Query 024774
Match_columns 262
No_of_seqs 125 out of 208
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 3E-146 6E-151 987.7 12.6 250 11-262 4-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 3.3E-93 7.2E-98 616.9 11.0 174 3-179 29-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.2 0.00045 9.7E-09 61.0 4.6 145 48-247 4-174 (179)
4 smart00471 HDc Metal dependent 95.7 0.0078 1.7E-07 44.0 2.5 38 68-105 3-45 (124)
5 TIGR00277 HDIG uncharacterized 94.2 0.072 1.6E-06 37.7 3.8 28 168-197 50-77 (80)
6 PF01966 HD: HD domain; Inter 93.4 0.025 5.3E-07 42.2 0.3 34 71-104 2-41 (122)
7 TIGR00488 putative HD superfam 93.4 0.046 9.9E-07 45.8 1.8 37 68-104 7-47 (158)
8 COG4341 Predicted HD phosphohy 91.9 0.19 4.2E-06 44.9 3.9 102 60-223 21-122 (186)
9 PRK00106 hypothetical protein; 91.3 0.51 1.1E-05 48.1 6.6 87 49-198 332-422 (535)
10 PF08668 HDOD: HDOD domain; I 90.8 0.34 7.3E-06 40.8 4.1 126 39-198 48-194 (196)
11 TIGR01596 cas3_HD CRISPR-assoc 90.1 0.12 2.6E-06 42.4 0.7 34 71-104 2-47 (177)
12 TIGR03319 YmdA_YtgF conserved 88.5 1.2 2.7E-05 44.8 6.7 88 49-199 311-402 (514)
13 cd00077 HDc Metal dependent ph 88.4 0.19 4.1E-06 37.1 0.7 34 165-198 54-92 (145)
14 COG2316 Predicted hydrolase (H 87.5 0.55 1.2E-05 42.5 3.2 55 44-104 28-86 (212)
15 TIGR00295 conserved hypothetic 82.7 2.7 5.9E-05 35.8 5.1 29 169-199 61-89 (164)
16 PRK12705 hypothetical protein; 80.5 4 8.6E-05 41.6 6.1 93 49-205 305-401 (508)
17 COG1639 Predicted signal trans 79.4 2 4.4E-05 40.9 3.5 130 36-199 67-217 (289)
18 TIGR02621 cas3_GSU0051 CRISPR- 79.1 1.3 2.8E-05 47.5 2.4 36 69-104 675-716 (844)
19 PF15608 PELOTA_1: PELOTA RNA 71.4 9.5 0.00021 31.3 5.0 55 22-80 16-78 (100)
20 PRK12703 tRNA 2'-O-methylase; 69.3 6.1 0.00013 38.4 4.0 92 39-199 163-258 (339)
21 PRK10885 cca multifunctional t 66.9 3.1 6.7E-05 40.7 1.5 36 68-104 226-261 (409)
22 PRK07152 nadD putative nicotin 66.1 3.5 7.6E-05 38.8 1.7 28 170-198 259-287 (342)
23 COG2206 c-di-GMP phosphodieste 64.4 4.7 0.0001 38.1 2.2 48 54-105 136-191 (344)
24 COG1505 Serine proteases of th 62.7 4.7 0.0001 42.3 2.0 107 114-231 445-573 (648)
25 COG3481 Predicted HD-superfami 61.7 7.6 0.00016 37.1 3.0 49 74-123 149-199 (287)
26 TIGR03760 ICE_TraI_Pfluor inte 59.6 6.8 0.00015 35.5 2.2 36 70-105 68-122 (218)
27 PRK12704 phosphodiesterase; Pr 57.0 13 0.00028 37.8 3.9 54 49-104 317-374 (520)
28 PRK13480 3'-5' exoribonuclease 53.4 8.4 0.00018 36.8 1.9 32 75-106 168-201 (314)
29 PRK03381 PII uridylyl-transfer 51.5 10 0.00022 40.0 2.3 35 68-102 419-456 (774)
30 PF13328 HD_4: HD domain; PDB: 51.4 13 0.00029 30.7 2.5 48 52-100 2-49 (153)
31 KOG4481 Uncharacterized conser 50.6 15 0.00033 33.3 2.9 33 42-85 113-145 (194)
32 COG4820 EutJ Ethanolamine util 49.3 8.9 0.00019 36.1 1.3 79 75-158 187-271 (277)
33 PRK05092 PII uridylyl-transfer 48.7 9.7 0.00021 40.9 1.6 17 86-102 528-544 (931)
34 PF06784 UPF0240: Uncharacteri 46.7 17 0.00037 32.2 2.6 34 42-86 114-147 (179)
35 PRK05007 PII uridylyl-transfer 45.5 37 0.0008 36.5 5.3 35 68-102 460-512 (884)
36 PRK00275 glnD PII uridylyl-tra 42.6 15 0.00033 39.5 2.0 36 68-103 459-512 (895)
37 PRK04374 PII uridylyl-transfer 42.2 20 0.00043 38.6 2.8 35 68-102 448-500 (869)
38 PRK00227 glnD PII uridylyl-tra 41.9 64 0.0014 34.2 6.3 37 68-104 379-418 (693)
39 PRK01759 glnD PII uridylyl-tra 41.1 16 0.00035 39.0 1.9 35 68-102 435-487 (854)
40 PTZ00100 DnaJ chaperone protei 40.5 86 0.0019 26.3 5.7 53 29-88 41-97 (116)
41 COG1418 Predicted HD superfami 40.0 33 0.00072 31.0 3.5 37 69-105 36-76 (222)
42 PF00307 CH: Calponin homology 38.7 54 0.0012 24.5 3.9 43 217-261 2-47 (108)
43 TIGR02692 tRNA_CCA_actino tRNA 38.2 27 0.00058 34.5 2.8 37 68-104 257-295 (466)
44 PRK08071 L-aspartate oxidase; 38.0 37 0.0008 33.7 3.7 72 31-103 415-507 (510)
45 PRK03059 PII uridylyl-transfer 37.6 24 0.00051 37.9 2.4 34 69-102 440-491 (856)
46 PF09279 EF-hand_like: Phospho 37.5 1.5E+02 0.0032 21.9 6.1 62 33-98 4-65 (83)
47 TIGR03401 cyanamide_fam HD dom 37.2 27 0.00058 31.8 2.4 47 57-103 46-97 (228)
48 COG1713 Predicted HD superfami 35.9 39 0.00085 30.5 3.2 49 49-104 4-56 (187)
49 COG3437 Response regulator con 35.8 56 0.0012 32.4 4.5 52 49-104 169-227 (360)
50 COG1023 Gnd Predicted 6-phosph 35.6 52 0.0011 31.7 4.1 62 44-118 178-251 (300)
51 PRK13298 tRNA CCA-pyrophosphor 34.5 35 0.00077 34.0 3.0 35 69-104 228-262 (417)
52 KOG2155 Tubulin-tyrosine ligas 34.4 22 0.00048 36.7 1.5 18 78-95 373-390 (631)
53 PF12477 TraW_N: Sex factor F 34.1 14 0.00031 24.4 0.1 12 114-125 20-31 (31)
54 TIGR01693 UTase_glnD [Protein- 33.0 15 0.00033 38.8 0.2 17 86-102 463-479 (850)
55 TIGR02578 cas_TM1811_Csm1 CRIS 30.9 18 0.00039 37.7 0.3 14 92-105 2-15 (648)
56 TIGR01346 isocit_lyase isocitr 29.5 43 0.00094 34.7 2.7 40 65-104 386-441 (527)
57 KOG0668 Casein kinase II, alph 29.5 28 0.00061 33.6 1.3 117 113-253 208-330 (338)
58 PRK14064 exodeoxyribonuclease 29.4 1E+02 0.0022 23.8 4.1 41 43-83 3-44 (75)
59 PF03656 Pam16: Pam16; InterP 27.8 21 0.00045 30.3 0.1 33 43-77 52-85 (127)
60 PF05964 FYRN: F/Y-rich N-term 27.4 24 0.00053 25.2 0.4 26 96-126 5-30 (54)
61 TIGR00691 spoT_relA (p)ppGpp s 26.7 62 0.0013 34.0 3.3 34 66-100 16-49 (683)
62 PF07514 TraI_2: Putative heli 25.4 26 0.00056 33.5 0.3 36 70-105 67-121 (327)
63 PF00631 G-gamma: GGL domain; 25.3 77 0.0017 23.3 2.8 25 41-66 18-42 (68)
64 PF07606 DUF1569: Protein of u 25.0 1.2E+02 0.0027 25.6 4.3 55 47-106 11-71 (152)
65 PF08721 Tn7_Tnp_TnsA_C: TnsA 24.9 53 0.0011 23.6 1.8 33 44-77 40-72 (79)
66 COG0647 NagD Predicted sugar p 24.3 1.9E+02 0.0041 27.2 5.8 100 42-161 48-171 (269)
67 PF04986 Y2_Tnp: Putative tran 23.9 22 0.00048 30.9 -0.4 34 164-201 144-177 (183)
68 COG1896 Predicted hydrolases o 23.6 61 0.0013 28.8 2.3 37 68-104 32-77 (193)
69 PF02910 Succ_DH_flav_C: Fumar 23.4 74 0.0016 26.0 2.6 52 32-83 5-69 (129)
70 PRK14067 exodeoxyribonuclease 23.1 1.4E+02 0.0029 23.5 3.8 40 43-82 4-44 (80)
71 PF13446 RPT: A repeated domai 22.8 1.2E+02 0.0026 21.6 3.3 29 45-78 1-29 (62)
72 PRK14068 exodeoxyribonuclease 22.8 1.5E+02 0.0032 23.0 4.0 40 44-83 4-44 (76)
73 PRK11092 bifunctional (p)ppGpp 22.7 1.1E+02 0.0025 32.4 4.4 51 48-100 23-74 (702)
74 PRK10119 putative hydrolase; P 22.5 1.4E+02 0.003 27.5 4.4 48 55-102 14-62 (231)
75 KOG4189 Uncharacterized conser 22.5 89 0.0019 28.9 3.1 50 41-105 6-55 (209)
76 COG1078 HD superfamily phospho 22.4 38 0.00083 33.7 0.8 15 91-105 86-100 (421)
77 COG2361 Uncharacterized conser 21.9 1.9E+02 0.0042 24.5 4.8 22 79-100 58-83 (117)
78 smart00735 ZM ZASP-like motif. 21.3 52 0.0011 20.5 1.0 15 147-161 5-19 (26)
79 PHA00687 hypothetical protein 21.2 53 0.0011 24.2 1.1 20 183-202 8-27 (56)
80 KOG2681 Metal-dependent phosph 20.6 48 0.001 34.0 1.1 55 17-71 50-105 (498)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=2.6e-146 Score=987.67 Aligned_cols=250 Identities=68% Similarity=1.202 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHhhhcchHHHHHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCc
Q 024774 11 RQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDW 90 (262)
Q Consensus 11 ~~~~V~~fY~~~h~~QT~~fv~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW 90 (262)
+++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus 4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW 83 (253)
T PF05153_consen 4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW 83 (253)
T ss_dssp -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccC
Q 024774 91 LHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWG 170 (262)
Q Consensus 91 ~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWg 170 (262)
||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+||||
T Consensus 84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg 161 (253)
T PF05153_consen 84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG 161 (253)
T ss_dssp HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhCCCCCChhhhHHhHhccccccccccccccccChhhHHHHHHHHhcCCccceecCCCCCChhhhhhhhHH
Q 024774 171 HDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLS 250 (262)
Q Consensus 171 HDEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~DLYsKs~~~pdve~l~PYY~~ 250 (262)
||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||++
T Consensus 162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~~ 241 (253)
T PF05153_consen 162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQS 241 (253)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHHH
T ss_pred chHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCC
Q 024774 251 LIEKYFPAKLKW 262 (262)
Q Consensus 251 LidKY~P~~l~W 262 (262)
|||||||++|+|
T Consensus 242 LidKy~P~~l~W 253 (253)
T PF05153_consen 242 LIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHS-S-EEE
T ss_pred HHHHHCCCcCCC
Confidence 999999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=3.3e-93 Score=616.88 Aligned_cols=174 Identities=76% Similarity=1.349 Sum_probs=169.9
Q ss_pred CCccc-chhhhHHHHHHHHHhhhcchHHHHHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 024774 3 RDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAI 81 (262)
Q Consensus 3 R~Y~~-~~~~~~~V~~fY~~~h~~QT~~fv~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEai 81 (262)
|+|++ ++++++||+.|||.||+|||||||++||++|+||++.+||||||||+||++|||||||+|+|||+|||||||+|
T Consensus 29 RdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~i 108 (204)
T KOG1573|consen 29 RDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAI 108 (204)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHH
Confidence 88954 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCchhhhhhhccccchhccCCCCCCCCceeecCceeeecccCCCcccc-cccccCCCCCCCCCCCCCCcccCCC
Q 024774 82 RKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHH-KYFKENPDYSNPAFNTEYGVYSEGC 160 (262)
Q Consensus 82 R~d~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~-e~f~~NPD~~~p~ynT~~GiY~~~C 160 (262)
|++||+.||||||||||||||||. |||+||||||||||||||+|.+||||. ++|.+|||.+||+|||+.|||+|+|
T Consensus 109 R~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD~~np~YnT~~GiYqe~C 185 (204)
T KOG1573|consen 109 RKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPDINNPKYNTKLGIYQEGC 185 (204)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCCCCCcccccccccccCCC
Confidence 999999999999999999999994 689999999999999999999999995 9999999999999999999999999
Q ss_pred CccccccccCcchhHHHHH
Q 024774 161 GLDNVMMSWGHDDYMYLVA 179 (262)
Q Consensus 161 GLdnV~mSWgHDEYlY~Vl 179 (262)
|||||+||||||||||+|+
T Consensus 186 GldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 186 GLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred ChhHHHhhcccccceeecC
Confidence 9999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.20 E-value=0.00045 Score=61.04 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhccCCCCCCCCceeecCceeeecc
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCA 127 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~ 127 (262)
|-+-..++.......----..+|++|+||||...+++ |-.+=+.+.+|+||+|.++.- .+ ++
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~-Gad~elvvAALLHDIGhll~~--~~---------~~------ 65 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAA-GADDELIVAAFLHDIGHLLAD--EG---------AT------ 65 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhcchhhhc--cc---------cc------
Confidence 3344444444443322235699999999999999998 777777999999999998732 11 11
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHhHhcc----ccccc
Q 024774 128 FDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS----FYALH 203 (262)
Q Consensus 128 f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhS----FypwH 203 (262)
.+..|+ .+.|++.==..|+. .+|++...+||.|. ++---
T Consensus 66 ----------------------~~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv~aKryl~a~ 108 (179)
T TIGR03276 66 ----------------------PMGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHVQAKRYLCAV 108 (179)
T ss_pred ----------------------ccccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHcc
Confidence 111222 23588888888886 39999999999986 12111
Q ss_pred cccccccc--------------cChhhHHHHH------HHHhcCCccceecCCC--CCChhhhhhh
Q 024774 204 KSEAYKHL--------------MNEEDVENLK------WLETFSKYDLYSKSKV--RIDVEKVKPY 247 (262)
Q Consensus 204 ~~~~Y~~L--------------~~~~D~~~l~------wv~~Fn~~DLYsKs~~--~pdve~l~PY 247 (262)
..+-|.+| |+++..+-++ -.-.|-++|==+|.+. .|++|..+|.
T Consensus 109 ~p~Y~~~LS~aS~~sL~~QGG~~~~~e~~~f~~~p~~~dav~lR~wDd~ak~~~~~~~~l~~~~~~ 174 (179)
T TIGR03276 109 DPAYAESLSPASRRSLELQGGPFTAAEADAFERDPHAADAIRLRRWDDLAKDPGVPTPDLDHFMPL 174 (179)
T ss_pred ChHHHHHcCHHHHhHHHHcCCCCCHHHHHHHHhCccHHHHHHHHHcchhccCCCCCCCCHHHHHHH
Confidence 12223455 6655544332 2223678888888877 4666654443
No 4
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.75 E-value=0.0078 Score=44.00 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHhh---CC--CCCchhhhhhhccccchhc
Q 024774 68 EPQIEHLLQTAEAIRKD---YP--DEDWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d---~~--~pdW~qLtGliHDLGKvl~ 105 (262)
.+.++|.+++|..++.- .+ +.+.+-++||+||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 45678888887776533 11 4577889999999999884
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=94.19 E-value=0.072 Score=37.66 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=22.9
Q ss_pred ccCcchhHHHHHHhCCCCCChhhhHHhHhc
Q 024774 168 SWGHDDYMYLVAKENKTTLPSAALFIIRYH 197 (262)
Q Consensus 168 SWgHDEYlY~Vlk~n~stLP~eaL~mIRyh 197 (262)
.-+|.+.=..+++. ..+|++...+||+|
T Consensus 50 ~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 50 FESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 45677777788875 47999999999998
No 6
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=93.44 E-value=0.025 Score=42.24 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH---hhCC---CCCchhhhhhhccccchh
Q 024774 71 IEHLLQTAEAIR---KDYP---DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 71 i~H~lQTAEaiR---~d~~---~pdW~qLtGliHDLGKvl 104 (262)
++|.+.+|+.++ +..+ +.+.+.++||+||+||..
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 567777665544 3334 668899999999999998
No 7
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=93.36 E-value=0.046 Score=45.78 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHh----hCCCCCchhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~----d~~~pdW~qLtGliHDLGKvl 104 (262)
..-.+|.+.+|...|+ -.++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3557899988876543 226789999999999999953
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=91.95 E-value=0.19 Score=44.92 Aligned_cols=102 Identities=26% Similarity=0.365 Sum_probs=71.1
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccc
Q 024774 60 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFK 139 (262)
Q Consensus 60 DeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~ 139 (262)
|++=----++|.+|+||+|-..-+| |-++=+.-..|+||+|-+.. .+| +|..
T Consensus 21 ~e~y~ge~VTq~eHaLQ~AtlAerd-Ga~~~lVaaALLHDiGhl~~--~~g---------~~ps---------------- 72 (186)
T COG4341 21 DEGYSGEPVTQLEHALQCATLAERD-GADTALVAAALLHDIGHLYA--DYG---------HTPS---------------- 72 (186)
T ss_pred ccccccCcchhhhhHHHHhHHHHhc-CCcHHHHHHHHHHhHHHHhh--hcC---------CCcc----------------
Confidence 3333334578999999999999999 88887888999999999983 242 1211
Q ss_pred cCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHhHhccccccccccccccccChhhHHH
Q 024774 140 ENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVEN 219 (262)
Q Consensus 140 ~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~Y~~L~~~~D~~~ 219 (262)
.-|+|.- =|+|.==-||.. -.|+-.-.-||.|- |+=++||+ -|.+-
T Consensus 73 -------------------~~~i~d~----~hee~~~~vL~~---~f~~~v~e~vrlHv-------~akR~lca-~~p~Y 118 (186)
T COG4341 73 -------------------AAGIDDP----FHEEFATPVLRK---LFPPFVREPVRLHV-------GAKRYLCA-VDPAY 118 (186)
T ss_pred -------------------ccccchh----HHHHHhHHHHHH---hCcHHHHHHHHHHH-------hhhhhhhc-cChHH
Confidence 1233333 367777778866 47888888899885 67788887 55554
Q ss_pred HHHH
Q 024774 220 LKWL 223 (262)
Q Consensus 220 l~wv 223 (262)
..=+
T Consensus 119 f~~l 122 (186)
T COG4341 119 FDDL 122 (186)
T ss_pred Hhhc
Confidence 4333
No 9
>PRK00106 hypothetical protein; Provisional
Probab=91.33 E-value=0.51 Score=48.09 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hC-CCCCchhhhhhhccccchhccCCCCCCCCceeecCceee
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 124 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~---d~-~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpV 124 (262)
.|++.+|-.|-.-.+-+.. ...|.+.+|..++. .+ .++++.-++||+||+||++- .
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~-----~------------- 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAID-----R------------- 391 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccC-----c-------------
Confidence 5788888877544333332 48999999887542 22 46789999999999999851 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHhHhcc
Q 024774 125 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 125 GC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhS 198 (262)
+ .- .+|.+.=+.+++.. .+|++.+.+|++|-
T Consensus 392 -----------e----------------------~~--------g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH 422 (535)
T PRK00106 392 -----------E----------------------VE--------GSHVEIGMEFARKY--KEHPVVVNTIASHH 422 (535)
T ss_pred -----------c----------------------cc--------CChHHHHHHHHHHc--CCCHHHHHHHHHhC
Confidence 0 01 15888889999865 48999999999985
No 10
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=90.81 E-value=0.34 Score=40.81 Aligned_cols=126 Identities=24% Similarity=0.298 Sum_probs=71.8
Q ss_pred ccCCCccccHHHHHHHH--------------HhhhcCCC-CCCCc-hHHHHHHHHHHHHHhh-----CCCCCchhhhhhh
Q 024774 39 GKLNRVEMSIWECCELL--------------NDVVDESD-PDLDE-PQIEHLLQTAEAIRKD-----YPDEDWLHLTGLI 97 (262)
Q Consensus 39 ~~~~~~~Msi~ea~e~L--------------~~lvDeSD-PD~~l-~~i~H~lQTAEaiR~d-----~~~pdW~qLtGli 97 (262)
.++.+.--||.+|+-.| ...+..+. ....+ .-..|.+.+|..+++- ..+||-.-++||+
T Consensus 48 ~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gLL 127 (196)
T PF08668_consen 48 FGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGLL 127 (196)
T ss_dssp TTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556667999999877 11222222 11222 3348999998887632 2345889999999
Q ss_pred ccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHH
Q 024774 98 HDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYL 177 (262)
Q Consensus 98 HDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~ 177 (262)
||+|+++++..+ |+. |--++. ..+.++- +. =-.++-.+...|.|==..
T Consensus 128 ~~iG~l~l~~~~---~~~------~~~~~~---------~~~~~~~---~~-----------~~~e~~~~g~~h~~lg~~ 175 (196)
T PF08668_consen 128 HDIGKLLLLSLF---PEY------YEEILQ---------EVKQEPE---SR-----------EEAERELFGVTHAELGAA 175 (196)
T ss_dssp TTHHHHHHHHHC---HHH------HHHHHH---------HHHHHCT---HH-----------HHHHHHHHSSHHHHHHHH
T ss_pred HHHhHHHHHHHh---HHH------HHHHHH---------HHHcCCC---CH-----------HHHHHHHHcCCHHHHHHH
Confidence 999999975222 111 110000 0000000 00 123445666678888888
Q ss_pred HHHhCCCCCChhhhHHhHhcc
Q 024774 178 VAKENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 178 Vlk~n~stLP~eaL~mIRyhS 198 (262)
+++.- .||++-...||+|-
T Consensus 176 l~~~W--~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 176 LLRKW--GLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHT--T--HHHHHHHHHTT
T ss_pred HHHHc--CCCHHHHHHHHHHh
Confidence 88764 89999999999984
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=90.08 E-value=0.12 Score=42.40 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHh----------hCC--CCCchhhhhhhccccchh
Q 024774 71 IEHLLQTAEAIRK----------DYP--DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 71 i~H~lQTAEaiR~----------d~~--~pdW~qLtGliHDLGKvl 104 (262)
.+|++.||+..+. ..| .++++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 223 358999999999999976
No 12
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.46 E-value=1.2 Score=44.83 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh----hCCCCCchhhhhhhccccchhccCCCCCCCCceeecCceee
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 124 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~----d~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpV 124 (262)
.|++.+|..|---+....+ ...|.+.+|...+. --.+++...+.||+||+||++. .
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~---------~--------- 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVD---------H--------- 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccc---------h---------
Confidence 4677777775332222222 46899888776442 2256788889999999999740 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHhHhccc
Q 024774 125 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 199 (262)
Q Consensus 125 GC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSF 199 (262)
+ + -.+|.++=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02588888888875 4689999999999984
No 13
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=88.41 E-value=0.19 Score=37.09 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=22.8
Q ss_pred cccccCcchhHHHHHHh----CCCCCChhhhHHhH-hcc
Q 024774 165 VMMSWGHDDYMYLVAKE----NKTTLPSAALFIIR-YHS 198 (262)
Q Consensus 165 V~mSWgHDEYlY~Vlk~----n~stLP~eaL~mIR-yhS 198 (262)
....++|...=+.+++. ....++.+....+. +|.
T Consensus 54 ~~~~~~h~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (145)
T cd00077 54 SELEKDHAIVGAEILRELLLEEVIKLIDELILAVDASHH 92 (145)
T ss_pred HHHHHhhHHHHHHHHHHhhhcccccccHHHHHHHHHHcc
Confidence 44567899999999864 45666766655555 443
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=87.51 E-value=0.55 Score=42.49 Aligned_cols=55 Identities=31% Similarity=0.432 Sum_probs=41.1
Q ss_pred ccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 024774 44 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 44 ~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~---d~~-~pdW~qLtGliHDLGKvl 104 (262)
+.||-.||+++|.+.|-+ .+.+.|++.++..+|. .+| +..=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 568889999999999863 6779999999998883 333 222235899999975433
No 15
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=82.73 E-value=2.7 Score=35.78 Aligned_cols=29 Identities=10% Similarity=-0.067 Sum_probs=24.1
Q ss_pred cCcchhHHHHHHhCCCCCChhhhHHhHhccc
Q 024774 169 WGHDDYMYLVAKENKTTLPSAALFIIRYHSF 199 (262)
Q Consensus 169 WgHDEYlY~Vlk~n~stLP~eaL~mIRyhSF 199 (262)
+.|.+.=|.+|+. ..+|++.+.+|+.|.+
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~ 89 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFG 89 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhC
Confidence 3799999999986 4679999999998754
No 16
>PRK12705 hypothetical protein; Provisional
Probab=80.46 E-value=4 Score=41.58 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh----CCCCCchhhhhhhccccchhccCCCCCCCCceeecCceee
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD----YPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 124 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d----~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpV 124 (262)
.+++..|-.|---+.+.. ..+.|.+.+|..++.- --+++-...+||+||+||+.- +.
T Consensus 305 ~~li~~Lg~L~~R~sygq--nvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e-------- 365 (508)
T PRK12705 305 PGLVRLLGRLYFRTSYGQ--NVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE-------- 365 (508)
T ss_pred HHHHHHHHHHhhcccCCc--hHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh--------
Confidence 345555554422222222 2579999998866522 234566778999999999630 00
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHhHhcccccccc
Q 024774 125 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHK 204 (262)
Q Consensus 125 GC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~ 204 (262)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||..
T Consensus 366 ------------------------------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~~ 400 (508)
T PRK12705 366 ------------------------------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVNP 400 (508)
T ss_pred ------------------------------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCCC
Confidence 0126888888899864 699999999999983 5543
Q ss_pred c
Q 024774 205 S 205 (262)
Q Consensus 205 ~ 205 (262)
.
T Consensus 401 ~ 401 (508)
T PRK12705 401 E 401 (508)
T ss_pred C
Confidence 3
No 17
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=79.41 E-value=2 Score=40.86 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=77.9
Q ss_pred HHhccCCCccccHHHHHHHH-----Hhhhc-------CCCCCCCchHH----HHHHHHHHHHH---hhC--CCCCchhhh
Q 024774 36 EEYGKLNRVEMSIWECCELL-----NDVVD-------ESDPDLDEPQI----EHLLQTAEAIR---KDY--PDEDWLHLT 94 (262)
Q Consensus 36 ~~~~~~~~~~Msi~ea~e~L-----~~lvD-------eSDPD~~l~~i----~H~lQTAEaiR---~d~--~~pdW~qLt 94 (262)
.-|..+++.--||-||+..| -+||= -+.|+..--+. ++++.||-.+. ++. ++++=.-++
T Consensus 67 S~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~~ 146 (289)
T COG1639 67 SPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAYTA 146 (289)
T ss_pred chhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 35677888889999998876 12221 12232222222 45555554443 343 466778899
Q ss_pred hhhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchh
Q 024774 95 GLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDY 174 (262)
Q Consensus 95 GliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEY 174 (262)
||+|.+|+|+++..| |+|.-++ |. .-..|+|-... +|-.+--.+|-+-
T Consensus 147 gLLh~lG~l~ll~~~---~~~~~~~------~~---------~~~~~~~~~~~--------------~~e~~~i~~h~~I 194 (289)
T COG1639 147 GLLHNLGILVLLTDF---PDHCELL------DY---------LLALNNDELLA--------------LDEELGIFGHASI 194 (289)
T ss_pred HHHHHccHHHHHHHh---HHHHHHH------HH---------HHHhccCcccc--------------hHHHhccccchHH
Confidence 999999999987444 4453322 21 22234433211 2222222347888
Q ss_pred HHHHHHhCCCCCChhhhHHhHhccc
Q 024774 175 MYLVAKENKTTLPSAALFIIRYHSF 199 (262)
Q Consensus 175 lY~Vlk~n~stLP~eaL~mIRyhSF 199 (262)
-+.+++.- .+|++-...||+|-=
T Consensus 195 ga~llr~W--~fp~~l~e~i~~~~~ 217 (289)
T COG1639 195 GAYLLRRW--NFPDDLIEAIRFHHN 217 (289)
T ss_pred HHHHHHHc--CCCHHHHHHHHHhhc
Confidence 88888875 799999999999864
No 18
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=79.12 E-value=1.3 Score=47.55 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHH---hhCCCCCc---hhhhhhhccccchh
Q 024774 69 PQIEHLLQTAEAIR---KDYPDEDW---LHLTGLIHDLGKVL 104 (262)
Q Consensus 69 ~~i~H~lQTAEaiR---~d~~~pdW---~qLtGliHDLGKvl 104 (262)
+.-+|+..+|+..+ +.+|-++| ..+.|+.|||||.-
T Consensus 675 ~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 34599998888776 55788888 57999999999976
No 19
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=71.37 E-value=9.5 Score=31.35 Aligned_cols=55 Identities=31% Similarity=0.476 Sum_probs=44.6
Q ss_pred hhhcchHHHHHHHHHHhcc--CCCccccHHHHHHHHHh------hhcCCCCCCCchHHHHHHHHHHH
Q 024774 22 NHINQTYDFVKKMREEYGK--LNRVEMSIWECCELLND------VVDESDPDLDEPQIEHLLQTAEA 80 (262)
Q Consensus 22 ~h~~QT~~fv~~~~~~~~~--~~~~~Msi~ea~e~L~~------lvDeSDPD~~l~~i~H~lQTAEa 80 (262)
..+.|+.++|.+..++|+- .|+.+-+|-||-..|-. ||++. +-|.+.|+++.||.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3467889999999999974 66899999999999964 66642 23788999999985
No 20
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=69.31 E-value=6.1 Score=38.37 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=62.8
Q ss_pred ccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH---hhC-CCCCchhhhhhhccccchhccCCCCCCCC
Q 024774 39 GKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR---KDY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQ 114 (262)
Q Consensus 39 ~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR---~d~-~~pdW~qLtGliHDLGKvl~l~~~~~~~Q 114 (262)
+|.....++..||+++|.+.-. + -..+.|.++.|...+ +.+ .+.+=+.++||+||+||....
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~--~----e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~-------- 228 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGA--S----DLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTN-------- 228 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCC--C----hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccccc--------
Confidence 3444556899999999998722 1 124889887655433 222 244555678999999996410
Q ss_pred ceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChhhhHHh
Q 024774 115 WAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFII 194 (262)
Q Consensus 115 W~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mI 194 (262)
. -.|...=+++|+. ..+|++-+..|
T Consensus 229 ----------------------------~-------------------------~~H~~~Ga~iL~e--~G~~e~i~~iI 253 (339)
T PRK12703 229 ----------------------------G-------------------------IDHAVAGAEILRK--ENIDDRVVSIV 253 (339)
T ss_pred ----------------------------C-------------------------CCHHHHHHHHHHH--CCCCHHHHHHH
Confidence 0 1477777888975 46789999999
Q ss_pred Hhccc
Q 024774 195 RYHSF 199 (262)
Q Consensus 195 RyhSF 199 (262)
+.|.-
T Consensus 254 e~H~g 258 (339)
T PRK12703 254 ERHIG 258 (339)
T ss_pred HHHhc
Confidence 99883
No 21
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=66.93 E-value=3.1 Score=40.69 Aligned_cols=36 Identities=28% Similarity=0.192 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl 104 (262)
.+..+|.+.+-+.+.+- +...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l-~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKL-SPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhc-CCCHHHHHHHHhccccCCC
Confidence 45678988888777665 4445688999999999965
No 22
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=66.12 E-value=3.5 Score=38.82 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=23.4
Q ss_pred CcchhHHHHHHhCCCCCC-hhhhHHhHhcc
Q 024774 170 GHDDYMYLVAKENKTTLP-SAALFIIRYHS 198 (262)
Q Consensus 170 gHDEYlY~Vlk~n~stLP-~eaL~mIRyhS 198 (262)
.|.+.=+.++++ ...+| ++.+..||+|-
T Consensus 259 ~H~~~Ga~ll~~-~~~~p~~~i~~aI~~Hh 287 (342)
T PRK07152 259 LHQYVGALWLKH-VYGIDDEEILNAIRNHT 287 (342)
T ss_pred HhHHHHHHHHHH-HcCCCcHHHHHHHHhcc
Confidence 699999999976 34677 78999999987
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=64.35 E-value=4.7 Score=38.12 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCCCC----Cchhhhhhhccccchhc
Q 024774 54 LLNDV-VDESDPDLDEPQIEHLLQTAEAIR---KDYPDE----DWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 54 ~L~~l-vDeSDPD~~l~~i~H~lQTAEaiR---~d~~~p----dW~qLtGliHDLGKvl~ 105 (262)
.+... ++..|+.| ..|...+|+-.+ +.-|-+ ..+-+.|++||+||+-.
T Consensus 136 ~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 136 ALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 33333 77777766 678888876544 333433 35678999999999984
No 24
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=62.71 E-value=4.7 Score=42.27 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=69.4
Q ss_pred CceeecCceeeec----------------ccCCCcccccccccCCCCCCCCCCC--CCCcccC-CCCcc-ccccccCcch
Q 024774 114 QWAVVGDTFPVGC----------------AFDESIVHHKYFKENPDYSNPAFNT--EYGVYSE-GCGLD-NVMMSWGHDD 173 (262)
Q Consensus 114 QW~vvGdTfpVGC----------------~f~~~iv~~e~f~~NPD~~~p~ynT--~~GiY~~-~CGLd-nV~mSWgHDE 173 (262)
-|.=-|-+|++.| +.....||.+||+---|-....|.| +.||.-. |-||= -|.|. ...|
T Consensus 445 ~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPe 523 (648)
T COG1505 445 LWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPE 523 (648)
T ss_pred HHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChh
Confidence 4777788888765 3467889999998888877777766 5777754 44442 22221 3333
Q ss_pred hHHHHHHhCCCCCChhhhHHhHhccccccccccc--cccccChhhHHHHHHHHhcCCccc
Q 024774 174 YMYLVAKENKTTLPSAALFIIRYHSFYALHKSEA--YKHLMNEEDVENLKWLETFSKYDL 231 (262)
Q Consensus 174 YlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~--Y~~L~~~~D~~~l~wv~~Fn~~DL 231 (262)
=+=-++- =-.-|.|||||-|++ |+ =.+-=|++|.+.++|+.++.||-=
T Consensus 524 lfgA~v~------evPllDMlRYh~l~a----G~sW~~EYG~Pd~P~d~~~l~~YSPy~n 573 (648)
T COG1505 524 LFGAAVC------EVPLLDMLRYHLLTA----GSSWIAEYGNPDDPEDRAFLLAYSPYHN 573 (648)
T ss_pred hhCceee------ccchhhhhhhccccc----chhhHhhcCCCCCHHHHHHHHhcCchhc
Confidence 2211111 113589999999975 22 133447888999999999999853
No 25
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=61.65 E-value=7.6 Score=37.09 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCC--CchhhhhhhccccchhccCCCCCCCCceeecCcee
Q 024774 74 LLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFP 123 (262)
Q Consensus 74 ~lQTAEaiR~d~~~p--dW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfp 123 (262)
+++.|.++-+-||-- |=++..+.+||+||++-+-.. ....|+|-|+-.+
T Consensus 149 ~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~-~~~~yt~~g~lig 199 (287)
T COG3481 149 VLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGP-EATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCc-ccccceeccceeE
Confidence 556666666656544 778889999999999976333 3457877776543
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=59.56 E-value=6.8 Score=35.51 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=22.8
Q ss_pred HHHHHHHHHH---HHHhhCCCC-------------C---chhhhhhhccccchhc
Q 024774 70 QIEHLLQTAE---AIRKDYPDE-------------D---WLHLTGLIHDLGKVLN 105 (262)
Q Consensus 70 ~i~H~lQTAE---aiR~d~~~p-------------d---W~qLtGliHDLGKvl~ 105 (262)
-++|-+.+|. .+++-|.-| . =+-..||+||+||++.
T Consensus 68 Ll~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 68 LLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhhH
Confidence 4677777744 444555222 2 2455689999999974
No 27
>PRK12704 phosphodiesterase; Provisional
Probab=57.05 E-value=13 Score=37.78 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH---hhC-CCCCchhhhhhhccccchh
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR---KDY-PDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR---~d~-~~pdW~qLtGliHDLGKvl 104 (262)
.+++.+|..| .-.|+.+. ....|.+-+|-..+ +.. .+++-.-+.||+||+||+.
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 3556777666 33444432 24578877665543 222 3567778999999999984
No 28
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=53.37 E-value=8.4 Score=36.76 Aligned_cols=32 Identities=44% Similarity=0.631 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCC--Cchhhhhhhccccchhcc
Q 024774 75 LQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNL 106 (262)
Q Consensus 75 lQTAEaiR~d~~~p--dW~qLtGliHDLGKvl~l 106 (262)
+++|.++-..||.- |=+-..+|+||+||+.-+
T Consensus 168 ~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 168 LRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 34444444556643 445555599999999965
No 29
>PRK03381 PII uridylyl-transferase; Provisional
Probab=51.47 E-value=10 Score=40.04 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHH---hhCCCCCchhhhhhhccccc
Q 024774 68 EPQIEHLLQTAEAIR---KDYPDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 68 l~~i~H~lQTAEaiR---~d~~~pdW~qLtGliHDLGK 102 (262)
.+.-+|.+.|-+.+. ..-..|+.+-|++|+||+||
T Consensus 419 ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 419 WTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 355578888755443 33356789999999999999
No 30
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=51.44 E-value=13 Score=30.72 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 024774 52 CELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 100 (262)
Q Consensus 52 ~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDL 100 (262)
+++.-+.....-..+..|-|.|++++|+.+..- +-..=...+||+||.
T Consensus 2 ~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~-~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 2 LAFAAEAHAGQRRKSGEPYISHPLEVAEILAEL-GLDEETIAAALLHDV 49 (153)
T ss_dssp HHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred HHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHhhheeecH
Confidence 333333333334456688899999999999554 533336788899984
No 31
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.57 E-value=15 Score=33.29 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.1
Q ss_pred CCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC
Q 024774 42 NRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 85 (262)
Q Consensus 42 ~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~ 85 (262)
.+++.||-||+++||. -.-+|.+ ||||-|-..|
T Consensus 113 pkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 113 PKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 4688999999999998 5566776 7899998873
No 32
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=49.26 E-value=8.9 Score=36.06 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=57.1
Q ss_pred HHHHHHHHhhC--CCCCchhhhhhhccccchhc--cCCCCCCCCceeecCceeeecccCC-CcccccccccCCCC-CCCC
Q 024774 75 LQTAEAIRKDY--PDEDWLHLTGLIHDLGKVLN--LPSFGGLPQWAVVGDTFPVGCAFDE-SIVHHKYFKENPDY-SNPA 148 (262)
Q Consensus 75 lQTAEaiR~d~--~~pdW~qLtGliHDLGKvl~--l~~~~~~~QW~vvGdTfpVGC~f~~-~iv~~e~f~~NPD~-~~p~ 148 (262)
|.+||.+++++ +.+-|-+..-..--+-.+.. +...+.++-|-|.|. |.++- .-+|...|+.|--- ++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-----c~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-----CMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-----ccCccHHHHHHHHhccccccCCCcc
Confidence 67899999997 67788888877666665553 444556667777663 66663 34577777877655 7899
Q ss_pred CCCCCCcccC
Q 024774 149 FNTEYGVYSE 158 (262)
Q Consensus 149 ynT~~GiY~~ 158 (262)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999654
No 33
>PRK05092 PII uridylyl-transferase; Provisional
Probab=48.67 E-value=9.7 Score=40.86 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.4
Q ss_pred CCCCchhhhhhhccccc
Q 024774 86 PDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 86 ~~pdW~qLtGliHDLGK 102 (262)
++|+.+-|++|+||+||
T Consensus 528 ~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 528 ESRRALYVAVLLHDIAK 544 (931)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 56788999999999999
No 34
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=46.72 E-value=17 Score=32.19 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=27.8
Q ss_pred CCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCC
Q 024774 42 NRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYP 86 (262)
Q Consensus 42 ~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~ 86 (262)
.++++||.||+++|++.- .||.+ .|||+|-++|.
T Consensus 114 PkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY~ 147 (179)
T PF06784_consen 114 PKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEYK 147 (179)
T ss_pred CCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHhC
Confidence 479999999999999854 56765 35999999975
No 35
>PRK05007 PII uridylyl-transferase; Provisional
Probab=45.52 E-value=37 Score=36.53 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 024774 68 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~------------------d~~~pdW~qLtGliHDLGK 102 (262)
.+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 4556888888776652 1247789999999999999
No 36
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=42.58 E-value=15 Score=39.45 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCchhhhhhhccccch
Q 024774 68 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGKV 103 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d------------------~~~pdW~qLtGliHDLGKv 103 (262)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 45557888887766531 1356799999999999993
No 37
>PRK04374 PII uridylyl-transferase; Provisional
Probab=42.22 E-value=20 Score=38.61 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 024774 68 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~------------------d~~~pdW~qLtGliHDLGK 102 (262)
.+.-+|.+.+-+.+++ ....|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 4556788887666542 1145789999999999999
No 38
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=41.95 E-value=64 Score=34.22 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHhh---CCCCCchhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIRKD---YPDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d---~~~pdW~qLtGliHDLGKvl 104 (262)
.+.-+|.++|.+.+.+. -..|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 35567999998866432 25677788999999999943
No 39
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=41.12 E-value=16 Score=39.03 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 024774 68 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~------------------d~~~pdW~qLtGliHDLGK 102 (262)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4566788888776532 1256788899999999999
No 40
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=40.50 E-value=86 Score=26.31 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcc--CC--CccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCC
Q 024774 29 DFVKKMREEYGK--LN--RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDE 88 (262)
Q Consensus 29 ~fv~~~~~~~~~--~~--~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~p 88 (262)
.|+..+++-+.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||.
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPDk 97 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPDN 97 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Confidence 467778777744 33 468999999999973 34555666655544 3445556763
No 41
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=39.96 E-value=33 Score=30.99 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=26.3
Q ss_pred hHHHHHHHHH---HHHHhhC-CCCCchhhhhhhccccchhc
Q 024774 69 PQIEHLLQTA---EAIRKDY-PDEDWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 69 ~~i~H~lQTA---EaiR~d~-~~pdW~qLtGliHDLGKvl~ 105 (262)
..+.|.+.+| ..|-+.. .|++=....||+||+||..-
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 4467776654 4444443 57777888999999999984
No 42
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=38.71 E-value=54 Score=24.48 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCccceecCCCCCCh-hhhh--hhhHHHHHHHcCCCCC
Q 024774 217 VENLKWLETFSKYDLYSKSKVRIDV-EKVK--PYYLSLIEKYFPAKLK 261 (262)
Q Consensus 217 ~~~l~wv~~Fn~~DLYsKs~~~pdv-e~l~--PYY~~LidKY~P~~l~ 261 (262)
.++++||+...+-. ++.....|+ +.++ =-+-.||+++.|+.+.
T Consensus 2 ~~ll~Win~~l~~~--~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~ 47 (108)
T PF00307_consen 2 KELLKWINSHLEKY--GKGRRVTNFSEDLRDGVVLCKLINKLFPGTID 47 (108)
T ss_dssp HHHHHHHHHHHTTS--TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred HHHHHHHHHHcccc--cCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence 47899999887522 223344565 5555 4678899999998764
No 43
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=38.25 E-value=27 Score=34.48 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHhhC-CCCC-chhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIRKDY-PDED-WLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d~-~~pd-W~qLtGliHDLGKvl 104 (262)
.+...|.++|-+.+.+-- ..++ .+.|+.|+||+||-.
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~ 295 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPA 295 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCC
Confidence 467789999877765421 1234 689999999999965
No 44
>PRK08071 L-aspartate oxidase; Provisional
Probab=38.02 E-value=37 Score=33.72 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=47.1
Q ss_pred HHHHHHHhccCCCccccHHHHHHHHHhhh-cCC--CCC---CCchHHHHHHHHHHHH---------------HhhCCCCC
Q 024774 31 VKKMREEYGKLNRVEMSIWECCELLNDVV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPDED 89 (262)
Q Consensus 31 v~~~~~~~~~~~~~~Msi~ea~e~L~~lv-DeS--DPD---~~l~~i~H~lQTAEai---------------R~d~~~pd 89 (262)
.++...+|....|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566777777788899999999999884 211 111 1223457888899886 44578778
Q ss_pred chhhhhhhccccch
Q 024774 90 WLHLTGLIHDLGKV 103 (262)
Q Consensus 90 W~qLtGliHDLGKv 103 (262)
|...+ ++-.-||+
T Consensus 495 ~~~~~-~~~~~~~~ 507 (510)
T PRK08071 495 WRGKE-IVRTKRKL 507 (510)
T ss_pred cCceE-EEecCCce
Confidence 85544 44444554
No 45
>PRK03059 PII uridylyl-transferase; Provisional
Probab=37.61 E-value=24 Score=37.88 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 024774 69 PQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 69 ~~i~H~lQTAEaiR~------------------d~~~pdW~qLtGliHDLGK 102 (262)
+.-+|.+.|-+.+++ +-.+++-+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 455788888777643 1134688999999999999
No 46
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=37.51 E-value=1.5e+02 Score=21.87 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=42.4
Q ss_pred HHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhc
Q 024774 33 KMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIH 98 (262)
Q Consensus 33 ~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliH 98 (262)
..=.+|.+ +...||+-+=.+.|++ ...++..+..++..+++.=|...+. ....-|-+-||++
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~--eQ~~~~~~~~~~~~li~~~~~~~~~-~~~~~lt~~gF~~ 65 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLRE--EQGEPRLTDEQAKELIEKFEPDERN-RQKGQLTLEGFTR 65 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHH--TSS-TTSSHHHHHHHHHHHHHHHHH-HCTTEEEHHHHHH
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHH--HhccccCcHHHHHHHHHHHccchhh-cccCCcCHHHHHH
Confidence 34467766 8899999999999987 4456666788888888775544432 2336677777653
No 47
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=37.24 E-value=27 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=28.9
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHHHhh-----CCCCCchhhhhhhccccch
Q 024774 57 DVVDESDPDLDEPQIEHLLQTAEAIRKD-----YPDEDWLHLTGLIHDLGKV 103 (262)
Q Consensus 57 ~lvDeSDPD~~l~~i~H~lQTAEaiR~d-----~~~pdW~qLtGliHDLGKv 103 (262)
+++-+.-|+-++.=+...+.+|.+|-+. -.+++=+-+++|+||+|+.
T Consensus 46 ~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 46 EYAKARLPPETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred HHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 3443333445555555566677777432 1455667789999999975
No 48
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=35.87 E-value=39 Score=30.54 Aligned_cols=49 Identities=31% Similarity=0.459 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh---C-CCCCchhhhhhhccccchh
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD---Y-PDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d---~-~~pdW~qLtGliHDLGKvl 104 (262)
-++...+..++. .+-++|.+..||+.++- | -++.=--++|+.||++|-+
T Consensus 4 ~~l~~~~~~~l~-------~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 4 EELLAIVKELLS-------EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 344455555554 45789998877776642 2 2344488999999999987
No 49
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=35.76 E-value=56 Score=32.38 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHH---HHHHHhhCCC----CCchhhhhhhccccchh
Q 024774 49 WECCELLNDVVDESDPDLDEPQIEHLLQT---AEAIRKDYPD----EDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 49 ~ea~e~L~~lvDeSDPD~~l~~i~H~lQT---AEaiR~d~~~----pdW~qLtGliHDLGKvl 104 (262)
.+.++.|..++..-|+.| -.|+..+ ++++-+..|- -|=++++|.+||+|||-
T Consensus 169 ~~t~~~L~~~~E~R~~et----g~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 169 DETLEELAALLEVRDYET----GDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHhcccch----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 378888888887777766 3455443 3343333331 26688999999999997
No 50
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=35.62 E-value=52 Score=31.74 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHhhhcCCCCCCCchHHHH------------HHHHHHHHHhhCCCCCchhhhhhhccccchhccCCCCC
Q 024774 44 VEMSIWECCELLNDVVDESDPDLDEPQIEH------------LLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG 111 (262)
Q Consensus 44 ~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H------------~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl~l~~~~~ 111 (262)
.+-.+|+|+-.=-+|+.+|.=|.|++++-- |=-||||.|++ | |-=|+.|-+||- |
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~dS----------G 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSDS----------G 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeeccC----------C
Confidence 456677777666667788889999998743 23589999999 7 556888877773 6
Q ss_pred CCCceee
Q 024774 112 LPQWAVV 118 (262)
Q Consensus 112 ~~QW~vv 118 (262)
|+.|+|.
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 7788774
No 51
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=34.53 E-value=35 Score=34.04 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchh
Q 024774 69 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 69 ~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl 104 (262)
....|.+.+-+.+.+. +..-.+-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~-~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKL-TKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhcCCC
Confidence 4457777666666554 4445688899999999975
No 52
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.44 E-value=22 Score=36.72 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCchhhhh
Q 024774 78 AEAIRKDYPDEDWLHLTG 95 (262)
Q Consensus 78 AEaiR~d~~~pdW~qLtG 95 (262)
|+-+|+++|.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999984
No 53
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=34.10 E-value=14 Score=24.37 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.1
Q ss_pred CceeecCceeee
Q 024774 114 QWAVVGDTFPVG 125 (262)
Q Consensus 114 QW~vvGdTfpVG 125 (262)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 445679999986
No 54
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=32.98 E-value=15 Score=38.85 Aligned_cols=17 Identities=47% Similarity=0.837 Sum_probs=14.8
Q ss_pred CCCCchhhhhhhccccc
Q 024774 86 PDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 86 ~~pdW~qLtGliHDLGK 102 (262)
++++-+-|++|+||+||
T Consensus 463 ~~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 463 EDPELLYLAALLHDIGK 479 (850)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 35678999999999999
No 55
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=30.91 E-value=18 Score=37.73 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.2
Q ss_pred hhhhhhccccchhc
Q 024774 92 HLTGLIHDLGKVLN 105 (262)
Q Consensus 92 qLtGliHDLGKvl~ 105 (262)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46789999999994
No 56
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=29.54 E-value=43 Score=34.67 Aligned_cols=40 Identities=25% Similarity=0.636 Sum_probs=32.8
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCC----------Cc------hhhhhhhccccchh
Q 024774 65 DLDEPQIEHLLQTAEAIRKDYPDE----------DW------LHLTGLIHDLGKVL 104 (262)
Q Consensus 65 D~~l~~i~H~lQTAEaiR~d~~~p----------dW------~qLtGliHDLGKvl 104 (262)
.|+.|.+..+-+.||+||+.||+. .| =++-.|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 467889999999999999999864 44 36788999999943
No 57
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=29.54 E-value=28 Score=33.60 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=74.7
Q ss_pred CCceeecCceeeecccCCCccccc-ccc--cCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHHhCCCCCChh
Q 024774 113 PQWAVVGDTFPVGCAFDESIVHHK-YFK--ENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSA 189 (262)
Q Consensus 113 ~QW~vvGdTfpVGC~f~~~iv~~e-~f~--~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk~n~stLP~e 189 (262)
++.+-.=|.|++||-+.+-|.=.| ||. +|+|- =.-+-.| -|-|| ||.-+...+..||++
T Consensus 208 ~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQ--------------LVkIakV---LGt~e-l~~Yl~KY~i~Ldp~ 269 (338)
T KOG0668|consen 208 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQ--------------LVKIAKV---LGTDE-LYAYLNKYQIDLDPQ 269 (338)
T ss_pred hhccccHHHHHHHHHHHHHHhccCcccCCCCCHHH--------------HHHHHHH---hChHH-HHHHHHHHccCCChh
Confidence 345556688888888865433233 442 33332 1112223 26666 555555568899999
Q ss_pred hhHHhHhcccccccc--ccccccccChhhHHHHHHHHhcCCccceecCCCCCChhhhh-hhhHHHHH
Q 024774 190 ALFIIRYHSFYALHK--SEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVK-PYYLSLIE 253 (262)
Q Consensus 190 aL~mIRyhSFypwH~--~~~Y~~L~~~~D~~~l~wv~~Fn~~DLYsKs~~~pdve~l~-PYY~~Lid 253 (262)
-=.+++-||=.||++ ...=+||.+++-.+.|.=+..+. -.+.+.--|++. |||....+
T Consensus 270 ~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD------HqeRlTakEam~HpyF~~~~~ 330 (338)
T KOG0668|consen 270 FEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD------HQERLTAKEAMAHPYFAPVRE 330 (338)
T ss_pred HhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc------cccccchHHHhcCchHHHHHH
Confidence 999999999999998 56679999998888877666543 222233344444 88877654
No 58
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.40 E-value=1e+02 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=32.7
Q ss_pred CccccHHHHHHHHHhhhcCC-CCCCCchHHHHHHHHHHHHHh
Q 024774 43 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIRK 83 (262)
Q Consensus 43 ~~~Msi~ea~e~L~~lvDeS-DPD~~l~~i~H~lQTAEaiR~ 83 (262)
+.++|.-||+..|.++|..- ++++.|.+..-+++.+-++-+
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k 44 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK 44 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34689999999999998875 568889988888877765543
No 59
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=27.85 E-value=21 Score=30.25 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=16.1
Q ss_pred CccccHHHHHHHHHhhhcC-CCCCCCchHHHHHHHH
Q 024774 43 RVEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQT 77 (262)
Q Consensus 43 ~~~Msi~ea~e~L~~lvDe-SDPD~~l~~i~H~lQT 77 (262)
...||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 52 ~~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 52 SKGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp -----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 34799999999999 444 3333223344666654
No 60
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=27.41 E-value=24 Score=25.23 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=13.9
Q ss_pred hhccccchhccCCCCCCCCceeecCceeeec
Q 024774 96 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGC 126 (262)
Q Consensus 96 liHDLGKvl~l~~~~~~~QW~vvGdTfpVGC 126 (262)
.||.||+|... .|-|...-=.||+|=
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy 30 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGY 30 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCE
Confidence 58999999943 256777777899983
No 61
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=26.68 E-value=62 Score=34.00 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 024774 66 LDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 100 (262)
Q Consensus 66 ~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDL 100 (262)
+..|-|.|.+++|+.+.+-..+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 457889999999999986523222 5668999996
No 62
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=25.38 E-value=26 Score=33.51 Aligned_cols=36 Identities=39% Similarity=0.732 Sum_probs=24.5
Q ss_pred HHHHHHHHHH-HHHhhC----C-----------CCCch---hhhhhhccccchhc
Q 024774 70 QIEHLLQTAE-AIRKDY----P-----------DEDWL---HLTGLIHDLGKVLN 105 (262)
Q Consensus 70 ~i~H~lQTAE-aiR~d~----~-----------~pdW~---qLtGliHDLGKvl~ 105 (262)
-+.|.|++|. |+|-.- | .+.|- -++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 4688888874 444321 1 45674 46789999999775
No 63
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=25.28 E-value=77 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=16.1
Q ss_pred CCCccccHHHHHHHHHhhhcCCCCCC
Q 024774 41 LNRVEMSIWECCELLNDVVDESDPDL 66 (262)
Q Consensus 41 ~~~~~Msi~ea~e~L~~lvDeSDPD~ 66 (262)
+++.++.+.+|++.|.+.++ +.+|-
T Consensus 18 l~~~r~~vS~a~~~li~y~~-~~~DP 42 (68)
T PF00631_consen 18 LERERIKVSKACKELIEYCE-STPDP 42 (68)
T ss_dssp HTS----HHHHHHHHHHHHH-GTC-H
T ss_pred HcccceeHHHHHHHHHHHhc-CCCCc
Confidence 34566799999999999988 66664
No 64
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=25.03 E-value=1.2e+02 Score=25.63 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhhhcCCCCC---CCchHH-HHHHHHHHHHHhhCC--CCCchhhhhhhccccchhcc
Q 024774 47 SIWECCELLNDVVDESDPD---LDEPQI-EHLLQTAEAIRKDYP--DEDWLHLTGLIHDLGKVLNL 106 (262)
Q Consensus 47 si~ea~e~L~~lvDeSDPD---~~l~~i-~H~lQTAEaiR~d~~--~pdW~qLtGliHDLGKvl~l 106 (262)
++-|++..|+.|..++-|- -++.|| .|+-|+=|..-..+| .|-||. .-+||+++.
T Consensus 11 ~l~e~~~ri~~L~~~~~~~wGkms~~Qml~Hc~~~~~~s~~g~~~~k~~~~~-----~~lgk~~~~ 71 (152)
T PF07606_consen 11 DLDEIINRINRLTPDTQPQWGKMSVSQMLAHCAQSIEMSMEGYPFPKPAWFR-----RTLGKLAFK 71 (152)
T ss_pred CHHHHHHHHHHhCcCCCCCcCCcCHHHHHHHHHHHHHHHhcCCCCCccHHHH-----HHHHHHHHH
Confidence 5669999999999888885 456666 899888888765444 445665 447888854
No 65
>PF08721 Tn7_Tnp_TnsA_C: TnsA endonuclease C terminal; InterPro: IPR014832 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The C-terminal domain of TnsA binds DNA. ; PDB: 1F1Z_B 1T0F_B.
Probab=24.91 E-value=53 Score=23.60 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=25.2
Q ss_pred ccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 024774 44 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQT 77 (262)
Q Consensus 44 ~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQT 77 (262)
..+||.+.|..++.-. +.++.+.++.|.||+.+
T Consensus 40 ~~~tl~~l~~~~d~~~-~l~~g~~L~~l~~LiA~ 72 (79)
T PF08721_consen 40 PTMTLRDLCKELDKDY-ELEPGTALPLLRHLIAT 72 (79)
T ss_dssp TTSBHHHHHHHHHHHC-T--TTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc-CCCcCChHHHHHHHHhC
Confidence 3499999999888622 67888899999999865
No 66
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.33 E-value=1.9e+02 Score=27.20 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=57.2
Q ss_pred CCccccHHHHHHHHHhh-hcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhccCCCC-----CCCCc
Q 024774 42 NRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFG-----GLPQW 115 (262)
Q Consensus 42 ~~~~Msi~ea~e~L~~l-vDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl~l~~~~-----~~~QW 115 (262)
|....|-.+..+.|..+ .-+..||. -+.=..-||+.|++.+|- +|++.+-.=+ ..-.|
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~~~~~~~---i~TS~~at~~~l~~~~~~-------------~kv~viG~~~l~~~l~~~G~ 111 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGVDVTPDD---IVTSGDATADYLAKQKPG-------------KKVYVIGEEGLKEELEGAGF 111 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCCCCCHHH---eecHHHHHHHHHHhhCCC-------------CEEEEECCcchHHHHHhCCc
Confidence 45566666677777773 22222221 134556677888876442 4555430000 12245
Q ss_pred eeecCcee-----eecccCCCccccc-------------ccccCCCCCCCCCCCCCCcccCCCC
Q 024774 116 AVVGDTFP-----VGCAFDESIVHHK-------------YFKENPDYSNPAFNTEYGVYSEGCG 161 (262)
Q Consensus 116 ~vvGdTfp-----VGC~f~~~iv~~e-------------~f~~NPD~~~p~ynT~~GiY~~~CG 161 (262)
.++++.=+ |++..++.+.|.. |+..|||.. ..|+.| ..|+||
T Consensus 112 ~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~pgaG 171 (269)
T COG0647 112 ELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRPGAG 171 (269)
T ss_pred EEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-CccCcH
Confidence 55554444 6666777766644 677899984 456777 888887
No 67
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=23.95 E-value=22 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=30.6
Q ss_pred ccccccCcchhHHHHHHhCCCCCChhhhHHhHhccccc
Q 024774 164 NVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYA 201 (262)
Q Consensus 164 nV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSFyp 201 (262)
...|...-+|+|-+++.+ +|+.+.-||||.=||.
T Consensus 144 ~~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 144 TKTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 366777899999999987 9999999999999987
No 68
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=23.63 E-value=61 Score=28.79 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=25.3
Q ss_pred chHHHHHHHHHH------HHHhhCC---CCCchhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAE------AIRKDYP---DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAE------aiR~d~~---~pdW~qLtGliHDLGKvl 104 (262)
.+..+|+|++|- .+.+..| ++.=..+.+|+||++.++
T Consensus 32 eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~ 77 (193)
T COG1896 32 ESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEAL 77 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHH
Confidence 667888887762 2232245 344467789999999998
No 69
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=23.42 E-value=74 Score=25.97 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHhccCCCccccHHHHHHHHHhhhcCCC------CC-C------CchHHHHHHHHHHHHHh
Q 024774 32 KKMREEYGKLNRVEMSIWECCELLNDVVDESD------PD-L------DEPQIEHLLQTAEAIRK 83 (262)
Q Consensus 32 ~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSD------PD-~------~l~~i~H~lQTAEaiR~ 83 (262)
++...++.+.-|.+.++.+|++.|..|-.+-. .. . +.-.+.+++.+|++|-+
T Consensus 5 q~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~ 69 (129)
T PF02910_consen 5 QEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAK 69 (129)
T ss_dssp HHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHH
Confidence 45667788899999999999999998855432 11 1 23445889999998743
No 70
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.08 E-value=1.4e+02 Score=23.48 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.9
Q ss_pred CccccHHHHHHHHHhhhcCC-CCCCCchHHHHHHHHHHHHH
Q 024774 43 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIR 82 (262)
Q Consensus 43 ~~~Msi~ea~e~L~~lvDeS-DPD~~l~~i~H~lQTAEaiR 82 (262)
...+|.-+|++.|.++|..- +++++|.+..-+++-+-++-
T Consensus 4 ~k~~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~ 44 (80)
T PRK14067 4 KKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLA 44 (80)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999998765 67899998888877665543
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=22.80 E-value=1.2e+02 Score=21.65 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=21.4
Q ss_pred cccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHH
Q 024774 45 EMSIWECCELLNDVVDESDPDLDEPQIEHLLQTA 78 (262)
Q Consensus 45 ~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTA 78 (262)
.|++-+|++.|.- +|+++-..|.-++|+.
T Consensus 1 ~~~~~~Ay~~Lgi-----~~~~~Dd~Ii~~f~~~ 29 (62)
T PF13446_consen 1 YMDVEEAYEILGI-----DEDTDDDFIISAFQSK 29 (62)
T ss_pred CCCHHHHHHHhCc-----CCCCCHHHHHHHHHHH
Confidence 4899999999973 4566666677776654
No 72
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.79 E-value=1.5e+02 Score=23.03 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.5
Q ss_pred ccccHHHHHHHHHhhhcC-CCCCCCchHHHHHHHHHHHHHh
Q 024774 44 VEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQTAEAIRK 83 (262)
Q Consensus 44 ~~Msi~ea~e~L~~lvDe-SDPD~~l~~i~H~lQTAEaiR~ 83 (262)
.++|.-+|++.|.++|.. .++|++|.+..-+++.+-++-+
T Consensus 4 ~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 4 ETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999876 4578999999888887766544
No 73
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=22.75 E-value=1.1e+02 Score=32.38 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccc
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 100 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW-~qLtGliHDL 100 (262)
+..|+++..+.....-..+..|-|.|.+++|+.+..- + -|+ ...+||+||.
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l-~-~D~~ti~AaLLHDv 74 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEM-R-LDYETLMAALLHDV 74 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHc-C-CCHHHHHHhcccch
Confidence 5567777755544333334567889999999998854 3 233 4677899997
No 74
>PRK10119 putative hydrolase; Provisional
Probab=22.52 E-value=1.4e+02 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccc
Q 024774 55 LNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 55 L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~-~~pdW~qLtGliHDLGK 102 (262)
..+.....||.=|+.=|.-..++|..|-+.. .+..-+.+.+++||+|-
T Consensus 14 v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 14 LKNHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3334444688888888888888898886553 36678888999999963
No 75
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=89 Score=28.93 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhc
Q 024774 41 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 41 ~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDLGKvl~ 105 (262)
.+...|-|.+|.+.+.+.|++.|+++++.|.-|+. =++.-|+--||+++-
T Consensus 6 ~~~~~~~i~~~~~~i~~~v~~e~~eV~L~~f~~a~---------------e~v~~~f~~lG~iF~ 55 (209)
T KOG4189|consen 6 QLGPLPKILQAFKTIEKSVIEEDNEVDLDQFLLAY---------------EEVCKFFGCLGTIFS 55 (209)
T ss_pred hccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 35677899999999999999999999998877653 345556667888884
No 76
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=22.39 E-value=38 Score=33.67 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=11.5
Q ss_pred hhhhhhhccccchhc
Q 024774 91 LHLTGLIHDLGKVLN 105 (262)
Q Consensus 91 ~qLtGliHDLGKvl~ 105 (262)
.+++||+||+|---+
T Consensus 86 ~~~AALLHDIGHgPF 100 (421)
T COG1078 86 VRLAALLHDIGHGPF 100 (421)
T ss_pred HHHHHHHHccCCCcc
Confidence 577888999887654
No 77
>COG2361 Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=1.9e+02 Score=24.49 Aligned_cols=22 Identities=32% Similarity=0.918 Sum_probs=17.8
Q ss_pred HHHHhhCCCCCchhhhhh----hccc
Q 024774 79 EAIRKDYPDEDWLHLTGL----IHDL 100 (262)
Q Consensus 79 EaiR~d~~~pdW~qLtGl----iHDL 100 (262)
+.+|+.||+-.|-+++|+ ||+.
T Consensus 58 ~~~re~~p~vPW~~magmRd~liH~Y 83 (117)
T COG2361 58 KSFREKYPEVPWKEMAGMRDKLIHGY 83 (117)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhhc
Confidence 457888999999999994 6663
No 78
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=21.31 E-value=52 Score=20.48 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.4
Q ss_pred CCCCCCCCcccCCCC
Q 024774 147 PAFNTEYGVYSEGCG 161 (262)
Q Consensus 147 p~ynT~~GiY~~~CG 161 (262)
.-||++-|+|+++=+
T Consensus 5 ~qyn~P~glys~~n~ 19 (26)
T smart00735 5 KQYNSPIGLYSSENI 19 (26)
T ss_pred cccCCCCCCCCcccH
Confidence 569999999988754
No 79
>PHA00687 hypothetical protein
Probab=21.16 E-value=53 Score=24.19 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=14.5
Q ss_pred CCCCChhhhHHhHhcccccc
Q 024774 183 KTTLPSAALFIIRYHSFYAL 202 (262)
Q Consensus 183 ~stLP~eaL~mIRyhSFypw 202 (262)
++|||+||+.++.-..--|-
T Consensus 8 qttlppeamrllqqaaqtpi 27 (56)
T PHA00687 8 QTTLPPEAMRLLQQAAQTPI 27 (56)
T ss_pred cccCCHHHHHHHHHHhcCCc
Confidence 68999999988865443333
No 80
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=20.61 E-value=48 Score=33.99 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHhhhcchHH-HHHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHH
Q 024774 17 NFYRINHINQTYD-FVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQI 71 (262)
Q Consensus 17 ~fY~~~h~~QT~~-fv~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i 71 (262)
+|-|+-|.+|+-= +..=..+.-..|.|.-=+-|=|=+.++.|=-.|-|..-+++.
T Consensus 50 ~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~ 105 (498)
T KOG2681|consen 50 LFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPELCITEV 105 (498)
T ss_pred HHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHH
Confidence 4666666666521 111111222233444455677888888887777787766544
Done!