 Score=26.89 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=43.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.||+||||..... ...+++.|.+.|++|...- + .+ .+.+++.+...+ ...++. +++..+++.+++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~----r-~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIAD----L-VP-APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV 76 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----S-SC-CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc----C-Cc-hhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3477999999988764 4679999999999876431 1 11 022333333322 222221 36788888887765
Q ss_pred HH
Q 024773 122 KE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 77 ~~ 78 (249)
T 2ew8_A 77 IS 78 (249)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 427
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=33.48 E-value=47 Score=27.06 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.||++|||..... ...+++.|.+.|++|+..-. .. ...+ +....+ ....++. +|+..+++.+++.+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r--~~--~~~~---~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDL--KP--PAGE---EPAAELGAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES--SC--C---------------CEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC--Ch--HHHH---HHHHHhCCceEEEEccCCCHHHHHHHHHHH
Confidence 4578999999988764 46799999999999875421 11 1111 111111 1222222 47888888888766
Q ss_pred HH
Q 024773 122 KE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 76 ~~ 77 (257)
T 3tpc_A 76 KQ 77 (257)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 428
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=33.37 E-value=50 Score=27.07 Aligned_cols=71 Identities=6% Similarity=-0.011 Sum_probs=42.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-ccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.|++||||..... ...+++.|.+.|++|...- + +.+.++.....+.. ..++. +++..+++.+++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGD--I-----LDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S-----CHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe--C-----CHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Confidence 3477999999988764 4678999999999876431 1 11222222222211 11111 36777888777655
Q ss_pred HH
Q 024773 122 KE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 76 ~~ 77 (260)
T 1nff_A 76 VT 77 (260)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 429
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.25 E-value=43 Score=25.97 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=33.5
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 024773 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (262)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiFTS~~aV 114 (262)
....+.+.|++.|+++... .+.+ .| +.+.+.+.+. .++|.||.|-..++
T Consensus 28 n~~~l~~~l~~~G~~v~~~---~iv~-Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQP---EVVA-DG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp HHHHHHHHHHHTTCEECCC---EEEC-SS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEE---EEeC-CH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3467889999999987654 3333 34 6666666543 37999998876665
No 430
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=33.24 E-value=1.2e+02 Score=24.79 Aligned_cols=49 Identities=4% Similarity=-0.193 Sum_probs=39.8
Q ss_pred HhcCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHh
Q 024773 97 LNADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEV 145 (262)
Q Consensus 97 l~~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~ 145 (262)
..-+.+-+.|.+-|.+.+..+.+.+.+. +.++++++.-+..++..|++.
T Consensus 17 a~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~ 69 (227)
T 1uj6_A 17 IAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKRE 69 (227)
T ss_dssp HTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHT
T ss_pred HHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhC
Confidence 3346788999999999999999998654 222388999999999999976
No 431
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=33.13 E-value=49 Score=26.72 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.|++||||..... ...+++.|.+.|++|+.+-. .. ...+++...+...+ ....+ +|+...++.+++.
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADI--NA--EAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcC--CH--HHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHH
Confidence 5578999999988764 46799999999998765311 00 01122222232221 12222 3678888888876
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 80 ~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 80 TLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6543 22234444444
No 432
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=33.03 E-value=1.3e+02 Score=21.17 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=61.9
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC---HHHHHHHHHHHHHcC
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS---PEAGSVFLEAWKEAG 125 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS---~~aV~~f~~~l~~~~ 125 (262)
+++||+...+.. ...+...|+..|+++... .+..+....+. -..+|.|+.-- .++.+ ++..+.+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlvi~d~~~~~~g~~-~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWA--------KNEQEAFTFLR-REKIDLVFVDVFEGEESLN-LIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEE--------SSHHHHHHHHT-TSCCSEEEEECTTTHHHHH-HHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHh-ccCCCEEEEeCCCCCcHHH-HHHHHHHHC
Confidence 468888866543 456778888888765422 23333344443 35789988763 23333 344454433
Q ss_pred CCCcEEEEeCh-hH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 126 TPNVRIGVVGA-GT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 126 ~~~~~i~aVG~-~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.+.+++.+.. .. ...+.+. |.. ++..+..+.+.|...+..
T Consensus 74 -~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 117 (142)
T 2qxy_A 74 -PDTKVAVLSAYVDKDLIINSVKA------GAV-DYILKPFRLDYLLERVKK 117 (142)
T ss_dssp -TTCEEEEEESCCCHHHHHHHHHH------TCS-CEEESSCCHHHHHHHHHH
T ss_pred -CCCCEEEEECCCCHHHHHHHHHC------Ccc-eeEeCCCCHHHHHHHHHH
Confidence 3567666533 22 3334455 665 356677788888877754
No 433
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=32.98 E-value=49 Score=27.07 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=43.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|...- +. ....+.+...+... ..+..+ +++..+++.+++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r~--~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLD--MN--REALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SC--HHHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe--CC--HHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHH
Confidence 4577999999988754 4678999999999876431 10 00112222223222 122222 3678888887776
Q ss_pred HHH
Q 024773 121 WKE 123 (262)
Q Consensus 121 l~~ 123 (262)
+.+
T Consensus 78 ~~~ 80 (262)
T 1zem_A 78 VVR 80 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 434
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=32.97 E-value=1.8e+02 Score=24.68 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=51.5
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (262)
Q Consensus 49 ~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF-TS~~aV~~f~~~l~ 122 (262)
..++|.+...+. ..+.+.+.++++|.++.....+... ..+.......+.. .+.|+|++ .+......++..+.
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDAK 219 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 457887775543 2346788899999987643332221 1233333333323 46899885 77777788888888
Q ss_pred HcCCCCcEEEEeC
Q 024773 123 EAGTPNVRIGVVG 135 (262)
Q Consensus 123 ~~~~~~~~i~aVG 135 (262)
+.++ +.+++..+
T Consensus 220 ~~g~-~~~~~~~~ 231 (392)
T 3lkb_A 220 RLGL-KMRHLGAH 231 (392)
T ss_dssp HTTC-CCEEEECG
T ss_pred HcCC-CceEEEec
Confidence 8776 35666543
No 435
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=32.94 E-value=48 Score=27.34 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEe------eeCCCchHHHHH---HhcCCCccEEE----EeC
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQH------AQGPDTDRLSSV---LNADTIFDWII----ITS 110 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~------~~~~~~~~l~~~---l~~l~~~d~Ii----FTS 110 (262)
...+.||++|||..... ...+++.|.+.|++|+.+-.-.. ....+.+.+++. +... ..+..+ +++
T Consensus 6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~ 84 (277)
T 3tsc_A 6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-NRRIVAAVVDTRD 84 (277)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTC
T ss_pred ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCCC
Confidence 35688999999988764 46799999999999875421000 000122223222 2222 122222 478
Q ss_pred HHHHHHHHHHHHHc-CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEE
Q 024773 111 PEAGSVFLEAWKEA-GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (262)
Q Consensus 111 ~~aV~~f~~~l~~~-~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~v 181 (262)
..+++.+++.+.+. +.-+.-|.+.| ..+.+.+++. +.+.+...-.....++..+.+.. .+.+|
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~~~~~~~-~~g~i 156 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV-------MDINVTGTWNTVMAGAPRIIEGG-RGGSI 156 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHHT-SCEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHH-------HHHhHHHHHHHHHHHHHHHHhcC-CCCEE
Confidence 88888888766543 32233333333 2244444444 22222211112233333333321 24678
Q ss_pred EEEccCCC--------------------hhhHHHHHHhCCCeeeEEee
Q 024773 182 LYPASAKA--------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 182 L~~~g~~~--------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
+++.+..+ ...|..+|...|+.|..+..
T Consensus 157 v~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~P 204 (277)
T 3tsc_A 157 ILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHP 204 (277)
T ss_dssp EEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred EEEccHhhCCCCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEe
Confidence 88877432 23455666667887766543
No 436
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.82 E-value=2e+02 Score=24.24 Aligned_cols=86 Identities=16% Similarity=0.008 Sum_probs=43.1
Q ss_pred CHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHc---CCCCEEEEeCHH-
Q 024773 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPS- 238 (262)
Q Consensus 163 t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l---~~~d~ivFtS~s- 238 (262)
..+++.-.+.....+|.+|+++............++..|+++..+.+-... ....+++.+.+ .+..+|+++++.
T Consensus 68 ~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~n 145 (392)
T 2z9v_A 68 PVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNE--AIDPQAVADMLKAHPEITVVSVCHHDT 145 (392)
T ss_dssp THHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTS--CCCHHHHHHHHHHCTTCCEEEEESEEG
T ss_pred chHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCC--CCCHHHHHHHHhcCCCCcEEEEeccCC
Confidence 344443333332335677887776543222334445567777666653211 12334444444 256677777654
Q ss_pred ------HHHHHHHHhccc
Q 024773 239 ------AVRSWVNLISDT 250 (262)
Q Consensus 239 ------~~~~~~~~~~~~ 250 (262)
..+.+.+.++++
T Consensus 146 ptG~~~~l~~i~~l~~~~ 163 (392)
T 2z9v_A 146 PSGTINPIDAIGALVSAH 163 (392)
T ss_dssp GGTEECCHHHHHHHHHHT
T ss_pred CCceeccHHHHHHHHHHc
Confidence 245555555543
No 437
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=32.73 E-value=70 Score=26.42 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEE
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (262)
..+.||++|||..... ...+++.|.+.|++|+.
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 58 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIV 58 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3477999999988764 46799999999998764
No 438
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.70 E-value=87 Score=22.50 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=39.4
Q ss_pred ccEEEEEccCCCh-----hhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcCCCCEEEEeCHHHHHHHHHHhccc-C
Q 024773 178 KCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-E 251 (262)
Q Consensus 178 g~~vL~~~g~~~~-----~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~ivFtS~s~~~~~~~~~~~~-~ 251 (262)
..++|++|+.+.. ..+.+..+++|.+++-..+=... .. +.++++|+|+ .+|.-. +.++.+++. .
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~-~~-------~~~~~~DvvL-LgPQV~-y~~~~ik~~~~ 75 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HY-------DIMGVYDLII-LAPQVR-SYYREMKVDAE 75 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS-CT-------TTGGGCSEEE-ECGGGG-GGHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH-HH-------hhccCCCEEE-EChHHH-HHHHHHHHHhh
Confidence 4678888888753 34556667778766443311111 11 1124678554 466543 333333332 1
Q ss_pred CCCCeEEEEC
Q 024773 252 QWSNSVACIA 261 (262)
Q Consensus 252 ~~~~~i~~IG 261 (262)
..+++|+.|-
T Consensus 76 ~~~ipV~vI~ 85 (108)
T 3nbm_A 76 RLGIQIVATR 85 (108)
T ss_dssp TTTCEEEECC
T ss_pred hcCCcEEEeC
Confidence 2368888874
No 439
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=32.59 E-value=50 Score=26.38 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.|++||||..... ...+++.|.+.|++|...
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 37 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIIT 37 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4577999999988654 467899999999887643
No 440
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=32.54 E-value=1e+02 Score=25.33 Aligned_cols=52 Identities=8% Similarity=0.037 Sum_probs=42.8
Q ss_pred HhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEE-EEeChhHHHHHHHhhhhcCCCCce
Q 024773 97 LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVGAGTASIFEEVIQSSKCSLDV 155 (262)
Q Consensus 97 l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~~~~i-~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (262)
.....+-+.|..-|.+.+.+|.+.+.+.. .++++ +.-+..|++.++++ |+++
T Consensus 21 ~~~V~~g~~IglgsGST~~~~i~~L~~~~-~~itv~VtnS~~~a~~l~~~------gi~l 73 (224)
T 3kwm_A 21 AKSITTEITLGVGTGSTVGFLIEELVNYR-DKIKTVVSSSEDSTRKLKAL------GFDV 73 (224)
T ss_dssp HTTCCSSEEEEECCSHHHHHHHHHGGGCT-TTEEEEEESCHHHHHHHHHT------TCCB
T ss_pred HHhCCCCCEEEECCcHHHHHHHHHHHhhc-CceEEEECCcHHHHHHHHHc------CCeE
Confidence 33457789999999999999999987642 36777 88999999999999 8864
No 441
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=32.47 E-value=53 Score=27.14 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=80.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCC----CchHHHHHHhcCC-CccEEE--EeCHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGP----DTDRLSSVLNADT-IFDWII--ITSPEAGSVF 117 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~----~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f 117 (262)
..+.||++|||..... ...+++.|.+.|++|+..-.-. .... ..+++...+...+ ...++. +|+..+++.+
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSA-VANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC-SCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccc-hhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 4578999999988764 4678999999999876542111 1111 1122222222211 111211 4788999988
Q ss_pred HHHHHHc-CCCCcEEEEeCh--------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCC
Q 024773 118 LEAWKEA-GTPNVRIGVVGA--------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK 188 (262)
Q Consensus 118 ~~~l~~~-~~~~~~i~aVG~--------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~ 188 (262)
++.+.+. +.-+.-|.+.|- .+.+.+++. +.+.+...-.....++..|.+ ..+.+++++.+..
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~-------~~vN~~g~~~l~~~~~~~m~~--~~~g~iv~isS~~ 151 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLM-------QQVNARGSFVCAQACLPHLLQ--APNPHILTLAPPP 151 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHH-------HHHTHHHHHHHHHHHHHHHTT--SSSCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHH-------HhHhhHhHHHHHHHHHHHHHh--cCCceEEEECChH
Confidence 8876553 322344444442 334444444 222221111122333333332 2346888887754
Q ss_pred Ch----------------------hhHHHHHHhCCCeeeEEee
Q 024773 189 AS----------------------NEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 189 ~~----------------------~~L~~~L~~~G~~v~~i~v 209 (262)
+. ..|..+|...|+.|..+..
T Consensus 152 ~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~P 194 (274)
T 3e03_A 152 SLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWP 194 (274)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEC
T ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEEC
Confidence 32 2345567777888766654
No 442
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.40 E-value=63 Score=27.16 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=48.3
Q ss_pred CCeEEEeCCCCCh------HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 50 NPKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 50 g~~VLitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
.++|.+....... .-+.+.++++|. +.....+. ...+. +.+...+..-.+.|+|+.++-...-.+++
T Consensus 175 ~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~ 251 (342)
T 1jx6_A 175 HTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYY--TKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVD 251 (342)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEEC--CCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHH
T ss_pred CceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEec--CCCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHH
Confidence 3677766544321 235566777775 22111111 11111 22444454445688888888877777777
Q ss_pred HHHHcCCCCcEEEEeChhH
Q 024773 120 AWKEAGTPNVRIGVVGAGT 138 (262)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T 138 (262)
.+.+.+.+++.|+..+...
T Consensus 252 al~~~g~~di~vvg~D~~~ 270 (342)
T 1jx6_A 252 ALAELGREDIMINGWGGGS 270 (342)
T ss_dssp HHHHHTCTTSEEBCSBCCH
T ss_pred HHHHcCCCCcEEEEeCCCH
Confidence 7777776667777776654
No 443
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=32.35 E-value=82 Score=26.27 Aligned_cols=51 Identities=10% Similarity=-0.126 Sum_probs=42.9
Q ss_pred cCCCccEEEEeCHHHHHHHHHHHHHc----CCCCcEEEEeChhHHHHHHHhhhhcCCCCce
Q 024773 99 ADTIFDWIIITSPEAGSVFLEAWKEA----GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (262)
Q Consensus 99 ~l~~~d~IiFTS~~aV~~f~~~l~~~----~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (262)
...+-+.|.+-|.+.+..|.+.+.+. +..+++++.-+..|+..|++. |+++
T Consensus 24 ~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~------gi~v 78 (244)
T 2f8m_A 24 YVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKL------GIPL 78 (244)
T ss_dssp HCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHH------TCCB
T ss_pred hCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHC------CCeE
Confidence 46788999999999999999999754 233689999999999999998 7754
No 444
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=32.34 E-value=1.1e+02 Score=24.80 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=47.2
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAWKE 123 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~l~~ 123 (262)
.||++|||..... ...+++.|.+.|++|+..-. ......+++...+... ..++.+ +|+..+++.+++.+.+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~---r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYA---RSKKAALETAEEIEKL-GVKVLVVKANVGQPAKIKEMFQQIDE 78 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5889999988754 46799999999999874210 0000112222333222 223333 3788899988887654
Q ss_pred c-CCCCcEEEEeC
Q 024773 124 A-GTPNVRIGVVG 135 (262)
Q Consensus 124 ~-~~~~~~i~aVG 135 (262)
. +.-+.-|.+.|
T Consensus 79 ~~g~id~lv~nAg 91 (258)
T 3oid_A 79 TFGRLDVFVNNAA 91 (258)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 3 32234444444
No 445
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=32.23 E-value=49 Score=27.31 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=40.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|+..- .+.+.+ ..+..-.... +|+..+++.+++.
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~-------r~~~~~----~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLA-------RRVERL----KALNLPNTLCAQVDVTDKYTFDTAITR 80 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEE-------SCHHHH----HTTCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE-------CCHHHH----HHhhcCCceEEEecCCCHHHHHHHHHH
Confidence 4577999999988764 4678999999999987531 111222 1222112222 3678888887776
Q ss_pred HHH
Q 024773 121 WKE 123 (262)
Q Consensus 121 l~~ 123 (262)
+.+
T Consensus 81 ~~~ 83 (266)
T 3p19_A 81 AEK 83 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 446
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=32.20 E-value=1.3e+02 Score=21.11 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeCH----HHHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSP----EAGSVFLEAWKE 123 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-l~~~d~IiFTS~----~aV~~f~~~l~~ 123 (262)
..+||+.-.... ...+...|+..|+.+... .+.++....+.. -..+|.|++--. ++.+ ++..+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~-~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTA--------SSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD-ILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH-HHHHHHH
Confidence 468998876543 456888899899765422 233333344432 357898887532 3443 3444544
Q ss_pred cCCCCcEEEEeC-hhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 124 AGTPNVRIGVVG-AGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 124 ~~~~~~~i~aVG-~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
.. ++.+|+.+. .... ..+.+. |.. ++..+..+.+.|...+..
T Consensus 74 ~~-~~~~ii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~ 119 (143)
T 3jte_A 74 IT-PHMAVIILTGHGDLDNAILAMKE------GAF-EYLRKPVTAQDLSIAINN 119 (143)
T ss_dssp HC-TTCEEEEEECTTCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHH
T ss_pred hC-CCCeEEEEECCCCHHHHHHHHHh------Ccc-eeEeCCCCHHHHHHHHHH
Confidence 43 355665544 3333 333444 665 356677888888877754
No 447
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=32.17 E-value=36 Score=29.20 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=46.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~---a----V~~f~~~l 121 (262)
.|.+|+++.+......+...++..|+++..+|+-.. ...+.+.+++.+++-.+...|++++++ + ++.+.+.+
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 160 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALV 160 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHH
Confidence 467899888754333345555667999988886321 112456677776433456788888865 2 35555555
Q ss_pred HHc
Q 024773 122 KEA 124 (262)
Q Consensus 122 ~~~ 124 (262)
.++
T Consensus 161 ~~~ 163 (392)
T 2z9v_A 161 SAH 163 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 448
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=31.76 E-value=62 Score=26.87 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=50.9
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 024773 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (262)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IiFTS~~aV~~f~~ 119 (262)
++|.+...... ..-+.+.|++.|.++.. .+.. ..+. +.+.+.+..-.+.|+|+.++-.....+++
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 199 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILND--EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQAL 199 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEEC--SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHH
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecC--CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHH
Confidence 57776655421 12355677777877653 1111 1121 23444554445789999988766667778
Q ss_pred HHHHcCCC-CcEEEEeChhH
Q 024773 120 AWKEAGTP-NVRIGVVGAGT 138 (262)
Q Consensus 120 ~l~~~~~~-~~~i~aVG~~T 138 (262)
.+.+.+.+ ++.|+..+...
T Consensus 200 al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 200 VVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp HHHHTTCTTTSEEEEECCCH
T ss_pred HHHHcCCCCCeEEEEeCCCH
Confidence 88887753 68888887654
No 449
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=31.74 E-value=61 Score=27.18 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=50.9
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.||++|||... .-...+++.|.+.|++|...- +.. ...+.+.......+...++. +|+..+++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTY--LSE--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEe--CCh--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 45789999999876 335679999999999976432 111 11122333332223332222 4788999998887
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 102 ~~~~~g~iD~lVnnAG 117 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVA 117 (296)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6543 32244444444
No 450
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=31.71 E-value=40 Score=28.14 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=86.8
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~l 121 (262)
.|+||.+|||....+ ...+++.|.+.|++|...-. .. ...+++.+.++..+ .+++. +|+...++.+++..
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~--~~--~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL--LE--DRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--CH--HHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC--CH--HHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHH
Confidence 478999999988764 46789999999999875321 11 01122333343332 33443 47999999998876
Q ss_pred HHc-CCCCcEEEEeC---------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC--
Q 024773 122 KEA-GTPNVRIGVVG---------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-- 189 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG---------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~-- 189 (262)
.+. +.-++-|-.-| +.|.+..++. +.+.+...-......+..|.+. .+.+|+.+.+-.+
T Consensus 79 ~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~~g~~ 149 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGIMDGVTPVAEVSDELWERV-------LAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTASIAGIR 149 (254)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGGGTC
T ss_pred HHHcCCCCEEEECCcccCCCCChhhCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEechhhcC
Confidence 553 32122222222 2344445544 2322222223344555555543 3578888876432
Q ss_pred ------------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 ------------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 ------------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..+|...|++|..+.-
T Consensus 150 ~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~P 187 (254)
T 4fn4_A 150 GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLP 187 (254)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEe
Confidence 45678888899999988764
No 451
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=31.68 E-value=2.1e+02 Score=23.96 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=32.9
Q ss_pred CCccEEEEEccCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHHHHHHcC--CCCEEEEeCH
Q 024773 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--SIPVVAVASP 237 (262)
Q Consensus 176 ~~g~~vL~~~g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~~~~~l~--~~d~ivFtS~ 237 (262)
.+|.+++++....-.......+...|.++..+.+-... ....+++.+.+. +..+|+++++
T Consensus 96 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~~v~~~~~ 157 (393)
T 3kgw_A 96 EPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGE--HYTLQEVEEGLAQHKPVLLFLVHG 157 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESE
T ss_pred CCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCC--CCCHHHHHHHHhhCCCcEEEEecc
Confidence 45677887754432122355666778877766653221 123344444442 6677777776
No 452
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=31.66 E-value=1.8e+02 Score=22.76 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=62.6
Q ss_pred CCCCeEEEeCCCCC---hHHHHHHHHhCCCcEEEeceEEeeeCCCchH----HHHHHhcCCCcc--EEEEeCHHHHHHHH
Q 024773 48 NSNPKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHAQGPDTDR----LSSVLNADTIFD--WIIITSPEAGSVFL 118 (262)
Q Consensus 48 l~g~~VLitR~~~~---~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~----l~~~l~~l~~~d--~IiFTS~~aV~~f~ 118 (262)
..+++|.|-....+ .+.+.+.|++.|++|+.+-++...+. |+.. +.+.+ .-+++| .+|.-|..++.-..
T Consensus 18 ~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V-~~g~~d~GIliCGTGiG~sIaA 95 (169)
T 3ph3_A 18 GSHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAV-KSGECDRGIVICGTGLGISIAA 95 (169)
T ss_dssp ---CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHH-HTTSSSEEEEEESSSHHHHHHH
T ss_pred CCCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHH-HcCCCCEEEEEcCCcHHHHHHh
Confidence 34567777754432 34677888999999999988765543 4432 22223 224444 55556666654433
Q ss_pred HHHHHcCCCCcEEE-EeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhh
Q 024773 119 EAWKEAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (262)
Q Consensus 119 ~~l~~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~ 172 (262)
+ ..++++.+ |--+.+|+..+++- .-++...+......+++..|.
T Consensus 96 N-----Kv~GIRAAlc~d~~sA~~aR~hN-----nANVL~lG~Rvig~~lA~~Iv 140 (169)
T 3ph3_A 96 N-----KVPGIRAAVCTNSYMARMSREHN-----DANILALGERVVGLDLALDIV 140 (169)
T ss_dssp T-----TSTTCCEEECSSHHHHHHHHHTT-----CCSEEEEETTTSCHHHHHHHH
T ss_pred h-----cCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCHHHHHHHH
Confidence 2 23455544 55667777777771 223333455555555555543
No 453
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=31.65 E-value=82 Score=27.89 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=43.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~ 116 (262)
..++|||.........+...++++|++++.+-.. ...+..|.+.+.+..+. ..+|+|+..+-.....
T Consensus 18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~-~~~d~V~~~~e~~~~~ 96 (433)
T 2dwc_A 18 SAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVER-EKPDAIIPEIEAINLD 96 (433)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHH-HCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHH-cCCCEEEECcccCCHH
Confidence 3568999976544677899999999998765321 01112233344444322 4689888866433223
Q ss_pred HHHHHHHcC
Q 024773 117 FLEAWKEAG 125 (262)
Q Consensus 117 f~~~l~~~~ 125 (262)
+...++..+
T Consensus 97 ~~~~l~~~g 105 (433)
T 2dwc_A 97 ALFEFEKDG 105 (433)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 344444443
No 454
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=31.63 E-value=1.4e+02 Score=21.31 Aligned_cols=110 Identities=11% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCeEEEeCCCCCh-HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGKN-GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~~-~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~~~ 124 (262)
+++||+...+... ..+...|+ .|+++... .+..+....+.....||.|++-- .++.+. +..+.+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~-~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-FDFEVTTC--------ESGPEALACIKKSDPFSVIMVDMRMPGMEGTEV-IQKARLI 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-TTSEEEEE--------SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHH-HHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-cCceEEEe--------CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHH-HHHHHhc
Confidence 5789999765433 44566664 47654422 23344444554444579988752 344443 3344443
Q ss_pred CCCCcEEEEe-ChhHHHHHHHhhhhcCCC-CceeecCCCCCHHHHHHHhhhC
Q 024773 125 GTPNVRIGVV-GAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 125 ~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G-~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
. .+.+++++ +....+...+.+.. | .. ++..+..+.+.|...+...
T Consensus 74 ~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~L~~~i~~~ 120 (151)
T 3kcn_A 74 S-PNSVYLMLTGNQDLTTAMEAVNE---GQVF-RFLNKPCQMSDIKAAINAG 120 (151)
T ss_dssp C-SSCEEEEEECGGGHHHHHHHHHH---TCCS-EEEESSCCHHHHHHHHHHH
T ss_pred C-CCcEEEEEECCCCHHHHHHHHHc---CCee-EEEcCCCCHHHHHHHHHHH
Confidence 3 35565554 44443333322111 5 54 4667778889998877643
No 455
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=31.60 E-value=48 Score=27.07 Aligned_cols=85 Identities=9% Similarity=0.084 Sum_probs=49.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|+..- +.. ...+++...+...+ .+..+ +|+..+++.+++.
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITG--RTK--EKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHH
Confidence 3577999999988754 4678999999999876421 110 01122222232211 12322 3788899988887
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 77 ~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 77 IDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 6543 32244444555
No 456
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.52 E-value=1.6e+02 Score=22.03 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT----S~~aV~~f~~~l 121 (262)
.+.+++||+.-.... ...+...|+..|+.|... .+..+....+ .-..+|.|+.- ..++.+.. ..+
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~~~-~~l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA--------HNKDEALKLA-GAEKFEFITVXLHLGNDSGLSLI-APL 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHH-TTSCCSEEEECSEETTEESHHHH-HHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-hhCCCCEEEEeccCCCccHHHHH-HHH
Confidence 456789999976543 456778888888754322 2333333444 33568888773 22344433 334
Q ss_pred HHcCCCCcEEEEe-ChhH---HHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC
Q 024773 122 KEAGTPNVRIGVV-GAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (262)
Q Consensus 122 ~~~~~~~~~i~aV-G~~T---a~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~ 174 (262)
.+.. .+.+|+.+ |... ...+.+. |.. ++..+..+.+.|...+...
T Consensus 74 ~~~~-~~~~ii~lt~~~~~~~~~~a~~~------Ga~-~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 74 CDLQ-PDARILVLTGYASIATAVQAVKD------GAD-NYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHHC-TTCEEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHTSTT
T ss_pred HhcC-CCCCEEEEeCCCCHHHHHHHHHh------CHH-HheeCCCCHHHHHHHHHHH
Confidence 4332 35666554 4332 3344455 765 4667788999999887643
No 457
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=31.46 E-value=43 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.||+||||..... ...+++.|.+.|++|...
T Consensus 24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~ 58 (266)
T 3uxy_A 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVA 58 (266)
T ss_dssp --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEC
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999988764 467999999999988754
No 458
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=31.42 E-value=2.1e+02 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=30.9
Q ss_pred HHHHHhcC---CCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEeChhH
Q 024773 93 LSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 93 l~~~l~~l---~~~d~IiFTS~~aV~~f~~~l~~~~~---~~~~i~aVG~~T 138 (262)
+...+... ...|+|+.++-...-..++.+.+.+. +++.|+..+...
T Consensus 179 ~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 230 (306)
T 2vk2_A 179 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 230 (306)
T ss_dssp HHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCH
T ss_pred HHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCCH
Confidence 44445433 46888888887766777777877775 367777776543
No 459
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=31.39 E-value=54 Score=26.55 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=43.1
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~l 121 (262)
.+.|+++|||..... ...+++.|.+.|++|...- +. + ...+++.+.+...+ .+..+ +++..+++.+++.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~--r~-~-~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAA--RR-V-EKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE--SC-H-HHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE--CC-H-HHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHH
Confidence 467999999988764 4678999999999876431 10 0 01122222232221 23333 37788888888766
Q ss_pred HH
Q 024773 122 KE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 79 ~~ 80 (247)
T 2jah_A 79 VE 80 (247)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 460
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=31.31 E-value=71 Score=26.56 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe--------CHHHHHHHHHHHHHcCCCCcEEEEeC
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT--------SPEAGSVFLEAWKEAGTPNVRIGVVG 135 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFT--------S~~aV~~f~~~l~~~~~~~~~i~aVG 135 (262)
.+.+.|++.|++|....+-+.....+. . .+++||.|||- +...+++|.+.+.. +..++++.
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~~----~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgiH 104 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLTD----E---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVLH 104 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCH----H---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEEG
T ss_pred HHHHHHhhCCcEEEEEeccCccccCCH----h---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEEc
Confidence 347889999988876432111111111 1 24789999994 35666676666653 45667665
Q ss_pred hh
Q 024773 136 AG 137 (262)
Q Consensus 136 ~~ 137 (262)
.+
T Consensus 105 ~a 106 (252)
T 1t0b_A 105 SG 106 (252)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 461
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=31.28 E-value=89 Score=25.91 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=33.6
Q ss_pred EEEEEc--cCCChhhHHHHHHhC-CCeeeEEeeeccccCCCChHHHHHHcCCCCEEE-EeCHHHHHHHHHHhccc
Q 024773 180 TVLYPA--SAKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSWVNLISDT 250 (262)
Q Consensus 180 ~vL~~~--g~~~~~~L~~~L~~~-G~~v~~i~vY~~~~~~~~~~~~~~~l~~~d~iv-FtS~s~~~~~~~~~~~~ 250 (262)
||.+.. |.-++ .+.+.+.+. |+++ +.+++.. ...+++.. ...|+++ ||+|.++...++.+.++
T Consensus 2 kV~V~Ga~G~mG~-~i~~~~~~~~~~el--va~~d~~---~dl~~~~~--~~~DvvIDfT~p~a~~~~~~~a~~~ 68 (245)
T 1p9l_A 2 RVGVLGAKGKVGT-TMVRAVAAADDLTL--SAELDAG---DPLSLLTD--GNTEVVIDFTHPDVVMGNLEFLIDN 68 (245)
T ss_dssp EEEEETTTSHHHH-HHHHHHHHCTTCEE--EEEECTT---CCTHHHHH--TTCCEEEECSCTTTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHH-HHHHHHHhCCCCEE--EEEEccC---CCHHHHhc--cCCcEEEEccChHHHHHHHHHHHHc
Confidence 455554 33334 345555433 6555 3444432 12223322 3678888 88888887777665543
No 462
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=31.11 E-value=32 Score=28.50 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=51.0
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEe---eeCCC--c--hHHHHHHhcCCCccEEEEeCHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQH---AQGPD--T--DRLSSVLNADTIFDWIIITSPEAGS 115 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~---~~~~~--~--~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (262)
.++|.+..+... ..-+.+.|+++|..+....++.. ....+ . +.+.+.+......|+|+.++-...-
T Consensus 131 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~ 210 (301)
T 3miz_A 131 HRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAI 210 (301)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHH
T ss_pred CCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence 346666544322 13356677788876432222222 11111 2 4455666445678999988888777
Q ss_pred HHHHHHHHcCCC---CcEEEEeChh
Q 024773 116 VFLEAWKEAGTP---NVRIGVVGAG 137 (262)
Q Consensus 116 ~f~~~l~~~~~~---~~~i~aVG~~ 137 (262)
.+++.+.+.+.. ++.|+..+..
T Consensus 211 g~~~al~~~g~~vP~di~vig~D~~ 235 (301)
T 3miz_A 211 QIYIAAMALGLRIPQDVSIVGFDDF 235 (301)
T ss_dssp HHHHHHHTTTCCHHHHCEEECSBCC
T ss_pred HHHHHHHHcCCCCCCCeeEEEeCCc
Confidence 788888887763 5566666554
No 463
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=31.10 E-value=38 Score=28.65 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=52.5
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 024773 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (262)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~ 120 (262)
.++|.+..+... ..-+.+.|+++|..+.....+......+ .+.+...+......|+|+.++-...-..++.
T Consensus 181 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~a 260 (338)
T 3dbi_A 181 HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKA 260 (338)
T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHH
Confidence 346776654322 1236677888887654322222111100 1234455545567899998888777777888
Q ss_pred HHHcCC---CCcEEEEeChhH
Q 024773 121 WKEAGT---PNVRIGVVGAGT 138 (262)
Q Consensus 121 l~~~~~---~~~~i~aVG~~T 138 (262)
+.+.|. +++.|+..+...
T Consensus 261 l~~~G~~vP~di~vvg~D~~~ 281 (338)
T 3dbi_A 261 LHERGVAVPEQVSVIGFDDIA 281 (338)
T ss_dssp HHHTTCCTTTTCEEEEESCCT
T ss_pred HHHcCCCCCCCeEEEEECChH
Confidence 888775 377788777543
No 464
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=31.00 E-value=58 Score=27.22 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
..+.||+||||..... ...+++.|.+.|++|+..-. ... ...+.+...+... ..+..+ +++..+++.+++.
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r--~~~-~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYL--DEE-GDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--SCH-HHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC--Cch-HHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHH
Confidence 4688999999988764 46799999999998764311 000 0012222223222 233333 3788888888876
Q ss_pred HHHc-CCCCcEEEEeCh---------hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC-
Q 024773 121 WKEA-GTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA- 189 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~- 189 (262)
+.+. +.-+.-|.+.|- .+.+.+++. +.+.+. ..-.+.+.+.....++.+|+++.+..+
T Consensus 119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~-------~~vN~~----g~~~l~~~~~~~~~~~g~iv~isS~~~~ 187 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKT-------FRINIF----SYFHVTKAALSHLKQGDVIINTASIVAY 187 (291)
T ss_dssp HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHH-------HHHHTH----HHHHHHHHHHTTCCTTCEEEEECCTHHH
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHH-------HHHHhH----HHHHHHHHHHHHHhhCCEEEEEechHhc
Confidence 6543 222333333331 134444444 222221 112233333333334568888876432
Q ss_pred -------------------hhhHHHHHHhCCCeeeEEe
Q 024773 190 -------------------SNEIEEGLSNRGFEVVRLN 208 (262)
Q Consensus 190 -------------------~~~L~~~L~~~G~~v~~i~ 208 (262)
...|..++...|++|..+.
T Consensus 188 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~ 225 (291)
T 3ijr_A 188 EGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVA 225 (291)
T ss_dssp HCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEe
Confidence 1245556666788776554
No 465
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=30.99 E-value=49 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEE
Q 024773 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (262)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (262)
...+.||+||||..... ...+++.|.+.|++|..
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~ 50 (253)
T 2nm0_A 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAI 50 (253)
T ss_dssp ----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 35677999999988764 46789999999998764
No 466
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=30.74 E-value=98 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=12.0
Q ss_pred EEEEccCCChhhHHHHHHhCCCee
Q 024773 181 VLYPASAKASNEIEEGLSNRGFEV 204 (262)
Q Consensus 181 vL~~~g~~~~~~L~~~L~~~G~~v 204 (262)
++|......-+.+.+.|+..|+.+
T Consensus 50 lVF~~~~~~~~~l~~~L~~~g~~~ 73 (185)
T 2jgn_A 50 LVFVETKKGADSLEDFLYHEGYAC 73 (185)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCce
Confidence 333333344555666666665543
No 467
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=30.62 E-value=1.4e+02 Score=20.91 Aligned_cols=112 Identities=7% Similarity=-0.037 Sum_probs=61.2
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhc-----CCCccEEEEeCH----HHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNA-----DTIFDWIIITSP----EAGSV 116 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~-----l~~~d~IiFTS~----~aV~~ 116 (262)
.+.+||+...+.. ...+...|+..|+ .+... .+..+....+.. -..+|.|++--. ++.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~- 76 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIA--------KSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIE- 76 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEE--------SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEE--------CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHH-
Confidence 3568998876543 4567888888887 44322 233334444533 156898887532 3333
Q ss_pred HHHHHHHcC-CCCcEEEEeCh-hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 117 FLEAWKEAG-TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 117 f~~~l~~~~-~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+++.+.+.. ..+++++++.. ...+...+.+. .|.. ++..+..+.+.|.+.+..
T Consensus 77 ~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~---~g~~-~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 77 FLKELRDDSSFTDIEVFVLTAAYTSKDKLAFES---LNIR-GHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp HHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTT---TTCC-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHHcCccccCCcEEEEeCCCCHHHHHHHHh---cCCC-eEEECCCCHHHHHHHHHH
Confidence 344444332 14667666543 22333332211 1654 466777888888877653
No 468
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=30.55 E-value=33 Score=28.08 Aligned_cols=53 Identities=17% Similarity=0.042 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHH
Q 024773 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK 122 (262)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV~~f~~~l~ 122 (262)
.+.+.+++.|.+|..+-+.+ ..| +.+....+..+|.|||.+| ..++.|++.+-
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~---~~D---v~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~ 110 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQ---GYD---IESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEVF 110 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGG---CCC---HHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEEECCC---ccC---HHHHHHHHHhCCEEEEECChHhccCCHHHHHHHHHHH
Confidence 34455667799988765543 123 2333445577999999887 34556665543
No 469
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=30.48 E-value=67 Score=25.75 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Cc-cEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IF-DWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~-d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.|++||||..... ...+++.|.+.|++|..+- + +.+.++.....++ .. .++. +++..+++.+++.
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~--r-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILID--R-----EAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S-----CHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe--C-----CHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence 4577999999988764 4679999999999876531 1 1122222221111 11 1111 3677788877776
Q ss_pred HHHcCCCCcEEEEeC
Q 024773 121 WKEAGTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~~~~~~~i~aVG 135 (262)
+.+.+.-+.-|.+.|
T Consensus 80 ~~~~~~id~li~~Ag 94 (254)
T 2wsb_A 80 AEAVAPVSILVNSAG 94 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhhCCCcEEEECCc
Confidence 554322233444444
No 470
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=30.46 E-value=1.9e+02 Score=23.76 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=76.8
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHHHHHHc
Q 024773 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLEAWKEA 124 (262)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiF----TS~~aV~~f~~~l~~~ 124 (262)
+|+||||....+ ...+++.|.+.|++|...-. +.+.+.+..+... +...+ |+..+++.+++...+.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~-------~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDI-------DEKRSADFAKERP--NLFYFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHTTCT--TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC-------CHHHHHHHHHhcC--CEEEEEecCCCHHHHHHHHHHHHHH
Confidence 589999988764 46799999999999875421 2233333332333 33333 7899999998876543
Q ss_pred -CCCCcEEEEeC--------hhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCC------
Q 024773 125 -GTPNVRIGVVG--------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------ 189 (262)
Q Consensus 125 -~~~~~~i~aVG--------~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~------ 189 (262)
+.-++-|-..| +.+.+..++. +.+.+...-.....++..|.+ .+.+++.+.+-.+
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~-------~~vNl~g~~~~~~~~~~~m~~---~~G~IInisS~~~~~~~~~ 142 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYI-------LSVGLKAPYELSRLCRDELIK---NKGRIINIASTRAFQSEPD 142 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHH-------HHHHTHHHHHHHHHHHHHHHH---TTCEEEEECCGGGTSCCTT
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHH-------HHHHhHHHHHHHHHHHHHHhh---cCCcEEEEeecccccCCCC
Confidence 32122222222 2234444444 222222111223334444443 2367777776432
Q ss_pred --------------hhhHHHHHHhCCCeeeEEee
Q 024773 190 --------------SNEIEEGLSNRGFEVVRLNT 209 (262)
Q Consensus 190 --------------~~~L~~~L~~~G~~v~~i~v 209 (262)
...|..+|.. |++|..+.-
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~-~IrVN~I~P 175 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGP-DVLVNCIAP 175 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEec
Confidence 3456667754 888877654
No 471
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=30.37 E-value=48 Score=25.33 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=21.9
Q ss_pred CCCccEEEEeCHHH--------HHHHHHHHHHc---CCCCcEEEEeC
Q 024773 100 DTIFDWIIITSPEA--------GSVFLEAWKEA---GTPNVRIGVVG 135 (262)
Q Consensus 100 l~~~d~IiFTS~~a--------V~~f~~~l~~~---~~~~~~i~aVG 135 (262)
+..+|.|+|-++.- ++.|++.+... ...+.++++.|
T Consensus 54 l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~avfg 100 (167)
T 1ykg_A 54 IASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFS 100 (167)
T ss_dssp GGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEEEEE
T ss_pred hccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccCCCEEEEEe
Confidence 45688888866543 57788777542 23455665554
No 472
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=30.36 E-value=1.5e+02 Score=27.22 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH-HHcCCCCcEEEEeC-hhHHH
Q 024773 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW-KEAGTPNVRIGVVG-AGTAS 140 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l-~~~~~~~~~i~aVG-~~Ta~ 140 (262)
.++.+.|++.|+++..+-.-....-. +.++.+.+.-+..++..-....+.+ ++.+.+-+...-+| ..|.+
T Consensus 186 ~eik~lL~~~Gi~v~~~~~gg~~~~e--------i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~~T~~ 257 (511)
T 2xdq_B 186 RELKQLMADLGIQVNLVIPAAATVHD--------LQRLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVVETAR 257 (511)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCCTTT--------GGGGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEECCcCcHHH--------HHhhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHHHHHH
Q ss_pred HHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhC--------------CCCccEEEEEccCCChhhHHHHH-HhCCCeee
Q 024773 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------------GKKKCTVLYPASAKASNEIEEGL-SNRGFEVV 205 (262)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~--------------~~~g~~vL~~~g~~~~~~L~~~L-~~~G~~v~ 205 (262)
-|++. +--.....-....+.+++.=... ...|+|+++..+....-.+...| .+.|++|.
T Consensus 258 ~L~~i------a~~~g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv 331 (511)
T 2xdq_B 258 CIRAI------QGVLNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVV 331 (511)
T ss_dssp HHHHH------HHHHHTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHH------HHHhCCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCCEEE
Q ss_pred EEeeeccccCCCChHHHHHHcC-CCCEEEEe-CHHHHHHHHHHhc
Q 024773 206 RLNTYTTEPVHHVDQTVLKQAL-SIPVVAVA-SPSAVRSWVNLIS 248 (262)
Q Consensus 206 ~i~vY~~~~~~~~~~~~~~~l~-~~d~ivFt-S~s~~~~~~~~~~ 248 (262)
.+-.|... ..+...+.+. ..+-+++. ....++.+++..+
T Consensus 332 ~~gt~~~~----~~~~~~~~l~~~~~~v~~~~D~~el~~~i~~~~ 372 (511)
T 2xdq_B 332 WAGTYCKY----DADWFRAEVAGFCDEVLITDDHTVVGDAIARVE 372 (511)
T ss_dssp EEEESCGG----GHHHHHHHHTTTSSEEEECCCHHHHHHHHHHHC
T ss_pred EeecCCCC----chHHHHHHHHhcCCcEEEeCCHHHHHHHHHhcC
No 473
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=30.25 E-value=1.3e+02 Score=25.58 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-----EeeeCCCchHHHHHHhcCCCccEEEEeCHHH----------
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----QHAQGPDTDRLSSVLNADTIFDWIIITSPEA---------- 113 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-----~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~a---------- 113 (262)
.|.+|++..+... .+...++..|+++..+|+- ......+.+.+++.+.. +...|++++++.
T Consensus 125 ~gd~vl~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~v~~~~p~nptG~~~~~~~ 200 (407)
T 3nra_A 125 RGDKVAIVQPDYF--ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNNPAGVVYSAEE 200 (407)
T ss_dssp TTCEEEEEESCCT--HHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT--TCCEEEEESSCTTTCCCCCHHH
T ss_pred CCCEEEEcCCccc--chHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh--CCcEEEEcCCCCCCCcccCHHH
Q ss_pred HHHHHHHHHHcCC
Q 024773 114 GSVFLEAWKEAGT 126 (262)
Q Consensus 114 V~~f~~~l~~~~~ 126 (262)
++.+.+.+.+++.
T Consensus 201 l~~i~~~~~~~~~ 213 (407)
T 3nra_A 201 IGQIAALAARYGA 213 (407)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
No 474
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=30.07 E-value=64 Score=26.23 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--C-CccEEE--EeCHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--T-IFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~-~~d~Ii--FTS~~aV~~f~~~ 120 (262)
.+.||+||||..... ...+++.|.+.|++|...- + .+ ...+++.+.+... + ...++. +++..+++.+++.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r-~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFS--R-NR-EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEK 79 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S-CH-HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe--C-CH-HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHH
Confidence 467999999988754 4678999999999876431 1 00 0011122222111 1 222222 3678888888776
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. + -+.-|.+.|
T Consensus 80 ~~~~~g-id~lv~~Ag 94 (260)
T 2z1n_A 80 ARDLGG-ADILVYSTG 94 (260)
T ss_dssp HHHTTC-CSEEEECCC
T ss_pred HHHhcC-CCEEEECCC
Confidence 6543 3 233444444
No 475
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=30.05 E-value=57 Score=26.70 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE----EeCHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII----ITSPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~Ii----FTS~~aV~~f~~ 119 (262)
..+.||++|||..... ...+++.|.+.|++|...- +.. ...+++.+.+... ...+..+ +++..+++.+++
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 84 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVD--VSS--EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVT 84 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence 3478999999988764 4678999999999876431 110 0111122222111 1122322 367888888877
Q ss_pred HHHH
Q 024773 120 AWKE 123 (262)
Q Consensus 120 ~l~~ 123 (262)
.+.+
T Consensus 85 ~~~~ 88 (267)
T 1iy8_A 85 ATTE 88 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 476
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=29.99 E-value=78 Score=22.86 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhh
Q 024773 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (262)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~ 173 (262)
+.+...+.+-+-+..||+...+.|++. |+++... ...+.+..++.+.+
T Consensus 59 ~~l~~~gv~~vi~~~iG~~a~~~L~~~------GI~v~~~-~~~~i~eal~~~~~ 106 (124)
T 1eo1_A 59 QIIANNGVKAVIASSPGPNAFEVLNEL------GIKIYRA-TGTSVEENLKLFTE 106 (124)
T ss_dssp HHHHHTTCCEEEECCSSHHHHHHHHHH------TCEEEEC-CSCCHHHHHHHHHT
T ss_pred HHHHHCCCCEEEECCcCHHHHHHHHHC------CCEEEEc-CCCCHHHHHHHHHh
Confidence 334445544444445899999999999 9998543 44677777776653
No 477
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=29.99 E-value=55 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.+.||+||||..... ...+++.|.+.|++|+.+
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 40 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILF 40 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 578999999988764 467999999999998754
No 478
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=29.98 E-value=32 Score=29.05 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEEEc--cCCChhhHHHHHHhCCCeeeEEeeeccccCCCChHH-----------------HHHHcCCCCEEE-EeCHHH
Q 024773 180 TVLYPA--SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT-----------------VLKQALSIPVVA-VASPSA 239 (262)
Q Consensus 180 ~vL~~~--g~~~~~~L~~~L~~~G~~v~~i~vY~~~~~~~~~~~-----------------~~~~l~~~d~iv-FtS~s~ 239 (262)
||.+.. |.-++..+...+...|+++ +.+++.........+ +.+.+..+|+|+ ||+|.+
T Consensus 7 kV~V~Ga~G~mG~~~~~~~~~~~~~el--va~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p~~ 84 (273)
T 1dih_A 7 RVAIAGAGGRMGRQLIQAALALEGVQL--GAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEG 84 (273)
T ss_dssp EEEETTTTSHHHHHHHHHHHHSTTEEC--CCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEE--EEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCChHH
Q ss_pred HHHHHHHhcccCCCCCeEEE
Q 024773 240 VRSWVNLISDTEQWSNSVAC 259 (262)
Q Consensus 240 ~~~~~~~~~~~~~~~~~i~~ 259 (262)
+...+..+-+. ++++++
T Consensus 85 ~~~~~~~a~~~---G~~vVi 101 (273)
T 1dih_A 85 TLNHLAFCRQH---GKGMVI 101 (273)
T ss_dssp HHHHHHHHHHT---TCEEEE
T ss_pred HHHHHHHHHhC---CCCEEE
No 479
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=29.82 E-value=1.2e+02 Score=26.28 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=22.2
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEe
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~ 79 (262)
++|+|..+......+...+++.|++++.+
T Consensus 2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~ 30 (380)
T 3ax6_A 2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVL 30 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 57888876544677888899999987654
No 480
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Probab=29.82 E-value=62 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCC--CC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRER--GK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~--~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.||++|||... .. ...+++.|.+.|++|+..
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~ 40 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG 40 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEe
Confidence 35779999999875 33 578999999999988653
No 481
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=29.70 E-value=1.3e+02 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=23.7
Q ss_pred cEEEEEccCCChhhHHHHHHhCCCeeeE
Q 024773 179 CTVLYPASAKASNEIEEGLSNRGFEVVR 206 (262)
Q Consensus 179 ~~vL~~~g~~~~~~L~~~L~~~G~~v~~ 206 (262)
...|++.+..+.+.+.+.|.++|+.+.+
T Consensus 118 ~~~lIlqp~~~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 118 VKTLVLQPNNREDDLRKWLAANDFEIVA 145 (230)
T ss_dssp CCEEEEEESSCHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHCCCEEEE
Confidence 4467788899999999999999998665
No 482
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=29.61 E-value=25 Score=27.05 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.2
Q ss_pred HHHHHHhCCCeeeEEeeecccc
Q 024773 193 IEEGLSNRGFEVVRLNTYTTEP 214 (262)
Q Consensus 193 L~~~L~~~G~~v~~i~vY~~~~ 214 (262)
+.+.+.+...-|.-.++|....
T Consensus 57 ~~~~i~~aD~ii~~tP~y~~~~ 78 (174)
T 3gfs_A 57 LKQRVTKADAIVLLSPEYHSGM 78 (174)
T ss_dssp HHHHHHHCSSEEEEEECSSSSC
T ss_pred HHHHHHHCCEEEEEcCCcCCCC
Confidence 3445555555666666665433
No 483
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=29.59 E-value=2e+02 Score=27.85 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=50.8
Q ss_pred CeEEEeCCCC--C-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHH
Q 024773 51 PKVVVTRERG--K-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAG 114 (262)
Q Consensus 51 ~~VLitR~~~--~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~-------~aV 114 (262)
++|||...+. - ...+...|++.|++|... .+.++....+..-..+|+||+.=- ..-
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a--------~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G 72 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKS--------TSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNV 72 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHhcCCCCcEEEEeCCCCcccccccH
Confidence 4788887764 3 578899999999988754 233333444433345999998644 111
Q ss_pred HHHHHHHHHcCCCCcEEEEeChhHH
Q 024773 115 SVFLEAWKEAGTPNVRIGVVGAGTA 139 (262)
Q Consensus 115 ~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (262)
..+++.+.+.+ .+++|+.+.....
T Consensus 73 ~~ll~~iR~~~-~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 73 RQLIGKLHERQ-QNVPVFLLGDREK 96 (755)
T ss_dssp HHHHHHHHHHS-TTCCEEEEECHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEecCCc
Confidence 23555565553 3688888877643
No 484
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=29.58 E-value=83 Score=25.91 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEE--EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWII--ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~Ii--FTS~~aV~~f~~~ 120 (262)
..+.||++|||..... ...+++.|.+.|++|+..- +.. ...++....+.. -....++. +|+..+++.+++.
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 98 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIAS--RSL--PRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQ 98 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEE--SCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4578999999988764 4678999999999876431 110 001111112211 11222222 4788889888876
Q ss_pred HHHc-CCCCcEEEEeC
Q 024773 121 WKEA-GTPNVRIGVVG 135 (262)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (262)
+.+. +.-+.-|.+.|
T Consensus 99 ~~~~~g~id~lv~nAg 114 (277)
T 4fc7_A 99 ALKEFGRIDILINCAA 114 (277)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCc
Confidence 6543 32234444444
No 485
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=29.41 E-value=60 Score=27.28 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=32.7
Q ss_pred CccEEEEeCHHHHHH----HHHHHHHcCCCCcEEEEeChhH----HHHHHHhhhhcCCCCceeecCC
Q 024773 102 IFDWIIITSPEAGSV----FLEAWKEAGTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPS 160 (262)
Q Consensus 102 ~~d~IiFTS~~aV~~----f~~~l~~~~~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~p~ 160 (262)
+.|.+||.|||++-- --+.+.. .+++.+.||... .+++++. |+--.+++.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~kd~l~~~------g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLKVKDEMEEQ------GLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGGGHHHHHHT------TCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchhhHHHHHhc------CCcEEEEec
Confidence 689999999997632 2222333 256666665444 7888888 886655543
No 486
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=29.39 E-value=57 Score=22.93 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEE
Q 024773 51 PKVVVTRERGKNGKLIKALAKHRIDCLE 78 (262)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~ 78 (262)
+-|++++....+...+..|++.|++++.
T Consensus 58 ~ivv~C~~G~rS~~aa~~L~~~G~~~~~ 85 (103)
T 3iwh_A 58 IYYIVCAGGVRSAKVVEYLEANGIDAVN 85 (103)
T ss_dssp EEEEECSSSSHHHHHHHHHHTTTCEEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence 3455666655667788899999997653
No 487
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.33 E-value=1.4e+02 Score=20.71 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=60.6
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 024773 49 SNPKVVVTRERGK-NGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (262)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS----~~aV~~f~~~l~ 122 (262)
..++||+...+.. ...+...|++.| +++.... +.++....+ .-..+|.|+.-. .++.+ ++..+.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~g~~-~~~~l~ 82 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSE--------TDDFLKGPP-ADTRPGIVILDLGGGDLLGKP-GIVEAR 82 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEEC--------GGGGGGCCC-TTCCCSEEEEEEETTGGGGST-THHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEec--------cHHHHHHHH-hccCCCEEEEeCCCCCchHHH-HHHHHH
Confidence 3568999976543 456888899888 7655332 111111112 225688887742 23333 333444
Q ss_pred HcCCCCcEEEEe-ChhHH---HHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCC
Q 024773 123 EAGTPNVRIGVV-GAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (262)
Q Consensus 123 ~~~~~~~~i~aV-G~~Ta---~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~ 175 (262)
+... +.+++.+ |.... ..+.+. |.. ++..+..+.+.|...+....
T Consensus 83 ~~~~-~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 83 ALWA-TVPLIAVSDELTSEQTRVLVRM------NAS-DWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp GGGT-TCCEEEEESCCCHHHHHHHHHT------TCS-EEEESSCCHHHHHHHHHHTC
T ss_pred hhCC-CCcEEEEeCCCCHHHHHHHHHc------CcH-hhccCCCCHHHHHHHHHHHh
Confidence 4332 4555544 43333 333345 665 46677789999988876543
No 488
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=29.28 E-value=61 Score=26.23 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=49.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l 121 (262)
..+.|++||||..... ...+++.|.+.|++|+.+- .+.+.+++....++ ....+. +|+...++.+++.+
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVD-------RDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAA 77 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc-------CCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH
Confidence 4578999999988765 4689999999999876431 12222333322222 222222 37888888888766
Q ss_pred HHc-CCCCcEEEEeC
Q 024773 122 KEA-GTPNVRIGVVG 135 (262)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (262)
.+. +.-+.-|.+.|
T Consensus 78 ~~~~g~id~li~~Ag 92 (261)
T 3n74_A 78 LSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEECCc
Confidence 543 22244444444
No 489
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=29.24 E-value=74 Score=26.40 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=27.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
..+.|++||||..... ...+++.|.+.|++|+.+
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 48 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIA 48 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999988654 467899999999987643
No 490
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=29.20 E-value=68 Score=26.03 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEE----eCHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIII----TSPEAGSVFL 118 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IiF----TS~~aV~~f~ 118 (262)
..+.||++|||..... ...+++.|.+.|++|+..- +.. ...+++...+... ....++.. ++..+++.++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLG--RNE--EKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLA 83 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHH
Confidence 3478999999988764 4678999999999876531 110 0111222222211 13333332 7788888888
Q ss_pred HHHHHc
Q 024773 119 EAWKEA 124 (262)
Q Consensus 119 ~~l~~~ 124 (262)
+.+.+.
T Consensus 84 ~~~~~~ 89 (252)
T 3f1l_A 84 QRIAVN 89 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876553
No 491
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=29.17 E-value=60 Score=27.00 Aligned_cols=70 Identities=11% Similarity=-0.008 Sum_probs=43.5
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHHH
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAWK 122 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--FTS~~aV~~f~~~l~ 122 (262)
.+.||++|||..... ...+++.|.+.|++|+..- .+.+.+++....++ ....+. +|+..+++.+++.+.
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCAD-------IDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEE-------SSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHH
Confidence 578999999988765 4679999999999886531 12222333322221 222221 378888888877664
Q ss_pred H
Q 024773 123 E 123 (262)
Q Consensus 123 ~ 123 (262)
+
T Consensus 99 ~ 99 (277)
T 3gvc_A 99 A 99 (277)
T ss_dssp H
T ss_pred H
Confidence 4
No 492
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=29.16 E-value=60 Score=27.43 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=26.8
Q ss_pred CCCCCCeEEEeCC---CCChHHHHHHHHhCCCcEEEe
Q 024773 46 ASNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 46 ~~l~g~~VLitR~---~~~~~~l~~~L~~~G~~v~~~ 79 (262)
..+.||++|||.. ..=...+++.|.+.|++|+..
T Consensus 5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~ 41 (315)
T 2o2s_A 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALG 41 (315)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEE
T ss_pred ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEE
Confidence 3478999999986 333578999999999987653
No 493
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=29.11 E-value=1.5e+02 Score=27.71 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=62.6
Q ss_pred eCHHHHHHHHHHHHHcCCCCcEEEEeChhHHHHHHHhhhhcCCCCceeecCCCCCHHHHH----HHhhhCCCCccEEEEE
Q 024773 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILA----SELPKNGKKKCTVLYP 184 (262)
Q Consensus 109 TS~~aV~~f~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~----~~l~~~~~~g~~vL~~ 184 (262)
.-+.++.-|...|.+. +..|++-|- |++.|++. |+.+..+.+--...+++ +.|... -..-+|.-
T Consensus 32 ~DK~glv~~Ak~L~~l---GfeI~ATgG-Tak~L~e~------GI~v~~V~kvTgfPEil~GRVKTLHP~--IhgGiLa~ 99 (534)
T 4ehi_A 32 SDKEGIVEFGKELENL---GFEILSTGG-TFKLLKEN------GIKVIEVSDFTKSPELFEGRVKTLHPK--IHGGILHK 99 (534)
T ss_dssp SSCTTHHHHHHHHHHT---TCEEEECHH-HHHHHHHT------TCCCEECBCCC--------------------------
T ss_pred cccccHHHHHHHHHHC---CCEEEEccH-HHHHHHHC------CCceeehhhccCCchhhCCccccCChh--hhhhhccC
Confidence 3466777777777776 578999995 99999999 99987665432222222 222110 01223322
Q ss_pred ccCCChhhHHHHHHhCCCeeeEEee---ec---cccCCCChHHHHHHcC-------------CCCEEEEeCHHHHHHHHH
Q 024773 185 ASAKASNEIEEGLSNRGFEVVRLNT---YT---TEPVHHVDQTVLKQAL-------------SIPVVAVASPSAVRSWVN 245 (262)
Q Consensus 185 ~g~~~~~~L~~~L~~~G~~v~~i~v---Y~---~~~~~~~~~~~~~~l~-------------~~d~ivFtS~s~~~~~~~ 245 (262)
+.. ++=.+.|++.|+....+.| |- |+......+++++.++ ..++.|.++|.....+++
T Consensus 100 r~~---~~h~~~l~~~~I~~iDlVvvNLYPF~~tv~~~~~~~~~iE~IDIGGpsmlRAAAKN~~~V~Vv~dp~dY~~vl~ 176 (534)
T 4ehi_A 100 RSD---ENHIKQAKENEILGIDLVCVNLYPFKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIE 176 (534)
T ss_dssp -----------------CEEESEEEEECCCHHHHHHHCCCHHHHHHTSCSSHHHHHHHHHHTTTTCEEECCGGGHHHHHH
T ss_pred CCC---HHHHHHHHHcCCCceeEEEEeCcChHHHHhcCCCHHHHHHHhhcCcHHHHHHHHHcCCCEEEECCHHHHHHHHH
Confidence 222 1222457788876444433 32 3322223344444431 468899999999999988
Q ss_pred Hhcc
Q 024773 246 LISD 249 (262)
Q Consensus 246 ~~~~ 249 (262)
.++.
T Consensus 177 ~l~~ 180 (534)
T 4ehi_A 177 TLKK 180 (534)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 494
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=29.09 E-value=77 Score=29.47 Aligned_cols=138 Identities=7% Similarity=-0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEec---------------eEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 024773 63 GKLIKALAKHRIDCLELP---------------LIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (262)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P---------------~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~~f~~~l~~~~~~ 127 (262)
.++.+.|++.|+++..+| ++ .--.. -+.++.++..+.-+..++.......+.|++..
T Consensus 238 ~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~-~ggtt-----~~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~-- 309 (523)
T 3u7q_B 238 RVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMY-AGGTT-----QEEMKDAPNALNTVLLQPWHLEKTKKFVEGTW-- 309 (523)
T ss_dssp HHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSC-CCCBC-----HHHHHHGGGSSEEEESSGGGCHHHHHHHHHTS--
T ss_pred HHHHHHHHHcCCeEEEecCchhccccccccccccc-CCCCC-----HHHHHHhhcCcEEEEEccchHHHHHHHHHHHh--
Q ss_pred CcEEEEeCh-----hHHHHHHHhhhhcCCCCceeecCCCCCHHHHHHHhhhCCCCccEEEEEccCCChhhHHHHHHhCCC
Q 024773 128 NVRIGVVGA-----GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (262)
Q Consensus 128 ~~~i~aVG~-----~Ta~~L~~~~~~~~~G~~~~~~p~~~t~e~L~~~l~~~~~~g~~vL~~~g~~~~~~L~~~L~~~G~ 202 (262)
+++.+.++. .|.+-|++..+..-.-+...+..+......-+....... .|+|+.+..+..-.-.|...|.+.|+
T Consensus 310 GiP~i~~~~PiG~~~T~~~l~~la~~~g~~~~~~i~~er~r~~~~l~d~~~~l-~GKrvaI~gd~~~~~~la~fL~elGm 388 (523)
T 3u7q_B 310 KHEVPKLNIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWL-HGKRFALWGDPDFVMGLVKFLLELGC 388 (523)
T ss_dssp CCCCCCCCCSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHHHHHHTTC
T ss_pred CCCeeecCCcCCHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECCchHHHHHHHHHHHcCC
Q ss_pred eeeEEee
Q 024773 203 EVVRLNT 209 (262)
Q Consensus 203 ~v~~i~v 209 (262)
.+..+.+
T Consensus 389 ~vv~v~~ 395 (523)
T 3u7q_B 389 EPVHILC 395 (523)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
No 495
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=28.80 E-value=66 Score=26.32 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEE----EeCHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWII----ITSPEAGSVFLE 119 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-l~~~d~Ii----FTS~~aV~~f~~ 119 (262)
..+.||++|||..... ...+++.|.+.|++|+..- +.. ...+++...+.. .+...... +|+..+++.+++
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCA--RDG--ERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE--SCH--HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe--CCH--HHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHH
Confidence 4578999999988654 4679999999999876431 110 011222222322 22222332 478899998888
Q ss_pred HHHHc-CCCCcEEEEeC
Q 024773 120 AWKEA-GTPNVRIGVVG 135 (262)
Q Consensus 120 ~l~~~-~~~~~~i~aVG 135 (262)
.+.+. +.-+.-|.+.|
T Consensus 80 ~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 80 ACERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHHHCSCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 76543 32234444444
No 496
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=28.72 E-value=57 Score=27.19 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 024773 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (262)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (262)
.|.||++|||....+ ....++.|.+.|++|...
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~ 39 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCA 39 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEE
Confidence 478999999988765 467899999999998754
No 497
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=28.72 E-value=1.1e+02 Score=25.83 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=41.1
Q ss_pred CCCC-CCCeEEEeCCCCChHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 024773 45 SASN-SNPKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (262)
Q Consensus 45 ~~~l-~g~~VLitR~~~~~~~l~-~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~aV~ 115 (262)
...+ .|++|.++.+......+. ..|++.|.+...+ ++.... ..+....+ .-+..|+++...+....
T Consensus 148 ~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv---~~~~~~-~~~~~~al-~~G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 148 FNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHF---SYHEMS-PAEMPAAL-SEHRITGYSVAEPFGAL 215 (341)
T ss_dssp CCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSE---EEEECC-GGGHHHHH-HTTSCSEEEEETTHHHH
T ss_pred HHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHe---EEEEcC-hHHHHHHH-HcCCCCEEEecCCHHHH
Confidence 4567 899999998655444444 4889999865322 222222 22333444 34789999888876543
No 498
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=28.58 E-value=57 Score=26.93 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=45.1
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 024773 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (262)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----FTS~~aV~~f~~~ 120 (262)
.++.||++|||..... ...+++.|.+.|++|...- +. .....+++...+...+ .+..+ +++..+++.+++.
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~ 99 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNY--AS-SAGAADEVVAAIAAAG-GEAFAVKADVSQESEVEALFAA 99 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE--SS-CHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe--CC-ChHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHH
Confidence 5688999999988764 4679999999999886421 10 0001122233332222 22322 4788889888877
Q ss_pred HHH
Q 024773 121 WKE 123 (262)
Q Consensus 121 l~~ 123 (262)
+.+
T Consensus 100 ~~~ 102 (269)
T 4dmm_A 100 VIE 102 (269)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 499
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=28.53 E-value=95 Score=26.02 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 024773 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (262)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IiFTS~~ 112 (262)
.|.+|+++.+.- ..+...++..|+++..+|+-.- ...+.+.+++.+.+..+...|++++++
T Consensus 91 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~ 151 (354)
T 3ly1_A 91 LEAQLVIPELTY--GDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPN 151 (354)
T ss_dssp TTCEEEEESSSC--THHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSC
T ss_pred CCCeEEECCCCc--hHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCC
Confidence 477899998764 3456777889999998887421 122556677777432467888887664
No 500
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=28.40 E-value=63 Score=25.15 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=32.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-C--CccEEEEeCHHHH
Q 024773 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (262)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~IiFTS~~aV 114 (262)
...+.+.|++.|+++... .+.+ .+.+.+.+.+... . ++|.||.|=..++
T Consensus 30 ~~~l~~~L~~~G~~v~~~---~iv~-Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 30 GHYLRDSAQEAGHHVVDK---AIVK-ENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp HHHHHHHHHHTTCEEEEE---EEEC-SCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCeEeEE---EEeC-CCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 357889999999987754 3333 2445566665432 2 4898888866554
Done!