Query 024774
Match_columns 262
No_of_seqs 125 out of 208
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 5E-145 2E-149 991.5 18.1 256 3-262 33-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 1E-137 3E-142 930.4 15.5 247 13-262 3-250 (250)
3 3ccg_A HD superfamily hydrolas 93.9 0.034 1.2E-06 46.1 3.2 52 46-104 3-58 (190)
4 2o08_A BH1327 protein; putativ 93.9 0.038 1.3E-06 45.8 3.4 52 46-104 2-57 (188)
5 2ogi_A Hypothetical protein SA 93.4 0.055 1.9E-06 45.3 3.6 52 46-104 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 92.4 0.16 5.5E-06 45.0 5.3 130 38-205 72-224 (305)
7 3ljx_A MMOQ response regulator 91.7 0.15 5.2E-06 44.9 4.4 124 39-198 62-206 (288)
8 3i7a_A Putative metal-dependen 89.8 0.38 1.3E-05 42.0 5.0 119 38-199 69-215 (281)
9 2qgs_A Protein Se1688; alpha-h 87.0 0.5 1.7E-05 40.4 3.9 52 48-102 7-63 (225)
10 3m1t_A Putative phosphohydrola 85.3 0.62 2.1E-05 40.6 3.7 123 40-198 62-203 (275)
11 3djb_A Hydrolase, HD family; a 84.1 0.83 2.8E-05 39.6 3.9 56 48-103 7-63 (223)
12 3b57_A LIN1889 protein; Q92AN1 82.5 0.98 3.4E-05 38.0 3.6 55 50-104 9-64 (209)
13 2pq7_A Predicted HD superfamil 81.7 1.1 3.9E-05 37.6 3.7 53 48-103 15-71 (220)
14 3dto_A BH2835 protein; all alp 81.4 1.3 4.4E-05 38.4 4.1 57 48-104 7-64 (223)
15 2pjq_A Uncharacterized protein 81.2 0.75 2.6E-05 39.6 2.5 57 46-102 10-67 (231)
16 3sk9_A Putative uncharacterize 80.3 0.92 3.1E-05 40.5 2.8 47 60-109 17-83 (265)
17 1vqr_A Hypothetical protein CJ 77.7 1.4 4.9E-05 38.5 3.2 128 38-198 76-225 (297)
18 3tm8_A BD1817, uncharacterized 77.5 1.2 4E-05 40.2 2.6 41 170-213 231-271 (328)
19 3mem_A Putative signal transdu 75.5 1.3 4.6E-05 41.7 2.5 127 39-198 231-382 (457)
20 3kq5_A Hypothetical cytosolic 73.5 1.2 4.2E-05 42.6 1.7 38 68-105 74-120 (393)
21 1ynb_A Hypothetical protein AF 53.8 7.4 0.00025 32.9 2.7 36 68-104 37-80 (173)
22 3nqw_A CG11900; stringent resp 49.4 24 0.00083 29.4 5.2 53 48-100 9-64 (179)
23 3nr1_A HD domain-containing pr 49.1 22 0.00074 29.8 4.8 53 48-100 7-62 (178)
24 2hek_A Hypothetical protein; p 48.1 8.8 0.0003 35.7 2.4 38 68-105 49-91 (371)
25 3gw7_A Uncharacterized protein 47.2 7.4 0.00025 34.1 1.7 41 63-103 22-63 (239)
26 4dmb_A HD domain-containing pr 46.3 7.3 0.00025 33.8 1.5 37 68-104 44-83 (204)
27 2paq_A 5'-deoxynucleotidase YF 46.3 8.1 0.00028 32.8 1.8 37 68-104 30-76 (201)
28 3m5f_A Metal dependent phospho 44.3 11 0.00037 34.0 2.3 16 89-104 57-72 (244)
29 1chu_A Protein (L-aspartate ox 39.2 28 0.00096 33.0 4.5 52 31-82 443-501 (540)
30 2l3i_A Aoxki4A, antimicrobial 33.5 35 0.0012 21.5 2.8 25 167-199 6-30 (30)
31 3aql_A Poly(A) polymerase; tra 31.8 18 0.00063 33.9 1.9 36 69-104 266-303 (415)
32 2gz4_A Hypothetical protein AT 31.2 33 0.0011 29.8 3.3 62 43-104 26-91 (207)
33 1vj7_A Bifunctional RELA/SPOT; 29.9 37 0.0012 32.1 3.6 53 47-100 27-79 (393)
34 2ksn_A Ubiquitin domain-contai 29.8 74 0.0025 26.5 5.0 47 27-84 34-83 (137)
35 2dqb_A Deoxyguanosinetriphosph 24.7 24 0.00083 33.1 1.3 36 69-104 75-114 (376)
36 2e5v_A L-aspartate oxidase; ar 24.1 49 0.0017 30.6 3.3 39 31-81 398-436 (472)
37 2q14_A Phosphohydrolase; BT420 24.0 18 0.00062 34.3 0.3 14 91-104 89-102 (410)
38 3u1n_A SAM domain and HD domai 22.3 52 0.0018 32.5 3.2 14 91-104 101-114 (528)
39 1dqu_A Isocitrate lyase; beta 22.3 43 0.0015 33.2 2.6 39 66-104 396-450 (538)
40 3mzo_A LIN2634 protein; HD-dom 20.9 62 0.0021 27.9 3.1 37 68-104 29-74 (216)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=5.4e-145 Score=991.49 Aligned_cols=256 Identities=50% Similarity=0.957 Sum_probs=251.3
Q ss_pred CCcccchhhhHHHHHHHHHhhhcchHHHHHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH
Q 024774 3 RDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR 82 (262)
Q Consensus 3 R~Y~~~~~~~~~V~~fY~~~h~~QT~~fv~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR 82 (262)
|||++ +++++||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||
T Consensus 33 R~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR 111 (289)
T 2huo_A 33 RNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIR 111 (289)
T ss_dssp CCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHH
T ss_pred hCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHH
Confidence 89986 66789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCchhhhhhhccccchhccCCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCC
Q 024774 83 KDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCG 161 (262)
Q Consensus 83 ~d~~~pdW~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e-~f~~NPD~~~p~ynT~~GiY~~~CG 161 (262)
+|||..||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|++|||.+||+|||+||||+||||
T Consensus 112 ~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F~~NpD~~~p~YnTk~GiY~p~CG 188 (289)
T 2huo_A 112 KAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCG 188 (289)
T ss_dssp HHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSCTTCGGGGSTTTSSSSTTCCTTCC
T ss_pred HhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhccCCCCCCCccccccCCcccCCCC
Confidence 997777999999999999999987 499999999999999999999999999 9999999999999999999999999
Q ss_pred ccccccccCcchhHHHHHHhCCCCCChhhhHHhHhccccccccccccccccChhhHHHHHHHHhcCCccceecCCCCCCh
Q 024774 162 LDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDV 241 (262)
Q Consensus 162 LdnV~mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~DLYsKs~~~pdv 241 (262)
||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++|||
T Consensus 189 LdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~~l~wv~~Fn~yDLYSKs~~~pdv 268 (289)
T 2huo_A 189 LENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDLYTKCPDLPDV 268 (289)
T ss_dssp GGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHHHHHHHHHHHHHHHHTCCSSCCCH
T ss_pred ccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHHHHHHHHHhCcccccccCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHcCCCCCC
Q 024774 242 EKVKPYYLSLIEKYFPAKLKW 262 (262)
Q Consensus 242 e~l~PYY~~LidKY~P~~l~W 262 (262)
|+|||||++|||||||++|+|
T Consensus 269 e~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 269 ESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHHHHHHHSCSCEEC
T ss_pred HHHHHHHHHHHHHHCCcccCC
Confidence 999999999999999999999
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1e-137 Score=930.38 Aligned_cols=247 Identities=50% Similarity=0.954 Sum_probs=234.0
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchh
Q 024774 13 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 92 (262)
Q Consensus 13 ~~V~~fY~~~h~~QT~~fv~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~q 92 (262)
+||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||++++||+|||||||+||+|+++.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred hhhhhccccchhccCCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCc
Q 024774 93 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 171 (262)
Q Consensus 93 LtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e-~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgH 171 (262)
||||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+|||+||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999976 489999999999999999999999999 99999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCChhhhHHhHhccccccccccccccccChhhHHHHHHHHhcCCccceecCCCCCChhhhhhhhHHH
Q 024774 172 DDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 251 (262)
Q Consensus 172 DEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~DLYsKs~~~pdve~l~PYY~~L 251 (262)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++||||+|||||++|
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 024774 252 IEKYFPAKLKW 262 (262)
Q Consensus 252 idKY~P~~l~W 262 (262)
||||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 99999999999
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.91 E-value=0.034 Score=46.15 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 024774 46 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 46 Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~---d~~-~pdW~qLtGliHDLGKvl 104 (262)
|++.++.+.|.+.+++ ....|.+.+|...+. .+| +++-..++||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7889999999987763 467899988876653 223 456688999999999975
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=93.87 E-value=0.038 Score=45.81 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 024774 46 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 46 Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~---d~~-~pdW~qLtGliHDLGKvl 104 (262)
|++.++.+.|.+.+++ ....|.+.+|...+. .+| +++=.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887652 467899988776653 223 345678999999999985
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.40 E-value=0.055 Score=45.30 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 024774 46 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 46 Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~---d~~-~pdW~qLtGliHDLGKvl 104 (262)
|++.++.+.|.+.+++ .-..|.+.+|...+. .+| +++-..++||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8899999999887652 457899988876653 223 456688999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=92.39 E-value=0.16 Score=44.98 Aligned_cols=130 Identities=19% Similarity=0.140 Sum_probs=78.5
Q ss_pred hccCCCccccHHHHHHHHH--------------hhhcCCCCCCCch-HHHHHHHHHHHHHh---hC--CCCCchhhhhhh
Q 024774 38 YGKLNRVEMSIWECCELLN--------------DVVDESDPDLDEP-QIEHLLQTAEAIRK---DY--PDEDWLHLTGLI 97 (262)
Q Consensus 38 ~~~~~~~~Msi~ea~e~L~--------------~lvDeSDPD~~l~-~i~H~lQTAEaiR~---d~--~~pdW~qLtGli 97 (262)
+.++.+.--||.+|+-.|- +.+....+..+.. -..|.+.+|..++. .. ++++=+-++||+
T Consensus 72 ~~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agll 151 (305)
T 3hc1_A 72 LYSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLL 151 (305)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3345677789999987761 1122222223322 35999998887763 22 356778899999
Q ss_pred ccccchhccCCCCCCCCceeecCceeeecccCCCccccccc---ccCCCCCCCCCCCCCCcccCCCCccccccccCcchh
Q 024774 98 HDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYF---KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDY 174 (262)
Q Consensus 98 HDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f---~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEY 174 (262)
||+||+.....+ .+.|. +.. ...|.. -.-.+.-.|-..|.+.
T Consensus 152 HDIGkl~l~~~~---------p~~~~------------~il~~~~~~~~~--------------l~~~E~~~~~~~H~~i 196 (305)
T 3hc1_A 152 HDVGEVFINFFR---------GKEFS------------QVVTLVDEEKIT--------------FGQAEERLFGTSHCEV 196 (305)
T ss_dssp TTHHHHHHHHHS---------HHHHH------------HHHHHHHHHCCC--------------HHHHHHHHHSSCHHHH
T ss_pred HHhhHHHHHHHH---------HHHHH------------HHHHHHHhcCCC--------------HHHHHHHHHCCCHHHH
Confidence 999999853111 01110 000 001100 0012334555679999
Q ss_pred HHHHHHhCCCCCChhhhHHhHhccccccccc
Q 024774 175 MYLVAKENKTTLPSAALFIIRYHSFYALHKS 205 (262)
Q Consensus 175 lY~Vlk~n~stLP~eaL~mIRyhSFypwH~~ 205 (262)
=+.+++. ..+|++...+||+|-- ||...
T Consensus 197 G~~ll~~--w~lp~~i~~~I~~HHe-~~~~~ 224 (305)
T 3hc1_A 197 GFALAKR--WSLNEFICDTILYHHD-IEAVP 224 (305)
T ss_dssp HHHHHHH--TTCCHHHHHHHHHTTC-GGGCS
T ss_pred HHHHHHH--cCCCHHHHHHHHHhCC-hhhcc
Confidence 9999997 5899999999999863 55443
No 7
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=91.71 E-value=0.15 Score=44.93 Aligned_cols=124 Identities=15% Similarity=0.240 Sum_probs=74.5
Q ss_pred ccCCCccccHHHHHHHHH-----h------h---hcCCCC-CCCch-HHHHHHHHHHHHHh---hCC--CCCchhhhhhh
Q 024774 39 GKLNRVEMSIWECCELLN-----D------V---VDESDP-DLDEP-QIEHLLQTAEAIRK---DYP--DEDWLHLTGLI 97 (262)
Q Consensus 39 ~~~~~~~Msi~ea~e~L~-----~------l---vDeSDP-D~~l~-~i~H~lQTAEaiR~---d~~--~pdW~qLtGli 97 (262)
.++.+.--||.+|+-+|= + + ++...+ ..++. -..|.+++|..++. ..+ +++-.-++||+
T Consensus 62 ~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agLL 141 (288)
T 3ljx_A 62 QGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGLL 141 (288)
T ss_dssp --CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 345667789999998761 1 1 121111 12333 35899999887764 223 56788999999
Q ss_pred ccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHH
Q 024774 98 HDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYL 177 (262)
Q Consensus 98 HDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~ 177 (262)
||+||+++...+ | +.|. +.+.. +.. ++ -.-.++-.+...|.|.=+.
T Consensus 142 hdiGkl~l~~~~---p------~~~~------------~il~~-~~~-~~-----------l~~~E~~~lg~~H~~vGa~ 187 (288)
T 3ljx_A 142 ADVGRLALATAW---P------EEYS------------ECLRK-ADG-EA-----------LIALERERFATDHDELTRM 187 (288)
T ss_dssp TTHHHHHHHHHC---H------HHHH------------HHHHH-CCH-HH-----------HHHHHHHHHSSCHHHHHHH
T ss_pred HhccHHHHHHHH---H------HHHH------------HHHHH-hhc-CC-----------HHHHHHHHHccCHHHHHHH
Confidence 999999864111 1 0010 11110 000 00 0112344556789999999
Q ss_pred HHHhCCCCCChhhhHHhHhcc
Q 024774 178 VAKENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 178 Vlk~n~stLP~eaL~mIRyhS 198 (262)
+++. -.||++...+||+|-
T Consensus 188 ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 188 LLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHH--TTCCHHHHHHHHHTT
T ss_pred HHHH--CCCCHHHHHHHHHHc
Confidence 9986 479999999999985
No 8
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=89.76 E-value=0.38 Score=41.97 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=72.3
Q ss_pred hccCCCccccHHHHHHHH--------------HhhhcCCCCCC--Cch-HHHHHHHHHHHHH---hh--------CCCCC
Q 024774 38 YGKLNRVEMSIWECCELL--------------NDVVDESDPDL--DEP-QIEHLLQTAEAIR---KD--------YPDED 89 (262)
Q Consensus 38 ~~~~~~~~Msi~ea~e~L--------------~~lvDeSDPD~--~l~-~i~H~lQTAEaiR---~d--------~~~pd 89 (262)
+..+.+.--||.+|+-.| .++++...|-. .+. -..|.+.+|..++ +. ..+++
T Consensus 69 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~ 148 (281)
T 3i7a_A 69 LYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYD 148 (281)
T ss_dssp TTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHH
T ss_pred HhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 445667778999999876 12233322211 112 3588888875544 22 24567
Q ss_pred chhhhhhhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 024774 90 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 169 (262)
Q Consensus 90 W~qLtGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSW 169 (262)
=.-++||+||+||+..+... +.+| +.+. + +. -++ -.+..
T Consensus 149 ~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~-~-----~~------------~~~-~~~~~ 187 (281)
T 3i7a_A 149 TLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT-T-----IE------------HLR-SLVRK 187 (281)
T ss_dssp HHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC-C-----HH------------HHH-HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc-C-----hH------------HHH-HHHhC
Confidence 78899999999999753111 0111 1111 0 00 011 22345
Q ss_pred CcchhHHHHHHhCCCCCChhhhHHhHhccc
Q 024774 170 GHDDYMYLVAKENKTTLPSAALFIIRYHSF 199 (262)
Q Consensus 170 gHDEYlY~Vlk~n~stLP~eaL~mIRyhSF 199 (262)
.|.+.=+.+++. -.+|++...+||+|-=
T Consensus 188 ~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 188 MQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 699999999987 4799999999999864
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=87.03 E-value=0.5 Score=40.42 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHH---HHH-HhhC-CCCCchhhhhhhccccc
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTA---EAI-RKDY-PDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTA---Eai-R~d~-~~pdW~qLtGliHDLGK 102 (262)
|.++.+.+...+...|+.- .+.|.+.++ ..| .+.. .+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3444455555555434433 466665554 445 5433 47888999999999997
No 10
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=85.31 E-value=0.62 Score=40.65 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=71.5
Q ss_pred cCCCccccHHHHHHHHH--------------hhhcCCCCCCCchH-HHHHHHHHHHHHhh----CCCCCchhhhhhhccc
Q 024774 40 KLNRVEMSIWECCELLN--------------DVVDESDPDLDEPQ-IEHLLQTAEAIRKD----YPDEDWLHLTGLIHDL 100 (262)
Q Consensus 40 ~~~~~~Msi~ea~e~L~--------------~lvDeSDPD~~l~~-i~H~lQTAEaiR~d----~~~pdW~qLtGliHDL 100 (262)
++.+.--||.+|+-.|= ..++. .|..++.. ..|.+.+|..++.- -.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34566778999887761 12222 22333443 47999888766531 2356778999999999
Q ss_pred cchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhHHHHHH
Q 024774 101 GKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAK 180 (262)
Q Consensus 101 GKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYlY~Vlk 180 (262)
||++....+ |+. +. .|. +..+ +. .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~------~~-------~i~--~~~~--~~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAV------AA-------TIS--AAVA--DG--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHH------HH-------HHH--HHHH--TT--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHH------HH-------HHH--HHHh--CC--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999854111 111 00 000 0000 00 000 112334455679999999999
Q ss_pred hCCCCCChhhhHHhHhcc
Q 024774 181 ENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 181 ~n~stLP~eaL~mIRyhS 198 (262)
. -.||++....||+|-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 6 479999999999985
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=84.11 E-value=0.83 Score=39.60 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccch
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 103 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~-~~pdW~qLtGliHDLGKv 103 (262)
|..+.+.+.+.....||.-++.-+.-.+.+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44455556666666667666666666667777775543 467889999999999984
No 12
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=82.50 E-value=0.98 Score=37.99 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh-CCCCCchhhhhhhccccchh
Q 024774 50 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 50 ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d-~~~pdW~qLtGliHDLGKvl 104 (262)
++.+.+...+...|+.-++.=+.-.+++|..|.+. -.+++-+.+++|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 34444445554445555544444445566666653 25778899999999999853
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=81.75 E-value=1.1 Score=37.56 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHH---HHHhhC-CCCCchhhhhhhccccch
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTAE---AIRKDY-PDEDWLHLTGLIHDLGKV 103 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAE---aiR~d~-~~pdW~qLtGliHDLGKv 103 (262)
+.++.+.+.......|+..+ ..|.+.++. .|.+.. .+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555666665554444443 466655554 444322 366788999999999874
No 14
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=81.45 E-value=1.3 Score=38.41 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccchh
Q 024774 48 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 48 i~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~-~~pdW~qLtGliHDLGKvl 104 (262)
|.++.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 44555556666666666666666666666777775432 4677889999999999853
No 15
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=81.24 E-value=0.75 Score=39.55 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccc
Q 024774 46 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGK 102 (262)
Q Consensus 46 Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~-~~pdW~qLtGliHDLGK 102 (262)
+-|.++.+.+...+...|+.-++.=+.-.+++|..|.+.. .+++=+.+.+|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455566666666654455555444444556666666532 57788899999999998
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=80.28 E-value=0.92 Score=40.54 Aligned_cols=47 Identities=32% Similarity=0.491 Sum_probs=34.4
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHh---------------hCCC-----CCchhhhhhhccccchhccCCC
Q 024774 60 DESDPDLDEPQIEHLLQTAEAIRK---------------DYPD-----EDWLHLTGLIHDLGKVLNLPSF 109 (262)
Q Consensus 60 DeSDPD~~l~~i~H~lQTAEaiR~---------------d~~~-----pdW~qLtGliHDLGKvl~l~~~ 109 (262)
-.|+.+- .|.+.|++-||+..+. ..|- .+|+...|++||+||.- +.|
T Consensus 17 ~ks~~~~-~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~f 83 (265)
T 3sk9_A 17 AKSGNPF-HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVF 83 (265)
T ss_dssp CBSSSTT-SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGG
T ss_pred hcCCCCc-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHH
Confidence 3444443 8899999999988664 1232 36999999999999995 456
No 17
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=77.71 E-value=1.4 Score=38.52 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred hccCCCccccHHHHHHHHH-----hhh------cC--CCCC---CCch-HHHHHHHHHHHHHhh---C--CCCCchhhhh
Q 024774 38 YGKLNRVEMSIWECCELLN-----DVV------DE--SDPD---LDEP-QIEHLLQTAEAIRKD---Y--PDEDWLHLTG 95 (262)
Q Consensus 38 ~~~~~~~~Msi~ea~e~L~-----~lv------De--SDPD---~~l~-~i~H~lQTAEaiR~d---~--~~pdW~qLtG 95 (262)
+..+.+.--||.+|+..|- +++ +. ++++ .+.. -..|.+.+|..+++- . .+++=.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3445666689999998772 111 11 1111 1222 347877776655432 1 2345677899
Q ss_pred hhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcchhH
Q 024774 96 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYM 175 (262)
Q Consensus 96 liHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDEYl 175 (262)
|+||+||+.....+....+ +.+...... + | .+-.-.+.-.+...|.+.=
T Consensus 156 LLHDIGkl~l~~~~p~~~~-------------------~~~il~~~~---------~-~--~~l~~~E~~~~g~~H~~iG 204 (297)
T 1vqr_A 156 MLLRLGIVIFSNFLIQNHK-------------------DKDFLAFLN---------K-N--ENLALAENEFLGVDHISFL 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHH---------H-H--CCHHHHHHHHTSSCHHHHH
T ss_pred HHHHccHHHHHHHChhhhh-------------------HHHHHHHHH---------c-C--CCHHHHHHHHHCCCHHHHH
Confidence 9999999985311100000 000000000 0 0 0001133445556799999
Q ss_pred HHHHHhCCCCCChhhhHHhHhcc
Q 024774 176 YLVAKENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 176 Y~Vlk~n~stLP~eaL~mIRyhS 198 (262)
+.+++.- .+|++....||+|-
T Consensus 205 a~ll~~w--~lp~~i~~aI~~Hh 225 (297)
T 1vqr_A 205 GFLLHRW--NFDDVLIESICFVR 225 (297)
T ss_dssp HHHHHHT--TCCHHHHHHHHTTT
T ss_pred HHHHHHC--CCCHHHHHHHHHhc
Confidence 9999864 79999999999996
No 18
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=77.55 E-value=1.2 Score=40.22 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=27.4
Q ss_pred CcchhHHHHHHhCCCCCChhhhHHhHhccccccccccccccccC
Q 024774 170 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMN 213 (262)
Q Consensus 170 gHDEYlY~Vlk~n~stLP~eaL~mIRyhSFypwH~~~~Y~~L~~ 213 (262)
.|.++=|.++.. +..+|++++.+||+|- -.|--.| =..|..
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~HH-Er~dGsG-P~gl~g 271 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQHE-ETINGTG-PKGLRE 271 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHTT-CCTBSCS-TTCCBG
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHhc-CCCCCCC-CCCCCc
Confidence 388999994433 4679999999999994 1233345 444443
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=75.47 E-value=1.3 Score=41.72 Aligned_cols=127 Identities=16% Similarity=0.268 Sum_probs=73.5
Q ss_pred ccCCCccccHHHHHH-HH--H---h------hhcC---C-C-CCCCchHHHHHHHHHHHHHh---hCC-----CCCchhh
Q 024774 39 GKLNRVEMSIWECCE-LL--N---D------VVDE---S-D-PDLDEPQIEHLLQTAEAIRK---DYP-----DEDWLHL 93 (262)
Q Consensus 39 ~~~~~~~Msi~ea~e-~L--~---~------lvDe---S-D-PD~~l~~i~H~lQTAEaiR~---d~~-----~pdW~qL 93 (262)
.++.+.--||.+|+- +| + + +.+. . + +..-..-..|.+.+|..++. ..+ +++=.-+
T Consensus 231 y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~afl 310 (457)
T 3mem_A 231 YAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYL 310 (457)
T ss_dssp TGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 345567789999987 43 1 1 1221 1 1 11112346899988876653 222 4456789
Q ss_pred hhhhccccchhccCCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCcch
Q 024774 94 TGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDD 173 (262)
Q Consensus 94 tGliHDLGKvl~l~~~~~~~QW~vvGdTfpVGC~f~~~iv~~e~f~~NPD~~~p~ynT~~GiY~~~CGLdnV~mSWgHDE 173 (262)
+||+||+||+.+...+ |+. |. .|. +..+.||... -.-.++-.+...|.|
T Consensus 311 aGLLhDIGkl~l~~~~---p~~------~~-------~i~--~~~~~~~~~~-------------~~~~E~~~lg~~H~~ 359 (457)
T 3mem_A 311 AGLLHNFGHLVLAQVF---PPH------FK-------LVC--RSLEVSPHID-------------SSVIEHYLLGITREQ 359 (457)
T ss_dssp HHHHTTTHHHHHHHHS---HHH------HH-------HHH--HHHHHCTTSC-------------HHHHHHHHHSSCHHH
T ss_pred HHHHHHhhHHHHHHHC---HHH------HH-------HHH--HHHHhcCCCC-------------HHHHHHHHHcCCHHH
Confidence 9999999999964111 100 00 000 0001122110 001234456678999
Q ss_pred hHHHHHHhCCCCCChhhhHHhHhcc
Q 024774 174 YMYLVAKENKTTLPSAALFIIRYHS 198 (262)
Q Consensus 174 YlY~Vlk~n~stLP~eaL~mIRyhS 198 (262)
.=+.+++. -.||++-...||||-
T Consensus 360 vGa~Ll~~--W~lP~~i~~aI~~HH 382 (457)
T 3mem_A 360 IAAQLMEN--WGMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHHHHH--cCCCHHHHHHHHHhc
Confidence 99999986 479999999999986
No 20
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=73.48 E-value=1.2 Score=42.64 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=27.9
Q ss_pred chHHHHHHH-H---HHHHHhhCCCC-----Cchhhhhhhccccchhc
Q 024774 68 EPQIEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 68 l~~i~H~lQ-T---AEaiR~d~~~p-----dW~qLtGliHDLGKvl~ 105 (262)
=.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 74 GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 74 CSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 345789999 5 67788888642 24456679999999974
No 21
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=53.76 E-value=7.4 Score=32.92 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHH---HHhhCCCCCc-----hhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEa---iR~d~~~pdW-----~qLtGliHDLGKvl 104 (262)
.+.-+|.+++|-. +-. ++.-|+ .-..+|+||+|.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 4567999998875 433 255676 45679999999988
No 22
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=49.35 E-value=24 Score=29.44 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhcCC-CCC-CCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccc
Q 024774 48 IWECCELLNDVVDES-DPD-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 100 (262)
Q Consensus 48 i~ea~e~L~~lvDeS-DPD-~~l~~i~H~lQTAEaiR~d~~~pdW-~qLtGliHDL 100 (262)
|.+|+++-....... +.+ +..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 566777666554433 233 5688999999999999855342233 4568899985
No 23
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=49.10 E-value=22 Score=29.80 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhcCC-CCCC-CchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccc
Q 024774 48 IWECCELLNDVVDES-DPDL-DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 100 (262)
Q Consensus 48 i~ea~e~L~~lvDeS-DPD~-~l~~i~H~lQTAEaiR~d~~~pdW-~qLtGliHDL 100 (262)
|.+|+++-....... ..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 445555555443322 2332 578899999999999766343354 5678899985
No 24
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=48.06 E-value=8.8 Score=35.73 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHhh---CCCC--Cchhhhhhhccccchhc
Q 024774 68 EPQIEHLLQTAEAIRKD---YPDE--DWLHLTGLIHDLGKVLN 105 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d---~~~p--dW~qLtGliHDLGKvl~ 105 (262)
-.-++|.+.+|..+|+- .+-+ +-..++||+||+|+.-+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 45678988888776642 2322 46789999999999873
No 25
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=47.23 E-value=7.4 Score=34.07 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccch
Q 024774 63 DPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 103 (262)
Q Consensus 63 DPD~~l~~i~H~lQTAEaiR~d~-~~pdW~qLtGliHDLGKv 103 (262)
|+.-++.-+.-.+.+|..|-+.. .+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44444544555555666665433 477889999999999995
No 26
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=46.31 E-value=7.3 Score=33.77 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC--chhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIRKDYP-DED--WLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR~d~~-~pd--W~qLtGliHDLGKvl 104 (262)
.+.-+|.+++|-..---.+ .-| =.-..+|+|||+.++
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~ 83 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI 83 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh
Confidence 4567999999876654322 223 345568999999987
No 27
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=46.30 E-value=8.1 Score=32.85 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHH-------hhCC---CCCchhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIR-------KDYP---DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR-------~d~~---~pdW~qLtGliHDLGKvl 104 (262)
-+..+|.+++|-... +.+| +++=..+.||+||+|+++
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~ 76 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVL 76 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccccc
Confidence 456799999886432 2333 334445569999999998
No 28
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=44.33 E-value=11 Score=33.96 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=14.1
Q ss_pred Cchhhhhhhccccchh
Q 024774 89 DWLHLTGLIHDLGKVL 104 (262)
Q Consensus 89 dW~qLtGliHDLGKvl 104 (262)
+++-++|+.||+||.-
T Consensus 57 ~ll~~a~llHDiGKa~ 72 (244)
T 3m5f_A 57 EFMKILIKLHDIGKAS 72 (244)
T ss_dssp HHHHHHHHHTTGGGGB
T ss_pred HHHHHHHHHcccccCC
Confidence 5577899999999997
No 29
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=39.23 E-value=28 Score=33.03 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHhccCCCccccHHHHHHHHHhhhcC-------CCCCCCchHHHHHHHHHHHHH
Q 024774 31 VKKMREEYGKLNRVEMSIWECCELLNDVVDE-------SDPDLDEPQIEHLLQTAEAIR 82 (262)
Q Consensus 31 v~~~~~~~~~~~~~~Msi~ea~e~L~~lvDe-------SDPD~~l~~i~H~lQTAEaiR 82 (262)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++.+|++|-
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~ 501 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIV 501 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 4555667888889889999999999877432 222223457889999999873
No 30
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=33.50 E-value=35 Score=21.46 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.0
Q ss_pred cccCcchhHHHHHHhCCCCCChhhhHHhHhccc
Q 024774 167 MSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 199 (262)
Q Consensus 167 mSWgHDEYlY~Vlk~n~stLP~eaL~mIRyhSF 199 (262)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999987
No 31
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=31.83 E-value=18 Score=33.94 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHH-HHhhCCCCCchhhhhhhc-cccchh
Q 024774 69 PQIEHLLQTAEA-IRKDYPDEDWLHLTGLIH-DLGKVL 104 (262)
Q Consensus 69 ~~i~H~lQTAEa-iR~d~~~pdW~qLtGliH-DLGKvl 104 (262)
...+|++++.+. |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 457888887544 666667788999999999 999964
No 32
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=31.24 E-value=33 Score=29.80 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=38.6
Q ss_pred CccccHHHHHHHHHhhhcCC---CCCCCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccccchh
Q 024774 43 RVEMSIWECCELLNDVVDES---DPDLDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLGKVL 104 (262)
Q Consensus 43 ~~~Msi~ea~e~L~~lvDeS---DPD~~l~~i~H~lQTAEaiR~d~~~pdW-~qLtGliHDLGKvl 104 (262)
.....|.+-++.|..+.--+ .-..-.+.-+|.+++|.....-+|.-|+ ..+.+|+||++.++
T Consensus 26 ~~~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 26 PLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GGGCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 34456666666664332111 1123467789999999977643332222 56778999999988
No 33
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=29.94 E-value=37 Score=32.11 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 024774 47 SIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 100 (262)
Q Consensus 47 si~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d~~~pdW~qLtGliHDL 100 (262)
-|.+|+++-.......-..+..|-|.|.+.+|+.+..-..+++ ...+||+||.
T Consensus 27 ~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 27 FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 3667777766654333333557889999999999986533333 6678999995
No 34
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=29.83 E-value=74 Score=26.50 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhccCC---CccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh
Q 024774 27 TYDFVKKMREEYGKLN---RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD 84 (262)
Q Consensus 27 T~~fv~~~~~~~~~~~---~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEaiR~d 84 (262)
|-+=..++|++|-.-- .++.-||+|+..--+++.+.| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 5556788999997644 578899999998887776554 5788888766
No 35
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=24.72 E-value=24 Score=33.09 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 024774 69 PQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 104 (262)
Q Consensus 69 ~~i~H~lQTAEaiR~---d~~-~pdW~qLtGliHDLGKvl 104 (262)
+-++|-+-+|...|. ..+ +++-....||+||+|+.-
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTCCS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCc
Confidence 345565555544332 222 346678899999999864
No 36
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=24.13 E-value=49 Score=30.58 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 024774 31 VKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAI 81 (262)
Q Consensus 31 v~~~~~~~~~~~~~~Msi~ea~e~L~~lvDeSDPD~~l~~i~H~lQTAEai 81 (262)
.++...++...-|.+-++.+|++.|+.|-.+ ++++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 5566677888889999999999999988542 77788776
No 37
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.99 E-value=18 Score=34.30 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.5
Q ss_pred hhhhhhhccccchh
Q 024774 91 LHLTGLIHDLGKVL 104 (262)
Q Consensus 91 ~qLtGliHDLGKvl 104 (262)
..++||+||+|+.=
T Consensus 89 ~~~AaLlHDiGh~P 102 (410)
T 2q14_A 89 VQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHTTTTCCT
T ss_pred HHHHHHHhccCCCc
Confidence 56778888888843
No 38
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=22.33 E-value=52 Score=32.52 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=10.6
Q ss_pred hhhhhhhccccchh
Q 024774 91 LHLTGLIHDLGKVL 104 (262)
Q Consensus 91 ~qLtGliHDLGKvl 104 (262)
++++||+||+|--=
T Consensus 101 v~~AaLlHDiGH~P 114 (528)
T 3u1n_A 101 VQIAGLCHDLGHGP 114 (528)
T ss_dssp HHHHHHHTTTTCBT
T ss_pred HHHHHHHhccCCCC
Confidence 56789999998543
No 39
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=22.25 E-value=43 Score=33.24 Aligned_cols=39 Identities=18% Similarity=0.452 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHHHHhhCCCC----------Cc---h---hhhhhhccccchh
Q 024774 66 LDEPQIEHLLQTAEAIRKDYPDE----------DW---L---HLTGLIHDLGKVL 104 (262)
Q Consensus 66 ~~l~~i~H~lQTAEaiR~d~~~p----------dW---~---qLtGliHDLGKvl 104 (262)
|..|.+.-+-+-||+||+.||+. .| | ++--|+-||||+=
T Consensus 396 t~~P~~~~a~~fa~~i~~~~P~~~LaYN~SPSFnW~~~~~d~~~~~f~~~l~~~G 450 (538)
T 1dqu_A 396 SKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPRDEQETYIKRLGALG 450 (538)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCEEEEECCSSSCGGGTSCHHHHHSHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCceEEecCCcchhhhhhCCHHHHHHHHHHHHhcC
Confidence 45688889999999999999853 34 2 6667777777763
No 40
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=20.91 E-value=62 Score=27.87 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHH------hhC-CCCCc--hhhhhhhccccchh
Q 024774 68 EPQIEHLLQTAEAIR------KDY-PDEDW--LHLTGLIHDLGKVL 104 (262)
Q Consensus 68 l~~i~H~lQTAEaiR------~d~-~~pdW--~qLtGliHDLGKvl 104 (262)
.+..+|.+++|-..- +.+ ++-|| .-+.+|+||++.++
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~ 74 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELF 74 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHH
Confidence 456788888765322 112 44566 67889999999988
Done!