BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024775
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 86 AWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG----------- 133
AW+ +YG +VL+F + + +P + ++V++KV AA++NP+D R G
Sbjct: 24 AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRD 83
Query: 134 --KFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEY 191
K P K FK GDEV+ + P + G+L+E+
Sbjct: 84 PLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEF 137
Query: 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
V ++ KPK+L QAA LP TA+ + + G
Sbjct: 138 VVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 175
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
T P+ + A + E G VL+ K+ PQ QVL+++ A+ NP+D K R G+
Sbjct: 4 TTPTXIAA-VVEEANGPFVLR---KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHA 59
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
PLP F+ GD V+G G Q G+ A++ AV+ RL
Sbjct: 60 QQPLPAILGXDLAGTVVAVGPEVDSFRVGDAVFGLTGGV---GGLQ-GTHAQFAAVDARL 115
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL 225
LA KP L QA+ LPL TA+EGL
Sbjct: 116 LASKPAALTXRQASVLPLVFITAWEGL 142
>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed
With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa
pdb|3B70|A Chain A, Crystal Structure Of Aspergillus Terreus Trans-Acting
Lovastatin Polyketide Enoyl Reductase (Lovc) With Bound
Nadp
Length = 371
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
P + DQV ++V A A+NP D K R G+F + L T +
Sbjct: 31 CPMLPRDQVYVRVEAVAINPSDTKMR-GQFATPWAFLGTDYAGTVVAVGSDVT----HIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
GD VYG NE P Q G+ ++YT R+ A PK L F QAA LP I TA
Sbjct: 86 VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTA 140
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 103 KVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXK 162
+ +P+ K ++L+K+ + ++NPVD K+R S P
Sbjct: 24 NLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV----SKAPRVLGFDAIGVVESVGNEVT 79
Query: 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222
F +GD VY P Q GS AEY + ERL+A PKN+ QA LPL TAY
Sbjct: 80 MFNQGDIVYYS------GSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAY 133
Query: 223 EGL 225
E L
Sbjct: 134 ETL 136
>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s
With Bound Nadp
Length = 371
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
P + DQV ++V A A+NP D R G+F + L T +
Sbjct: 31 CPMLPRDQVYVRVEAVAINPSDTSMR-GQFATPWAFLGTDYAGTVVAVGSDV----THIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
GD VYG NE P Q G+ ++YT R+ A PK L F QAA LP I TA
Sbjct: 86 VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTA 140
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
M+A E+GG +VLK + VP K+ QVLIKV A +NPV+ R G + + LP
Sbjct: 30 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SRKPLLP 88
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
FK+GD V+ G AEY + + P
Sbjct: 89 YTPGSDVAGVIEAVGDNASAFKKGDRVF--------TSSTISGGYAEYALAADHTVYKLP 140
Query: 204 KNLDFVQAAGLPLAIETAYEGL 225
+ LDF Q A + + TAY L
Sbjct: 141 EKLDFKQGAAIGIPYFTAYRAL 162
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
M+A + GG +VL+ + + VP+ +V +++ AAALN +D R+G + PLP
Sbjct: 1 MRAVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKG-VASPKLPLP 58
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDIN--------EKALEG-----PK------- 183
+ F GDEV IN E+ L G P+
Sbjct: 59 HVLGADGSGVVDAVGPGVEGFAPGDEVV--INPGLSCGRCERCLAGEDNLCPRYQILGEH 116
Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE 223
+ G+ AEY + E LAPKPKNL F +AA +PL TA++
Sbjct: 117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQ 156
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK---FKATD 139
E KA + ++G VLK + T P+ +++Q LIKV AA+LNP+D K R G K
Sbjct: 6 EXKAIQFDQFGPPKVLKLVDTPT-PEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLK 64
Query: 140 SPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERL 198
+ LP+ GD+V G + G P AEY
Sbjct: 65 NNLPSGLGYDFSGEVIELGSDVNNVNIGDKVXG------IAGFPDHPCCYAEYVCASPDT 118
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
+ K + L F+QAA LP A TA + L + G
Sbjct: 119 IIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQG 153
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
+ ++V P E +VL+KV A+ALN D +RQG++ P
Sbjct: 22 YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 76
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
+G GD L G G A+Y V E LL P P+ L QAA +P A
Sbjct: 77 ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 132
Query: 220 TAYEGLERTG 229
TA++ L G
Sbjct: 133 TAFQLLHLVG 142
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
+ ++V P E +VL+KV A+ALN D +RQG++ P
Sbjct: 38 YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 92
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
+G GD L G G A+Y V E LL P P+ L QAA +P A
Sbjct: 93 ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 148
Query: 220 TAYEGLERTG 229
TA++ L G
Sbjct: 149 TAFQLLHLVG 158
>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
pdb|4DVJ|B Chain B, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
Length = 363
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 96 DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTXXXXXXXXXX 154
D D ++ P +L++V A ++NPVD K RR TD +
Sbjct: 37 DASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKV---IGYDAAGIV 93
Query: 155 XXXXXXXKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA 212
F+ GDEV+ G I G+ AE+ V+ER++ KPK LD+ +AA
Sbjct: 94 SAVGPDVTLFRPGDEVFYAGSIIRP--------GTNAEFHLVDERIVGRKPKTLDWAEAA 145
Query: 213 GLPLAIETAYE 223
LPL TA+E
Sbjct: 146 ALPLTSITAWE 156
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 84 MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
MKAW+ GG ++++ E P+ +E +V+++V A LN D R G + P
Sbjct: 1 MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
F G EV G + + G LAE AV + L P
Sbjct: 56 --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
P+ L +AA P++ TAY L+R G+
Sbjct: 96 PEGLSPEEAAAFPVSFLTAYLALKRAQARPGE 127
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 26/146 (17%)
Query: 84 MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
MKAW+ GG ++++ E P+ +E +V+++V A LN D R G + P
Sbjct: 1 MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
F G EV G + + G LAE AV + L P
Sbjct: 56 --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERT 228
P+ L +AA P++ TAY L+R
Sbjct: 96 PEGLSPEEAAAFPVSFLTAYLALKRA 121
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 23/175 (13%)
Query: 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
T+P MKA + YG L+ +E V VP QVL+K+ A+ + D +G +
Sbjct: 2 TLPQTMKAAVVHAYGAP--LRIEE-VKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-V 57
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEV-------YGDINEKALEGPKQF------ 185
PLP KEGD V E L G +
Sbjct: 58 KPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN 117
Query: 186 ------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
G AEY + + PKN++F + A + A T Y+GL++T G+
Sbjct: 118 TGYSVNGGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNARPGQ 172
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
T+P + K L E GG DV+K+ E VP + E+++LIK +N ++ R+G +
Sbjct: 4 TIPEQQKVILIDEIGGYDVIKY-EDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY 59
>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|B Chain B, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|C Chain C, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|D Chain D, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A10|A Chain A, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|B Chain B, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|C Chain C, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|D Chain D, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp
Length = 447
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 34/157 (21%)
Query: 103 KVTVPQVKEDQVLIKVVAAALN----------PV------DGKRRQGKFKATDSPLPTXX 146
+V +P++ D+VL+ V+A+++N P+ RQG +
Sbjct: 54 EVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVL 113
Query: 147 XXXXXXXXXXXXXXXKEFKEGDEV--------------YGD----INEKALEGPKQFGSL 188
+ +K GD V +GD ++A FG L
Sbjct: 114 GSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGL 173
Query: 189 AEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
AEY V L PKP +L + +AA PL TAY L
Sbjct: 174 AEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRML 210
>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily
Protein (np_718042.1) From Shewanella Oneidensis At 1.55
A Resolution
Length = 315
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER 227
K+ GS AE+T + + P NL F +AA LP + TA++ E+
Sbjct: 93 KRHGSFAEFTVLNTDRVXTLPDNLSFERAAALPCPLLTAWQAFEK 137
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 23/177 (12%)
Query: 71 EAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKR 130
EA+ G++ MKA + +G L DE V +PQ Q+ + + A+ + D
Sbjct: 13 EAQTQGPGSMAKTMKAAVVRAFG--KPLTIDE-VPIPQPGPGQIQVAIQASGVCHTDLHA 69
Query: 131 RQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEV------------------YG 172
+G + +P P K KEGD V +
Sbjct: 70 AEGDWPVKPNP-PFIPGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWE 128
Query: 173 DINEKALE-GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT 228
+ E+ L G G AEY + + PKN+DF + A + A T Y+GL+ T
Sbjct: 129 TLCEEQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVT 185
>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
pdb|4DUP|B Chain B, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
Length = 353
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
++P E + +GG DV ++ +P E +VL++ A +N D +RQG +
Sbjct: 24 SLPQEXRFVDLKSFGGPDVXVIGKR-PLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPP 82
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
P + GD+V G N G+ AEY +
Sbjct: 83 KDASPILGLELSGEIVGVGPGVSG-YAVGDKVCGLANG---------GAYAEYCLLPAGQ 132
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGK 234
+ P PK D V+AA LP T + L + G + G+
Sbjct: 133 ILPFPKGYDAVKAAALPETFFTVWANLFQXAGLTEGE 169
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 164 FKEGDEVYGDINEKALEGPK------------------QFGSLAEYTAVEERLLAPKPKN 205
++ GDEV LE P FG LAE V+ L PKPK+
Sbjct: 157 WQPGDEVVAHCLSVELESPDGHDDTMLDPEQRIWGFETNFGGLAEIALVKTNQLMPKPKH 216
Query: 206 LDFVQAAGLPLAIETAYEGL 225
L + +AA L TAY L
Sbjct: 217 LTWEEAAAPGLVNSTAYRQL 236
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 17/147 (11%)
Query: 98 LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXX 157
LK E+ VP+ E ++++ +A +LN D K D P
Sbjct: 41 LKLAER-PVPEAGEHDIIVRTLAVSLNYRD-KLVLETGXGLDLAFPFVPASDXSGVVEAV 98
Query: 158 XXXXKEFKEGDEVYGDINEKALEGPK---------------QFGSLAEYTAVEERLLAPK 202
F+ GD V L+G + G L+EY + E
Sbjct: 99 GKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAA 158
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG 229
PK+LD +A+ LP A TA+ L G
Sbjct: 159 PKSLDAAEASTLPCAGLTAWFALVEKG 185
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
FG LAE V+ L PKP +L + +AA L TAY L
Sbjct: 177 NFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQL 218
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 88 LYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG-KRRQGKFKATDSPLPTXX 146
L E DV + ++ + +D VLIKV + +N DG + G + PL
Sbjct: 8 LQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPL---- 63
Query: 147 XXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL 206
F EGDEV E G + G L+EY +V L P P+NL
Sbjct: 64 ILGIDAAGTVVSSNDPRFAEGDEVIATSYEL---GVSRDGGLSEYASVPGDWLVPLPQNL 120
Query: 207 DFVQA-----AGLPLAIETAYEGLERTGFS 231
+A AG A+ + LE+ G S
Sbjct: 121 SLKEAXVYGTAGFTAAL--SVHRLEQNGLS 148
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
E + +P+ K QVLIK+ AA + D RQG+F
Sbjct: 16 EDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRF 49
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222
F+EGDEV E G FG +EY + L P PK L +A + A TA
Sbjct: 79 RFREGDEVIATGYEI---GVTHFGGYSEYARLHGEWLVPLPKGLTLKEAXAIGTAGFTAA 135
Query: 223 EGLER 227
+ R
Sbjct: 136 LSIHR 140
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
++P+ ++A +YG +G + + + + V+ V +K++AA +NP D QG +
Sbjct: 22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNY 78
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
G A Y V E + P P+N+ AA L T Y L R G GK
Sbjct: 133 GGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPGK 181
>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|B Chain B, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|C Chain C, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|D Chain D, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|E Chain E, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NTO|H Chain H, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon
Sulfolobus Solfataricus-Monoclinic Crystal Form
pdb|1NVG|A Chain A, N249y Mutant Of The Alcohol Dehydrogenase From The
Archaeon Sulfolobus Solfataricus-tetragonal Crystal Form
Length = 347
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
+++ VP+ K QVLIKV AA + D RQG+F
Sbjct: 16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRF 49
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 85 KAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-- 141
KAW+ GG ++++ E P+ +E +V+++V A LN D R G + P
Sbjct: 2 KAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLXRLGAYLTRLHPPF 57
Query: 142 LPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
+P Y + + G LAE AV + L P
Sbjct: 58 IPGXEVVGVVEGRR---------------YAALVPQ--------GGLAERVAVPKGALLP 94
Query: 202 KPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
P+ L +AA P++ TAY L+R G+
Sbjct: 95 LPEGLSPEEAAAFPVSFLTAYLALKRAQARPGE 127
>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
pdb|1R37|B Chain B, Alcohol Dehydrogenase From Sulfolobus Solfataricus
Complexed With Nad(H) And 2-Ethoxyethanol
Length = 347
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
+++ VP+ K QVLIKV AA + D RQG+F
Sbjct: 16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRF 49
>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|E Chain E, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
pdb|3I4C|H Chain H, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh)
Double Mutant (W95l,N249y)
Length = 347
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
+++ VP+ K QVLIKV AA + D RQG+F
Sbjct: 16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRF 49
>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus
Solfataricus
Length = 347
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
+++ VP+ K QVLIKV AA + D RQG+F
Sbjct: 16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRF 49
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135
P+ ++A +YG +G + + + + V+ V +K++AA +NP D QG +
Sbjct: 11 PARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNY 65
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 79 TVPSEMKAWL-----YGEYGGVDVLKFDE------KVTVPQVKEDQVLIKVVAAALNPVD 127
T+PSE KA L Y + L+ E ++ VP QVLIKV A++NP D
Sbjct: 6 TIPSEXKALLLVGDGYTKTPSGSALEAXEPYLEQGRIAVPAPGPSQVLIKVNLASINPSD 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,340,579
Number of Sequences: 62578
Number of extensions: 225584
Number of successful extensions: 439
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 43
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)