BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024774
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
Complex With Substrate
pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
(Re-Refined)
Length = 289
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Query: 3 RDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDES 62
R+Y G + V Y++ H +QT DFV + R +YG + +M+I E +L+D+VDES
Sbjct: 33 RNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDES 91
Query: 63 DPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTF 122
DPD+D P H QTAE IRK +PD+DW HL GL+HDLGK++ L G PQWAVVGDTF
Sbjct: 92 DPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTF 148
Query: 123 PVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKE 181
PVGC S+V F++NPD +P ++TE G+Y CGL+NV+MSWGHD+Y+Y + K
Sbjct: 149 PVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKF 208
Query: 182 NKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDV 241
NK +LPS A ++IR+HSFY H Y+ L +++D++ L W++ F+K+DLY+K DV
Sbjct: 209 NKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDLYTKCPDLPDV 268
Query: 242 EKVKPYYLSLIEKYFPAKLKW 262
E ++PYY LI+KY P L W
Sbjct: 269 ESLRPYYQGLIDKYCPGTLSW 289
>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 246
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 155/245 (63%), Gaps = 13/245 (5%)
Query: 19 YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 78
Y++ H +QT DFV+ ++G + + ++ E +LL+ +VDESD D P H QTA
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65
Query: 79 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 137
E IRK +PD+DW HL GL+HDLGKVL L G PQWAVVGDTFPVGC S+V
Sbjct: 66 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 122
Query: 138 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 197
F++NPD +P ++TE G Y CGLD V+ SWGHD+Y Y V K NK +LP A + IR+H
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 182
Query: 198 SFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFP 257
SFY H Y+ L +++D+ L W+ F+K+DL DV+K++PYY LI+KY P
Sbjct: 183 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDLLP------DVDKLRPYYQGLIDKYCP 236
Query: 258 AKLKW 262
L W
Sbjct: 237 GILSW 241
>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
Length = 240
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 152/245 (62%), Gaps = 19/245 (7%)
Query: 19 YRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 78
Y++ H +QT DFV+ ++G + + ++ E +LL+ +VDES P H QTA
Sbjct: 9 YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62
Query: 79 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKY 137
E IRK +PD+DW HL GL+HDLGKVL L G PQWAVVGDTFPVGC S+V
Sbjct: 63 EGIRKAHPDKDWFHLVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDST 119
Query: 138 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 197
F++NPD +P ++TE G Y CGLD V+ SWGHD+Y Y V K NK +LP A + IR+H
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 179
Query: 198 SFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFP 257
SFY H Y+ L +++D+ L W+ F+K+DL V+K++PYY LI+KY P
Sbjct: 180 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDL---------VDKLRPYYQGLIDKYCP 230
Query: 258 AKLKW 262
L W
Sbjct: 231 GILSW 235
>pdb|1T0B|A Chain A, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|B Chain B, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|C Chain C, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|D Chain D, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|E Chain E, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|F Chain F, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|G Chain G, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|H Chain H, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
Length = 252
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 152 EYGVYSEGCGLDNVMMSWGHDDYMYL----VAKENKTTLPSAALFIIRYHSFYALHKSEA 207
E+G+ E +V++ WGH + + V + ++ L L ++ ++ H S+
Sbjct: 57 EHGLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVL-----HSGHFSKI 111
Query: 208 YKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPY 247
+K LM NLKW E K L+ + VE + PY
Sbjct: 112 FKKLMG--TTCNLKWREADEKERLWVVAPGHPIVEGIGPY 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,385,396
Number of Sequences: 62578
Number of extensions: 426590
Number of successful extensions: 982
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 8
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)