Query 024775
Match_columns 262
No_of_seqs 173 out of 1630
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 1.9E-37 4.2E-42 278.1 16.1 175 81-261 1-194 (339)
2 COG0604 Qor NADPH:quinone redu 100.0 9.2E-34 2E-38 256.9 19.7 168 84-259 1-169 (326)
3 KOG0023 Alcohol dehydrogenase, 100.0 5.5E-33 1.2E-37 243.6 15.4 180 78-261 4-209 (360)
4 KOG0024 Sorbitol dehydrogenase 100.0 8.4E-31 1.8E-35 230.3 15.0 172 82-259 3-195 (354)
5 KOG1197 Predicted quinone oxid 100.0 1E-29 2.3E-34 216.5 16.5 170 79-260 4-174 (336)
6 cd08239 THR_DH_like L-threonin 100.0 4.6E-29 1E-33 226.2 19.7 172 84-261 1-192 (339)
7 COG1062 AdhC Zn-dependent alco 100.0 1.1E-29 2.4E-34 224.9 14.7 170 83-259 2-211 (366)
8 KOG0025 Zn2+-binding dehydroge 100.0 2.7E-29 5.8E-34 217.3 16.7 173 78-260 14-188 (354)
9 PLN02740 Alcohol dehydrogenase 100.0 7.1E-29 1.5E-33 229.3 19.4 177 80-261 7-227 (381)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 9.6E-29 2.1E-33 227.5 19.5 173 84-261 1-220 (371)
11 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.8E-28 3.9E-33 222.5 19.6 172 86-261 1-193 (329)
12 TIGR02818 adh_III_F_hyde S-(hy 100.0 1.9E-28 4.1E-33 225.5 19.9 172 84-261 2-214 (368)
13 KOG0022 Alcohol dehydrogenase, 100.0 4.5E-29 9.8E-34 218.2 14.1 173 81-259 5-218 (375)
14 TIGR02819 fdhA_non_GSH formald 100.0 3.7E-28 7.9E-33 225.7 19.8 170 83-260 2-212 (393)
15 TIGR03451 mycoS_dep_FDH mycoth 100.0 4.2E-28 9.2E-33 222.1 19.3 171 83-260 1-204 (358)
16 PLN02586 probable cinnamyl alc 100.0 4.5E-28 9.7E-33 222.5 19.4 176 80-261 9-211 (360)
17 cd08301 alcohol_DH_plants Plan 100.0 6E-28 1.3E-32 221.8 19.7 173 83-261 2-216 (369)
18 TIGR01202 bchC 2-desacetyl-2-h 100.0 7.8E-28 1.7E-32 216.4 18.7 168 83-260 1-171 (308)
19 cd08300 alcohol_DH_class_III c 100.0 1.4E-27 3E-32 219.5 19.3 173 83-261 2-215 (368)
20 cd08292 ETR_like_2 2-enoyl thi 100.0 2.4E-27 5.2E-32 212.6 19.6 167 84-261 1-168 (324)
21 PRK09880 L-idonate 5-dehydroge 100.0 2.4E-27 5.3E-32 215.9 19.2 168 83-259 4-195 (343)
22 cd08230 glucose_DH Glucose deh 100.0 3.1E-27 6.8E-32 216.0 18.3 171 84-261 1-200 (355)
23 cd08237 ribitol-5-phosphate_DH 100.0 3.5E-27 7.6E-32 215.0 18.2 168 84-260 3-192 (341)
24 PLN02178 cinnamyl-alcohol dehy 100.0 6.8E-27 1.5E-31 215.9 19.7 175 83-261 4-206 (375)
25 PLN02514 cinnamyl-alcohol dehy 100.0 7.7E-27 1.7E-31 213.9 19.9 175 81-261 7-208 (357)
26 cd08277 liver_alcohol_DH_like 100.0 8.8E-27 1.9E-31 214.0 19.9 172 83-261 2-213 (365)
27 cd08291 ETR_like_1 2-enoyl thi 100.0 6.5E-27 1.4E-31 211.0 18.5 167 84-261 1-172 (324)
28 PLN02827 Alcohol dehydrogenase 99.9 8.6E-27 1.9E-31 215.4 19.7 168 83-259 12-219 (378)
29 TIGR02817 adh_fam_1 zinc-bindi 99.9 1.7E-26 3.7E-31 208.4 18.0 168 85-261 1-178 (336)
30 cd08274 MDR9 Medium chain dehy 99.9 4.7E-26 1E-30 206.7 19.8 178 84-261 1-206 (350)
31 cd08296 CAD_like Cinnamyl alco 99.9 1.6E-25 3.6E-30 202.7 20.3 172 84-261 1-191 (333)
32 PTZ00354 alcohol dehydrogenase 99.9 1.8E-25 3.9E-30 200.8 20.2 168 83-261 1-169 (334)
33 cd08238 sorbose_phosphate_red 99.9 1.3E-25 2.8E-30 209.5 19.7 172 83-258 2-201 (410)
34 TIGR03201 dearomat_had 6-hydro 99.9 9.6E-26 2.1E-30 205.8 18.1 169 87-261 2-194 (349)
35 cd08233 butanediol_DH_like (2R 99.9 1.4E-25 3E-30 204.5 18.9 172 84-261 1-201 (351)
36 PRK10309 galactitol-1-phosphat 99.9 2E-25 4.3E-30 203.2 19.6 167 84-259 1-186 (347)
37 cd08231 MDR_TM0436_like Hypoth 99.9 2.1E-25 4.7E-30 203.9 19.8 171 85-261 2-206 (361)
38 cd08290 ETR 2-enoyl thioester 99.9 1.3E-25 2.8E-30 203.3 17.8 169 84-261 1-175 (341)
39 PRK10754 quinone oxidoreductas 99.9 3E-25 6.6E-30 199.7 18.8 168 83-261 1-169 (327)
40 cd08295 double_bond_reductase_ 99.9 3.7E-25 8.1E-30 200.8 18.5 163 84-261 8-180 (338)
41 cd05284 arabinose_DH_like D-ar 99.9 5.9E-25 1.3E-29 198.9 19.5 174 84-261 1-196 (340)
42 cd08293 PTGR2 Prostaglandin re 99.9 3.5E-25 7.6E-30 200.9 17.9 155 95-261 20-184 (345)
43 cd08299 alcohol_DH_class_I_II_ 99.9 5E-25 1.1E-29 203.1 19.1 171 84-261 8-219 (373)
44 cd08270 MDR4 Medium chain dehy 99.9 9.4E-25 2E-29 194.2 19.8 161 84-261 1-161 (305)
45 PRK10083 putative oxidoreducta 99.9 8.6E-25 1.9E-29 197.9 19.5 169 84-260 1-188 (339)
46 PRK09422 ethanol-active dehydr 99.9 8.9E-25 1.9E-29 197.6 19.5 171 84-261 1-191 (338)
47 cd08294 leukotriene_B4_DH_like 99.9 7.9E-25 1.7E-29 196.9 19.1 158 83-261 2-172 (329)
48 cd08264 Zn_ADH_like2 Alcohol d 99.9 7.7E-25 1.7E-29 196.9 18.8 173 84-261 1-191 (325)
49 cd08244 MDR_enoyl_red Possible 99.9 1.6E-24 3.5E-29 194.1 20.4 170 84-261 1-171 (324)
50 cd08246 crotonyl_coA_red croto 99.9 1.2E-24 2.7E-29 201.5 20.2 182 79-261 8-222 (393)
51 cd08259 Zn_ADH5 Alcohol dehydr 99.9 1.4E-24 3E-29 194.9 19.9 173 84-261 1-191 (332)
52 PRK13771 putative alcohol dehy 99.9 1.5E-24 3.3E-29 195.8 19.9 173 84-261 1-191 (334)
53 cd08278 benzyl_alcohol_DH Benz 99.9 1.1E-24 2.4E-29 200.1 19.1 170 82-259 1-212 (365)
54 cd08285 NADP_ADH NADP(H)-depen 99.9 1.3E-24 2.8E-29 198.1 19.3 169 84-259 1-192 (351)
55 TIGR01751 crot-CoA-red crotony 99.9 1.5E-24 3.3E-29 201.4 19.9 182 79-261 3-218 (398)
56 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 1.8E-24 3.9E-29 193.8 19.5 171 84-261 1-175 (325)
57 COG1063 Tdh Threonine dehydrog 99.9 9.1E-25 2E-29 200.1 17.9 169 84-260 1-195 (350)
58 cd08250 Mgc45594_like Mgc45594 99.9 1.7E-24 3.8E-29 194.8 19.3 165 83-261 1-168 (329)
59 cd08282 PFDH_like Pseudomonas 99.9 2.6E-24 5.6E-29 198.3 20.1 170 84-261 1-205 (375)
60 cd08297 CAD3 Cinnamyl alcohol 99.9 2.9E-24 6.3E-29 194.6 20.1 175 84-261 1-194 (341)
61 cd05278 FDH_like Formaldehyde 99.9 2E-24 4.3E-29 195.8 18.9 170 84-260 1-195 (347)
62 cd08283 FDH_like_1 Glutathione 99.9 2.6E-24 5.6E-29 199.2 19.8 169 84-259 1-210 (386)
63 cd08298 CAD2 Cinnamyl alcohol 99.9 3.5E-24 7.6E-29 193.0 20.1 174 84-261 1-195 (329)
64 cd08273 MDR8 Medium chain dehy 99.9 4E-24 8.7E-29 192.2 20.3 167 84-261 1-168 (331)
65 cd08262 Zn_ADH8 Alcohol dehydr 99.9 2.8E-24 6E-29 194.7 19.3 170 84-260 1-188 (341)
66 PLN03154 putative allyl alcoho 99.9 5.6E-24 1.2E-28 194.5 21.1 167 81-261 6-187 (348)
67 cd08249 enoyl_reductase_like e 99.9 1.3E-24 2.9E-29 197.4 16.9 172 84-261 1-183 (339)
68 cd08248 RTN4I1 Human Reticulon 99.9 3.2E-24 7E-29 194.7 18.2 171 84-261 1-191 (350)
69 cd08243 quinone_oxidoreductase 99.9 4.9E-24 1.1E-28 190.0 19.1 170 84-261 1-171 (320)
70 cd08235 iditol_2_DH_like L-idi 99.9 7.9E-24 1.7E-28 191.8 20.3 170 84-261 1-194 (343)
71 cd08256 Zn_ADH2 Alcohol dehydr 99.9 6.2E-24 1.3E-28 193.5 19.6 171 84-260 1-201 (350)
72 cd05276 p53_inducible_oxidored 99.9 6.3E-24 1.4E-28 188.3 19.2 167 84-261 1-168 (323)
73 cd08288 MDR_yhdh Yhdh putative 99.9 8.7E-24 1.9E-28 189.7 19.9 171 84-261 1-175 (324)
74 cd05279 Zn_ADH1 Liver alcohol 99.9 6.4E-24 1.4E-28 195.0 19.4 169 84-259 1-209 (365)
75 cd08284 FDH_like_2 Glutathione 99.9 8.4E-24 1.8E-28 191.6 19.9 170 84-261 1-196 (344)
76 cd08289 MDR_yhfp_like Yhfp put 99.9 8.2E-24 1.8E-28 190.0 19.5 171 84-261 1-175 (326)
77 TIGR02825 B4_12hDH leukotriene 99.9 6.4E-24 1.4E-28 191.6 18.9 148 93-261 14-167 (325)
78 cd08279 Zn_ADH_class_III Class 99.9 9.5E-24 2.1E-28 193.6 19.7 170 84-260 1-210 (363)
79 cd08286 FDH_like_ADH2 formalde 99.9 8.4E-24 1.8E-28 192.0 19.0 171 84-261 1-195 (345)
80 cd05283 CAD1 Cinnamyl alcohol 99.9 8.9E-24 1.9E-28 191.7 19.0 171 85-261 1-197 (337)
81 cd08260 Zn_ADH6 Alcohol dehydr 99.9 1.5E-23 3.2E-28 190.4 20.3 172 84-261 1-193 (345)
82 cd08252 AL_MDR Arginate lyase 99.9 1.1E-23 2.4E-28 189.9 19.1 169 84-261 1-179 (336)
83 TIGR02823 oxido_YhdH putative 99.9 1.5E-23 3.2E-28 188.3 19.8 170 85-261 1-174 (323)
84 cd08254 hydroxyacyl_CoA_DH 6-h 99.9 1.5E-23 3.2E-28 188.9 19.3 174 84-261 1-193 (338)
85 cd08263 Zn_ADH10 Alcohol dehyd 99.9 1.3E-23 2.8E-28 192.9 19.1 169 84-259 1-213 (367)
86 cd08272 MDR6 Medium chain dehy 99.9 1.5E-23 3.3E-28 186.8 19.1 172 84-261 1-173 (326)
87 cd08236 sugar_DH NAD(P)-depend 99.9 1.4E-23 3E-28 190.3 19.1 169 84-261 1-188 (343)
88 cd08261 Zn_ADH7 Alcohol dehydr 99.9 2.4E-23 5.1E-28 188.5 19.7 169 84-261 1-187 (337)
89 cd08240 6_hydroxyhexanoate_dh_ 99.9 1.4E-23 3E-28 191.1 18.3 173 84-260 1-203 (350)
90 cd08242 MDR_like Medium chain 99.9 2.1E-23 4.5E-28 187.4 19.1 164 84-261 1-183 (319)
91 cd08253 zeta_crystallin Zeta-c 99.9 2.5E-23 5.4E-28 184.9 19.1 172 84-261 1-173 (325)
92 cd08234 threonine_DH_like L-th 99.9 3.2E-23 7E-28 186.9 19.2 167 84-259 1-185 (334)
93 cd08276 MDR7 Medium chain dehy 99.9 6.7E-23 1.5E-27 184.1 20.7 175 84-261 1-188 (336)
94 cd08271 MDR5 Medium chain dehy 99.9 6.2E-23 1.3E-27 183.3 20.1 169 84-261 1-170 (325)
95 cd08266 Zn_ADH_like1 Alcohol d 99.9 7.2E-23 1.6E-27 183.7 20.3 176 84-261 1-195 (342)
96 cd08258 Zn_ADH4 Alcohol dehydr 99.9 5.8E-23 1.3E-27 184.3 19.2 172 84-261 1-192 (306)
97 cd08287 FDH_like_ADH3 formalde 99.9 6.7E-23 1.5E-27 186.0 19.6 168 84-259 1-194 (345)
98 cd05282 ETR_like 2-enoyl thioe 99.9 8.9E-23 1.9E-27 182.7 18.5 161 90-261 4-167 (323)
99 cd05289 MDR_like_2 alcohol deh 99.9 1.1E-22 2.4E-27 179.8 18.4 171 84-261 1-173 (309)
100 PRK05396 tdh L-threonine 3-deh 99.9 1.1E-22 2.5E-27 184.4 18.9 170 84-259 1-189 (341)
101 cd08247 AST1_like AST1 is a cy 99.9 1.9E-22 4.1E-27 183.8 19.7 169 84-258 1-177 (352)
102 cd05285 sorbitol_DH Sorbitol d 99.9 1.9E-22 4.2E-27 183.2 19.1 169 87-261 2-191 (343)
103 cd08245 CAD Cinnamyl alcohol d 99.9 1.4E-22 3.1E-27 182.6 18.0 171 85-261 1-190 (330)
104 cd08268 MDR2 Medium chain dehy 99.9 2.8E-22 6E-27 178.6 19.4 172 84-261 1-173 (328)
105 TIGR02824 quinone_pig3 putativ 99.9 3.9E-22 8.4E-27 177.5 19.5 167 84-261 1-168 (325)
106 cd05286 QOR2 Quinone oxidoredu 99.9 5.6E-22 1.2E-26 175.6 19.6 164 85-261 1-165 (320)
107 cd08232 idonate-5-DH L-idonate 99.9 3.1E-22 6.7E-27 181.2 18.4 160 98-260 9-193 (339)
108 PLN02702 L-idonate 5-dehydroge 99.9 7.5E-22 1.6E-26 180.9 20.4 171 82-259 17-207 (364)
109 cd08269 Zn_ADH9 Alcohol dehydr 99.9 4.8E-22 1E-26 177.1 18.1 151 97-261 6-158 (312)
110 cd08267 MDR1 Medium chain dehy 99.9 5.6E-22 1.2E-26 176.7 18.1 167 88-261 2-172 (319)
111 cd08251 polyketide_synthase po 99.9 6E-22 1.3E-26 174.8 17.5 148 106-261 2-149 (303)
112 cd05288 PGDH Prostaglandin deh 99.9 1.3E-21 2.8E-26 175.9 19.3 163 84-261 2-174 (329)
113 KOG1198 Zinc-binding oxidoredu 99.9 7.5E-22 1.6E-26 180.0 17.3 167 82-257 3-182 (347)
114 cd05281 TDH Threonine dehydrog 99.9 1.3E-21 2.8E-26 177.6 18.7 171 84-260 1-191 (341)
115 cd08265 Zn_ADH3 Alcohol dehydr 99.9 2.2E-21 4.8E-26 179.4 19.9 173 82-261 27-232 (384)
116 cd08275 MDR3 Medium chain dehy 99.9 3.1E-21 6.7E-26 173.1 19.8 161 85-256 1-162 (337)
117 cd05188 MDR Medium chain reduc 99.9 5.5E-21 1.2E-25 166.0 16.8 147 113-261 1-162 (271)
118 cd08241 QOR1 Quinone oxidoredu 99.9 1.3E-20 2.9E-25 167.2 19.6 166 84-261 1-168 (323)
119 TIGR00692 tdh L-threonine 3-de 99.9 6.3E-21 1.4E-25 173.1 17.6 165 91-261 6-190 (340)
120 cd05195 enoyl_red enoyl reduct 99.8 4.9E-20 1.1E-24 160.7 16.2 136 112-261 1-137 (293)
121 smart00829 PKS_ER Enoylreducta 99.8 3.5E-19 7.7E-24 155.3 15.5 131 116-261 2-133 (288)
122 TIGR03366 HpnZ_proposed putati 99.8 1.9E-19 4.1E-24 159.7 13.4 114 145-259 1-146 (280)
123 COG2130 Putative NADP-dependen 99.8 1.6E-18 3.4E-23 151.8 15.0 150 96-261 25-179 (340)
124 PF08240 ADH_N: Alcohol dehydr 99.8 4.1E-18 8.9E-23 130.6 10.1 91 111-202 1-109 (109)
125 cd08255 2-desacetyl-2-hydroxye 99.7 1.5E-16 3.4E-21 139.8 12.6 108 140-261 18-126 (277)
126 KOG1196 Predicted NAD-dependen 99.6 1.6E-14 3.4E-19 126.5 17.0 163 84-261 4-182 (343)
127 KOG1202 Animal-type fatty acid 99.5 7.7E-14 1.7E-18 138.5 7.8 149 93-261 1424-1581(2376)
128 PRK09424 pntA NAD(P) transhydr 94.4 0.044 9.4E-07 52.9 4.0 31 230-261 162-192 (509)
129 PRK05476 S-adenosyl-L-homocyst 91.7 0.29 6.2E-06 46.3 5.0 41 220-261 197-239 (425)
130 PRK12771 putative glutamate sy 91.2 0.27 5.8E-06 48.1 4.4 32 229-261 133-164 (564)
131 cd00401 AdoHcyase S-adenosyl-L 90.8 0.25 5.4E-06 46.5 3.6 40 221-261 188-229 (413)
132 PF13823 ADH_N_assoc: Alcohol 90.7 0.27 5.8E-06 26.7 2.2 22 84-109 1-22 (23)
133 PRK08324 short chain dehydroge 90.1 0.26 5.6E-06 49.3 3.3 66 186-261 385-450 (681)
134 PRK00517 prmA ribosomal protei 89.3 0.57 1.2E-05 40.8 4.5 77 162-259 65-143 (250)
135 PRK08261 fabG 3-ketoacyl-(acyl 89.3 0.27 5.9E-06 46.4 2.6 36 226-261 27-66 (450)
136 PLN03209 translocon at the inn 89.0 0.44 9.6E-06 46.6 3.8 35 227-261 74-108 (576)
137 PF02826 2-Hacid_dh_C: D-isome 88.8 0.49 1.1E-05 39.0 3.5 32 229-261 32-63 (178)
138 TIGR00936 ahcY adenosylhomocys 88.7 0.72 1.6E-05 43.3 5.0 40 221-261 181-222 (406)
139 PRK08306 dipicolinate synthase 88.6 1.3 2.8E-05 39.8 6.3 29 232-261 151-179 (296)
140 TIGR00561 pntA NAD(P) transhyd 87.5 0.67 1.4E-05 44.8 4.0 30 231-261 162-191 (511)
141 cd05213 NAD_bind_Glutamyl_tRNA 86.9 0.36 7.9E-06 43.6 1.8 60 198-259 140-203 (311)
142 PRK05866 short chain dehydroge 85.7 0.91 2E-05 40.3 3.7 30 232-261 39-68 (293)
143 PF10686 DUF2493: Protein of u 85.2 1.5 3.2E-05 30.8 3.8 40 221-260 20-60 (71)
144 PRK00045 hemA glutamyl-tRNA re 84.6 1.1 2.3E-05 42.4 3.7 105 144-258 90-206 (423)
145 PRK06128 oxidoreductase; Provi 83.7 1.1 2.5E-05 39.7 3.4 30 232-261 54-83 (300)
146 TIGR00518 alaDH alanine dehydr 83.6 2 4.3E-05 39.9 5.0 28 233-261 167-194 (370)
147 PRK07985 oxidoreductase; Provi 83.6 1.2 2.6E-05 39.6 3.5 30 232-261 48-77 (294)
148 PLN02780 ketoreductase/ oxidor 82.8 1.4 3.1E-05 39.8 3.7 30 232-261 52-81 (320)
149 PLN02494 adenosylhomocysteinas 81.9 1.5 3.3E-05 41.9 3.6 39 222-261 241-281 (477)
150 PTZ00414 10 kDa heat shock pro 80.8 3.2 7E-05 31.1 4.3 47 151-201 46-96 (100)
151 PRK08261 fabG 3-ketoacyl-(acyl 80.3 1.9 4E-05 40.7 3.7 30 232-261 209-238 (450)
152 PRK14175 bifunctional 5,10-met 80.0 4.5 9.7E-05 36.2 5.8 49 213-261 137-186 (286)
153 PRK06701 short chain dehydroge 79.9 2.1 4.6E-05 37.9 3.7 32 230-261 43-74 (290)
154 PRK07424 bifunctional sterol d 79.5 2.1 4.6E-05 40.3 3.7 30 232-261 177-206 (406)
155 PRK00364 groES co-chaperonin G 79.5 3.7 8.1E-05 30.4 4.3 24 150-173 36-68 (95)
156 PLN02572 UDP-sulfoquinovose sy 79.5 2 4.4E-05 40.7 3.6 31 231-261 45-75 (442)
157 PF02353 CMAS: Mycolic acid cy 79.2 1.3 2.8E-05 39.3 2.1 35 225-261 55-89 (273)
158 cd00320 cpn10 Chaperonin 10 Kd 79.1 4.4 9.5E-05 29.9 4.6 24 150-173 35-67 (93)
159 PRK14533 groES co-chaperonin G 78.7 5.3 0.00011 29.4 4.8 48 150-201 36-87 (91)
160 cd05212 NAD_bind_m-THF_DH_Cycl 78.6 6.7 0.00015 31.2 5.8 49 213-261 7-56 (140)
161 PLN02686 cinnamoyl-CoA reducta 78.4 2.6 5.6E-05 38.8 3.9 32 230-261 50-81 (367)
162 KOG1201 Hydroxysteroid 17-beta 78.0 2.7 5.9E-05 37.7 3.7 31 230-260 35-65 (300)
163 PRK08410 2-hydroxyacid dehydro 77.4 2.4 5.3E-05 38.3 3.4 29 232-261 144-172 (311)
164 PRK06932 glycerate dehydrogena 77.4 2.3 5.1E-05 38.5 3.2 29 232-261 146-174 (314)
165 PLN02206 UDP-glucuronate decar 77.3 2.7 5.8E-05 40.0 3.7 30 232-261 118-147 (442)
166 PTZ00075 Adenosylhomocysteinas 77.3 7.4 0.00016 37.4 6.6 31 230-261 251-281 (476)
167 PRK06487 glycerate dehydrogena 76.2 2.7 5.8E-05 38.1 3.3 29 232-261 147-175 (317)
168 TIGR02853 spore_dpaA dipicolin 75.8 3.2 7E-05 37.1 3.6 29 232-261 150-178 (287)
169 cd01080 NAD_bind_m-THF_DH_Cycl 75.6 8.8 0.00019 31.5 5.9 49 212-261 22-72 (168)
170 PLN02928 oxidoreductase family 75.5 3.1 6.6E-05 38.3 3.5 29 232-261 158-186 (347)
171 PF02882 THF_DHG_CYH_C: Tetrah 75.3 5 0.00011 32.8 4.3 50 212-261 14-64 (160)
172 PRK12550 shikimate 5-dehydroge 75.2 6.1 0.00013 35.1 5.2 36 223-259 112-147 (272)
173 PRK06484 short chain dehydroge 75.1 3.4 7.3E-05 39.6 3.8 31 231-261 267-297 (520)
174 PRK14191 bifunctional 5,10-met 74.5 7.9 0.00017 34.7 5.7 49 213-261 136-185 (285)
175 PF12242 Eno-Rase_NADH_b: NAD( 73.9 3.5 7.6E-05 29.4 2.6 30 230-259 36-66 (78)
176 PLN02657 3,8-divinyl protochlo 73.7 4.2 9.2E-05 37.8 4.0 33 229-261 56-88 (390)
177 TIGR01035 hemA glutamyl-tRNA r 73.6 7.3 0.00016 36.7 5.6 101 144-258 88-204 (417)
178 COG2518 Pcm Protein-L-isoaspar 73.1 4.5 9.9E-05 34.5 3.7 36 224-262 64-99 (209)
179 PRK14189 bifunctional 5,10-met 73.0 7.4 0.00016 34.8 5.2 49 213-261 137-186 (285)
180 cd01079 NAD_bind_m-THF_DH NAD 72.7 7.4 0.00016 32.9 4.8 49 213-261 32-90 (197)
181 PLN02166 dTDP-glucose 4,6-dehy 72.3 4.3 9.4E-05 38.4 3.8 31 231-261 118-148 (436)
182 KOG1208 Dehydrogenases with di 72.2 4 8.6E-05 37.1 3.3 31 231-261 33-63 (314)
183 TIGR02632 RhaD_aldol-ADH rhamn 71.8 4.2 9E-05 40.8 3.7 30 232-261 413-442 (676)
184 COG2230 Cfa Cyclopropane fatty 70.4 6.3 0.00014 35.2 4.1 35 225-261 65-99 (283)
185 PRK14192 bifunctional 5,10-met 70.3 12 0.00025 33.5 5.8 38 224-261 149-187 (283)
186 COG0334 GdhA Glutamate dehydro 70.1 9.7 0.00021 35.8 5.4 51 209-261 183-234 (411)
187 PF13241 NAD_binding_7: Putati 70.0 2.9 6.3E-05 31.2 1.7 29 232-261 6-34 (103)
188 PRK06436 glycerate dehydrogena 70.0 5.2 0.00011 36.1 3.6 29 232-261 121-149 (303)
189 COG0111 SerA Phosphoglycerate 69.8 4.9 0.00011 36.6 3.4 28 233-261 142-169 (324)
190 PRK11873 arsM arsenite S-adeno 69.0 6.2 0.00014 34.5 3.8 30 227-258 72-101 (272)
191 PRK12548 shikimate 5-dehydroge 68.2 6.3 0.00014 35.2 3.7 28 231-259 124-151 (289)
192 PRK15438 erythronate-4-phospha 67.8 6.1 0.00013 36.9 3.6 30 231-261 114-143 (378)
193 PRK11790 D-3-phosphoglycerate 67.6 6 0.00013 37.2 3.6 29 232-261 150-178 (409)
194 PRK14031 glutamate dehydrogena 67.4 12 0.00027 35.6 5.6 36 225-261 219-255 (444)
195 PF00070 Pyr_redox: Pyridine n 67.2 7.5 0.00016 27.2 3.3 26 235-261 1-26 (80)
196 PRK05579 bifunctional phosphop 67.0 6.2 0.00014 37.0 3.6 31 231-261 186-232 (399)
197 PRK07201 short chain dehydroge 66.9 6.1 0.00013 39.0 3.7 30 232-261 370-399 (657)
198 PRK10792 bifunctional 5,10-met 66.8 13 0.00027 33.4 5.3 49 213-261 138-187 (285)
199 PRK13243 glyoxylate reductase; 66.7 6.5 0.00014 35.9 3.6 29 232-261 149-177 (333)
200 PF11017 DUF2855: Protein of u 66.7 58 0.0013 29.6 9.5 99 151-254 38-157 (314)
201 PTZ00079 NADP-specific glutama 66.7 14 0.0003 35.3 5.8 30 231-261 235-264 (454)
202 KOG2862 Alanine-glyoxylate ami 66.5 9.3 0.0002 34.7 4.3 39 221-260 80-118 (385)
203 COG1052 LdhA Lactate dehydroge 66.4 5.8 0.00013 36.2 3.1 29 232-261 145-173 (324)
204 PRK14030 glutamate dehydrogena 65.9 15 0.00031 35.1 5.8 36 225-261 219-255 (445)
205 cd05313 NAD_bind_2_Glu_DH NAD( 65.9 16 0.00034 32.2 5.6 35 226-261 30-65 (254)
206 COG0234 GroS Co-chaperonin Gro 65.9 11 0.00023 28.1 3.8 22 151-172 37-67 (96)
207 PRK05855 short chain dehydroge 65.8 6.7 0.00015 37.7 3.7 30 232-261 314-343 (582)
208 PRK15409 bifunctional glyoxyla 65.8 6 0.00013 36.0 3.1 29 232-261 144-173 (323)
209 PRK15469 ghrA bifunctional gly 65.6 7.2 0.00016 35.3 3.6 29 232-261 135-163 (312)
210 PRK14176 bifunctional 5,10-met 65.6 14 0.00031 33.1 5.3 49 213-261 143-192 (287)
211 PRK00258 aroE shikimate 5-dehy 65.5 7.4 0.00016 34.4 3.6 29 231-260 121-150 (278)
212 PF00166 Cpn10: Chaperonin 10 64.4 20 0.00043 26.3 5.1 26 149-174 34-68 (93)
213 PRK14190 bifunctional 5,10-met 63.7 15 0.00034 32.8 5.2 49 213-261 137-186 (284)
214 PRK14172 bifunctional 5,10-met 63.5 16 0.00034 32.7 5.2 49 213-261 137-186 (278)
215 PRK14188 bifunctional 5,10-met 63.2 17 0.00038 32.7 5.5 49 213-261 137-186 (296)
216 PRK13656 trans-2-enoyl-CoA red 63.0 7.7 0.00017 36.3 3.3 29 231-260 39-69 (398)
217 PRK00257 erythronate-4-phospha 62.5 8.8 0.00019 35.8 3.6 31 230-261 113-143 (381)
218 TIGR01809 Shik-DH-AROM shikima 62.1 15 0.00033 32.5 5.0 27 232-259 124-150 (282)
219 PRK14194 bifunctional 5,10-met 62.1 17 0.00038 32.8 5.3 49 213-261 138-187 (301)
220 PLN02516 methylenetetrahydrofo 61.9 15 0.00033 33.1 4.9 49 213-261 146-195 (299)
221 TIGR01318 gltD_gamma_fam gluta 61.8 9.1 0.0002 36.5 3.7 29 232-261 140-168 (467)
222 PRK14177 bifunctional 5,10-met 61.2 16 0.00035 32.7 4.9 49 213-261 138-187 (284)
223 PRK07574 formate dehydrogenase 61.0 9.4 0.0002 35.7 3.5 29 232-261 191-219 (385)
224 PRK14027 quinate/shikimate deh 60.6 18 0.00038 32.3 5.1 28 231-259 125-152 (283)
225 PRK14179 bifunctional 5,10-met 60.6 16 0.00034 32.8 4.7 49 213-261 137-186 (284)
226 PLN02477 glutamate dehydrogena 60.5 21 0.00045 33.8 5.7 36 225-261 197-233 (410)
227 PRK14180 bifunctional 5,10-met 60.1 17 0.00037 32.5 4.9 49 213-261 137-186 (282)
228 PRK12769 putative oxidoreducta 59.9 9.9 0.00021 37.9 3.7 29 232-261 326-354 (654)
229 PRK12480 D-lactate dehydrogena 59.9 10 0.00023 34.5 3.6 29 232-261 145-173 (330)
230 PRK14183 bifunctional 5,10-met 59.6 20 0.00044 32.0 5.2 49 213-261 136-185 (281)
231 KOG2018 Predicted dinucleotide 59.4 10 0.00022 34.5 3.3 38 221-259 62-99 (430)
232 PRK12749 quinate/shikimate deh 58.9 21 0.00045 31.9 5.3 26 232-258 123-148 (288)
233 PRK08125 bifunctional UDP-gluc 58.9 9.8 0.00021 38.0 3.5 32 230-261 312-344 (660)
234 PRK12549 shikimate 5-dehydroge 58.8 13 0.00028 33.2 3.9 27 231-258 125-151 (284)
235 PRK14169 bifunctional 5,10-met 58.6 22 0.00047 31.9 5.2 49 213-261 135-184 (282)
236 PRK14173 bifunctional 5,10-met 58.6 22 0.00047 31.9 5.2 49 213-261 134-183 (287)
237 TIGR00507 aroE shikimate 5-deh 58.4 23 0.0005 31.0 5.5 30 230-260 114-143 (270)
238 PLN02306 hydroxypyruvate reduc 57.8 10 0.00022 35.4 3.2 29 232-261 164-193 (386)
239 PRK14170 bifunctional 5,10-met 57.5 22 0.00048 31.8 5.1 49 213-261 136-185 (284)
240 cd05191 NAD_bind_amino_acid_DH 57.4 17 0.00036 25.9 3.6 26 231-257 21-46 (86)
241 PRK00377 cbiT cobalt-precorrin 56.8 12 0.00026 31.2 3.2 35 225-261 33-69 (198)
242 PRK14187 bifunctional 5,10-met 56.2 24 0.00052 31.8 5.1 49 213-261 139-188 (294)
243 PRK14166 bifunctional 5,10-met 56.2 24 0.00053 31.5 5.2 49 213-261 136-185 (282)
244 PLN02520 bifunctional 3-dehydr 56.0 12 0.00027 36.4 3.5 29 232-261 378-406 (529)
245 PRK12809 putative oxidoreducta 55.5 12 0.00027 37.2 3.5 29 232-261 309-337 (639)
246 PRK09414 glutamate dehydrogena 55.1 28 0.00061 33.2 5.7 37 224-261 222-259 (445)
247 KOG0089 Methylenetetrahydrofol 54.5 18 0.00039 32.2 3.9 51 212-262 144-195 (309)
248 PRK14171 bifunctional 5,10-met 54.5 26 0.00057 31.4 5.1 49 213-261 138-187 (288)
249 PRK14186 bifunctional 5,10-met 54.4 26 0.00056 31.6 5.0 48 214-261 138-186 (297)
250 KOG1014 17 beta-hydroxysteroid 54.4 11 0.00025 34.0 2.8 30 231-261 47-77 (312)
251 TIGR02964 xanthine_xdhC xanthi 54.0 16 0.00034 31.9 3.6 33 228-261 95-127 (246)
252 PLN03139 formate dehydrogenase 53.8 14 0.00031 34.5 3.4 29 232-261 198-226 (386)
253 KOG1203 Predicted dehydrogenas 53.5 14 0.00029 34.9 3.2 32 229-260 75-106 (411)
254 COG0075 Serine-pyruvate aminot 53.3 22 0.00047 33.3 4.5 42 219-261 66-107 (383)
255 PRK14182 bifunctional 5,10-met 52.8 31 0.00066 30.9 5.2 48 214-261 137-185 (282)
256 PRK11705 cyclopropane fatty ac 52.1 19 0.0004 33.6 3.9 40 220-261 154-194 (383)
257 COG0169 AroE Shikimate 5-dehyd 51.5 20 0.00044 32.0 3.9 27 231-258 124-150 (283)
258 PF01135 PCMT: Protein-L-isoas 51.0 20 0.00044 30.5 3.7 33 224-258 64-96 (209)
259 PRK12810 gltD glutamate syntha 50.0 19 0.00041 34.3 3.8 30 231-261 141-170 (471)
260 TIGR00406 prmA ribosomal prote 49.9 37 0.0008 30.2 5.4 26 230-258 157-182 (288)
261 PRK14178 bifunctional 5,10-met 49.0 32 0.0007 30.7 4.8 49 213-261 131-180 (279)
262 PF13580 SIS_2: SIS domain; PD 48.8 29 0.00063 27.1 4.1 35 227-261 98-134 (138)
263 PRK14193 bifunctional 5,10-met 48.6 37 0.00079 30.4 5.1 48 214-261 138-188 (284)
264 TIGR02813 omega_3_PfaA polyket 48.6 19 0.0004 41.9 3.9 32 230-261 1994-2026(2582)
265 PRK12831 putative oxidoreducta 48.3 21 0.00045 34.1 3.7 30 230-260 137-166 (464)
266 PF06325 PrmA: Ribosomal prote 48.0 20 0.00044 32.2 3.4 76 164-259 108-185 (295)
267 PRK13581 D-3-phosphoglycerate 47.8 19 0.00041 35.0 3.4 29 232-261 139-167 (526)
268 PRK12814 putative NADPH-depend 47.7 21 0.00046 35.7 3.8 30 231-261 191-220 (652)
269 PRK14181 bifunctional 5,10-met 47.2 41 0.00088 30.2 5.1 49 213-261 132-185 (287)
270 PRK13984 putative oxidoreducta 46.8 23 0.00049 34.9 3.8 30 230-260 280-309 (604)
271 KOG1210 Predicted 3-ketosphing 46.4 27 0.00058 31.8 3.8 34 228-261 28-61 (331)
272 PF00208 ELFV_dehydrog: Glutam 46.3 22 0.00047 31.0 3.2 43 217-261 17-59 (244)
273 PRK09310 aroDE bifunctional 3- 46.3 34 0.00074 32.9 4.9 28 232-260 331-358 (477)
274 PRK14168 bifunctional 5,10-met 46.2 38 0.00083 30.5 4.8 49 213-261 140-193 (297)
275 TIGR01327 PGDH D-3-phosphoglyc 46.0 22 0.00048 34.6 3.5 29 232-261 137-165 (525)
276 PLN02616 tetrahydrofolate dehy 45.4 41 0.00088 31.2 4.9 49 213-261 210-259 (364)
277 PRK08605 D-lactate dehydrogena 45.2 22 0.00048 32.4 3.2 29 232-261 145-174 (332)
278 PRK14167 bifunctional 5,10-met 44.8 45 0.00097 30.1 5.0 49 213-261 136-189 (297)
279 PRK14184 bifunctional 5,10-met 43.6 40 0.00087 30.2 4.5 49 213-261 136-189 (286)
280 TIGR00521 coaBC_dfp phosphopan 43.0 25 0.00054 32.9 3.3 31 231-261 183-229 (390)
281 TIGR01317 GOGAT_sm_gam glutama 42.8 29 0.00062 33.4 3.7 29 231-260 141-169 (485)
282 PLN02897 tetrahydrofolate dehy 42.5 46 0.001 30.7 4.8 49 213-261 193-242 (345)
283 PF05706 CDKN3: Cyclin-depende 42.3 32 0.00069 28.3 3.4 32 228-259 128-161 (168)
284 PRK12831 putative oxidoreducta 41.6 30 0.00065 33.0 3.7 31 230-261 278-308 (464)
285 COG0503 Apt Adenine/guanine ph 41.5 39 0.00085 27.9 3.9 33 229-261 112-147 (179)
286 PF13450 NAD_binding_8: NAD(P) 41.2 31 0.00067 23.5 2.8 22 238-260 1-22 (68)
287 PLN02260 probable rhamnose bio 41.2 31 0.00068 34.3 3.9 29 232-260 379-407 (668)
288 TIGR01316 gltA glutamate synth 40.9 33 0.00071 32.5 3.8 30 231-261 131-160 (449)
289 KOG1252 Cystathionine beta-syn 40.4 46 0.00099 30.6 4.4 35 227-261 97-131 (362)
290 TIGR01316 gltA glutamate synth 40.3 32 0.0007 32.5 3.7 31 230-261 269-299 (449)
291 PRK13940 glutamyl-tRNA reducta 40.0 72 0.0016 30.1 5.9 31 228-259 176-206 (414)
292 PRK06481 fumarate reductase fl 39.9 29 0.00063 33.4 3.3 26 235-261 63-88 (506)
293 PRK14982 acyl-ACP reductase; P 39.7 39 0.00084 31.1 3.9 25 231-255 153-177 (340)
294 PLN02927 antheraxanthin epoxid 39.5 32 0.00069 34.7 3.5 30 230-260 78-107 (668)
295 PRK14185 bifunctional 5,10-met 39.1 62 0.0013 29.1 5.0 49 213-261 136-189 (293)
296 PRK13942 protein-L-isoaspartat 38.8 42 0.0009 28.3 3.8 35 225-261 69-105 (212)
297 COG0031 CysK Cysteine synthase 38.1 59 0.0013 29.4 4.7 34 226-260 55-88 (300)
298 PTZ00188 adrenodoxin reductase 38.0 39 0.00085 32.8 3.8 29 231-260 37-66 (506)
299 PRK15317 alkyl hydroperoxide r 37.5 31 0.00068 33.3 3.1 27 234-261 212-238 (517)
300 PLN00016 RNA-binding protein; 37.4 24 0.00053 32.3 2.3 30 232-261 51-84 (378)
301 PRK12779 putative bifunctional 36.6 35 0.00076 35.8 3.5 30 231-261 304-333 (944)
302 COG0190 FolD 5,10-methylene-te 35.6 73 0.0016 28.5 4.8 49 213-261 135-184 (283)
303 PLN00093 geranylgeranyl diphos 35.2 36 0.00078 32.4 3.1 26 235-261 41-66 (450)
304 PRK09754 phenylpropionate diox 35.0 40 0.00087 31.2 3.3 31 230-261 141-171 (396)
305 PLN02556 cysteine synthase/L-3 34.3 60 0.0013 30.1 4.3 35 226-260 103-137 (368)
306 PRK05690 molybdopterin biosynt 34.2 54 0.0012 28.5 3.8 25 233-258 32-56 (245)
307 PRK11749 dihydropyrimidine deh 33.7 45 0.00096 31.6 3.5 29 231-260 138-166 (457)
308 PRK09853 putative selenate red 33.5 43 0.00092 35.5 3.5 30 231-261 537-566 (1019)
309 PRK14174 bifunctional 5,10-met 33.4 87 0.0019 28.2 5.0 49 213-261 138-191 (295)
310 PRK06567 putative bifunctional 33.1 47 0.001 35.0 3.7 29 231-260 381-409 (1028)
311 PRK12778 putative bifunctional 33.0 47 0.001 33.7 3.7 29 231-260 429-457 (752)
312 PRK14967 putative methyltransf 32.6 64 0.0014 27.2 4.0 33 225-260 29-62 (223)
313 KOG1641 Mitochondrial chaperon 32.4 53 0.0012 24.7 2.9 26 147-172 41-75 (104)
314 PRK06153 hypothetical protein; 31.8 40 0.00088 31.6 2.7 26 232-258 175-200 (393)
315 KOG0069 Glyoxylate/hydroxypyru 31.7 48 0.001 30.4 3.2 27 231-258 160-186 (336)
316 PRK07573 sdhA succinate dehydr 31.1 47 0.001 33.2 3.3 24 236-260 38-61 (640)
317 COG2264 PrmA Ribosomal protein 31.0 1E+02 0.0022 27.8 5.1 75 164-258 109-185 (300)
318 PF08704 GCD14: tRNA methyltra 30.9 53 0.0011 28.8 3.2 36 225-262 33-70 (247)
319 PLN02565 cysteine synthase 30.6 1E+02 0.0023 27.8 5.2 34 228-261 61-94 (322)
320 PRK08762 molybdopterin biosynt 30.0 55 0.0012 30.3 3.4 27 232-259 134-160 (376)
321 TIGR03315 Se_ygfK putative sel 29.7 54 0.0012 34.7 3.5 29 232-261 536-564 (1012)
322 TIGR03140 AhpF alkyl hydropero 29.7 49 0.0011 31.9 3.1 28 233-261 212-239 (515)
323 PLN03013 cysteine synthase 29.3 1.1E+02 0.0024 29.1 5.2 36 226-261 167-202 (429)
324 PRK05600 thiamine biosynthesis 29.2 64 0.0014 29.9 3.6 26 232-258 40-65 (370)
325 PRK12775 putative trifunctiona 28.9 61 0.0013 34.3 3.8 29 232-261 429-457 (1006)
326 PRK13944 protein-L-isoaspartat 28.8 76 0.0016 26.5 3.7 35 225-261 65-101 (205)
327 PF10844 DUF2577: Protein of u 28.2 64 0.0014 23.9 2.8 23 163-195 76-98 (100)
328 PRK00676 hemA glutamyl-tRNA re 28.2 1.4E+02 0.0031 27.4 5.6 33 226-259 167-199 (338)
329 PRK09219 xanthine phosphoribos 28.1 85 0.0018 26.2 3.8 31 230-260 114-147 (189)
330 PLN00011 cysteine synthase 27.9 1.2E+02 0.0026 27.3 5.1 38 224-261 59-96 (323)
331 PRK08294 phenol 2-monooxygenas 27.5 54 0.0012 32.7 3.0 26 234-260 33-59 (634)
332 PRK11761 cysM cysteine synthas 27.4 1.5E+02 0.0032 26.5 5.5 35 226-261 56-90 (296)
333 TIGR01138 cysM cysteine syntha 27.1 1.5E+02 0.0032 26.3 5.5 35 226-261 52-86 (290)
334 COG1086 Predicted nucleoside-d 27.1 74 0.0016 31.4 3.7 25 231-255 248-273 (588)
335 PRK13943 protein-L-isoaspartat 27.0 84 0.0018 28.6 3.9 32 225-258 73-104 (322)
336 KOG1712 Adenine phosphoribosyl 26.8 66 0.0014 26.4 2.8 36 226-261 115-153 (183)
337 TIGR02469 CbiT precorrin-6Y C5 26.8 85 0.0018 23.0 3.4 33 226-260 13-46 (124)
338 PRK12779 putative bifunctional 26.5 67 0.0015 33.8 3.6 29 232-261 446-474 (944)
339 TIGR01381 E1_like_apg7 E1-like 26.2 73 0.0016 32.0 3.5 27 232-259 337-363 (664)
340 COG4821 Uncharacterized protei 26.2 84 0.0018 26.9 3.4 36 225-260 97-134 (243)
341 PRK10717 cysteine synthase A; 26.2 1.6E+02 0.0034 26.6 5.6 35 225-260 56-90 (330)
342 TIGR01744 XPRTase xanthine pho 26.0 1E+02 0.0022 25.8 3.9 31 230-260 114-147 (191)
343 PF14031 D-ser_dehydrat: Putat 25.7 66 0.0014 23.6 2.5 38 152-194 56-93 (94)
344 PRK12778 putative bifunctional 25.7 75 0.0016 32.3 3.7 30 230-260 567-597 (752)
345 PRK11199 tyrA bifunctional cho 25.6 69 0.0015 29.7 3.2 29 232-260 97-125 (374)
346 PLN00128 Succinate dehydrogena 25.4 69 0.0015 32.0 3.3 25 236-261 53-77 (635)
347 PLN02503 fatty acyl-CoA reduct 25.3 82 0.0018 31.4 3.8 29 228-256 114-142 (605)
348 PRK12810 gltD glutamate syntha 24.8 83 0.0018 30.0 3.6 28 230-258 278-305 (471)
349 TIGR03595 Obg_CgtA_exten Obg f 24.7 86 0.0019 21.6 2.8 19 222-240 46-64 (69)
350 PF13738 Pyr_redox_3: Pyridine 24.6 66 0.0014 26.1 2.6 29 231-260 165-193 (203)
351 PLN00203 glutamyl-tRNA reducta 24.4 93 0.002 30.4 3.9 27 232-259 265-291 (519)
352 PRK11749 dihydropyrimidine deh 24.2 93 0.002 29.4 3.9 30 230-260 270-300 (457)
353 PRK13748 putative mercuric red 24.2 74 0.0016 30.8 3.2 25 235-260 100-124 (561)
354 PRK12770 putative glutamate sy 24.1 92 0.002 28.2 3.7 27 232-259 171-197 (352)
355 PRK07878 molybdopterin biosynt 23.8 87 0.0019 29.2 3.5 27 232-259 41-67 (392)
356 TIGR02717 AcCoA-syn-alpha acet 23.6 1.7E+02 0.0037 27.8 5.5 32 229-260 291-322 (447)
357 PLN02697 lycopene epsilon cycl 23.4 80 0.0017 30.8 3.3 25 235-260 110-134 (529)
358 PRK07411 hypothetical protein; 23.0 92 0.002 29.1 3.5 26 233-259 38-63 (390)
359 PRK09564 coenzyme A disulfide 22.8 2.2E+02 0.0048 26.5 6.1 29 232-261 148-176 (444)
360 cd00291 SirA_YedF_YeeD SirA, Y 22.6 2.4E+02 0.0051 18.6 4.8 45 214-260 9-53 (69)
361 PF08541 ACP_syn_III_C: 3-Oxoa 22.6 95 0.0021 21.9 2.8 20 222-241 58-77 (90)
362 PTZ00058 glutathione reductase 22.0 88 0.0019 30.8 3.3 24 236-260 51-74 (561)
363 TIGR01139 cysK cysteine syntha 21.8 2.1E+02 0.0045 25.3 5.4 35 226-261 50-84 (298)
364 TIGR01137 cysta_beta cystathio 21.7 1.9E+02 0.0042 27.1 5.5 35 226-261 55-89 (454)
365 COG0499 SAM1 S-adenosylhomocys 21.7 70 0.0015 29.9 2.3 30 230-260 206-235 (420)
366 PRK07251 pyridine nucleotide-d 21.5 1E+02 0.0022 28.8 3.5 29 232-261 156-184 (438)
367 PLN02985 squalene monooxygenas 20.8 1.3E+02 0.0027 29.3 4.0 27 233-260 43-69 (514)
368 PRK05976 dihydrolipoamide dehy 20.7 1.1E+02 0.0023 29.1 3.5 28 233-261 180-207 (472)
369 KOG2017 Molybdopterin synthase 20.7 59 0.0013 30.2 1.6 27 232-259 65-91 (427)
370 COG0446 HcaD Uncharacterized N 20.7 1.1E+02 0.0025 27.5 3.6 27 233-260 136-162 (415)
371 PLN02968 Probable N-acetyl-gam 20.6 1E+02 0.0022 28.8 3.2 25 232-256 37-61 (381)
372 PLN02546 glutathione reductase 20.4 99 0.0021 30.4 3.2 25 236-261 82-106 (558)
373 PF00291 PALP: Pyridoxal-phosp 20.3 1.1E+02 0.0024 26.8 3.3 39 221-260 44-82 (306)
374 PTZ00306 NADH-dependent fumara 20.3 89 0.0019 33.7 3.1 25 236-261 412-436 (1167)
375 TIGR03385 CoA_CoA_reduc CoA-di 20.1 2.6E+02 0.0057 25.9 6.0 29 231-260 135-163 (427)
376 PF09269 DUF1967: Domain of un 20.0 92 0.002 21.4 2.1 18 222-239 46-63 (69)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=278.06 Aligned_cols=175 Identities=31% Similarity=0.444 Sum_probs=159.8
Q ss_pred ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
+.+|||+++.+++++ ++++ +++.|+|+++||+|+|+|+|||++|+|.++|.++. ..+|.++|||++|+|+++|++
T Consensus 1 ~~~mkA~~~~~~~~p--l~i~-e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~--~~~P~ipGHEivG~V~~vG~~ 75 (339)
T COG1064 1 MMTMKAAVLKKFGQP--LEIE-EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV--PKLPLIPGHEIVGTVVEVGEG 75 (339)
T ss_pred CcceEEEEEccCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC--CCCCccCCcceEEEEEEecCC
Confidence 457999999999998 7777 99999999999999999999999999999999887 448999999999999999999
Q ss_pred CCCCCCCCEEEE-ecCc------------------cccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775 161 VKEFKEGDEVYG-DINE------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221 (262)
Q Consensus 161 v~~~~~Gd~V~~-~~~~------------------~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA 221 (262)
|+.|++||+|.. +... ....++..+|+|+||++++++.++++|+++++++||.++|+..|.
T Consensus 76 V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~ 155 (339)
T COG1064 76 VTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITT 155 (339)
T ss_pred CccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeE
Confidence 999999999987 3221 123444568999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++.+++||++|+|.| .|++|.+++|+||++|++|+
T Consensus 156 y~alk~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Vi 194 (339)
T COG1064 156 YRALKKANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVI 194 (339)
T ss_pred eeehhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999 88999999999999999885
No 2
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=9.2e-34 Score=256.95 Aligned_cols=168 Identities=42% Similarity=0.579 Sum_probs=154.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++.+.+.++.++++ +.+.|.|.+|||||||++++||+.|...++|..+ ...++|+++|.|++|+|+++|++|+.
T Consensus 1 mka~~~~~~g~~~~l~~~-e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~-~~~~~P~i~G~d~aG~V~avG~~V~~ 78 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVV-EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP-PVRPLPFIPGSEAAGVVVAVGSGVTG 78 (326)
T ss_pred CeEEEEeccCCCceeEEE-ecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC-CCCCCCCcccceeEEEEEEeCCCCCC
Confidence 799999999999779898 9999999999999999999999999999998722 22568999999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
|++||+|+.... .+ ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.. .++++|++|||+||+
T Consensus 79 ~~~GdrV~~~~~-~~-----~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaa 152 (326)
T COG0604 79 FKVGDRVAALGG-VG-----RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAA 152 (326)
T ss_pred cCCCCEEEEccC-CC-----CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCC
Confidence 999999999740 00 37999999999999999999999999999999999999999975 889999999999999
Q ss_pred hHHHHHHHHHHHHcCCc
Q 024775 243 GGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~ 259 (262)
|+||++++||||++|++
T Consensus 153 GgVG~~aiQlAk~~G~~ 169 (326)
T COG0604 153 GGVGSAAIQLAKALGAT 169 (326)
T ss_pred chHHHHHHHHHHHcCCc
Confidence 99999999999999964
No 3
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-33 Score=243.58 Aligned_cols=180 Identities=31% Similarity=0.407 Sum_probs=159.6
Q ss_pred CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775 78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV 157 (262)
Q Consensus 78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v 157 (262)
+..|.+.++|.+..++....+++. +++.|+++++||+|+|+|+|||++|++.+.|..+. .++|.++|||++|+|++|
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~-~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~--s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVF-SFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL--SKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred ccCchhhEEEEEECCCCCCCccee-EcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc--ccCCccCCceeeEEEEEE
Confidence 357999999999999886556667 88999999999999999999999999999999876 789999999999999999
Q ss_pred CCCCCCCCCCCEEEE-ecCc-------------------------cccCCCCCCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775 158 GTQVKEFKEGDEVYG-DINE-------------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA 211 (262)
Q Consensus 158 G~~v~~~~~Gd~V~~-~~~~-------------------------~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~a 211 (262)
|++|++|++||+|-+ +... ...++.-.+|+|++|+++++..++++|++++.+.|
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~a 160 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASA 160 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhc
Confidence 999999999999832 1111 11233335677999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 212 AGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 212 a~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|-++|+..|.|..|++.++.||++|.|.| +|++|.+++|+||++|.+|+
T Consensus 161 APlLCaGITvYspLk~~g~~pG~~vgI~G-lGGLGh~aVq~AKAMG~rV~ 209 (360)
T KOG0023|consen 161 APLLCAGITVYSPLKRSGLGPGKWVGIVG-LGGLGHMAVQYAKAMGMRVT 209 (360)
T ss_pred cchhhcceEEeehhHHcCCCCCcEEEEec-CcccchHHHHHHHHhCcEEE
Confidence 99999999999999999999999999999 66699999999999999985
No 4
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=8.4e-31 Score=230.29 Aligned_cols=172 Identities=24% Similarity=0.312 Sum_probs=148.6
Q ss_pred cceeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCC
Q 024775 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGT 159 (262)
Q Consensus 82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~ 159 (262)
..|+|+++.+.++ ++++ +.+.|++ .|+||+|++.++|||++|+|.+...... ...+.|.++|||.+|+|+++|+
T Consensus 3 ~~~~A~vl~g~~d---i~i~-~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~ 78 (354)
T KOG0024|consen 3 ADNLALVLRGKGD---IRIE-QRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGD 78 (354)
T ss_pred cccceeEEEccCc---eeEe-eCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcc
Confidence 4689999999988 7777 8899988 8999999999999999999999764332 2356799999999999999999
Q ss_pred CCCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHH
Q 024775 160 QVKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220 (262)
Q Consensus 160 ~v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~t 220 (262)
+|+.+|+||||+.-..-.| +.-+..+|++++|++.+++.++||||+++++++|++ ..+..
T Consensus 79 ~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~-ePLsV 157 (354)
T KOG0024|consen 79 EVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALI-EPLSV 157 (354)
T ss_pred cccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccc-cchhh
Confidence 9999999999986432111 222235699999999999999999999999999887 22567
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+|||.++++++.|++|||+| +|++|+++...||++||.
T Consensus 158 ~~HAcr~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~ 195 (354)
T KOG0024|consen 158 GVHACRRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGAS 195 (354)
T ss_pred hhhhhhhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 99999999999999999999 999999999999999984
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=1e-29 Score=216.49 Aligned_cols=170 Identities=35% Similarity=0.442 Sum_probs=160.1
Q ss_pred CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775 79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG 158 (262)
Q Consensus 79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG 158 (262)
..|...|-+++++.|..++++++ +.+.|+|.++|++||..|+|+|..|...++|.+. +.+.|+++|-|++|+|++||
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~e-d~pv~~papgel~iknka~GlNfid~y~RkGlY~--~~plPytpGmEaaGvVvAvG 80 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLE-DRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD--PAPLPYTPGMEAAGVVVAVG 80 (336)
T ss_pred CCCchheEEEEeccCCcceEEEe-eecCCCCCCCceEEeehhcCccHHHHHHhccccC--CCCCCcCCCcccceEEEEec
Confidence 45777999999999999999999 9999999999999999999999999999999874 37789999999999999999
Q ss_pred CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEE
Q 024775 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSIL 237 (262)
Q Consensus 159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~Vl 237 (262)
++|+++++||+|..+.+ .|.|+|+..+|...++++|+.+++++++++.+..+|||..+++ ..+++|++||
T Consensus 81 ~gvtdrkvGDrVayl~~---------~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVl 151 (336)
T KOG1197|consen 81 EGVTDRKVGDRVAYLNP---------FGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVL 151 (336)
T ss_pred CCccccccccEEEEecc---------chhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99999999999988653 8999999999999999999999999999999999999999976 6899999999
Q ss_pred EEcCchHHHHHHHHHHHHcCCcc
Q 024775 238 VLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 238 I~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
|+.|+|++|++++|+++..|+++
T Consensus 152 vhaAAGGVGlll~Ql~ra~~a~t 174 (336)
T KOG1197|consen 152 VHAAAGGVGLLLCQLLRAVGAHT 174 (336)
T ss_pred EEeccccHHHHHHHHHHhcCcEE
Confidence 99999999999999999999975
No 6
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.97 E-value=4.6e-29 Score=226.17 Aligned_cols=172 Identities=30% Similarity=0.361 Sum_probs=148.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++.+++. ++++ +.+.|.++++||+||+.+++||++|++.+.+.... +..+|.++|||++|+|+++|++|+.
T Consensus 1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~ 75 (339)
T cd08239 1 MRGAVFPGDRT---VELR-EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA-PAYQGVIPGHEPAGVVVAVGPGVTH 75 (339)
T ss_pred CeEEEEecCCc---eEEE-ecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc-cCCCCceeccCceEEEEEECCCCcc
Confidence 79999987654 7777 89999999999999999999999999988775432 1235789999999999999999999
Q ss_pred CCCCCEEEEecCcccc-------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDINEKAL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~-------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
|++||+|+......|. .+....|+|+||++++...++++|+++++++++.+++++.|||++
T Consensus 76 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~ 155 (339)
T cd08239 76 FRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHA 155 (339)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence 9999999886432110 122346999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
++++++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus 156 l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi 192 (339)
T cd08239 156 LRRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVI 192 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 9888999999999998 699999999999999998 64
No 7
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.97 E-value=1.1e-29 Score=224.94 Aligned_cols=170 Identities=25% Similarity=0.282 Sum_probs=151.7
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
++|+++..++++| |+++ ++++++|++|||+||+.++|+|++|.+.+.|..| ..+|.++|||++|+|++||++|+
T Consensus 2 k~~aAV~~~~~~P--l~i~-ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p---~~~P~vLGHEgAGiVe~VG~gVt 75 (366)
T COG1062 2 KTRAAVAREAGKP--LEIE-EVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP---EGFPAVLGHEGAGIVEAVGEGVT 75 (366)
T ss_pred CceEeeeecCCCC--eEEE-EEecCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCceecccccccEEEEecCCcc
Confidence 5799999999988 7777 9999999999999999999999999999999877 44999999999999999999999
Q ss_pred CCCCCCEEEEecCccc--------------------------------c-------CCCCCCCceeeEEEecCCCeEECC
Q 024775 163 EFKEGDEVYGDINEKA--------------------------------L-------EGPKQFGSLAEYTAVEERLLAPKP 203 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~--------------------------------~-------~~~~~~G~~ae~~~v~~~~~~~lP 203 (262)
++++||+|+..+...| + ..+-..++|+||.++++..++|++
T Consensus 76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~ 155 (366)
T COG1062 76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID 155 (366)
T ss_pred ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence 9999999987654111 0 011123589999999999999999
Q ss_pred CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++.+++.++++.+...|++.++. .+++++|++|.|+| .|++|+++||-|+..||.
T Consensus 156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~ 211 (366)
T COG1062 156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAG 211 (366)
T ss_pred CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCc
Confidence 99999999999999999999875 58999999999999 999999999999999985
No 8
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=2.7e-29 Score=217.30 Aligned_cols=173 Identities=32% Similarity=0.436 Sum_probs=161.3
Q ss_pred CCcccceeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775 78 GTVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156 (262)
Q Consensus 78 ~~~p~~~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~ 156 (262)
+.+|...|+++|.++|++ +++++. +.++|+....+|+||..++.|||+|+..++|.+|.. .++|.+-|+|++|+|+.
T Consensus 14 ~q~~~~~kalvY~~hgdP~kVlql~-~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvr-P~~PAVgGnEGv~eVv~ 91 (354)
T KOG0025|consen 14 SQMPARSKALVYSEHGDPAKVLQLK-NLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVR-PELPAVGGNEGVGEVVA 91 (354)
T ss_pred cccccccceeeecccCCchhhheee-cccCCCCCCCceeeeeeecCCChHHhhhhccccCCC-CCCCcccCCcceEEEEE
Confidence 457888999999999998 788888 999999988889999999999999999999999875 67789999999999999
Q ss_pred eCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCE
Q 024775 157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKS 235 (262)
Q Consensus 157 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~ 235 (262)
||+++++|++||+|+.... ..|+|++|.+.+++.++++++.++++.||.+..+-+|||..|+. .++++||+
T Consensus 92 vGs~vkgfk~Gd~VIp~~a--------~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~ 163 (354)
T KOG0025|consen 92 VGSNVKGFKPGDWVIPLSA--------NLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDS 163 (354)
T ss_pred ecCCcCccCCCCeEeecCC--------CCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCe
Confidence 9999999999999998764 47999999999999999999999999999999999999999975 79999999
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
|+-.||.++||++++|+||++|.+-
T Consensus 164 vIQNganS~VG~~ViQlaka~Gikt 188 (354)
T KOG0025|consen 164 VIQNGANSGVGQAVIQLAKALGIKT 188 (354)
T ss_pred eeecCcccHHHHHHHHHHHHhCcce
Confidence 9999999999999999999999863
No 9
>PLN02740 Alcohol dehydrogenase-like
Probab=99.96 E-value=7.1e-29 Score=229.28 Aligned_cols=177 Identities=21% Similarity=0.250 Sum_probs=149.9
Q ss_pred cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775 80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT 159 (262)
Q Consensus 80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~ 159 (262)
-|.+||++++.++++. +.++ +.+.|.++++||+|||.++|||++|++.+.|..+. ...+|.++|||++|+|+++|+
T Consensus 7 ~~~~mka~~~~~~~~~--~~~~-e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~~p~i~GhE~~G~V~~vG~ 82 (381)
T PLN02740 7 KVITCKAAVAWGPGEP--LVME-EIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA-QRAYPRILGHEAAGIVESVGE 82 (381)
T ss_pred cceeeEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc-cCCCCccccccceEEEEEeCC
Confidence 3557999999988754 5566 88999999999999999999999999999887532 235789999999999999999
Q ss_pred CCCCCCCCCEEEEecCccc------cC---------------------C---------------CCCCCceeeEEEecCC
Q 024775 160 QVKEFKEGDEVYGDINEKA------LE---------------------G---------------PKQFGSLAEYTAVEER 197 (262)
Q Consensus 160 ~v~~~~~Gd~V~~~~~~~~------~~---------------------~---------------~~~~G~~ae~~~v~~~ 197 (262)
+++.|++||+|++.....| .. + ....|+|+||++++.+
T Consensus 83 ~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~ 162 (381)
T PLN02740 83 GVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSA 162 (381)
T ss_pred CCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehH
Confidence 9999999999987542211 00 0 0025899999999999
Q ss_pred CeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 198 ~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
.++++|+++++++++.+++.+.|||+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus 163 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi 227 (381)
T PLN02740 163 CVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKII 227 (381)
T ss_pred HeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEE
Confidence 99999999999999999999999999874 58899999999998 79999999999999999 454
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.96 E-value=9.6e-29 Score=227.48 Aligned_cols=173 Identities=28% Similarity=0.338 Sum_probs=148.3
Q ss_pred eeEEEEcccCC------cceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775 84 MKAWLYGEYGG------VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV 157 (262)
Q Consensus 84 ~ka~v~~~~g~------~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v 157 (262)
|||+++.++|. ++.++++ +.+.|+++++||+|||.+++||++|++.+.|..+ ..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~-~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~GhE~~G~V~~v 76 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIE-EVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP---RPLPMALGHEAAGVVVEV 76 (371)
T ss_pred CcceEEEecccccccccCCCceEE-EeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC---CCCCccCCccceeEEEEe
Confidence 89999999875 3668888 8999999999999999999999999999988653 346899999999999999
Q ss_pred CCCCCCCCCCCEEEEecCccc------cC---------------C------------------CCCCCceeeEEEecCCC
Q 024775 158 GTQVKEFKEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERL 198 (262)
Q Consensus 158 G~~v~~~~~Gd~V~~~~~~~~------~~---------------~------------------~~~~G~~ae~~~v~~~~ 198 (262)
|++++.+++||+|++.....| .. + ....|+|+||+++++..
T Consensus 77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~ 156 (371)
T cd08281 77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS 156 (371)
T ss_pred CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence 999999999999987421111 00 0 00137999999999999
Q ss_pred eEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 199 LAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 199 ~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
++++|+++++++++.+.+.+.|||+++. +.++++|++|+|+| +|++|++++|+||.+|+ +|+
T Consensus 157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi 220 (371)
T cd08281 157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVV 220 (371)
T ss_pred eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence 9999999999999999999999999974 58899999999998 79999999999999999 453
No 11
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.96 E-value=1.8e-28 Score=222.51 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=147.1
Q ss_pred EEEEcccCCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 86 AWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 86 a~v~~~~g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||.+.++|.+ ..++++ +.+.|+++++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus 1 ~~~~~~~g~~~~~~l~~~-~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~ 77 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFV-ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV--HRPRVTPGHEVVGEVAGRGADAGG 77 (329)
T ss_pred CeeeecCCcCCCCCceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC--CCCCccCCcceEEEEEEECCCCcc
Confidence 4677777765 458888 89999999999999999999999999999887543 234689999999999999999999
Q ss_pred CCCCCEEEEecC-----c--cc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDIN-----E--KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~-----~--~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
|++||+|+..+. . .| ..+....|+|+||+.+++..++++|+++++++++.+++.+.|||++
T Consensus 78 ~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~ 157 (329)
T TIGR02822 78 FAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRA 157 (329)
T ss_pred cCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHH
Confidence 999999975321 0 00 1122346999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.++++++|++|||+| +|++|++++|+||.+|++|+
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi 193 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVH 193 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence 9888999999999999 59999999999999999864
No 12
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.96 E-value=1.9e-28 Score=225.48 Aligned_cols=172 Identities=25% Similarity=0.296 Sum_probs=147.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++...+.. ++++ +++.|++.++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++|++++.
T Consensus 2 ~~a~~~~~~~~~--l~~~-~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~~v~~ 76 (368)
T TIGR02818 2 SRAAVAWAAGQP--LKIE-EVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE--GVFPVILGHEGAGIVEAVGEGVTS 76 (368)
T ss_pred ceEEEEecCCCC--eEEE-EecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC--CCCCeeeccccEEEEEEECCCCcc
Confidence 899998887754 6676 88999999999999999999999999999887543 356899999999999999999999
Q ss_pred CCCCCEEEEecCccc------cC---------------C------------------CCCCCceeeEEEecCCCeEECCC
Q 024775 164 FKEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERLLAPKPK 204 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------~~---------------~------------------~~~~G~~ae~~~v~~~~~~~lP~ 204 (262)
|++||+|++.....| .. + ....|+|+||+++++..++++|+
T Consensus 77 ~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~ 156 (368)
T TIGR02818 77 VKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINP 156 (368)
T ss_pred CCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCC
Confidence 999999987532111 00 0 00137999999999999999999
Q ss_pred CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
++++++++.+++++.|||+++. +.++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus 157 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi 214 (368)
T TIGR02818 157 AAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRII 214 (368)
T ss_pred CCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999984 58899999999998 69999999999999999 564
No 13
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=4.5e-29 Score=218.23 Aligned_cols=173 Identities=24% Similarity=0.254 Sum_probs=153.9
Q ss_pred ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
+-+|||++.++++++ |.++ ++.+++|+.+||+||+.++++|++|.+.+.|..+. ..||.++|||++|+|+.+|++
T Consensus 5 vI~CKAAV~w~a~~P--L~IE-ei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~--~~fP~IlGHEaaGIVESvGeg 79 (375)
T KOG0022|consen 5 VITCKAAVAWEAGKP--LVIE-EIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE--GLFPVILGHEAAGIVESVGEG 79 (375)
T ss_pred ceEEeEeeeccCCCC--eeEE-EEEeCCCCCceEEEEEEEEeeccccceeecCCCcc--ccCceEecccceeEEEEecCC
Confidence 567999999999998 6666 99999999999999999999999999999998754 678999999999999999999
Q ss_pred CCCCCCCCEEEEecCccc----------------------------------------cCCCCCCCceeeEEEecCCCeE
Q 024775 161 VKEFKEGDEVYGDINEKA----------------------------------------LEGPKQFGSLAEYTAVEERLLA 200 (262)
Q Consensus 161 v~~~~~Gd~V~~~~~~~~----------------------------------------~~~~~~~G~~ae~~~v~~~~~~ 200 (262)
|+.+++||+|+.++...| ++++....+|+||.++++..++
T Consensus 80 V~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~ 159 (375)
T KOG0022|consen 80 VTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVA 159 (375)
T ss_pred ccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeE
Confidence 999999999987642110 1222233589999999999999
Q ss_pred ECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 201 PKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 201 ~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++++..+++.++++.+.+.|+|.|.- .+++++|++|.|+| .|+||++++|-||++||.
T Consensus 160 kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAs 218 (375)
T KOG0022|consen 160 KIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGAS 218 (375)
T ss_pred ecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcc
Confidence 99999999999999999999999984 68999999999999 999999999999999984
No 14
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.96 E-value=3.7e-28 Score=225.70 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=140.9
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCC-------CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEE
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVK-------EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV 155 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~-------~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv 155 (262)
-|||+++.++++ ++++ +++.|+++ +|||||||.++|||++|++.+.|..+ ..+|.++|||++|+|+
T Consensus 2 ~mka~v~~~~~~---~~~~-e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~---~~~p~i~GhE~~G~V~ 74 (393)
T TIGR02819 2 GNRGVVYLGPGK---VEVQ-DIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT---APTGLVLGHEITGEVI 74 (393)
T ss_pred CceEEEEecCCc---eeEE-eccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC---CCCCccccceeEEEEE
Confidence 489999988876 6666 88988874 68999999999999999999988643 3468999999999999
Q ss_pred EeCCCCCCCCCCCEEEEecCccc-------------cC-----------CC----CCCCceeeEEEecCC--CeEECCCC
Q 024775 156 KVGTQVKEFKEGDEVYGDINEKA-------------LE-----------GP----KQFGSLAEYTAVEER--LLAPKPKN 205 (262)
Q Consensus 156 ~vG~~v~~~~~Gd~V~~~~~~~~-------------~~-----------~~----~~~G~~ae~~~v~~~--~~~~lP~~ 205 (262)
++|++|++|++||+|+......| |. +. ...|+|+||+++++. .++++|++
T Consensus 75 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~ 154 (393)
T TIGR02819 75 EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDR 154 (393)
T ss_pred EEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCc
Confidence 99999999999999977432111 00 10 136999999999964 69999988
Q ss_pred CCH----hhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 206 LDF----VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 206 ~~~----~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
++. .+++.+...+.++|+++.+.++++|++|+|.| +|++|++++|+|+.+|+++
T Consensus 155 ~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~ 212 (393)
T TIGR02819 155 DQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAV 212 (393)
T ss_pred ccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCce
Confidence 643 34667788899999999888999999999976 8999999999999999974
No 15
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.96 E-value=4.2e-28 Score=222.08 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=147.0
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+||++++++++.+ ++++ +.+.|.++++||+|||.+++||++|++.+.|..+ ..+|.++|||++|+|+++|++++
T Consensus 1 ~mka~~~~~~~~~--~~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~ 74 (358)
T TIGR03451 1 TVRGVIARSKGAP--VELE-TIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN---DEFPFLLGHEAAGVVEAVGEGVT 74 (358)
T ss_pred CcEEEEEccCCCC--CEEE-EEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc---ccCCcccccceEEEEEEeCCCCc
Confidence 5999999999875 5666 8899999999999999999999999999988653 34688999999999999999999
Q ss_pred CCCCCCEEEEecCccc------cC--------------------CC-----CCCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775 163 EFKEGDEVYGDINEKA------LE--------------------GP-----KQFGSLAEYTAVEERLLAPKPKNLDFVQA 211 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~------~~--------------------~~-----~~~G~~ae~~~v~~~~~~~lP~~~~~~~a 211 (262)
+|++||+|++.....| .. +. ...|+|+||+.+++..++++|++++++++
T Consensus 75 ~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~a 154 (358)
T TIGR03451 75 DVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAA 154 (358)
T ss_pred ccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHh
Confidence 9999999987432110 00 00 12589999999999999999999999999
Q ss_pred hcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-c
Q 024775 212 AGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-F 260 (262)
Q Consensus 212 a~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V 260 (262)
+.+++.+.++|+++. ...+++|++|||+| +|++|++++|+||.+|++ |
T Consensus 155 a~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~V 204 (358)
T TIGR03451 155 GLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKI 204 (358)
T ss_pred hhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence 999988999998875 57899999999998 799999999999999985 5
No 16
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.96 E-value=4.5e-28 Score=222.49 Aligned_cols=176 Identities=24% Similarity=0.366 Sum_probs=145.1
Q ss_pred cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775 80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT 159 (262)
Q Consensus 80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~ 159 (262)
-|+++++|.+.+... .+++. +.+.|.++++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+
T Consensus 9 ~~~~~~~~~~~~~~~--~l~~~-~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~ 83 (360)
T PLN02586 9 HPQKAFGWAARDPSG--VLSPF-HFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF--TRYPIVPGHEIVGIVTKLGK 83 (360)
T ss_pred chhheeEEEecCCCC--CceEE-eecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC--CCCCccCCcceeEEEEEECC
Confidence 355666666655543 36666 78888999999999999999999999998876542 35689999999999999999
Q ss_pred CCCCCCCCCEEEEecC----ccc----------cC------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhc
Q 024775 160 QVKEFKEGDEVYGDIN----EKA----------LE------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAG 213 (262)
Q Consensus 160 ~v~~~~~Gd~V~~~~~----~~~----------~~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~ 213 (262)
+|++|++||+|+.... ..| +. +....|+|+||+++++..++++|+++++++++.
T Consensus 84 ~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~ 163 (360)
T PLN02586 84 NVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAP 163 (360)
T ss_pred CCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhh
Confidence 9999999999974211 000 00 122368999999999999999999999999999
Q ss_pred ccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 214 LPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 214 l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.+...|+|+++.+ ..+++|++|+|.| +|++|++++|+||.+|++|+
T Consensus 164 l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi 211 (360)
T PLN02586 164 LLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVT 211 (360)
T ss_pred hhcchHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 99999999999975 4578999999987 79999999999999999864
No 17
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.96 E-value=6e-28 Score=221.80 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=147.9
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+|||+++.+.+.. ++++ +.++|+++++||+|||.+++||++|++.++|..+. ..+|.++|||++|+|+++|++++
T Consensus 2 ~~ka~~~~~~~~~--~~l~-~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~ 76 (369)
T cd08301 2 TCKAAVAWEAGKP--LVIE-EVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT--PLFPRILGHEAAGIVESVGEGVT 76 (369)
T ss_pred ccEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC--CCCCcccccccceEEEEeCCCCC
Confidence 6999999887654 6676 88999999999999999999999999999886542 45689999999999999999999
Q ss_pred CCCCCCEEEEecCcccc------CC----------------------------------CCCCCceeeEEEecCCCeEEC
Q 024775 163 EFKEGDEVYGDINEKAL------EG----------------------------------PKQFGSLAEYTAVEERLLAPK 202 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~------~~----------------------------------~~~~G~~ae~~~v~~~~~~~l 202 (262)
+|++||+|++.....|. .+ ....|+|+||+++++..++++
T Consensus 77 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i 156 (369)
T cd08301 77 DLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKI 156 (369)
T ss_pred ccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEEC
Confidence 99999999975321110 00 002478999999999999999
Q ss_pred CCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 203 PKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 203 P~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
|+++++++++.+++.+.|+|+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus 157 P~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi 216 (369)
T cd08301 157 NPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRII 216 (369)
T ss_pred CCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 999999999999999999999875 58899999999998 69999999999999998 553
No 18
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.96 E-value=7.8e-28 Score=216.36 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=137.8
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecC-hhhHHhHcCCCCCCC-CCCCCCCCccEEEEEEEeCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN-PVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~-~sD~~~~~g~~~~~~-~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
+||++++.+++. ++++ +.+.|++++|||+|||.+++|| ++|++.++|..+..+ ..+|.++|||++|+|+++|++
T Consensus 1 ~~ka~~~~~~~~---l~~~-e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~ 76 (308)
T TIGR01202 1 KTQAIVLSGPNQ---IELR-EVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD 76 (308)
T ss_pred CceEEEEeCCCe---EEEE-EecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence 489999987654 7777 8999999999999999999996 799998888764322 357899999999999999999
Q ss_pred CCCCCCCCEEEEecCccccCC-CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEE
Q 024775 161 VKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239 (262)
Q Consensus 161 v~~~~~Gd~V~~~~~~~~~~~-~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~ 239 (262)
+ .|++||+|+..+. .|... ....|+|+||++++++.++++|++++++. +.+ ....|||+++++.. .+|++|+|+
T Consensus 77 v-~~~vGdrV~~~~~-~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~~~-~~~~~vlV~ 151 (308)
T TIGR01202 77 T-GFRPGDRVFVPGS-NCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAGAE-VKVLPDLIV 151 (308)
T ss_pred C-CCCCCCEEEEeCc-cccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHhcc-cCCCcEEEE
Confidence 8 6999999987432 22111 12369999999999999999999998764 444 34679999997653 368999999
Q ss_pred cCchHHHHHHHHHHHHcCCcc
Q 024775 240 NGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
| +|++|++++|+||.+|+++
T Consensus 152 G-~G~vG~~a~q~ak~~G~~~ 171 (308)
T TIGR01202 152 G-HGTLGRLLARLTKAAGGSP 171 (308)
T ss_pred C-CCHHHHHHHHHHHHcCCce
Confidence 8 8999999999999999974
No 19
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.96 E-value=1.4e-27 Score=219.54 Aligned_cols=173 Identities=25% Similarity=0.256 Sum_probs=147.0
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+||++++...+.. ++++ +.+.|.++++||+|||.+++||++|++.+.|..+. ..+|.++|||++|+|+++|++++
T Consensus 2 ~~~a~~~~~~~~~--~~~~-~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~vG~~v~ 76 (368)
T cd08300 2 TCKAAVAWEAGKP--LSIE-EVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE--GLFPVILGHEGAGIVESVGEGVT 76 (368)
T ss_pred cceEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc--CCCCceeccceeEEEEEeCCCCc
Confidence 5899998877654 6666 88999999999999999999999999999887653 35789999999999999999999
Q ss_pred CCCCCCEEEEecCccc------cC---------------------------------CCCCCCceeeEEEecCCCeEECC
Q 024775 163 EFKEGDEVYGDINEKA------LE---------------------------------GPKQFGSLAEYTAVEERLLAPKP 203 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~------~~---------------------------------~~~~~G~~ae~~~v~~~~~~~lP 203 (262)
+|++||+|++.....| .. +....|+|+||+++++..++++|
T Consensus 77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP 156 (368)
T cd08300 77 SVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKIN 156 (368)
T ss_pred cCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCC
Confidence 9999999987532110 00 00024689999999999999999
Q ss_pred CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
+++++++++.+.+++.|||+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus 157 ~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi 215 (368)
T cd08300 157 PEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRII 215 (368)
T ss_pred CCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999974 58899999999998 79999999999999999 453
No 20
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.95 E-value=2.4e-27 Score=212.58 Aligned_cols=167 Identities=26% Similarity=0.312 Sum_probs=150.7
Q ss_pred eeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||++++.+++++ +.++++ +.+.|.+.++||+|||.++++|+.|++.+.|.++.. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~-~~~p~~~G~e~~G~V~~~G~~v~ 78 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIG-EVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYK-PELPAIGGSEAVGVVDAVGEGVK 78 (324)
T ss_pred CeeEEEccCCChhHeEEEe-ecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCC-CCCCCCCCcceEEEEEEeCCCCC
Confidence 799999888765 457888 889999999999999999999999999988866432 34578999999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCc
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~ 242 (262)
++++||+|+++.. .|+|++|+.+++..++++|+++++++++.++..+.++|++++..++++|++|+|+|++
T Consensus 79 ~~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~ 149 (324)
T cd08292 79 GLQVGQRVAVAPV---------HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAG 149 (324)
T ss_pred CCCCCCEEEeccC---------CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccc
Confidence 9999999998642 5899999999999999999999999999998889999999988899999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|.+|++++|+|+.+|++++
T Consensus 150 g~ig~~~~~~a~~~G~~v~ 168 (324)
T cd08292 150 GAVGKLVAMLAAARGINVI 168 (324)
T ss_pred cHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999875
No 21
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.95 E-value=2.4e-27 Score=215.88 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=137.7
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc-CCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGTQV 161 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~-g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v 161 (262)
.||+.++..+++ ++++ +.+.| +.++||||||.++|||++|++.+. |..+....++|.++|||++|+|+++ ++
T Consensus 4 ~~~~~~~~~~~~---~~~~-~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v 76 (343)
T PRK09880 4 KTQSCVVAGKKD---VAVT-EQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DS 76 (343)
T ss_pred cceEEEEecCCc---eEEE-ecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cC
Confidence 478999988877 6666 77877 689999999999999999999875 4332222457899999999999999 78
Q ss_pred CCCCCCCEEEEecCcccc------------------CC-----CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchH
Q 024775 162 KEFKEGDEVYGDINEKAL------------------EG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI 218 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~~~~------------------~~-----~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~ 218 (262)
++|++||+|+......|. .+ ....|+|+||++++++.++++|+++++++++ +...+
T Consensus 77 ~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~ 155 (343)
T PRK09880 77 SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPL 155 (343)
T ss_pred ccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHH
Confidence 899999999875322110 01 1236999999999999999999999987655 45677
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+||+++++....+|++|+|+| +|++|++++|+||.+|++
T Consensus 156 ~~a~~al~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~ 195 (343)
T PRK09880 156 AVAIHAAHQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAA 195 (343)
T ss_pred HHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCc
Confidence 8999999888888999999998 699999999999999984
No 22
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.95 E-value=3.1e-27 Score=215.99 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=135.4
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCC-CCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~-~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+++++..+ .+ ++++ +.+.|+++++||||||++++||++|++.++|..+..+ ..+|.++|||++|+|+++|++ +
T Consensus 1 mka~~~~~~~-~~-l~~~-~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~ 76 (355)
T cd08230 1 MKAIAVKPGK-PG-VRVV-DIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S 76 (355)
T ss_pred CceeEecCCC-CC-CeEE-eCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence 7899997533 33 7777 8999999999999999999999999999998754322 245789999999999999999 9
Q ss_pred CCCCCCEEEEecCccc------cC--------------CC-CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775 163 EFKEGDEVYGDINEKA------LE--------------GP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~------~~--------------~~-~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA 221 (262)
.|++||+|+......| .. +. ...|+|+||++++++.++++|++++ +.+.+..++.++
T Consensus 77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~ 154 (355)
T cd08230 77 GLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVV 154 (355)
T ss_pred CCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--cceeecchHHHH
Confidence 9999999987543211 00 11 1358999999999999999999998 344444555555
Q ss_pred HHHHHH-------cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 222 YEGLER-------TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 222 ~~al~~-------~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.++.. ..+++|++|+|+| +|++|++++|+||.+|++|+
T Consensus 155 ~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi 200 (355)
T cd08230 155 EKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVY 200 (355)
T ss_pred HHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 555422 2367999999998 69999999999999999764
No 23
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.95 E-value=3.5e-27 Score=214.96 Aligned_cols=168 Identities=19% Similarity=0.182 Sum_probs=135.3
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC--CCCCCCCCCccEEEEEEEeCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--DSPLPTVPGYDVAGVVVKVGTQV 161 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~--~~~~p~~~G~e~vG~Vv~vG~~v 161 (262)
.|++++.++++ ++++ +.+.|+ ++|||+|||+++|||++|++.++|..... ...+|.++|||++|+|+++|.+
T Consensus 3 ~~~~~~~~~~~---~~~~-~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~- 76 (341)
T cd08237 3 NQVYRLVRPKF---FEVT-YEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG- 76 (341)
T ss_pred ccceEEeccce---EEEe-ecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC-
Confidence 57888887775 6776 888885 99999999999999999999999865321 1357899999999999998864
Q ss_pred CCCCCCCEEEEecCccc---------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH
Q 024775 162 KEFKEGDEVYGDINEKA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE 226 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~~~---------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~ 226 (262)
.|++||+|+......| +.+....|+|+||+++|++.++++|+++++++++ +...+.++|+++.
T Consensus 77 -~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~ 154 (341)
T cd08237 77 -TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAIS 154 (341)
T ss_pred -ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHH
Confidence 7999999987532211 0111235899999999999999999999998876 4457788999985
Q ss_pred H---cCCCCCCEEEEEcCchHHHHHHHHHHHH-cCC-cc
Q 024775 227 R---TGFSAGKSILVLNGSGGVGSLVIQVCYY-YLE-FF 260 (262)
Q Consensus 227 ~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga-~V 260 (262)
+ +.+++|++|+|.| +|++|++++|+|+. +|+ +|
T Consensus 155 ~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~v 192 (341)
T cd08237 155 RFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKL 192 (341)
T ss_pred HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcE
Confidence 3 4578999999999 79999999999986 553 44
No 24
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.95 E-value=6.8e-27 Score=215.95 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=143.6
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
.+||+.+...+....+++. +.+.|.++++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 4 ~~~a~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~--~~~p~i~GhE~aG~Vv~vG~~v~ 80 (375)
T PLN02178 4 QNKAFGWAANDESGVLSPF-HFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF--SRYPIIPGHEIVGIATKVGKNVT 80 (375)
T ss_pred cceeEEEEEccCCCCceEE-eecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC--CCCCcccCceeeEEEEEECCCCC
Confidence 3556666555554456666 77888999999999999999999999999886532 34678999999999999999999
Q ss_pred CCCCCCEEEEe-----cCc--cc-------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccc
Q 024775 163 EFKEGDEVYGD-----INE--KA-------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL 216 (262)
Q Consensus 163 ~~~~Gd~V~~~-----~~~--~~-------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~ 216 (262)
+|++||+|+.. |.. .| + .+....|+|+||++++++.++++|+++++++++.+.+
T Consensus 81 ~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~ 160 (375)
T PLN02178 81 KFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLC 160 (375)
T ss_pred ccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhc
Confidence 99999999753 210 00 0 0112368999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcC--CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 217 AIETAYEGLERTG--FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 217 ~~~tA~~al~~~~--~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...|+|+++.... .++|++|+|.| +|++|++++|+||.+|++|+
T Consensus 161 ~~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi 206 (375)
T PLN02178 161 AGITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVT 206 (375)
T ss_pred cchHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEE
Confidence 9999999997654 46899999998 69999999999999999864
No 25
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.95 E-value=7.7e-27 Score=213.95 Aligned_cols=175 Identities=26% Similarity=0.324 Sum_probs=148.1
Q ss_pred ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
-+.+++|++.++++. ++++ +++.|+++++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus 7 ~~~~~~~~~~~~~~~--~~~~-~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~Vv~vG~~ 81 (357)
T PLN02514 7 EKKTTGWAARDPSGH--LSPY-TYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM--SNYPMVPGHEVVGEVVEVGSD 81 (357)
T ss_pred CceEEEEEEecCCCC--ceEE-eecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc--CCCCccCCceeeEEEEEECCC
Confidence 345899999999865 6666 88999999999999999999999999998886532 346789999999999999999
Q ss_pred CCCCCCCCEEEEe-----cCc--ccc-------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcc
Q 024775 161 VKEFKEGDEVYGD-----INE--KAL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL 214 (262)
Q Consensus 161 v~~~~~Gd~V~~~-----~~~--~~~-------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l 214 (262)
+++|++||+|+.. |.. .|. .+....|+|+||++++...++++|+++++++++.+
T Consensus 82 v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l 161 (357)
T PLN02514 82 VSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPL 161 (357)
T ss_pred cccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhh
Confidence 9999999999752 110 000 01123689999999999999999999999999999
Q ss_pred cchHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 215 PLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 215 ~~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++.+.|||+++.+. ..++|++|+|+| +|++|++++|+||.+|++|+
T Consensus 162 ~~~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi 208 (357)
T PLN02514 162 LCAGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVT 208 (357)
T ss_pred hhhHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEE
Confidence 99999999999764 457999999996 79999999999999999764
No 26
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.95 E-value=8.8e-27 Score=214.00 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=146.9
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
.||++++.+.++. ++++ +.+.|.++++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++
T Consensus 2 ~~ka~~~~~~~~~--~~~~-~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~ 75 (365)
T cd08277 2 KCKAAVAWEAGKP--LVIE-EIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVT 75 (365)
T ss_pred ccEEEEEccCCCC--cEEE-EEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC---CCCCeecccceeEEEEeeCCCCc
Confidence 4899999887654 6666 8899999999999999999999999999988654 35678999999999999999999
Q ss_pred CCCCCCEEEEecCccc------cCC--------------------------------CCCCCceeeEEEecCCCeEECCC
Q 024775 163 EFKEGDEVYGDINEKA------LEG--------------------------------PKQFGSLAEYTAVEERLLAPKPK 204 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~------~~~--------------------------------~~~~G~~ae~~~v~~~~~~~lP~ 204 (262)
.+++||+|++.....| ..+ ....|+|+||+.++.+.++++|+
T Consensus 76 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~ 155 (365)
T cd08277 76 NLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDP 155 (365)
T ss_pred cCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCC
Confidence 9999999987532111 000 01248999999999999999999
Q ss_pred CCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 205 NLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 205 ~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
++++++++.+.+++.|||+++ +..++++|++|+|+| +|++|++++|+||.+|+ +|+
T Consensus 156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi 213 (365)
T cd08277 156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRII 213 (365)
T ss_pred CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 999999999999999999987 468899999999997 79999999999999998 453
No 27
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.95 E-value=6.5e-27 Score=211.00 Aligned_cols=167 Identities=29% Similarity=0.394 Sum_probs=144.0
Q ss_pred eeEEEEcccCCc---ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 84 MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 84 ~ka~v~~~~g~~---~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
||++++.+++.+ +.+++. +.+.|.++++||+||+.++++|++|++.+.|.++.. ..+|.++|||++|+|+++|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~-~~~p~v~G~e~~G~V~~vG~~ 78 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLP-EPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGST-KALPVPPGFEGSGTVVAAGGG 78 (324)
T ss_pred CeEEEEeecCCCccccEEEec-ccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCC-CCCCcCCCcceEEEEEEECCC
Confidence 799999998865 567777 889999999999999999999999999998865432 356889999999999999999
Q ss_pred CCC-CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEE
Q 024775 161 VKE-FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239 (262)
Q Consensus 161 v~~-~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~ 239 (262)
+.+ |++||+|++... ..|+|+||++++++.++++|+++++++++.+++...|||..+..... .++.++|+
T Consensus 79 v~~~~~vGd~V~~~~~--------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~ 149 (324)
T cd08291 79 PLAQSLIGKRVAFLAG--------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVH 149 (324)
T ss_pred ccccCCCCCEEEecCC--------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEE
Confidence 986 999999998642 14899999999999999999999999999888888899866655555 55566665
Q ss_pred -cCchHHHHHHHHHHHHcCCccC
Q 024775 240 -NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 240 -Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++|++++|+||.+|++|+
T Consensus 150 ~~g~g~vG~~a~q~a~~~G~~vi 172 (324)
T cd08291 150 TAAASALGRMLVRLCKADGIKVI 172 (324)
T ss_pred ccCccHHHHHHHHHHHHcCCEEE
Confidence 7899999999999999999875
No 28
>PLN02827 Alcohol dehydrogenase-like
Probab=99.95 E-value=8.6e-27 Score=215.37 Aligned_cols=168 Identities=22% Similarity=0.242 Sum_probs=143.2
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
.||++++.++++ .++++ +.+.|.++++||+|||.++|||++|++.+.+.. .+|.++|||++|+|+++|++++
T Consensus 12 ~mka~~~~~~~~--~~~~~-e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v~ 83 (378)
T PLN02827 12 TCRAAVAWGAGE--ALVME-EVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGVT 83 (378)
T ss_pred eeEEEEEecCCC--CceEE-EeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCCc
Confidence 499999987664 36677 899999999999999999999999999887642 3578999999999999999999
Q ss_pred CCCCCCEEEEecCcccc-------------C---------------------C-----CCCCCceeeEEEecCCCeEECC
Q 024775 163 EFKEGDEVYGDINEKAL-------------E---------------------G-----PKQFGSLAEYTAVEERLLAPKP 203 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~-------------~---------------------~-----~~~~G~~ae~~~v~~~~~~~lP 203 (262)
+|++||+|++.....|. . + ....|+|+||+.+++..++++|
T Consensus 84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP 163 (378)
T PLN02827 84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD 163 (378)
T ss_pred ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence 99999999986431110 0 0 0024899999999999999999
Q ss_pred CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+++++++++.+.+++.++|+++. ..++++|++|||+| +|++|++++|+||.+|++
T Consensus 164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~ 219 (378)
T PLN02827 164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGAS 219 (378)
T ss_pred CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 99999999988888889998774 57899999999998 699999999999999985
No 29
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.95 E-value=1.7e-26 Score=208.42 Aligned_cols=168 Identities=38% Similarity=0.527 Sum_probs=148.7
Q ss_pred eEEEEccc---CCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775 85 KAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161 (262)
Q Consensus 85 ka~v~~~~---g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v 161 (262)
|||++.++ +.++.+++. +.+.|+++++||+|||.++++|+.|...+.+..+. ..+|.++|+|++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v 77 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDI-DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE--AGQPKILGWDAAGVVVAVGDEV 77 (336)
T ss_pred CceeeccccCCCCcccceec-ccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC--CCCCcccceeeEEEEEEeCCCC
Confidence 68999997 777788888 88999999999999999999999999988776432 3457899999999999999999
Q ss_pred CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCC-----CCE
Q 024775 162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSA-----GKS 235 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~-----g~~ 235 (262)
+.|++||+|+++.. ....|+|++|++++++.++++|+++++++++.+++++.|||+++. ..++++ |++
T Consensus 78 ~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~ 151 (336)
T TIGR02817 78 TLFKPGDEVWYAGD------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA 151 (336)
T ss_pred CCCCCCCEEEEcCC------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence 99999999997541 112589999999999999999999999999999999999999994 577776 999
Q ss_pred EEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775 236 ILVLNGSGGVGSLVIQVCYYY-LEFFF 261 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~-Ga~V~ 261 (262)
|+|+|++|++|++++|+||.+ |++|+
T Consensus 152 vlV~ga~g~vg~~~~~~ak~~~G~~vi 178 (336)
T TIGR02817 152 LLIIGGAGGVGSILIQLARQLTGLTVI 178 (336)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999998 98875
No 30
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=4.7e-26 Score=206.69 Aligned_cols=178 Identities=34% Similarity=0.475 Sum_probs=150.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC------------------CCCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------------------TDSPLPTV 145 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~------------------~~~~~p~~ 145 (262)
||++++..++.++.+.+.+..+.|.+.++||+|||.++++|++|++.+.|.++. ....+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 789999887766567676445777889999999999999999999988775431 12446789
Q ss_pred CCccEEEEEEEeCCCCCCCCCCCEEEEecCcccc----------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775 146 PGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL----------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215 (262)
Q Consensus 146 ~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~----------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~ 215 (262)
+|||++|+|+++|+++++|++||+|++.....+. .+....|++++|+.++...++++|+++++++++.++
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~ 160 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP 160 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence 9999999999999999999999999985322111 111225899999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 216 ~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.+.|||++++..++++|++|+|+|++|++|++++++|+.+|++++
T Consensus 161 ~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi 206 (350)
T cd08274 161 CSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206 (350)
T ss_pred cHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEE
Confidence 9999999999778999999999999889999999999999999875
No 31
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.94 E-value=1.6e-25 Score=202.72 Aligned_cols=172 Identities=31% Similarity=0.372 Sum_probs=147.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++++++.. ++++ +.+.|++.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++|+++.+
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~vG~~v~~ 75 (333)
T cd08296 1 YKAVQVTEPGGP--LELV-ERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG--LSYPRVPGHEVVGRIDAVGEGVSR 75 (333)
T ss_pred CeEEEEccCCCC--ceEE-eccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC--CCCCcccCcceeEEEEEECCCCcc
Confidence 799999988533 6676 88999999999999999999999999998886543 345789999999999999999999
Q ss_pred CCCCCEEEEecC----ccc---------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDIN----EKA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~----~~~---------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
+++||+|++... ..| ..+....|++++|+.++...++++|+++++++++.+++.+.++|++
T Consensus 76 ~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~ 155 (333)
T cd08296 76 WKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA 155 (333)
T ss_pred CCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHH
Confidence 999999986310 000 0112235899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..++++|++|+|+| +|++|++++|+||.+|++|+
T Consensus 156 ~~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi 191 (333)
T cd08296 156 LRNSGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTV 191 (333)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence 9878999999999999 89999999999999999864
No 32
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.94 E-value=1.8e-25 Score=200.80 Aligned_cols=168 Identities=36% Similarity=0.531 Sum_probs=150.2
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+|||+++.+++....++++ +.+.|.+.++||+|||.++++|+.|.....|.++. ...+|.++|+|++|+|+++|+++.
T Consensus 1 ~m~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~ 78 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIG-ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP-PPGSSEILGLEVAGYVEDVGSDVK 78 (334)
T ss_pred CcEEEEEEecCCCcceEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEeCCCCC
Confidence 5999999998887667777 67778899999999999999999999988876542 234467899999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG 241 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga 241 (262)
.+++||+|+++.. .|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.. ..+++|++|+|+|+
T Consensus 79 ~~~~Gd~V~~~~~---------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga 149 (334)
T PTZ00354 79 RFKEGDRVMALLP---------GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAG 149 (334)
T ss_pred CCCCCCEEEEecC---------CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence 9999999998752 5899999999999999999999999999999999999999965 78999999999999
Q ss_pred chHHHHHHHHHHHHcCCccC
Q 024775 242 SGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|++|++++++|+.+|++++
T Consensus 150 ~g~~g~~~~~~a~~~g~~v~ 169 (334)
T PTZ00354 150 ASGVGTAAAQLAEKYGAATI 169 (334)
T ss_pred CchHHHHHHHHHHHcCCEEE
Confidence 99999999999999999754
No 33
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.94 E-value=1.3e-25 Score=209.54 Aligned_cols=172 Identities=23% Similarity=0.343 Sum_probs=135.6
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhH-cCCCCC----CCCCCCCCCCccEEEEEEEe
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKA----TDSPLPTVPGYDVAGVVVKV 157 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~-~g~~~~----~~~~~p~~~G~e~vG~Vv~v 157 (262)
+||++++.++++ ++++ +.+.|.+.++||+|||.++|||++|++.+ .|.... ...++|.++|||++|+|+++
T Consensus 2 ~~~a~~~~~~~~---l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v 77 (410)
T cd08238 2 KTKAWRMYGKGD---LRLE-KFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV 77 (410)
T ss_pred CcEEEEEEcCCc---eEEE-ecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence 589999988775 7777 89999999999999999999999999976 454211 11246889999999999999
Q ss_pred CCCCC-CCCCCCEEEEecCcccc-------CCCCCCCceeeEEEecCC----CeEECCCCCCHhhHhcc-cch-HHHHHH
Q 024775 158 GTQVK-EFKEGDEVYGDINEKAL-------EGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGL-PLA-IETAYE 223 (262)
Q Consensus 158 G~~v~-~~~~Gd~V~~~~~~~~~-------~~~~~~G~~ae~~~v~~~----~~~~lP~~~~~~~aa~l-~~~-~~tA~~ 223 (262)
|++|+ .|++||+|++.....|. .+....|+|+||++++++ .++++|+++++++++.+ +.. ..++|.
T Consensus 78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~ 157 (410)
T cd08238 78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT 157 (410)
T ss_pred CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence 99998 69999999886432211 112246999999999986 68999999999988855 322 123443
Q ss_pred HH---------HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 224 GL---------ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 224 al---------~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
++ ++.++++|++|+|+|++|++|++++|+||.+|+
T Consensus 158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~ 201 (410)
T cd08238 158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPI 201 (410)
T ss_pred hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhccc
Confidence 32 346789999999999899999999999999864
No 34
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.94 E-value=9.6e-26 Score=205.83 Aligned_cols=169 Identities=20% Similarity=0.337 Sum_probs=140.8
Q ss_pred EEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCC
Q 024775 87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKE 166 (262)
Q Consensus 87 ~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~ 166 (262)
|+++++++. ++++ +.+.|.++++||+|||.++++|++|++.+.+.... ...+|.++|||++|+|+++|+++..+ +
T Consensus 2 ~~~~~~g~~--~~~~-~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~-~~~~p~i~GhE~~G~V~~vG~~v~~~-~ 76 (349)
T TIGR03201 2 WMMTEPGKP--MVKT-RVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRT-NHALPLALGHEISGRVIQAGAGAASW-I 76 (349)
T ss_pred ceEecCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecccchHHHcCCCCc-cCCCCeeccccceEEEEEeCCCcCCC-C
Confidence 566677763 5666 88999999999999999999999999887443221 13567899999999999999999877 9
Q ss_pred CCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCC------CCCHhhHhcccchHHHHH
Q 024775 167 GDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPK------NLDFVQAAGLPLAIETAY 222 (262)
Q Consensus 167 Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~------~~~~~~aa~l~~~~~tA~ 222 (262)
||+|+......| +.+....|+|+||+.++.+.++++|+ ++++++++.+++.+.++|
T Consensus 77 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~ 156 (349)
T TIGR03201 77 GKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPY 156 (349)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHH
Confidence 999987432111 11222369999999999999999999 889999998999999999
Q ss_pred HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++.+..+++|++|+|+|+ |++|++++|+|+.+|++|+
T Consensus 157 ~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi 194 (349)
T TIGR03201 157 QAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVV 194 (349)
T ss_pred HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEE
Confidence 9998888999999999996 9999999999999999764
No 35
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.94 E-value=1.4e-25 Score=204.48 Aligned_cols=172 Identities=30% Similarity=0.351 Sum_probs=142.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC---------CCCCCCCCCCccEEEEE
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA---------TDSPLPTVPGYDVAGVV 154 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~---------~~~~~p~~~G~e~vG~V 154 (262)
||||++.++++ ++++ +++.|++.++||+||+.++++|++|++.+.+.... ....+|.++|||++|+|
T Consensus 1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V 76 (351)
T cd08233 1 MKAARYHGRKD---IRVE-EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV 76 (351)
T ss_pred CceEEEecCCc---eEEE-eccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence 79999988664 7777 88999999999999999999999999876542110 01236789999999999
Q ss_pred EEeCCCCCCCCCCCEEEEecCcccc------------------CCCC-CCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775 155 VKVGTQVKEFKEGDEVYGDINEKAL------------------EGPK-QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215 (262)
Q Consensus 155 v~vG~~v~~~~~Gd~V~~~~~~~~~------------------~~~~-~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~ 215 (262)
+++|+++++|++||+|++.....|. .+.. ..|+|++|+.++...++++|+++++++++.+
T Consensus 77 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~- 155 (351)
T cd08233 77 VEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV- 155 (351)
T ss_pred EEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence 9999999999999999975322110 0011 2589999999999999999999999888765
Q ss_pred chHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 216 ~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
..+.+||+++...++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 156 ~~~~ta~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~ 201 (351)
T cd08233 156 EPLAVAWHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKII 201 (351)
T ss_pred cHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 6778999999778999999999998 69999999999999999 553
No 36
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=2e-25 Score=203.24 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=137.9
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||++++++++. ++++ +.+.|++ .++||+|||.++++|++|++.+..... ..+|.++|||++|+|+++|++++
T Consensus 1 Mka~~~~~~~~---~~~~-~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~---~~~p~i~G~e~~G~V~~vG~~v~ 73 (347)
T PRK10309 1 MKSVVNDTDGI---VRVA-ESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA---HYYPITLGHEFSGYVEAVGSGVD 73 (347)
T ss_pred CceEEEeCCCc---eEEE-ECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC---CCCCcccccceEEEEEEeCCCCC
Confidence 79999988775 6676 8899988 589999999999999999875432111 12478999999999999999999
Q ss_pred CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
+|++||+|++.....|. .+....|+|+||+.++++.++++|+++++++++.+. .+.++|++
T Consensus 74 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~ 152 (347)
T PRK10309 74 DLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA 152 (347)
T ss_pred CCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHH
Confidence 99999999986422111 112236999999999999999999999999988763 45568888
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+....+++|++|+|+| +|++|++++|+|+.+|++
T Consensus 153 ~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~ 186 (347)
T PRK10309 153 FHLAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAK 186 (347)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 8778899999999997 799999999999999997
No 37
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.94 E-value=2.1e-25 Score=203.95 Aligned_cols=171 Identities=25% Similarity=0.334 Sum_probs=145.0
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC-
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE- 163 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~- 163 (262)
|++++.++++ .++++ +.+.|.++++||+|||.++++|++|++...|.++. ..+|.++|||++|+|+++|+++++
T Consensus 2 ka~~~~~~~~--~l~~~-~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~ 76 (361)
T cd08231 2 RAAVLTGPGK--PLEIR-EVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR--VPLPIILGHEGVGRVVALGGGVTTD 76 (361)
T ss_pred eEEEEcCCCC--CCEEE-eccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC--CCCCcccccCCceEEEEeCCCcccc
Confidence 7899998883 37777 88999999999999999999999999999887642 356789999999999999999986
Q ss_pred -----CCCCCEEEEecCccc------------------cCC-------CCCCCceeeEEEecCC-CeEECCCCCCHhhHh
Q 024775 164 -----FKEGDEVYGDINEKA------------------LEG-------PKQFGSLAEYTAVEER-LLAPKPKNLDFVQAA 212 (262)
Q Consensus 164 -----~~~Gd~V~~~~~~~~------------------~~~-------~~~~G~~ae~~~v~~~-~~~~lP~~~~~~~aa 212 (262)
|++||+|++.....| ..+ ....|+|++|+.++++ .++++|+++++++++
T Consensus 77 ~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa 156 (361)
T cd08231 77 VAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAA 156 (361)
T ss_pred ccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHH
Confidence 999999998732111 000 1135899999999986 799999999999898
Q ss_pred cccchHHHHHHHHHHcC-CCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 213 GLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
.+++++.|||+++.+.. .++|++|||+| +|++|++++|+|+.+|+ +|+
T Consensus 157 ~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~ 206 (361)
T cd08231 157 PANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVI 206 (361)
T ss_pred HhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 88899999999998754 45999999997 79999999999999999 664
No 38
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.94 E-value=1.3e-25 Score=203.25 Aligned_cols=169 Identities=31% Similarity=0.392 Sum_probs=149.1
Q ss_pred eeEEEEcccCCc-ceEEEEeeecCCCCCC-CeEEEEEEEEecChhhHHhHcCCCCCCCC---CCCCCCCccEEEEEEEeC
Q 024775 84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKFKATDS---PLPTVPGYDVAGVVVKVG 158 (262)
Q Consensus 84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~~-~eVlVkV~a~~i~~sD~~~~~g~~~~~~~---~~p~~~G~e~vG~Vv~vG 158 (262)
||||++.+.+.+ +.++++ +.+.|.+.+ +||+||+.++++|+.|...+.|..+.... ..|.++|||++|+|+++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG 79 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLE-SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG 79 (341)
T ss_pred CceEEEccCCCchhheEEe-ecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence 899999988865 457777 888888887 99999999999999999998886542211 156789999999999999
Q ss_pred CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEE
Q 024775 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSIL 237 (262)
Q Consensus 159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~Vl 237 (262)
+++..|++||+|++... ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++.. ..+++|++||
T Consensus 80 ~~v~~~~~Gd~V~~~~~--------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vl 151 (341)
T cd08290 80 SGVKSLKPGDWVIPLRP--------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVI 151 (341)
T ss_pred CCCCCCCCCCEEEecCC--------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEE
Confidence 99999999999998652 25899999999999999999999999999999999999999965 6899999999
Q ss_pred EEcCchHHHHHHHHHHHHcCCccC
Q 024775 238 VLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 238 I~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|+|++|++|++++|+|+.+|++++
T Consensus 152 I~g~~g~vg~~~~~~a~~~g~~v~ 175 (341)
T cd08290 152 QNGANSAVGQAVIQLAKLLGIKTI 175 (341)
T ss_pred EccchhHHHHHHHHHHHHcCCeEE
Confidence 999899999999999999999864
No 39
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.94 E-value=3e-25 Score=199.74 Aligned_cols=168 Identities=28% Similarity=0.321 Sum_probs=150.9
Q ss_pred ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+||+|++.++|.+..++++ +++.|.+.++||+||+.++++|++|++...|.++. ..+|.++|||++|+|+.+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~vG~~v~ 77 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAV-EFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP--PSLPSGLGTEAAGVVSKVGSGVK 77 (327)
T ss_pred CceEEEEeccCChhHeEEe-eccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC--CCCCCccCcceEEEEEEeCCCCC
Confidence 5999999999888888888 88999999999999999999999999988776543 23577899999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG 241 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga 241 (262)
.+++||+|+.... ..|+|++|+.++.+.++++|+++++++++.++..+.++|.++.. ..+++|++|+|+|+
T Consensus 78 ~~~~Gd~V~~~~~--------~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~ 149 (327)
T PRK10754 78 HIKVGDRVVYAQS--------ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA 149 (327)
T ss_pred CCCCCCEEEECCC--------CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 9999999986431 25899999999999999999999999999888899999999864 78999999999999
Q ss_pred chHHHHHHHHHHHHcCCccC
Q 024775 242 SGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|.+|++++|+||.+|++|+
T Consensus 150 ~g~ig~~~~~lak~~G~~v~ 169 (327)
T PRK10754 150 AGGVGLIACQWAKALGAKLI 169 (327)
T ss_pred CcHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999874
No 40
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.93 E-value=3.7e-25 Score=200.76 Aligned_cols=163 Identities=25% Similarity=0.303 Sum_probs=136.4
Q ss_pred eeEEEEcccCCcceEEEEeeecC----CCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccE--EEEEEEe
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTV----PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--AGVVVKV 157 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~----p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~--vG~Vv~v 157 (262)
+|+|....+. .+.|+++ +.++ |+|++|||||||+|++||+.|++.+.|.... ...+|+++|+++ .|.+..+
T Consensus 8 ~~~~~~~~~~-~~~~~~~-~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~-~~~~p~~~g~~~~g~~~~~~v 84 (338)
T cd08295 8 LKAYVTGFPK-ESDLELR-TTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS-LYLPPFKPGEVITGYGVAKVV 84 (338)
T ss_pred EecCCCCCCC-ccceEEE-EecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc-ccCCCcCCCCeEeccEEEEEE
Confidence 6777754544 4568888 7776 8899999999999999999999988885332 124577888754 4566667
Q ss_pred CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecC-CCeEECC-CCCCHh-hHhcccchHHHHHHHHH-HcCCCCC
Q 024775 158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKP-KNLDFV-QAAGLPLAIETAYEGLE-RTGFSAG 233 (262)
Q Consensus 158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~-~~~~~lP-~~~~~~-~aa~l~~~~~tA~~al~-~~~~~~g 233 (262)
|+++..|++||+|++ .|+|+||+++++ ..++++| ++++++ +++.+++++.|||+++. ..++++|
T Consensus 85 ~~~v~~~~vGd~V~~------------~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g 152 (338)
T cd08295 85 DSGNPDFKVGDLVWG------------FTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKG 152 (338)
T ss_pred ecCCCCCCCCCEEEe------------cCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence 888889999999986 368999999999 7999995 678876 78889999999999995 4789999
Q ss_pred CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 234 KSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++|||+|++|++|++++|+||.+|++|+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi 180 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVV 180 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999874
No 41
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.93 E-value=5.9e-25 Score=198.89 Aligned_cols=174 Identities=32% Similarity=0.408 Sum_probs=147.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++.+++.. +++. +.+.|++.++||+||+.++++|++|+....|.++. ....+|.++|+|++|+|+++|+++.
T Consensus 1 ~ka~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~ 77 (340)
T cd05284 1 MKAARLYEYGKP--LRLE-DVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD 77 (340)
T ss_pred CeeeEeccCCCC--ceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence 799999987643 6666 78889999999999999999999999998886543 2355678999999999999999999
Q ss_pred CCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
.|++||+|+++....+ ..+....|+|++|+.++.+.++++|+++++++++.+++.+.|||++
T Consensus 78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~ 157 (340)
T cd05284 78 GLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHA 157 (340)
T ss_pred cCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence 9999999998642110 1122346899999999999999999999999999999999999999
Q ss_pred HHHc--CCCCCCEEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775 225 LERT--GFSAGKSILVLNGSGGVGSLVIQVCYYYL-EFFF 261 (262)
Q Consensus 225 l~~~--~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V~ 261 (262)
+... .+.+|++|||+| +|++|++++|+|+.+| .+|+
T Consensus 158 l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~ 196 (340)
T cd05284 158 VKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVI 196 (340)
T ss_pred HHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEE
Confidence 9653 688999999999 6679999999999999 6764
No 42
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.93 E-value=3.5e-25 Score=200.91 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=127.4
Q ss_pred cceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEE
Q 024775 95 VDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG 172 (262)
Q Consensus 95 ~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~ 172 (262)
++.++++ +.+.|++. +|||||||.|+|||+.|+........ ....++|.++|||++|+|+++|++++.|++||+|++
T Consensus 20 ~~~~~~~-~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 98 (345)
T cd08293 20 AENFRVE-ECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS 98 (345)
T ss_pred ccceEEE-eccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence 3678888 88999875 99999999999999999643321111 111346789999999999999999999999999987
Q ss_pred ecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHh----hHhcccchHHHHHHHHH-HcCCCCC--CEEEEEcCchHH
Q 024775 173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV----QAAGLPLAIETAYEGLE-RTGFSAG--KSILVLNGSGGV 245 (262)
Q Consensus 173 ~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~----~aa~l~~~~~tA~~al~-~~~~~~g--~~VlI~Ga~G~v 245 (262)
+ .++|+||++++++.++++|+++++. .+++++.++.|||+++. ..++++| ++|||+|++|++
T Consensus 99 ~-----------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~v 167 (345)
T cd08293 99 F-----------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGAC 167 (345)
T ss_pred c-----------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHH
Confidence 3 1579999999999999999985332 24566788999999995 4678877 999999999999
Q ss_pred HHHHHHHHHHcCC-ccC
Q 024775 246 GSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 246 G~~aiqlAk~~Ga-~V~ 261 (262)
|++++|+||.+|+ +|+
T Consensus 168 G~~aiqlAk~~G~~~Vi 184 (345)
T cd08293 168 GSLAGQIGRLLGCSRVV 184 (345)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 9999999999998 665
No 43
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.93 E-value=5e-25 Score=203.14 Aligned_cols=171 Identities=25% Similarity=0.308 Sum_probs=145.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+.++...+.. ++++ +.+.|.+.++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.
T Consensus 8 ~~a~~~~~~~~~--~~l~-~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~~ 81 (373)
T cd08299 8 CKAAVLWEPKKP--FSIE-EIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGVTT 81 (373)
T ss_pred eEEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC---CCCCccccccceEEEEEeCCCCcc
Confidence 889888876654 6666 8899999999999999999999999999988652 346789999999999999999999
Q ss_pred CCCCCEEEEecCc--------------cccC-------------------------CCCCCCceeeEEEecCCCeEECCC
Q 024775 164 FKEGDEVYGDINE--------------KALE-------------------------GPKQFGSLAEYTAVEERLLAPKPK 204 (262)
Q Consensus 164 ~~~Gd~V~~~~~~--------------~~~~-------------------------~~~~~G~~ae~~~v~~~~~~~lP~ 204 (262)
+++||+|+++... .|.. .....|+|+||++++++.++++|+
T Consensus 82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~ 161 (373)
T cd08299 82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA 161 (373)
T ss_pred CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence 9999999886211 0000 001258999999999999999999
Q ss_pred CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
++++++++.+.+++.+||+++. ..++++|++|+|+| +|++|++++++|+.+|+ +|+
T Consensus 162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi 219 (373)
T cd08299 162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRII 219 (373)
T ss_pred CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999874 58899999999996 79999999999999998 554
No 44
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=9.4e-25 Score=194.20 Aligned_cols=161 Identities=33% Similarity=0.408 Sum_probs=143.4
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++.+.+ +..++++ +.+.|.++++||+||+.++++|+.|.+...+. ..+.++|+|++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~~ 72 (305)
T cd08270 1 MRALVVDPDA-PLRLRLG-EVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGSG 72 (305)
T ss_pred CeEEEEccCC-CceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCCC
Confidence 6899998866 6668777 88889999999999999999999999876521 22568999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCch
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG 243 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G 243 (262)
|++||+|+++.. .|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.+....+|++|+|+|+.|
T Consensus 73 ~~~Gd~V~~~~~---------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~ 143 (305)
T cd08270 73 PAVGARVVGLGA---------MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASG 143 (305)
T ss_pred CCCCCEEEEecC---------CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCc
Confidence 999999998752 58999999999999999999999999999999999999999776555699999999889
Q ss_pred HHHHHHHHHHHHcCCccC
Q 024775 244 GVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 244 ~vG~~aiqlAk~~Ga~V~ 261 (262)
++|++++++|+.+|++|+
T Consensus 144 ~~g~~~~~~a~~~g~~v~ 161 (305)
T cd08270 144 GVGRFAVQLAALAGAHVV 161 (305)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 999999999999999875
No 45
>PRK10083 putative oxidoreductase; Provisional
Probab=99.93 E-value=8.6e-25 Score=197.92 Aligned_cols=169 Identities=24% Similarity=0.247 Sum_probs=142.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++.+++. ++++ +.+.|.++++||+||+.++++|++|++.+.|..+. .++|.++|||++|+|+++|+++..
T Consensus 1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~ 74 (339)
T PRK10083 1 MKSIVIEKPNS---LAIE-ERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF--AKYPRVIGHEFFGVIDAVGEGVDA 74 (339)
T ss_pred CeEEEEecCCe---eEEE-eccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc--CCCCcccccceEEEEEEECCCCcc
Confidence 78999988764 7777 88999999999999999999999999998886543 246889999999999999999999
Q ss_pred CCCCCEEEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++||+|+......|. . +....|+|++|+.++...++++|+++++++++ +...+.++|+++
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~ 153 (339)
T PRK10083 75 ARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT 153 (339)
T ss_pred CCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH
Confidence 9999999864321110 0 11235899999999999999999999998776 556778888766
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHH-cCCcc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYY-YLEFF 260 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga~V 260 (262)
+..++++|++|+|+| +|++|++++|+|+. +|+++
T Consensus 154 ~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~ 188 (339)
T PRK10083 154 GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKA 188 (339)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCE
Confidence 778999999999999 89999999999997 59863
No 46
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.93 E-value=8.9e-25 Score=197.58 Aligned_cols=171 Identities=25% Similarity=0.284 Sum_probs=145.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++++++.... ++ +.+.|.+.++||+|||.++++|++|++.+.|..+. ..|.++|||++|+|+++|++++.
T Consensus 1 mka~~~~~~~~~~~--~~-~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~~ 74 (338)
T PRK09422 1 MKAAVVNKDHTGDV--VV-EKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVTS 74 (338)
T ss_pred CeEEEecCCCCCce--EE-EecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCcc
Confidence 89999999887543 44 88999999999999999999999999998886542 23678999999999999999999
Q ss_pred CCCCCEEEEecCc-------cc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDINE-------KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~~-------~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
|++||+|++.... .+ ..+....|++++|+.++...++++|+++++++++.++..+.|||++
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~ 154 (338)
T PRK09422 75 LKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKA 154 (338)
T ss_pred CCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHH
Confidence 9999999872110 00 0011236899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~ 261 (262)
++.+++++|++|||+| +|++|++++++|+.+ |++|+
T Consensus 155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~ 191 (338)
T PRK09422 155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVI 191 (338)
T ss_pred HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEE
Confidence 9778999999999999 799999999999984 98865
No 47
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.93 E-value=7.9e-25 Score=196.86 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=133.6
Q ss_pred ceeEEEEcc-c-CCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775 83 EMKAWLYGE-Y-GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG 158 (262)
Q Consensus 83 ~~ka~v~~~-~-g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG 158 (262)
+||+|++.+ + ++. +.++++ +.+.|+|++|||+|||.+++||+.|.....+ ..++|.++|+|++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~evlVkv~a~~in~~~~~~~~~-----~~~~p~v~G~e~~G~V~~-- 73 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELV-EEELPPLKDGEVLCEALFLSVDPYMRPYSKR-----LNEGDTMIGTQVAKVIES-- 73 (329)
T ss_pred CceEEEEecCCCCCCCccceEEE-ecCCCCCCCCcEEEEEEEEecCHHHhccccc-----CCCCCcEecceEEEEEec--
Confidence 599999999 4 554 779998 8999999999999999999999987642111 124578999999999985
Q ss_pred CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCC---CeEECCCCCC-----HhhHhcccchHHHHHHHHH-HcC
Q 024775 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER---LLAPKPKNLD-----FVQAAGLPLAIETAYEGLE-RTG 229 (262)
Q Consensus 159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~---~~~~lP~~~~-----~~~aa~l~~~~~tA~~al~-~~~ 229 (262)
.++.|++||+|++. ++|++|++++.+ .++++|++++ ....+.+++.+.|||+++. ..+
T Consensus 74 -~~~~~~~Gd~V~~~------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~ 140 (329)
T cd08294 74 -KNSKFPVGTIVVAS------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICK 140 (329)
T ss_pred -CCCCCCCCCEEEee------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcC
Confidence 45679999999873 478999999999 9999999987 2333467889999999985 588
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++|++|||+|++|++|++++|+|+.+|++|+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi 172 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVI 172 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999875
No 48
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.93 E-value=7.7e-25 Score=196.95 Aligned_cols=173 Identities=34% Similarity=0.494 Sum_probs=147.0
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++..++ .+.++++ +.+.|+++++||+||+.++++|++|+..+.+.. . ..+|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~--~~~~~~~g~e~~G~v~~vG~~v~~ 75 (325)
T cd08264 1 MKALVFEKSG-IENLKVE-DVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-V--KPMPHIPGAEFAGVVEEVGDHVKG 75 (325)
T ss_pred CeeEEeccCC-CCceEEE-eccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-C--CCCCeecccceeEEEEEECCCCCC
Confidence 7899998776 5557777 777788999999999999999999998876421 1 235678999999999999999999
Q ss_pred CCCCCEEEEecCccc------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
|++||+|+......| . .+....|+|++|+.++...++++|+++++++++.+++.+.+||+++
T Consensus 76 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l 155 (325)
T cd08264 76 VKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL 155 (325)
T ss_pred CCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence 999999997632111 0 0111368999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...++++|++|+|+|++|++|++++++|+.+|++|+
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~ 191 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI 191 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE
Confidence 888999999999999889999999999999999864
No 49
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.93 E-value=1.6e-24 Score=194.05 Aligned_cols=170 Identities=32% Similarity=0.369 Sum_probs=148.3
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-CCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
|||+++.+++....+++. +.+.|.+.++||+|++.++++|+.|+....|..+.. ....|.++|+|++|+|+++|+++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~ 79 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPE-DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD 79 (324)
T ss_pred CeEEEEcCCCCccceEEe-ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence 799999888877667776 667777899999999999999999999887754321 234567899999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCc
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~ 242 (262)
.+++||+|++... ...|+|++|+.++...++++|+++++++++.+++.+.|||..++..+++++++|+|+|++
T Consensus 80 ~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~ 152 (324)
T cd08244 80 PAWLGRRVVAHTG-------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAA 152 (324)
T ss_pred CCCCCCEEEEccC-------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 9999999998652 135899999999999999999999999999999999999766677899999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++|+.+|++|+
T Consensus 153 ~~~g~~~~~la~~~g~~v~ 171 (324)
T cd08244 153 GGLGSLLVQLAKAAGATVV 171 (324)
T ss_pred chHHHHHHHHHHHCCCEEE
Confidence 9999999999999999875
No 50
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.93 E-value=1.2e-24 Score=201.46 Aligned_cols=182 Identities=31% Similarity=0.440 Sum_probs=148.8
Q ss_pred CcccceeEEEEcc--cCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-------CCC-CCCCCC
Q 024775 79 TVPSEMKAWLYGE--YGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-------DSP-LPTVPG 147 (262)
Q Consensus 79 ~~p~~~ka~v~~~--~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-------~~~-~p~~~G 147 (262)
.+|.+||++++.. .+.+ +.++++ +.+.|.++++||+||+.+++||.+|++...+..... ... .+.++|
T Consensus 8 ~~~~~~~a~~~~~~~~g~~~~~~~~~-~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G 86 (393)
T cd08246 8 VVPEKMYAFAIRPERYGDPAQAIQLE-DVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGG 86 (393)
T ss_pred cCchhhhheeeecccCCCcccceEEe-ecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccc
Confidence 5899999999863 3434 347777 889999999999999999999999998876641100 001 125889
Q ss_pred ccEEEEEEEeCCCCCCCCCCCEEEEecCccc------cCC-------------CCCCCceeeEEEecCCCeEECCCCCCH
Q 024775 148 YDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------LEG-------------PKQFGSLAEYTAVEERLLAPKPKNLDF 208 (262)
Q Consensus 148 ~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~------~~~-------------~~~~G~~ae~~~v~~~~~~~lP~~~~~ 208 (262)
||++|+|+++|++++.+++||+|++.+...| ..+ ....|+|++|+.++...++++|+++++
T Consensus 87 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~ 166 (393)
T cd08246 87 SDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSW 166 (393)
T ss_pred cceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCH
Confidence 9999999999999999999999998753111 110 012589999999999999999999999
Q ss_pred hhHhcccchHHHHHHHHHH---cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 209 VQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 209 ~~aa~l~~~~~tA~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++++.+++.+.|||+++.. +++++|++|+|+|+.|++|++++++|+.+|++++
T Consensus 167 ~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv 222 (393)
T cd08246 167 EEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPV 222 (393)
T ss_pred HHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999853 5789999999999889999999999999999864
No 51
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.93 E-value=1.4e-24 Score=194.93 Aligned_cols=173 Identities=32% Similarity=0.368 Sum_probs=149.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++...+. .++++ +.+.|.+.++||+|++.++++|+.|++.+.|.++. .+.|.++|+|++|+|+++|++++.
T Consensus 1 m~a~~~~~~~~--~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~G~~v~~ 75 (332)
T cd08259 1 MKAAILHKPNK--PLQIE-EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGVER 75 (332)
T ss_pred CeEEEEecCCC--ceEEE-EccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC--CCCCeeccccceEEEEEECCCCcc
Confidence 78999977332 37777 88899999999999999999999999998886653 345789999999999999999999
Q ss_pred CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++||+|+++....| ..+....|++++|+.++...++++|+++++++++.+++++.+||+++
T Consensus 76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l 155 (332)
T cd08259 76 FKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL 155 (332)
T ss_pred CCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHH
Confidence 999999998652111 01112368999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+...+++|++++|+|++|++|++++++++..|++|+
T Consensus 156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~ 191 (332)
T cd08259 156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVI 191 (332)
T ss_pred HHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence 778899999999999999999999999999999874
No 52
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.93 E-value=1.5e-24 Score=195.76 Aligned_cols=173 Identities=32% Similarity=0.399 Sum_probs=149.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++.++++. ++++ +.+.|.+.+|||+||+.++++|+.|++...|.++. .++|.++|+|++|+|+++|+++..
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~g~~~~~ 75 (334)
T PRK13771 1 MKAVILPGFKQG--YRIE-EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENVKG 75 (334)
T ss_pred CeeEEEcCCCCC--cEEE-eCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC--CCCCeeccccceEEEEEeCCCCcc
Confidence 789999988863 6676 88999999999999999999999999988886543 345788999999999999999988
Q ss_pred CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++||+|++.....| ..+....|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++
T Consensus 76 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~ 155 (334)
T PRK13771 76 FKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL 155 (334)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHH
Confidence 999999998641111 01112268999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
....++++++|+|+|++|.+|++++|+|+..|++++
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi 191 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVI 191 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEE
Confidence 777899999999999889999999999999999864
No 53
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.93 E-value=1.1e-24 Score=200.08 Aligned_cols=170 Identities=28% Similarity=0.331 Sum_probs=145.2
Q ss_pred cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161 (262)
Q Consensus 82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v 161 (262)
++|||+++.+++.. ++++ +.+.|.+.++||+|||.++++|++|++...|.++ ..+|.++|+|++|+|+++|+++
T Consensus 1 ~~~~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v 74 (365)
T cd08278 1 MKTTAAVVREPGGP--FVLE-DVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP---TPLPAVLGHEGAGVVEAVGSAV 74 (365)
T ss_pred CccEEeeeccCCCc--ceEE-EeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC---CCCCcccccceeEEEEEeCCCc
Confidence 36899999987654 5666 8899999999999999999999999999988654 3457899999999999999999
Q ss_pred CCCCCCCEEEEecCcccc------C---------------C--------------------CCCCCceeeEEEecCCCeE
Q 024775 162 KEFKEGDEVYGDINEKAL------E---------------G--------------------PKQFGSLAEYTAVEERLLA 200 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~~~~------~---------------~--------------------~~~~G~~ae~~~v~~~~~~ 200 (262)
..|++||+|++... .|. . + ....|+|++|+.++++.++
T Consensus 75 ~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~ 153 (365)
T cd08278 75 TGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVV 153 (365)
T ss_pred ccCCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEE
Confidence 99999999996321 000 0 0 0124899999999999999
Q ss_pred ECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 201 PKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 201 ~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++|+++++++++.+++++.|||.++. ...+++|++|+|+| +|++|++++|+|+.+|++
T Consensus 154 ~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~ 212 (365)
T cd08278 154 KVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCT 212 (365)
T ss_pred ECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999984 57899999999997 799999999999999995
No 54
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.93 E-value=1.3e-24 Score=198.09 Aligned_cols=169 Identities=26% Similarity=0.316 Sum_probs=144.4
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++.++++ ++++ +.+.|.+.++||+|||.++++|++|++.+.+..+. ..+|.++|||++|+|+++|+++.+
T Consensus 1 mka~~~~~~~~---~~l~-~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~--~~~~~~~G~e~~G~V~~vG~~v~~ 74 (351)
T cd08285 1 MKAFAMLGIGK---VGWI-EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG--ERHGMILGHEAVGVVEEVGSEVKD 74 (351)
T ss_pred CceEEEccCCc---cEEE-ECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC--CCCCcccCcceEEEEEEecCCcCc
Confidence 79999998875 5565 78888899999999999999999999988776543 345789999999999999999999
Q ss_pred CCCCCEEEEecCcccc-------------C--------CCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHH
Q 024775 164 FKEGDEVYGDINEKAL-------------E--------GPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIET 220 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~-------------~--------~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~t 220 (262)
+++||+|++.....|. . +....|+|+||+.++.. .++++|+++++++++.++..+.|
T Consensus 75 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~t 154 (351)
T cd08285 75 FKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154 (351)
T ss_pred cCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhh
Confidence 9999999984311110 0 01136899999999974 89999999999999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
||+++++.++++|++|||+| +|++|++++|+||.+|+.
T Consensus 155 a~~~~~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~ 192 (351)
T cd08285 155 GFHGAELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAG 192 (351)
T ss_pred HHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 99998888999999999997 799999999999999995
No 55
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.93 E-value=1.5e-24 Score=201.41 Aligned_cols=182 Identities=31% Similarity=0.421 Sum_probs=149.8
Q ss_pred CcccceeEEEEcc--cCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC--------CCCCCC-CCC
Q 024775 79 TVPSEMKAWLYGE--YGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--------TDSPLP-TVP 146 (262)
Q Consensus 79 ~~p~~~ka~v~~~--~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~--------~~~~~p-~~~ 146 (262)
.+|++||||++.. ++++ +.+++. +.+.|.+.++||+||+.++++|..|.+...+.... .....| .++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (398)
T TIGR01751 3 VVPETMYAFAIREERDGDPRQAIQLE-VVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHII 81 (398)
T ss_pred ccchhhhheEEecccCCCcccceEEe-ecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceec
Confidence 4789999999965 6665 568887 88999999999999999999999998776553210 000123 379
Q ss_pred CccEEEEEEEeCCCCCCCCCCCEEEEecCccc------cC-------------CCCCCCceeeEEEecCCCeEECCCCCC
Q 024775 147 GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------LE-------------GPKQFGSLAEYTAVEERLLAPKPKNLD 207 (262)
Q Consensus 147 G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~------~~-------------~~~~~G~~ae~~~v~~~~~~~lP~~~~ 207 (262)
|||++|+|+++|++++.+++||+|++.+...| .. .....|+|+||+.+++..++++|++++
T Consensus 82 G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~ 161 (398)
T TIGR01751 82 GSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLT 161 (398)
T ss_pred ccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCC
Confidence 99999999999999999999999998653111 00 011358999999999999999999999
Q ss_pred HhhHhcccchHHHHHHHHHH---cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 208 FVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 208 ~~~aa~l~~~~~tA~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++++.+++.+.+||+++.. .++++|++|+|+|++|++|++++|+|+.+|++++
T Consensus 162 ~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi 218 (398)
T TIGR01751 162 WEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV 218 (398)
T ss_pred HHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999853 6789999999999889999999999999999864
No 56
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.93 E-value=1.8e-24 Score=193.84 Aligned_cols=171 Identities=30% Similarity=0.366 Sum_probs=145.3
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||++++.++..+.++++ +.+.|.++++||+|++.++++|++|+..+.|..+.. ..+|.++|||++|+|+++ +++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~--~~~~ 76 (325)
T cd05280 1 FKALVVEEQDGGVSLFLR-TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT-RNYPHTPGIDAAGTVVSS--DDPR 76 (325)
T ss_pred CceEEEcccCCCCcceEE-eCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCC-CCCCCccCcccEEEEEEe--CCCC
Confidence 799999999876668888 889999999999999999999999999988865432 345789999999999999 4668
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH---cCCC-CCCEEEEE
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFS-AGKSILVL 239 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~---~~~~-~g~~VlI~ 239 (262)
|++||+|++.... .+....|+|++|+.++.+.++++|+++++++++.+++.+.++|+++.. .++. .+++|+|+
T Consensus 77 ~~~Gd~V~~~~~~---~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~ 153 (325)
T cd05280 77 FREGDEVLVTGYD---LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVT 153 (325)
T ss_pred CCCCCEEEEcccc---cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 9999999985311 111236899999999999999999999999999999999999999854 2345 45799999
Q ss_pred cCchHHHHHHHHHHHHcCCccC
Q 024775 240 NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++|++++|+||.+|++|+
T Consensus 154 g~~g~vg~~~~~~a~~~g~~v~ 175 (325)
T cd05280 154 GATGGVGSIAVAILAKLGYTVV 175 (325)
T ss_pred CCccHHHHHHHHHHHHcCCEEE
Confidence 9889999999999999999875
No 57
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=9.1e-25 Score=200.07 Aligned_cols=169 Identities=30% Similarity=0.362 Sum_probs=130.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCC-CCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT-VPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~-~~G~e~vG~Vv~vG~~v~ 162 (262)
|+++++...+... +++ +.+.|.+.++||+|||.++|||++|++.+++..+.. +.+. ++|||++|+|+++| .++
T Consensus 1 m~a~~~~~~~~~~--~~~-~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~--~~~~~i~GHE~~G~V~evG-~~~ 74 (350)
T COG1063 1 MKAAVVYVGGGDV--RLE-EPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV--PPGDIILGHEFVGEVVEVG-VVR 74 (350)
T ss_pred CceeEEEecCCcc--ccc-cCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC--CCCCcccCccceEEEEEec-ccc
Confidence 5666666655432 233 666667889999999999999999999999976543 3334 99999999999999 778
Q ss_pred CCCCCCEEEEecCccc-------------cC-----C-----CCCCCceeeEEEecCCCeE-ECCCCCCHhhHhcccchH
Q 024775 163 EFKEGDEVYGDINEKA-------------LE-----G-----PKQFGSLAEYTAVEERLLA-PKPKNLDFVQAAGLPLAI 218 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~-------------~~-----~-----~~~~G~~ae~~~v~~~~~~-~lP~~~~~~~aa~l~~~~ 218 (262)
.+++||+|+..+...| +. + ...+|+|+||+.+|.+.++ ++|+++ ..+.+++...+
T Consensus 75 ~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epl 153 (350)
T COG1063 75 GFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPL 153 (350)
T ss_pred CCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChh
Confidence 8999999987643211 11 1 1146999999999975544 558887 56777788888
Q ss_pred HHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 219 ETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 219 ~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.++|++. .+...+++++|+|+| +|++|++++++||.+|+..
T Consensus 154 a~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~ 195 (350)
T COG1063 154 ATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASV 195 (350)
T ss_pred hhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCce
Confidence 8998884 455666666999999 9999999999999999853
No 58
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=1.7e-24 Score=194.82 Aligned_cols=165 Identities=26% Similarity=0.348 Sum_probs=147.2
Q ss_pred ceeEEEEcccCC--cceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 83 EMKAWLYGEYGG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 83 ~~ka~v~~~~g~--~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
.||||++++++. .+.++++ +.+.|.+.++||+|||.++++|+.|++...|.++.. ..+|.++|+|++|+|+.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~ 78 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIV-DVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEG 78 (329)
T ss_pred CceEEEeccCCCCcccCceEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCC
Confidence 399999999887 6778888 888899999999999999999999999888765432 356789999999999999999
Q ss_pred CCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEE
Q 024775 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVL 239 (262)
Q Consensus 161 v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~ 239 (262)
+..+++||+|+++. .|+|++|+.++...++++|++ +.+++.++.++.+||+++.+ .++++|++|+|+
T Consensus 79 v~~~~~Gd~V~~~~----------~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ 146 (329)
T cd08250 79 VTDFKVGDAVATMS----------FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVT 146 (329)
T ss_pred CCCCCCCCEEEEec----------CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 99999999999864 589999999999999999987 34677789999999999965 689999999999
Q ss_pred cCchHHHHHHHHHHHHcCCccC
Q 024775 240 NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|.+|++++|+|+..|++|+
T Consensus 147 ga~g~ig~~~~~~a~~~g~~v~ 168 (329)
T cd08250 147 AAAGGTGQFAVQLAKLAGCHVI 168 (329)
T ss_pred eCccHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999865
No 59
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.93 E-value=2.6e-24 Score=198.32 Aligned_cols=170 Identities=24% Similarity=0.298 Sum_probs=142.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++.+++. ++++ ++++|.+ +++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++.
T Consensus 1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~---~~~p~~~g~e~~G~V~~vG~~v~ 73 (375)
T cd08282 1 MKAVVYGGPGN---VAVE-DVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG---AEPGLVLGHEAMGEVEEVGSAVE 73 (375)
T ss_pred CceEEEecCCc---eeEE-eCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC---CCCCceeccccEEEEEEeCCCCC
Confidence 68999977654 7777 8899986 799999999999999999999988764 34578999999999999999999
Q ss_pred CCCCCCEEEEecCccccC----------------------------CCCCCCceeeEEEecCC--CeEECCCCCCHh---
Q 024775 163 EFKEGDEVYGDINEKALE----------------------------GPKQFGSLAEYTAVEER--LLAPKPKNLDFV--- 209 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~----------------------------~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~--- 209 (262)
.+++||+|++.....|.. .....|+|++|+.++.. .++++|++++++
T Consensus 74 ~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~ 153 (375)
T cd08282 74 SLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKD 153 (375)
T ss_pred cCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhh
Confidence 999999998743211110 01124899999999975 899999999988
Q ss_pred hHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 210 ~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
+++.++..+.+||+++..+++++|++|+|.| +|++|++++|+|+.+|+ +|+
T Consensus 154 ~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi 205 (375)
T cd08282 154 DYLMLSDIFPTGWHGLELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVY 205 (375)
T ss_pred heeeecchHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 5677788899999999778999999999976 79999999999999997 553
No 60
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.93 E-value=2.9e-24 Score=194.59 Aligned_cols=175 Identities=31% Similarity=0.418 Sum_probs=149.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++.+++ ...++++ +.+.|.+.++||+||+.+.++|+.|...+.+.++.. .+.|..+|+|++|+|+++|+++..
T Consensus 1 m~a~~~~~~~-~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~vG~~~~~ 77 (341)
T cd08297 1 MKAAVVEEFG-EKPYEVK-DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK-PKLPLIGGHEGAGVVVAVGPGVSG 77 (341)
T ss_pred CceEEeeccC-CCCceEE-EeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC-CCCCccCCcccceEEEEeCCCCCC
Confidence 7999998887 3347777 888899999999999999999999999888766432 345678999999999999999999
Q ss_pred CCCCCEEEEecC-----cc--------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDIN-----EK--------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~-----~~--------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
+++||+|+.... .. ...+....|++++|+.++++.++++|+++++.+++.++..+.|||++
T Consensus 78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~ 157 (341)
T cd08297 78 LKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKA 157 (341)
T ss_pred CCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHH
Confidence 999999987520 00 00111235899999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+...++++|++|||+|+.+++|++++++|+.+|++|+
T Consensus 158 ~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~ 194 (341)
T cd08297 158 LKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVI 194 (341)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 9878999999999999888899999999999999875
No 61
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.93 E-value=2e-24 Score=195.83 Aligned_cols=170 Identities=26% Similarity=0.320 Sum_probs=145.9
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++.+++. +++. +.+.|.+ .++||+||+.++++|+.|++.+.|.++. .++|.++|+|++|+|+++|+++.
T Consensus 1 ~ka~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v~ 74 (347)
T cd05278 1 MKALVYLGPGK---IGLE-EVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG--AKHGMILGHEFVGEVVEVGSDVK 74 (347)
T ss_pred CceEEEecCCc---eEEE-EcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC--CCCCceeccceEEEEEEECCCcc
Confidence 68999988765 6666 8888889 8999999999999999999998887654 45578999999999999999999
Q ss_pred CCCCCCEEEEecCcccc---------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHH
Q 024775 163 EFKEGDEVYGDINEKAL---------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIE 219 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~---------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~ 219 (262)
++++||+|++.+...|. .+....|+|++|++++.+ .++++|+++++++++.++..+.
T Consensus 75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ 154 (347)
T cd05278 75 RLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILP 154 (347)
T ss_pred ccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhh
Confidence 99999999985322110 011235899999999987 8999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
|||+++...++++|++|+|.| +|++|++++|+||.+|. ++
T Consensus 155 ta~~~~~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v 195 (347)
T cd05278 155 TGFHGAELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARI 195 (347)
T ss_pred heeehhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence 999999778899999999976 79999999999999996 54
No 62
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.93 E-value=2.6e-24 Score=199.19 Aligned_cols=169 Identities=24% Similarity=0.277 Sum_probs=145.0
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
|||+++.++++ ++++ +.+.|.+ +++||+||+.+++||++|+..+.|.++. .++|.++|||++|+|+++|+++.
T Consensus 1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~ 74 (386)
T cd08283 1 MKALVWHGKGD---VRVE-EVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG--MKKGDILGHEFMGVVEEVGPEVR 74 (386)
T ss_pred CeeEEEecCCC---ceEE-eCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC--CCCCccccccceEEEEEeCCCCC
Confidence 78999986644 6777 8888888 4999999999999999999999887654 35678999999999999999999
Q ss_pred CCCCCCEEEEecCcccc---------------------------------CC-----CCCCCceeeEEEecCC--CeEEC
Q 024775 163 EFKEGDEVYGDINEKAL---------------------------------EG-----PKQFGSLAEYTAVEER--LLAPK 202 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~---------------------------------~~-----~~~~G~~ae~~~v~~~--~~~~l 202 (262)
.+++||+|++.+...|. .+ ....|++++|++++.+ .++++
T Consensus 75 ~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l 154 (386)
T cd08283 75 NLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKI 154 (386)
T ss_pred CCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEEC
Confidence 99999999886421100 00 0125899999999987 89999
Q ss_pred CCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 203 P~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
|+++++++++.++..+.+||++++..++++|++|+|+| +|++|++++++|+.+|+.
T Consensus 155 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~ 210 (386)
T cd08283 155 PDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAE 210 (386)
T ss_pred CCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999778899999999996 799999999999999974
No 63
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.93 E-value=3.5e-24 Score=192.98 Aligned_cols=174 Identities=30% Similarity=0.419 Sum_probs=148.0
Q ss_pred eeEEEEcccCCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775 84 MKAWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161 (262)
Q Consensus 84 ~ka~v~~~~g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v 161 (262)
||+|++.+.+.+ +.+++. +.+.|.+.++||+||+.++++|++|++.+.|..+. ..+|.++|||++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v 77 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLT-EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP--PKLPLIPGHEIVGRVEAVGPGV 77 (329)
T ss_pred CeEEEEecCCCCCCCCceEE-eccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC--CCCCccccccccEEEEEECCCC
Confidence 789999888842 346676 77778899999999999999999999998886543 3457899999999999999999
Q ss_pred CCCCCCCEEEEecCc----c---------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHH
Q 024775 162 KEFKEGDEVYGDINE----K---------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~----~---------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~ 222 (262)
.++++||+|++.... . ...+....|+|++|+.++.+.++++|+++++.+++.+++.+.|||
T Consensus 78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~ 157 (329)
T cd08298 78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGY 157 (329)
T ss_pred CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHH
Confidence 999999999863110 0 011222368999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++++.+++++|++|+|+| +|++|++++++|+.+|++|+
T Consensus 158 ~~~~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~ 195 (329)
T cd08298 158 RALKLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVF 195 (329)
T ss_pred HHHHhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence 999778999999999997 89999999999999999875
No 64
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=4e-24 Score=192.22 Aligned_cols=167 Identities=31% Similarity=0.512 Sum_probs=151.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
.|+|++...+.++.+++. +.+.|.+.++||+|++.++++|+.|+..+.|..+.. ..+|.++|+|++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~ 78 (331)
T cd08273 1 NREVVVTRRGGPEVLKVV-EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ-PPLPFTPGYDLVGRVDALGSGVTG 78 (331)
T ss_pred CeeEEEccCCCcccEEEe-ccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC-CCCCcccccceEEEEEEeCCCCcc
Confidence 489999999888778888 889999999999999999999999999888765432 346789999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
|++||+|+++.. .|+|++|+.++.+.++++|+++++++++.++..+.+||+++.+ ..+++|++|+|+|++
T Consensus 79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~ 149 (331)
T cd08273 79 FEVGDRVAALTR---------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGAS 149 (331)
T ss_pred CCCCCEEEEeCC---------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 999999999752 4899999999999999999999999999999999999999965 689999999999989
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++|+.+|++|+
T Consensus 150 g~ig~~~~~~a~~~g~~v~ 168 (331)
T cd08273 150 GGVGQALLELALLAGAEVY 168 (331)
T ss_pred cHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999875
No 65
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.93 E-value=2.8e-24 Score=194.75 Aligned_cols=170 Identities=25% Similarity=0.263 Sum_probs=141.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC---------CCCCCCCCCCCccEEEEE
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK---------ATDSPLPTVPGYDVAGVV 154 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~---------~~~~~~p~~~G~e~vG~V 154 (262)
|||+++... .++++ +.+.|++.++||+||+.++++|+.|++...|... .....+|.++|+|++|+|
T Consensus 1 m~a~~~~~~----~~~~~-~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 75 (341)
T cd08262 1 MRAAVFRDG----PLVVR-DVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV 75 (341)
T ss_pred CceEEEeCC----ceEEE-ecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence 789998765 37777 8899999999999999999999999998877321 011234788999999999
Q ss_pred EEeCCCCCC-CCCCCEEEEecCccccCCC--------CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 155 VKVGTQVKE-FKEGDEVYGDINEKALEGP--------KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 155 v~vG~~v~~-~~~Gd~V~~~~~~~~~~~~--------~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++|++++. |++||+|+++....|.... ...|+|++|+.++.+.++++|+++++++++ ++..+.+||+++
T Consensus 76 ~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~ 154 (341)
T cd08262 76 VDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV 154 (341)
T ss_pred EEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence 999999987 9999999987432221111 136899999999999999999999998776 667888999998
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
...++++|++|+|+| +|++|.+++|+|+.+|+++
T Consensus 155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~ 188 (341)
T cd08262 155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGP 188 (341)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence 778999999999997 6999999999999999873
No 66
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.92 E-value=5.6e-24 Score=194.51 Aligned_cols=167 Identities=23% Similarity=0.245 Sum_probs=135.5
Q ss_pred ccceeEEEEcccC----CcceEEEEee--ecCC-CCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCc--cEE
Q 024775 81 PSEMKAWLYGEYG----GVDVLKFDEK--VTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY--DVA 151 (262)
Q Consensus 81 p~~~ka~v~~~~g----~~~~l~~~~~--~~~p-~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~--e~v 151 (262)
+.++|.|++.++- .++.|++++. .+.| ++++|||||||.++++|+.|...+.+.... ..+|+++|+ |++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~--~~~p~~~G~~~~~~ 83 (348)
T PLN03154 6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS--YLPPFVPGQRIEGF 83 (348)
T ss_pred cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC--CCCCcCCCCeeEee
Confidence 4457889985543 2356888842 3555 357999999999999999998755432221 235789997 889
Q ss_pred EEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCC--eEE--CCCCCCHh-hHhcccchHHHHHHHHH
Q 024775 152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAP--KPKNLDFV-QAAGLPLAIETAYEGLE 226 (262)
Q Consensus 152 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~--~~~--lP~~~~~~-~aa~l~~~~~tA~~al~ 226 (262)
|+|+.+|++++.|++||+|++ .|+|+||++++... +.+ +|++++++ +++.+++++.|||+++.
T Consensus 84 G~v~~vg~~v~~~~~Gd~V~~------------~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~ 151 (348)
T PLN03154 84 GVSKVVDSDDPNFKPGDLISG------------ITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFY 151 (348)
T ss_pred EEEEEEecCCCCCCCCCEEEe------------cCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999986 46899999998753 544 48999886 67888999999999995
Q ss_pred -HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 227 -RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 227 -~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..++++|++|||+|++|++|++++|+||.+|++|+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi 187 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVV 187 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 57899999999999889999999999999999864
No 67
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.92 E-value=1.3e-24 Score=197.36 Aligned_cols=172 Identities=37% Similarity=0.502 Sum_probs=147.3
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||++++.++ +..++++ +.+.|.++++||+|++.++++|++|+..+.+.. ....|.++|+|++|+|+.+|++++.
T Consensus 1 m~a~~~~~~~-~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~~v~~ 75 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVV-DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF---IPSYPAILGCDFAGTVVEVGSGVTR 75 (339)
T ss_pred CceEEeccCC-CCccccc-CCCCCCCCCCEEEEEEEEEEcCchheeeeeccc---ccCCCceeeeeeeEEEEEeCCCcCc
Confidence 7899999886 5557777 889999999999999999999999988765543 1234678999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCC----------CC
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGF----------SA 232 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~----------~~ 232 (262)
+++||+|+++....+ .+....|+|++|++++.+.++++|+++++++++.+++.+.+||+++.+ .++ ++
T Consensus 76 ~~~Gd~V~~~~~~~~-~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~ 154 (339)
T cd08249 76 FKVGDRVAGFVHGGN-PNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASK 154 (339)
T ss_pred CCCCCEEEEEecccc-CCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCC
Confidence 999999998763211 122346899999999999999999999999999999999999999854 433 79
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|+|+|++|.+|++++++|+.+|++|+
T Consensus 155 ~~~vlI~ga~g~vg~~~~~~a~~~G~~v~ 183 (339)
T cd08249 155 GKPVLIWGGSSSVGTLAIQLAKLAGYKVI 183 (339)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999875
No 68
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.92 E-value=3.2e-24 Score=194.65 Aligned_cols=171 Identities=42% Similarity=0.664 Sum_probs=146.9
Q ss_pred eeEEEEcccCCc-ceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCC-------------CCCCCCCCCCc
Q 024775 84 MKAWLYGEYGGV-DVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKA-------------TDSPLPTVPGY 148 (262)
Q Consensus 84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~-------------~~~~~p~~~G~ 148 (262)
|||+++.+++++ +.++++ +.+.|.|. ++||+|||.++++|++|+....|.... ....+|.++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~ 79 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR 79 (350)
T ss_pred CceEEecccCCCcceeeec-ccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence 799999988875 346777 88999994 999999999999999999988774210 01345789999
Q ss_pred cEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-
Q 024775 149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER- 227 (262)
Q Consensus 149 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~- 227 (262)
|++|+|+++|+++..+++||+|+++... ...|+|++|+.++.+.++++|+++++++++.+++.+.++|+++.+
T Consensus 80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~ 153 (350)
T cd08248 80 DCSGVVVDIGSGVKSFEIGDEVWGAVPP------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNV 153 (350)
T ss_pred eeEEEEEecCCCcccCCCCCEEEEecCC------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHh
Confidence 9999999999999999999999986521 125899999999999999999999999999999999999999865
Q ss_pred cCCC----CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 228 TGFS----AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 228 ~~~~----~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+. +|++|+|+|++|++|++++++|+.+|++|+
T Consensus 154 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~ 191 (350)
T cd08248 154 GGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVT 191 (350)
T ss_pred ccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 5554 499999999999999999999999999875
No 69
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.92 E-value=4.9e-24 Score=189.98 Aligned_cols=170 Identities=29% Similarity=0.400 Sum_probs=147.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++...+....+++. +.+.|.+.++||+||++++++|+.|+....+..+. ...|.++|+|++|+|+++|. ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~--~~ 75 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS--VKFPRVLGIEAVGEVEEAPG--GT 75 (320)
T ss_pred CeEEEEcCCCCccceEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCccccceeEEEEEEecC--CC
Confidence 789999887776667777 77778899999999999999999999988876542 34568899999999999995 57
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
+++||+|+++.... +....|+|++|+.++...++++|+++++++++.++.++.+||+++.. .++++|++|+|+|++
T Consensus 76 ~~~Gd~V~~~~~~~---~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~ 152 (320)
T cd08243 76 FTPGQRVATAMGGM---GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT 152 (320)
T ss_pred CCCCCEEEEecCCC---CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 99999999875311 11235899999999999999999999999999999999999999965 579999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++|+|+.+|++|+
T Consensus 153 g~~g~~~~~~a~~~g~~v~ 171 (320)
T cd08243 153 SSVGLAALKLAKALGATVT 171 (320)
T ss_pred ChHHHHHHHHHHHcCCEEE
Confidence 9999999999999999875
No 70
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.92 E-value=7.9e-24 Score=191.76 Aligned_cols=170 Identities=27% Similarity=0.387 Sum_probs=143.9
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++++++. ++++ +.+.|.+.+++|+||++++++|+.|+..+.+.++ +...|.++|+|++|+|+++|++++.
T Consensus 1 ~~~~~~~~~~~---~~~~-~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~--~~~~~~~~g~~~~G~V~~~G~~v~~ 74 (343)
T cd08235 1 MKAAVLHGPND---VRLE-EVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT--DLKPPRILGHEIAGEIVEVGDGVTG 74 (343)
T ss_pred CeEEEEecCCc---eEEE-EccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc--cCCCCcccccceEEEEEeeCCCCCC
Confidence 68999988764 7777 8888999999999999999999999998887653 1334678999999999999999999
Q ss_pred CCCCCEEEEecCcccc-------------C-----CCCCCCceeeEEEecCCC-----eEECCCCCCHhhHhcccchHHH
Q 024775 164 FKEGDEVYGDINEKAL-------------E-----GPKQFGSLAEYTAVEERL-----LAPKPKNLDFVQAAGLPLAIET 220 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~-------------~-----~~~~~G~~ae~~~v~~~~-----~~~lP~~~~~~~aa~l~~~~~t 220 (262)
|++||+|+++.+..+. . +....|+|++|+.++.+. ++++|+++++.+++.+ ..+.+
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~ 153 (343)
T cd08235 75 FKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLAC 153 (343)
T ss_pred CCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHH
Confidence 9999999986421110 0 011358999999999988 9999999999998765 78889
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
||+++...++++|++|+|+| +|++|++++|+|+.+|++ |+
T Consensus 154 a~~~l~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~ 194 (343)
T cd08235 154 CINAQRKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVI 194 (343)
T ss_pred HHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 99999877899999999997 799999999999999998 53
No 71
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.92 E-value=6.2e-24 Score=193.51 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=141.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-------CCCCCCCCCccEEEEEEE
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-------DSPLPTVPGYDVAGVVVK 156 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-------~~~~p~~~G~e~vG~Vv~ 156 (262)
|||+++.+++. ++++ +.+.|++.++||+||+.++++|+.|++.+.|..... ..++|.++|||++|+|++
T Consensus 1 mka~~~~~~~~---~~~~-~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~ 76 (350)
T cd08256 1 MRAVVCHGPQD---YRLE-EVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE 76 (350)
T ss_pred CeeEEEecCCc---eEEE-ECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence 78999987765 7777 889999999999999999999999999887753110 014577899999999999
Q ss_pred eCCCCC--CCCCCCEEEEecCcccc------CC------------C--CCCCceeeEEEecCC-CeEECCCCCCHhhHhc
Q 024775 157 VGTQVK--EFKEGDEVYGDINEKAL------EG------------P--KQFGSLAEYTAVEER-LLAPKPKNLDFVQAAG 213 (262)
Q Consensus 157 vG~~v~--~~~~Gd~V~~~~~~~~~------~~------------~--~~~G~~ae~~~v~~~-~~~~lP~~~~~~~aa~ 213 (262)
+|++++ .|++||+|++.....|. .+ . ...|+|++|+.++++ .++++|+++++++++.
T Consensus 77 vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~ 156 (350)
T cd08256 77 LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL 156 (350)
T ss_pred eCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence 999999 89999999874221110 00 1 135899999999987 5789999999999988
Q ss_pred ccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 214 l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+ ..+.++|++++..++++|++|+|.| +|++|++++++|+.+|+++
T Consensus 157 ~-~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~ 201 (350)
T cd08256 157 I-EPLACALHAVDRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKK 201 (350)
T ss_pred h-hHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence 8 8889999999778999999999955 8999999999999999864
No 72
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.92 E-value=6.3e-24 Score=188.33 Aligned_cols=167 Identities=37% Similarity=0.534 Sum_probs=149.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++.+.+.+..+++. +.+.|.+.+|||+||+.++++|+.|+....+.++. ...+|.++|||++|+|+++|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vg~~~~~ 78 (323)
T cd05276 1 MKAIVIKEPGGPEVLELG-EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP-PPGASDILGLEVAGVVVAVGPGVTG 78 (323)
T ss_pred CeEEEEecCCCcccceEE-ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC-CCCCCCcccceeEEEEEeeCCCCCC
Confidence 799999998877678787 77777889999999999999999999988775532 2345789999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
+++||+|+++.. .|+|++|+.++...++++|+++++.+++.++..+.++|+++.+ ..+.+|++|+|+|++
T Consensus 79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~ 149 (323)
T cd05276 79 WKVGDRVCALLA---------GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGA 149 (323)
T ss_pred CCCCCEEEEecC---------CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence 999999998752 5899999999999999999999999999999999999999864 689999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++++.+|++|+
T Consensus 150 ~~ig~~~~~~~~~~g~~v~ 168 (323)
T cd05276 150 SGVGTAAIQLAKALGARVI 168 (323)
T ss_pred ChHHHHHHHHHHHcCCEEE
Confidence 9999999999999999864
No 73
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.92 E-value=8.7e-24 Score=189.69 Aligned_cols=171 Identities=27% Similarity=0.334 Sum_probs=144.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||+++++|.++.++++ +.+.|.++++||+|++.++++|+.|.....|.... ...+|.++|||++|+|++ +++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~~ 76 (324)
T cd08288 1 FKALVLEKDDGGTSAELR-ELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI-VRTFPLVPGIDLAGTVVE--SSSPR 76 (324)
T ss_pred CeeEEEeccCCCcceEEE-ECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc-cCCCCCccccceEEEEEe--CCCCC
Confidence 899999998877778888 88999999999999999999999999988775421 123567899999999998 67778
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCC-CCCEEEEE
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFS-AGKSILVL 239 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~-~g~~VlI~ 239 (262)
+++||+|+++... .+....|+|++|+.++.+.++++|+++++++++.++..+++++.++. ..+.. +|++|+|+
T Consensus 77 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ 153 (324)
T cd08288 77 FKPGDRVVLTGWG---VGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVT 153 (324)
T ss_pred CCCCCEEEECCcc---CCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEE
Confidence 9999999985310 01112689999999999999999999999999999999989987764 45555 67899999
Q ss_pred cCchHHHHHHHHHHHHcCCccC
Q 024775 240 NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++|++++|+|+.+|++|+
T Consensus 154 ga~g~vg~~~~~~A~~~G~~vi 175 (324)
T cd08288 154 GAAGGVGSVAVALLARLGYEVV 175 (324)
T ss_pred CCCcHHHHHHHHHHHHCCCeEE
Confidence 9899999999999999999875
No 74
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.92 E-value=6.4e-24 Score=195.00 Aligned_cols=169 Identities=29% Similarity=0.346 Sum_probs=143.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
+||+++.+.++. ++++ +.+.|.++++||+|++.++++|+.|++.+.+..+ ..+|.++|||++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~--~~~~-~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~---~~~~~i~g~e~~G~V~~vG~~v~~ 74 (365)
T cd05279 1 CKAAVLWEKGKP--LSIE-EIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGVTT 74 (365)
T ss_pred CceeEEecCCCC--cEEE-EeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC---CCCCcccccceeEEEEEeCCCccc
Confidence 467888877654 6676 8899999999999999999999999999888654 345689999999999999999999
Q ss_pred CCCCCEEEEecCccc------cC---------------------------------CCCCCCceeeEEEecCCCeEECCC
Q 024775 164 FKEGDEVYGDINEKA------LE---------------------------------GPKQFGSLAEYTAVEERLLAPKPK 204 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------~~---------------------------------~~~~~G~~ae~~~v~~~~~~~lP~ 204 (262)
+++||+|++.....| .. +....|+|++|+.++++.++++|+
T Consensus 75 ~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~ 154 (365)
T cd05279 75 LKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDP 154 (365)
T ss_pred CCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCC
Confidence 999999998642110 00 011247899999999999999999
Q ss_pred CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++++++++.+..++.+||+++. .+++++|++|||+| +|++|++++|+|+.+|++
T Consensus 155 ~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~ 209 (365)
T cd05279 155 DAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGAS 209 (365)
T ss_pred CCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999875 57899999999996 799999999999999986
No 75
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.92 E-value=8.4e-24 Score=191.64 Aligned_cols=170 Identities=28% Similarity=0.360 Sum_probs=144.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++..++. ++++ +.++|++. ++||+|++.++++|+.|+....|.++ ..+|.++|+|++|+|+++|++++
T Consensus 1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~ 73 (344)
T cd08284 1 MKAVVFKGPGD---VRVE-EVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STPGFVLGHEFVGEVVEVGPEVR 73 (344)
T ss_pred CeeEEEecCCC---ceEE-eccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCCcccccceEEEEEeeCCCcc
Confidence 78999987643 7777 88999985 99999999999999999998887654 33467899999999999999999
Q ss_pred CCCCCCEEEEecCcccc----------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchH
Q 024775 163 EFKEGDEVYGDINEKAL----------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAI 218 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~----------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~ 218 (262)
++++||+|++.....|. ......|+|++|+.++.+ .++++|+++++++++.++.++
T Consensus 74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~ 153 (344)
T cd08284 74 TLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDIL 153 (344)
T ss_pred ccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCch
Confidence 99999999986421110 011125899999999864 999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
.|||+++...++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 154 ~ta~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~ 196 (344)
T cd08284 154 PTGYFGAKRAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVF 196 (344)
T ss_pred HHHHhhhHhcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEE
Confidence 9999999878899999999997 89999999999999996 554
No 76
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.92 E-value=8.2e-24 Score=190.02 Aligned_cols=171 Identities=29% Similarity=0.357 Sum_probs=142.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||++.+.++.+.++++ +.+.|.+.++||+||+.++++|++|.....+... ....+|.++|||++|+|+++| +..
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~~~--~~~ 76 (326)
T cd08289 1 FQALVVEKDEDDVSVSVK-NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK-IVKRYPFIPGIDLAGTVVESN--DPR 76 (326)
T ss_pred CeeEEEeccCCcceeEEE-EccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc-ccCCCCcCcccceeEEEEEcC--CCC
Confidence 799999999887778888 8899999999999999999999999876543211 113457899999999999964 567
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH---cCCC-CCCEEEEE
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFS-AGKSILVL 239 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~---~~~~-~g~~VlI~ 239 (262)
|++||+|++.... .+....|+|++|+.++++.++++|+++++++++.+++.+.|||.++.. ..+. .+++|+|+
T Consensus 77 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~ 153 (326)
T cd08289 77 FKPGDEVIVTSYD---LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVT 153 (326)
T ss_pred CCCCCEEEEcccc---cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 9999999986531 112246999999999999999999999999999999999999998853 3334 57899999
Q ss_pred cCchHHHHHHHHHHHHcCCccC
Q 024775 240 NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++|++++|+|+.+|++|+
T Consensus 154 g~~g~vg~~~~~~a~~~g~~v~ 175 (326)
T cd08289 154 GATGGVGSLAVSILAKLGYEVV 175 (326)
T ss_pred cCCchHHHHHHHHHHHCCCeEE
Confidence 9889999999999999999875
No 77
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.92 E-value=6.4e-24 Score=191.55 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=126.6
Q ss_pred CCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEE
Q 024775 93 GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG 172 (262)
Q Consensus 93 g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~ 172 (262)
..+++|+++ +.+.|+|++|||||||.|+++|+.|+. |..+. ...|.++|.|++|+|+++|+ .|++||+|++
T Consensus 14 ~~~~~l~~~-~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~--~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~ 84 (325)
T TIGR02825 14 PTDSDFELK-TVELPPLNNGEVLLEALFLSVDPYMRV---AAKRL--KEGDTMMGQQVARVVESKNV---ALPKGTIVLA 84 (325)
T ss_pred CCCCceEEE-eccCCCCCCCcEEEEEEEEecCHHHhc---ccCcC--CCCCcEecceEEEEEEeCCC---CCCCCCEEEE
Confidence 445778888 899999999999999999999997643 33221 23468999999999999874 5999999997
Q ss_pred ecCccccCCCCCCCceeeEEEecCCCeEEC----CCCCCHhhH-hcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHH
Q 024775 173 DINEKALEGPKQFGSLAEYTAVEERLLAPK----PKNLDFVQA-AGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVG 246 (262)
Q Consensus 173 ~~~~~~~~~~~~~G~~ae~~~v~~~~~~~l----P~~~~~~~a-a~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG 246 (262)
+ ++|++|++++.+.+.++ |++++++++ +.+++++.|||+++ +..++++|++|||+|++|++|
T Consensus 85 ~------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG 152 (325)
T TIGR02825 85 S------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVG 152 (325)
T ss_pred e------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHH
Confidence 3 46899999999888777 899999987 67889999999998 468899999999999999999
Q ss_pred HHHHHHHHHcCCccC
Q 024775 247 SLVIQVCYYYLEFFF 261 (262)
Q Consensus 247 ~~aiqlAk~~Ga~V~ 261 (262)
++++|+||.+|++|+
T Consensus 153 ~~aiqlAk~~G~~Vi 167 (325)
T TIGR02825 153 SVVGQIAKLKGCKVV 167 (325)
T ss_pred HHHHHHHHHcCCEEE
Confidence 999999999999875
No 78
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.92 E-value=9.5e-24 Score=193.55 Aligned_cols=170 Identities=28% Similarity=0.345 Sum_probs=145.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||++.+++.. +++. +.+.|.++++||+|++.++++|+.|+..+.|.++ ..+|.++|+|++|+|+++|+++..
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~~ 74 (363)
T cd08279 1 MRAAVLHEVGKP--LEIE-EVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP---APLPAVLGHEGAGVVEEVGPGVTG 74 (363)
T ss_pred CeEEEEecCCCC--ceEE-EeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC---CCCCccccccceEEEEEeCCCccc
Confidence 799999988754 6666 8899999999999999999999999998888654 345779999999999999999999
Q ss_pred CCCCCEEEEecCccc-------------cCC-------------------------CCCCCceeeEEEecCCCeEECCCC
Q 024775 164 FKEGDEVYGDINEKA-------------LEG-------------------------PKQFGSLAEYTAVEERLLAPKPKN 205 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~-------------~~~-------------------------~~~~G~~ae~~~v~~~~~~~lP~~ 205 (262)
|++||+|++.....| +.. ....|+|++|+.++++.++++|++
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~ 154 (363)
T cd08279 75 VKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDD 154 (363)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCC
Confidence 999999998532111 000 013589999999999999999999
Q ss_pred CCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-c
Q 024775 206 LDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-F 260 (262)
Q Consensus 206 ~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V 260 (262)
+++++++.+++.+.+||.++. ..++++|++|+|+| +|++|++++++|+.+|++ |
T Consensus 155 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~V 210 (363)
T cd08279 155 IPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRI 210 (363)
T ss_pred CChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999985 57899999999996 799999999999999996 5
No 79
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.92 E-value=8.4e-24 Score=192.02 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=144.3
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||++++.+++. ++++ +.+.|++ .++||+||+.++++|+.|+..+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~v~ 74 (345)
T cd08286 1 MKALVYHGPGK---ISWE-DRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT--VTPGRILGHEGVGVVEEVGSAVT 74 (345)
T ss_pred CceEEEecCCc---eeEE-ecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC--CCCCceecccceEEEEEeccCcc
Confidence 78999988775 7776 8888886 7999999999999999999999887653 34478999999999999999999
Q ss_pred CCCCCCEEEEecCcccc-------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHHH
Q 024775 163 EFKEGDEVYGDINEKAL-------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETA 221 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~-------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~tA 221 (262)
.+++||+|++.....+. .+....|+|++|+.++.. .++++|++++..+++.+++.+.+|
T Consensus 75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta 154 (345)
T cd08286 75 NFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTG 154 (345)
T ss_pred ccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHH
Confidence 99999999886421110 011224899999999987 899999999999999999999999
Q ss_pred HHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775 222 YEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL-EFFF 261 (262)
Q Consensus 222 ~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V~ 261 (262)
|+++ ...++++|++|+|+| +|++|.+++|+||.+| .+|+
T Consensus 155 ~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~ 195 (345)
T cd08286 155 YECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKII 195 (345)
T ss_pred HHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 9976 457899999999987 6999999999999999 5553
No 80
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.92 E-value=8.9e-24 Score=191.66 Aligned_cols=171 Identities=27% Similarity=0.364 Sum_probs=145.6
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
|+|+.++.+ +.|+++ +.+.|.+.+|||+||+.++++|++|.+.+.|.+.. .++|.++|||++|+|+++|+++++|
T Consensus 1 ~~~~~~~~~--~~~~~~-~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~V~~vG~~v~~~ 75 (337)
T cd05283 1 KGYAARDAS--GKLEPF-TFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP--TKYPLVPGHEIVGIVVAVGSKVTKF 75 (337)
T ss_pred CceEEecCC--CCceEE-eccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC--CCCCcccCcceeeEEEEECCCCccc
Confidence 567777776 347888 88999999999999999999999999999887632 4568899999999999999999999
Q ss_pred CCCCEEEEec-Ccc---c----------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchH
Q 024775 165 KEGDEVYGDI-NEK---A----------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI 218 (262)
Q Consensus 165 ~~Gd~V~~~~-~~~---~----------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~ 218 (262)
++||+|+..+ ... | + .+....|+|++|+.++.+.++++|+++++++++.+.+.+
T Consensus 76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~ 155 (337)
T cd05283 76 KVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAG 155 (337)
T ss_pred CCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHH
Confidence 9999997421 000 0 0 011336899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+||+++++..+++|++|+|.| +|++|++++++|+.+|++++
T Consensus 156 ~ta~~~~~~~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~ 197 (337)
T cd05283 156 ITVYSPLKRNGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVT 197 (337)
T ss_pred HHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 9999999888899999999977 89999999999999999764
No 81
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.92 E-value=1.5e-23 Score=190.41 Aligned_cols=172 Identities=33% Similarity=0.459 Sum_probs=146.4
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||++.+++.+ +++. +.+.|.+.++||+||+.++++|+.|+....|..+. ..+|.++|+|++|+|+.+|+++..
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~~~~ 75 (345)
T cd08260 1 MRAAVYEEFGEP--LEIR-EVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD--VTLPHVPGHEFAGVVVEVGEDVSR 75 (345)
T ss_pred CeeEEEecCCCC--cEEE-EccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC--CCCCeeeccceeEEEEEECCCCcc
Confidence 799999888764 6676 88889999999999999999999999998886543 355789999999999999999999
Q ss_pred CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETAYE 223 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~tA~~ 223 (262)
|++||+|++.....| ..+....|+|++|+.++.. .++++|+++++++++.++..+.+||+
T Consensus 76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~ 155 (345)
T cd08260 76 WRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFR 155 (345)
T ss_pred CCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHH
Confidence 999999987211100 0112236899999999974 89999999999999999999999999
Q ss_pred HHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 224 GLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 224 al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++. ..++.+|++|+|+| +|++|++++|+|+.+|++|+
T Consensus 156 ~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi 193 (345)
T cd08260 156 ALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVI 193 (345)
T ss_pred HHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 985 57899999999999 89999999999999999875
No 82
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.92 E-value=1.1e-23 Score=189.90 Aligned_cols=169 Identities=40% Similarity=0.562 Sum_probs=147.0
Q ss_pred eeEEEEcccCCcc---eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775 84 MKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 84 ~ka~v~~~~g~~~---~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
||++++++++++. .+.++ +.+.|++.++||+|++.++++|++|++.+.+..+. .++|.++|||++|+|+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~ 77 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDI-ELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV--PGQPKILGWDASGVVEAVGSE 77 (336)
T ss_pred CceEEecCCCCCCcccceeEc-cCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC--CCCCcccccceEEEEEEcCCC
Confidence 6899999998765 46666 77888889999999999999999999988776542 345678999999999999999
Q ss_pred CCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCC-----CC
Q 024775 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSA-----GK 234 (262)
Q Consensus 161 v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~-----g~ 234 (262)
+..|++||+|+++.. ....|+|++|+.++...++++|+++++++++.+++.+.+||+++. ...+++ |+
T Consensus 78 v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~ 151 (336)
T cd08252 78 VTLFKVGDEVYYAGD------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGK 151 (336)
T ss_pred CCCCCCCCEEEEcCC------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCC
Confidence 999999999998532 013589999999999999999999999999999999999999984 477777 99
Q ss_pred EEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYL-EFFF 261 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~G-a~V~ 261 (262)
+|+|+|++|++|++++|+|+.+| ++|+
T Consensus 152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~ 179 (336)
T cd08252 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVI 179 (336)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999 8764
No 83
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.92 E-value=1.5e-23 Score=188.26 Aligned_cols=170 Identities=30% Similarity=0.385 Sum_probs=145.5
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
||++++..+.+++++++ +.+.|.+.++||+||+.++++|+.|++.+.|..+.. ...|.++|||++|+|+. .++..|
T Consensus 1 ~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~--~~~~~~ 76 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVE-TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVV-RSYPMIPGIDAAGTVVS--SEDPRF 76 (323)
T ss_pred CeEEEccCCCCcceeEe-ecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCC-CCCCccceeeeEEEEEe--cCCCCC
Confidence 68899888877788999 999999999999999999999999999988865321 34578899999999988 566789
Q ss_pred CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCC-EEEEEc
Q 024775 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-SILVLN 240 (262)
Q Consensus 165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~-~VlI~G 240 (262)
++||+|++.... .+....|++++|+.++.+.++++|+++++++++.++..+.+||.++. +..+.+|+ +|+|+|
T Consensus 77 ~~Gd~V~~~~~~---~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g 153 (323)
T TIGR02823 77 REGDEVIVTGYG---LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTG 153 (323)
T ss_pred CCCCEEEEccCC---CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEc
Confidence 999999986421 11223689999999999999999999999999999999999988874 34588998 999999
Q ss_pred CchHHHHHHHHHHHHcCCccC
Q 024775 241 GSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 241 a~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++|.+|++++|+|+.+|++++
T Consensus 154 ~~g~vg~~~~~la~~~G~~vi 174 (323)
T TIGR02823 154 ATGGVGSLAVAILSKLGYEVV 174 (323)
T ss_pred CCcHHHHHHHHHHHHcCCeEE
Confidence 889999999999999999864
No 84
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.92 E-value=1.5e-23 Score=188.90 Aligned_cols=174 Identities=32% Similarity=0.431 Sum_probs=148.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++..++++. +.+. +.+.|.+.++||+|++.++++|+.|.....|.++. ..++|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~-~~~~~~~~g~~~~G~v~~~G~~v~~ 77 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLE-EVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPT-LTKLPLTLGHEIAGTVVEVGAGVTN 77 (338)
T ss_pred CeeEEEecCCCCc-eEEe-ccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcc-cCCCCEeccccccEEEEEECCCCcc
Confidence 7999999988875 6666 78889999999999999999999999998887652 2445678999999999999999999
Q ss_pred CCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++||+|++..... ...+....|+|++|+.++...++++|+++++.+++.++..+.+||+++
T Consensus 78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l 157 (338)
T cd08254 78 FKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV 157 (338)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence 99999998721100 011222358999999999999999999999999999999999999998
Q ss_pred HH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.. ..++++++|||.| +|++|++++++|+.+|++|+
T Consensus 158 ~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~ 193 (338)
T cd08254 158 VRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVI 193 (338)
T ss_pred HhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 65 5799999999976 79999999999999999865
No 85
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.92 E-value=1.3e-23 Score=192.88 Aligned_cols=169 Identities=34% Similarity=0.484 Sum_probs=144.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++..++.. ++++ +.++|.+.++||+|++.++++|++|+....+.++ ..+|.++|||++|+|+.+|+++.+
T Consensus 1 ~~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~---~~~p~~~g~e~~G~v~~vG~~~~~ 74 (367)
T cd08263 1 MKAAVLKGPNPP--LTIE-EIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP---FPPPFVLGHEISGEVVEVGPNVEN 74 (367)
T ss_pred CeeEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC---CCCCcccccccceEEEEeCCCCCC
Confidence 799999988643 6676 8899999999999999999999999998887664 356789999999999999999988
Q ss_pred ---CCCCCEEEEecCccc-------------cCC---------------------------CCCCCceeeEEEecCCCeE
Q 024775 164 ---FKEGDEVYGDINEKA-------------LEG---------------------------PKQFGSLAEYTAVEERLLA 200 (262)
Q Consensus 164 ---~~~Gd~V~~~~~~~~-------------~~~---------------------------~~~~G~~ae~~~v~~~~~~ 200 (262)
|++||+|++.....+ +.+ ....|++++|+.++.+.++
T Consensus 75 ~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (367)
T cd08263 75 PYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALA 154 (367)
T ss_pred CCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEE
Confidence 999999998421100 000 0125899999999999999
Q ss_pred ECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 201 PKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 201 ~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++|+++++.+++.++..+.|||+++.. ..+++|++|+|+| +|++|++++++|+.+|++
T Consensus 155 ~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~ 213 (367)
T cd08263 155 PLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGAS 213 (367)
T ss_pred ECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999965 6779999999996 899999999999999987
No 86
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=1.5e-23 Score=186.84 Aligned_cols=172 Identities=44% Similarity=0.674 Sum_probs=150.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++.+.+.++.++++ +.+.|.+.++||+|++.++++|++|.....+.... ....|.++|+|++|+|+.+|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (326)
T cd08272 1 MKALVLESFGGPEVFELR-EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAA-RPPLPAILGCDVAGVVEAVGEGVTR 78 (326)
T ss_pred CeEEEEccCCCchheEEe-ecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccccceeEEEEEeCCCCCC
Confidence 799999999887778887 77778899999999999999999999988776432 2345788999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~ 242 (262)
|++||+|+++.... ....|++++|+.++...++++|+++++.+++.+++.+.+||+++. ..++++|++++|+|++
T Consensus 79 ~~~Gd~V~~~~~~~----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~ 154 (326)
T cd08272 79 FRVGDEVYGCAGGL----GGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGA 154 (326)
T ss_pred CCCCCEEEEccCCc----CCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 99999999875211 012588999999999999999999999999999999999999984 5889999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++|+.+|++|+
T Consensus 155 ~~~g~~~~~~a~~~g~~v~ 173 (326)
T cd08272 155 GGVGHVAVQLAKAAGARVY 173 (326)
T ss_pred CcHHHHHHHHHHHcCCEEE
Confidence 9999999999999999875
No 87
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.92 E-value=1.4e-23 Score=190.28 Aligned_cols=169 Identities=27% Similarity=0.385 Sum_probs=143.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||++++.+. ++++ +.+.|++.++||+||+.++++|+.|+..+.+... ...|.++|+|++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~---l~~~-~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~---~~~~~~~g~~~~G~V~~~g~~v~~ 73 (343)
T cd08236 1 MKALVLTGPGD---LRYE-DIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA---YHPPLVLGHEFSGTVEEVGSGVDD 73 (343)
T ss_pred CeeEEEecCCc---eeEE-ecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC---CCCCcccCcceEEEEEEECCCCCc
Confidence 79999998764 6776 8889999999999999999999999988877542 234678999999999999999999
Q ss_pred CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
|++||+|+++....+ +.+....|+|++|+.++++.++++|+++++++++.+ ..+.+||+++
T Consensus 74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l 152 (343)
T cd08236 74 LAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAV 152 (343)
T ss_pred CCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHH
Confidence 999999998632110 011124689999999999999999999999998877 5778999999
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
...++++|++|+|+| +|.+|++++|+|+.+|++ |+
T Consensus 153 ~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~ 188 (343)
T cd08236 153 RLAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVI 188 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 878899999999997 799999999999999987 53
No 88
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.91 E-value=2.4e-23 Score=188.50 Aligned_cols=169 Identities=28% Similarity=0.358 Sum_probs=142.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||+++.++. ++++ +.+.|++.++||+|+|.++++|+.|+....+..+. ..+|.++|+|++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~~~~~~g~e~~G~V~~~G~~v~~ 74 (337)
T cd08261 1 MKALVCEKPGR---LEVV-DIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF--ASYPRILGHELSGEVVEVGEGVAG 74 (337)
T ss_pred CeEEEEeCCCc---eEEE-ECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc--CCCCcccccccEEEEEEeCCCCCC
Confidence 78999987653 7777 88999999999999999999999999988876543 244678999999999999999999
Q ss_pred CCCCCEEEEecCcc---ccC---------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEK---ALE---------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~---~~~---------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
|++||+|++..... |.. +....|+|++|+.++++ ++++|+++++++++.+ ..+.++++++
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~ 152 (337)
T cd08261 75 LKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV 152 (337)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH
Confidence 99999999742110 000 01136899999999999 9999999999998876 5777899888
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+..++++|++|||+| +|++|.+++|+|+.+|++|+
T Consensus 153 ~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~ 187 (337)
T cd08261 153 RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVI 187 (337)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 778899999999996 79999999999999999875
No 89
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.91 E-value=1.4e-23 Score=191.09 Aligned_cols=173 Identities=27% Similarity=0.307 Sum_probs=144.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC----------CCCCCCCCCCccEEEE
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA----------TDSPLPTVPGYDVAGV 153 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~----------~~~~~p~~~G~e~vG~ 153 (262)
||||++...+.. ++++ +.+.|++.++||+||+.++++|++|++.+.|.++. ....+|.++|+|++|+
T Consensus 1 ~~a~~~~~~~~~--~~~~-~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~ 77 (350)
T cd08240 1 MKAAAVVEPGKP--LEEV-EIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE 77 (350)
T ss_pred CeeEEeccCCCC--ceEE-ecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence 799998877654 6677 88999999999999999999999999998875431 0134467899999999
Q ss_pred EEEeCCCCCCCCCCCEEEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775 154 VVKVGTQVKEFKEGDEVYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215 (262)
Q Consensus 154 Vv~vG~~v~~~~~Gd~V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~ 215 (262)
|+++|+++.++++||+|+++....+. . +....|++++|+.++.+.++++|+++++.+++.++
T Consensus 78 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~ 157 (350)
T cd08240 78 VVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLA 157 (350)
T ss_pred EEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhh
Confidence 99999999999999999886321100 0 00136899999999999999999999999999999
Q ss_pred chHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 216 LAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 216 ~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
+.+.|||++++.. .+++|++|+|+| +|++|++++|+||.+|+ +|
T Consensus 158 ~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v 203 (350)
T cd08240 158 CSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANI 203 (350)
T ss_pred chhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeE
Confidence 9999999999764 456899999996 89999999999999999 44
No 90
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.91 E-value=2.1e-23 Score=187.35 Aligned_cols=164 Identities=26% Similarity=0.311 Sum_probs=137.0
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||++.+++. ++++ +.+.|+++++||+||+.++++|++|.....|..+ +|.++|||++|+|+++|++
T Consensus 1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~--- 68 (319)
T cd08242 1 MKALVLDGGLD---LRVE-DLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA--- 68 (319)
T ss_pred CeeEEEeCCCc---EEEE-ECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC---
Confidence 78999987653 7888 8899999999999999999999999999887643 4678999999999999988
Q ss_pred CCCCCEEEEecCccc------------------cCCC-CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~-~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
+++||+|.......+ ..+. ...|+|++|+.++.+.++++|++++.++++.+ ..+.++|.+
T Consensus 69 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~ 147 (319)
T cd08242 69 ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI 147 (319)
T ss_pred CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH
Confidence 679999986432110 0111 23689999999999999999999999888764 445577877
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..++++|++|+|+| +|++|++++|+|+.+|++|+
T Consensus 148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi 183 (319)
T cd08242 148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVV 183 (319)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 7778999999999997 89999999999999999864
No 91
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.91 E-value=2.5e-23 Score=184.92 Aligned_cols=172 Identities=38% Similarity=0.569 Sum_probs=150.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++...+.+..++++ +.+.|.+.++||+|++.++++|++|+....|..+.. ...|.++|||++|+|+++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~ 78 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLG-DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGL-PPLPYVPGSDGAGVVEAVGEGVDG 78 (325)
T ss_pred CceEEEcccCCcccceee-ecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCC-CCCCeecccceEEEEEeeCCCCCC
Confidence 688998887766667787 888899999999999999999999998887765432 456789999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
|++||+|++..... ....|++++|+.++...++++|+++++++++.+++.+.+||+++.. .++++|++|+|+|++
T Consensus 79 ~~~Gd~v~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~ 154 (325)
T cd08253 79 LKVGDRVWLTNLGW----GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGS 154 (325)
T ss_pred CCCCCEEEEecccc----CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 99999999876311 0126899999999999999999999999999999999999999965 889999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++++.+|++|+
T Consensus 155 ~~~g~~~~~~a~~~g~~v~ 173 (325)
T cd08253 155 GAVGHAAVQLARWAGARVI 173 (325)
T ss_pred chHHHHHHHHHHHcCCEEE
Confidence 9999999999999999875
No 92
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.91 E-value=3.2e-23 Score=186.92 Aligned_cols=167 Identities=38% Similarity=0.512 Sum_probs=142.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
|||+++.++++ +++. +.+.|++.++||+||++++++|+.|.....|..+. .+|.++|+|++|+|+.+|+++++
T Consensus 1 ~~a~~~~~~~~---~~~~-~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~~ 73 (334)
T cd08234 1 MKALVYEGPGE---LEVE-EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVTG 73 (334)
T ss_pred CeeEEecCCCc---eEEE-eccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCCC
Confidence 78999988774 7777 88999999999999999999999999998887653 36789999999999999999999
Q ss_pred CCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
+++||+|++.....+. .+....|++++|+.++.+.++++|+++++.+++.+ ..+.++++++
T Consensus 74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l 152 (334)
T cd08234 74 FKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL 152 (334)
T ss_pred CCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH
Confidence 9999999873221100 00113689999999999999999999999888765 7778999998
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+.+++++|++|+|+| +|.+|.+++++||.+|++
T Consensus 153 ~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~ 185 (334)
T cd08234 153 DLLGIKPGDSVLVFG-AGPIGLLLAQLLKLNGAS 185 (334)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCc
Confidence 778999999999997 799999999999999987
No 93
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=6.7e-23 Score=184.07 Aligned_cols=175 Identities=34% Similarity=0.418 Sum_probs=149.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||||+++..+..+.++++ +.+.|.+.++||+|++.++++|++|++...|..+.. .+.|.++|||++|+|+++|+++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~ 78 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLV-EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPP-VKDPLIPLSDGAGEVVAVGEGVTR 78 (336)
T ss_pred CeEEEEeccCCCcceEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCC-CCCCcccccceeEEEEEeCCCCcC
Confidence 899999988666668887 777788999999999999999999999888765432 346788999999999999999999
Q ss_pred CCCCCEEEEecCccc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCC
Q 024775 164 FKEGDEVYGDINEKA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGF 230 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~ 230 (262)
|++||+|++.....+ ..+....|++++|+.++.+.++++|+++++.+++.+++.+.+||+++.. ..+
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~ 158 (336)
T cd08276 79 FKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPL 158 (336)
T ss_pred CCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCC
Confidence 999999998652111 1122236889999999999999999999999999999999999999864 789
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++|++|+|+| +|++|++++++|+..|++|+
T Consensus 159 ~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~ 188 (336)
T cd08276 159 KPGDTVLVQG-TGGVSLFALQFAKAAGARVI 188 (336)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 9999999996 89999999999999999875
No 94
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=6.2e-23 Score=183.26 Aligned_cols=169 Identities=41% Similarity=0.557 Sum_probs=148.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++.+++..+.++++ +.+.|++.++||+||+.++++|+.|+....+.... ...|.++|||++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~ 77 (325)
T cd08271 1 MKAWVLPKPGAALQLTLE-EIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYPHVPGVDGAGVVVAVGAKVTG 77 (325)
T ss_pred CeeEEEccCCCcceeEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCcccccceEEEEEEeCCCCCc
Confidence 799999998853348888 88999999999999999999999999887765432 223678999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~ 242 (262)
+++||+|+++... ...|+|++|+.++.+.++++|+++++.+++.+.+.+.++|+++.+ .++++|++|+|+|++
T Consensus 78 ~~~Gd~V~~~~~~------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~ 151 (325)
T cd08271 78 WKVGDRVAYHASL------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGA 151 (325)
T ss_pred CCCCCEEEeccCC------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 9999999987521 125899999999999999999999999999999999999999965 789999999999988
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++|+..|++|+
T Consensus 152 ~~ig~~~~~~a~~~g~~v~ 170 (325)
T cd08271 152 GGVGSFAVQLAKRAGLRVI 170 (325)
T ss_pred cHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999875
No 95
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.91 E-value=7.2e-23 Score=183.65 Aligned_cols=176 Identities=38% Similarity=0.499 Sum_probs=148.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++++...+....+++. +.+.|.+.+++|+|++.++++|++|++.+.|..+. ...+|.++|||++|+|+.+|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYG-DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI-KLPLPHILGSDGAGVVEAVGPGVTN 78 (342)
T ss_pred CeEEEEecCCCccceeEe-ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC-CCCCCeecccceEEEEEEeCCCCCC
Confidence 789998866666667777 77778899999999999999999999988875432 2345788999999999999999999
Q ss_pred CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
|++||+|++.....| ..+....|++++|+.++.+.++++|+++++++++.+++.+.+||+++
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l 158 (342)
T cd08266 79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHML 158 (342)
T ss_pred CCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHH
Confidence 999999998632111 01112368899999999999999999999999999999999999998
Q ss_pred H-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 E-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
. ..++++|++++|+|+.+++|++++++++..|++|+
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~ 195 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI 195 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence 5 57899999999999989999999999999999874
No 96
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.91 E-value=5.8e-23 Score=184.30 Aligned_cols=172 Identities=30% Similarity=0.420 Sum_probs=143.4
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|+.++.+ ...++++ +++.|.+.++||+||+.++++|+.|.+...+.... ...|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~ 76 (306)
T cd08258 1 MKALVKTGPG-PGNVELR-EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP--VETPVVLGHEFSGTIVEVGPDVEG 76 (306)
T ss_pred CeeEEEecCC-CCceEEe-ecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc--CCCCeeeccceEEEEEEECCCcCc
Confidence 6889987744 3458887 88999999999999999999999999888876421 334678999999999999999999
Q ss_pred CCCCCEEEEecCcc-c------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 164 FKEGDEVYGDINEK-A------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~-~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
|++||+|++..... + ..+....|+|++|++++...++++|+++++++++ ++..+.++|++
T Consensus 77 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~ 155 (306)
T cd08258 77 WKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHA 155 (306)
T ss_pred CCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHH
Confidence 99999999864200 0 0011235899999999999999999999998886 77788899999
Q ss_pred HH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+. ..++++|++|+|.| +|++|.+++|+|+.+|++|+
T Consensus 156 l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~ 192 (306)
T cd08258 156 VAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVV 192 (306)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 85 47899999999976 89999999999999999874
No 97
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.91 E-value=6.7e-23 Score=185.95 Aligned_cols=168 Identities=23% Similarity=0.271 Sum_probs=136.8
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++++++. +++. +.+.|.+ +++||+||+.++++|++|+..+.|..+ ...|.++|||++|+|+++|+++.
T Consensus 1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~ 73 (345)
T cd08287 1 MRATVIHGPGD---IRVE-EVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP---TRAPAPIGHEFVGVVEEVGSEVT 73 (345)
T ss_pred CceeEEecCCc---eeEE-eCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC---CCCCcccccceEEEEEEeCCCCC
Confidence 78999987665 6677 8899986 899999999999999999998887654 23478999999999999999999
Q ss_pred CCCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCC--CeEECCCCCCHhhHh-----cccch
Q 024775 163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAA-----GLPLA 217 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa-----~l~~~ 217 (262)
++++||+|++..... .+.+....|+|++|+.++.. .++++|++++++.+. ++...
T Consensus 74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~ 153 (345)
T cd08287 74 SVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDV 153 (345)
T ss_pred ccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcH
Confidence 999999998732110 01111235899999999964 899999999872211 22356
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 218 IETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 218 ~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+.+||+++..+.+++|++|+|.| +|++|++++|+||.+|++
T Consensus 154 ~~~a~~~~~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~ 194 (345)
T cd08287 154 MGTGHHAAVSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAE 194 (345)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 88999998878899999999976 899999999999999986
No 98
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.90 E-value=8.9e-23 Score=182.70 Aligned_cols=161 Identities=28% Similarity=0.380 Sum_probs=140.7
Q ss_pred cccCCcc--eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCC
Q 024775 90 GEYGGVD--VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEG 167 (262)
Q Consensus 90 ~~~g~~~--~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G 167 (262)
+.++.+. .++++ +.+.|.+.++||+||+.++++|+.|...+.+..... ..+|.++|+|++|+|+.+|++++.+++|
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G 81 (323)
T cd05282 4 TQFGEPLPLVLELV-SLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSR-PPLPAVPGNEGVGVVVEVGSGVSGLLVG 81 (323)
T ss_pred CcCCCCccceEEeE-eCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCC-CCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence 4444443 57777 778888999999999999999999999887765432 3467899999999999999999999999
Q ss_pred CEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHH
Q 024775 168 DEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVG 246 (262)
Q Consensus 168 d~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG 246 (262)
|+|+++.. .|+|++|+.++...++++|+++++.+++.+++.+.+||+++.. ..+++|++|+|+|+.|++|
T Consensus 82 d~V~~~~~---------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg 152 (323)
T cd05282 82 QRVLPLGG---------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVG 152 (323)
T ss_pred CEEEEeCC---------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHH
Confidence 99999752 4899999999999999999999999999999999999999864 6789999999999899999
Q ss_pred HHHHHHHHHcCCccC
Q 024775 247 SLVIQVCYYYLEFFF 261 (262)
Q Consensus 247 ~~aiqlAk~~Ga~V~ 261 (262)
++++++|+.+|++++
T Consensus 153 ~~~~~~a~~~g~~v~ 167 (323)
T cd05282 153 RMLIQLAKLLGFKTI 167 (323)
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999874
No 99
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.90 E-value=1.1e-22 Score=179.77 Aligned_cols=171 Identities=46% Similarity=0.632 Sum_probs=147.7
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++..++..+.+.++ +.+.|.+++|||+|++.++++|+.|+..+.|.... ....+|..+|||++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~ 79 (309)
T cd05289 1 MKAVRIHEYGGPEVLELA-DVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT 79 (309)
T ss_pred CceEEEcccCCccceeec-ccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence 789999988877666676 66777899999999999999999999988775421 1134578899999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG 241 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga 241 (262)
++++||+|+++... ...|+|++|+.++...++++|+++++..++.+++.+.++|+++.. ..+.+|++|+|+|+
T Consensus 80 ~~~~G~~V~~~~~~------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~ 153 (309)
T cd05289 80 GFKVGDEVFGMTPF------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA 153 (309)
T ss_pred CCCCCCEEEEccCC------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence 99999999987521 124899999999999999999999999999999999999999976 45999999999998
Q ss_pred chHHHHHHHHHHHHcCCccC
Q 024775 242 SGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|.+|++++++++..|++|+
T Consensus 154 ~g~~g~~~~~~a~~~g~~v~ 173 (309)
T cd05289 154 AGGVGSFAVQLAKARGARVI 173 (309)
T ss_pred CchHHHHHHHHHHHcCCEEE
Confidence 89999999999999999875
No 100
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.90 E-value=1.1e-22 Score=184.43 Aligned_cols=170 Identities=26% Similarity=0.239 Sum_probs=136.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|++.+.+. .+++. +.+.|.+.++||+||++++++|++|++++.+... .....+|.++|||++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~--~~~~~-~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~ 77 (341)
T PRK05396 1 MKALVKLKAEP--GLWLT-DVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT 77 (341)
T ss_pred CceEEEecCCC--ceEEE-ECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence 68999988773 47777 8899999999999999999999999998765321 11234567899999999999999999
Q ss_pred CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
.+++||+|++.....|. .+....|+|++|+.++.+.++++|+++++++++.+ ..+.+++++
T Consensus 78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~ 156 (341)
T PRK05396 78 GFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHT 156 (341)
T ss_pred cCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHH
Confidence 99999999986322110 01123689999999999999999999998888743 555666666
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+.. ..++|++|+|.| +|++|++++|+|+.+|++
T Consensus 157 ~~~-~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~ 189 (341)
T PRK05396 157 ALS-FDLVGEDVLITG-AGPIGIMAAAVAKHVGAR 189 (341)
T ss_pred HHc-CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 543 346899999987 799999999999999984
No 101
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.90 E-value=1.9e-22 Score=183.80 Aligned_cols=169 Identities=34% Similarity=0.450 Sum_probs=139.5
Q ss_pred eeEEEEcccCCcceEEEEeeecCCC-CCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~-~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
+|+|++.+++.+..++.. +.+.|. +.++||+||+.++++|++|+..+.+.... ....|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~V~~vG~~v~ 78 (352)
T cd08247 1 YKALTFKNNTSPLTITTI-KLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFH-FKVKEKGLGRDYSGVIVKVGSNVA 78 (352)
T ss_pred CceEEEecCCCcceeecc-CCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccc-cccCCCccCceeEEEEEEeCcccc
Confidence 478999999877555444 444443 38999999999999999999887543211 111367899999999999999998
Q ss_pred -CCCCCCEEEEecCccccCCCCCCCceeeEEEecCC----CeEECCCCCCHhhHhcccchHHHHHHHHHHc--CCCCCCE
Q 024775 163 -EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGLPLAIETAYEGLERT--GFSAGKS 235 (262)
Q Consensus 163 -~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~----~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~--~~~~g~~ 235 (262)
.|++||+|++.....+ ...|+|++|++++.. .++++|+++++.+++.+++++.|||+++... ++++|++
T Consensus 79 ~~~~~Gd~V~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~ 154 (352)
T cd08247 79 SEWKVGDEVCGIYPHPY----GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSK 154 (352)
T ss_pred cCCCCCCEEEEeecCCC----CCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCe
Confidence 8999999998753211 136899999999987 7899999999999999999999999999765 6999999
Q ss_pred EEEEcCchHHHHHHHHHHHHcCC
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
|+|+|++|++|++++|+|+.+|+
T Consensus 155 vlI~ga~~~vg~~~~~~a~~~~~ 177 (352)
T cd08247 155 VLVLGGSTSVGRFAIQLAKNHYN 177 (352)
T ss_pred EEEECCCchHHHHHHHHHHhcCC
Confidence 99999999999999999999843
No 102
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.90 E-value=1.9e-22 Score=183.23 Aligned_cols=169 Identities=22% Similarity=0.324 Sum_probs=136.1
Q ss_pred EEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcC-CCCCCCCCCCCCCCccEEEEEEEeCCCCCCCC
Q 024775 87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG-KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK 165 (262)
Q Consensus 87 ~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g-~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~ 165 (262)
+++++.+. ++++ +.+.|.+.++||+|+|.++++|+.|++.+.+ ..+.....+|.++|+|++|+|+++|+++.+|+
T Consensus 2 ~~~~~~~~---~~~~-~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (343)
T cd05285 2 AVLHGPGD---LRLE-ERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK 77 (343)
T ss_pred ceEecCCc---eeEE-ECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence 34555543 7777 8899999999999999999999999987643 22211123567899999999999999999999
Q ss_pred CCCEEEEecCccc------------------c-CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH
Q 024775 166 EGDEVYGDINEKA------------------L-EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE 226 (262)
Q Consensus 166 ~Gd~V~~~~~~~~------------------~-~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~ 226 (262)
+||+|++.....| + ......|+|++|++++++.++++|+++++++++.+ ..+.+||++++
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~~ 156 (343)
T cd05285 78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHACR 156 (343)
T ss_pred CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHHH
Confidence 9999987322111 0 11113689999999999999999999999998776 57789999987
Q ss_pred HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus 157 ~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~ 191 (343)
T cd05285 157 RAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVV 191 (343)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 88999999999987 799999999999999987 53
No 103
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.90 E-value=1.4e-22 Score=182.62 Aligned_cols=171 Identities=32% Similarity=0.382 Sum_probs=144.3
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
|++++.++|. .++++ +.+.|.+.++||+|++.++++|+.|...+.+..+. ..+|.++|+|++|+|+++|+++++|
T Consensus 1 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~~g~~~~~~ 75 (330)
T cd08245 1 KAAVVHAAGG--PLEPE-EVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG--SKYPLVPGHEIVGEVVEVGAGVEGR 75 (330)
T ss_pred CeEEEecCCC--CceEE-eccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC--CCCCcccCccceEEEEEECCCCccc
Confidence 6788888853 27777 88889899999999999999999999998876532 3457899999999999999999999
Q ss_pred CCCCEEEEec-----Ccc--c------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775 165 KEGDEVYGDI-----NEK--A------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225 (262)
Q Consensus 165 ~~Gd~V~~~~-----~~~--~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al 225 (262)
++||+|+... +.. + ..+....|+|++|+.++.+.++++|+++++.+++.+...+.+||+++
T Consensus 76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l 155 (330)
T cd08245 76 KVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL 155 (330)
T ss_pred ccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence 9999998421 100 0 00112368999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+..++++|++|+|+| +|++|++++++|+.+|.+|+
T Consensus 156 ~~~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~ 190 (330)
T cd08245 156 RDAGPRPGERVAVLG-IGGLGHLAVQYARAMGFETV 190 (330)
T ss_pred HhhCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 878899999999997 78899999999999999864
No 104
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.90 E-value=2.8e-22 Score=178.62 Aligned_cols=172 Identities=35% Similarity=0.518 Sum_probs=149.2
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||+|++...+.++.++++ +.+.|.+.+++|+|++.++++|+.|.....+..... ..+|..+|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~ 78 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIE-ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP-PPLPARLGYEAAGVVEAVGAGVTG 78 (328)
T ss_pred CeEEEEeccCCcceeEEe-ecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC-CCCCCCCCcceEEEEEeeCCCCCc
Confidence 789999887777668787 777788999999999999999999998877765432 344688999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~ 242 (262)
|++||+|+++... .....|++++|+.++.+.++++|+++++++++.+++.+.++|+++. ...+.++++++|+|++
T Consensus 79 ~~~Gd~V~~~~~~----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~ 154 (328)
T cd08268 79 FAVGDRVSVIPAA----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAAS 154 (328)
T ss_pred CCCCCEEEecccc----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence 9999999987531 1123589999999999999999999999999999999999999986 4788999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++++..|++++
T Consensus 155 ~~~g~~~~~~~~~~g~~v~ 173 (328)
T cd08268 155 SSVGLAAIQIANAAGATVI 173 (328)
T ss_pred cHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999864
No 105
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.90 E-value=3.9e-22 Score=177.46 Aligned_cols=167 Identities=37% Similarity=0.543 Sum_probs=147.0
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~ 163 (262)
||++.+...+....++++ +.+.+.+.++||+|++.+.++|+.|+....+.++.. ..+|.++|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~~ 78 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLV-EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVSR 78 (325)
T ss_pred CceEEEccCCCcccceEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCCC
Confidence 688998887777667776 666677899999999999999999998887755422 335688999999999999999999
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS 242 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~ 242 (262)
+++||+|+++.. .|++++|+.++...++++|+++++.+++.++..+.++|+++. ...+++|++++|+|++
T Consensus 79 ~~~Gd~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~ 149 (325)
T TIGR02824 79 WKVGDRVCALVA---------GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGA 149 (325)
T ss_pred CCCCCEEEEccC---------CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence 999999998652 489999999999999999999999999999999999999974 5789999999999999
Q ss_pred hHHHHHHHHHHHHcCCccC
Q 024775 243 GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 243 G~vG~~aiqlAk~~Ga~V~ 261 (262)
|++|++++++++.+|++|+
T Consensus 150 ~~~g~~~~~~a~~~g~~v~ 168 (325)
T TIGR02824 150 SGIGTTAIQLAKAFGARVF 168 (325)
T ss_pred chHHHHHHHHHHHcCCEEE
Confidence 9999999999999999864
No 106
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.89 E-value=5.6e-22 Score=175.61 Aligned_cols=164 Identities=34% Similarity=0.395 Sum_probs=144.4
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
|||.+...+....+++. +.+.+.+.++||+|+|.++++|+.|++...+..+. .+|.++|||++|+|+.+|++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~ 76 (320)
T cd05286 1 KAVRIHKTGGPEVLEYE-DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGF 76 (320)
T ss_pred CeEEEecCCCccceEEe-ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCC
Confidence 57777777776667776 66667789999999999999999999988776542 346789999999999999999999
Q ss_pred CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG 243 (262)
Q Consensus 165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G 243 (262)
++||+|+++. ..|++++|+.++.+.++++|+++++.+++.++..+.++|+++. ..++++|++|+|+|++|
T Consensus 77 ~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g 147 (320)
T cd05286 77 KVGDRVAYAG---------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG 147 (320)
T ss_pred CCCCEEEEec---------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 9999999864 1588999999999999999999999999999999999999985 47899999999999999
Q ss_pred HHHHHHHHHHHHcCCccC
Q 024775 244 GVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 244 ~vG~~aiqlAk~~Ga~V~ 261 (262)
++|++++++|+.+|++|+
T Consensus 148 ~~g~~~~~~a~~~g~~v~ 165 (320)
T cd05286 148 GVGLLLTQWAKALGATVI 165 (320)
T ss_pred hHHHHHHHHHHHcCCEEE
Confidence 999999999999999875
No 107
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.89 E-value=3.1e-22 Score=181.17 Aligned_cols=160 Identities=28% Similarity=0.374 Sum_probs=130.6
Q ss_pred EEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc-CCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCc
Q 024775 98 LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE 176 (262)
Q Consensus 98 l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~-g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~ 176 (262)
++++ +.++|.+.++||+||+.++++|++|+...+ +........+|.++|+|++|+|+++|+++++|++||+|++....
T Consensus 9 ~~~~-~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~ 87 (339)
T cd08232 9 LRVE-ERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSR 87 (339)
T ss_pred eEEE-EcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCC
Confidence 7777 889999999999999999999999988764 32222223456789999999999999999999999999874322
Q ss_pred ccc------------------CC-----CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCC
Q 024775 177 KAL------------------EG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233 (262)
Q Consensus 177 ~~~------------------~~-----~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g 233 (262)
.|. .+ ....|+|++|++++.+.++++|+++++++++. ..++.++|+++.+....+|
T Consensus 88 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~~~ 166 (339)
T cd08232 88 PCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDLAG 166 (339)
T ss_pred cCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCCCC
Confidence 111 00 01368999999999999999999999988865 5788899999976554499
Q ss_pred CEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 234 KSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
++|||.| +|++|++++|+|+.+|. ++
T Consensus 167 ~~VLI~g-~g~vG~~~~~lak~~G~~~v 193 (339)
T cd08232 167 KRVLVTG-AGPIGALVVAAARRAGAAEI 193 (339)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence 9999977 79999999999999998 44
No 108
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.89 E-value=7.5e-22 Score=180.94 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=135.0
Q ss_pred cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCC
Q 024775 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQ 160 (262)
Q Consensus 82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~ 160 (262)
.+|++|+. .++. ++++ +.+.|.+.++||+||+.++++|++|++.+.+.... ....+|.++|||++|+|+++|++
T Consensus 17 ~~~~~~~~-~~~~---l~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~ 91 (364)
T PLN02702 17 ENMAAWLV-GVNT---LKIQ-PFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSE 91 (364)
T ss_pred ccceEEEe-cCCc---eEEE-eccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCC
Confidence 34666666 3333 6666 77888899999999999999999999988763211 11235778999999999999999
Q ss_pred CCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775 161 VKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221 (262)
Q Consensus 161 v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA 221 (262)
+..|++||+|++.....| +......|+|++|+.++...++++|+++++++++.. ..+.++
T Consensus 92 v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a 170 (364)
T PLN02702 92 VKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVG 170 (364)
T ss_pred CCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHH
Confidence 999999999987422111 101112689999999999999999999999888752 344458
Q ss_pred HHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
|+++...++.+|++|+|+| +|++|++++|+|+.+|++
T Consensus 171 ~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~ 207 (364)
T PLN02702 171 VHACRRANIGPETNVLVMG-AGPIGLVTMLAARAFGAP 207 (364)
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 8888778899999999997 799999999999999986
No 109
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.89 E-value=4.8e-22 Score=177.12 Aligned_cols=151 Identities=25% Similarity=0.259 Sum_probs=129.2
Q ss_pred eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhH-cCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecC
Q 024775 97 VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN 175 (262)
Q Consensus 97 ~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~-~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~ 175 (262)
.++++ +.+.|++.++||+|++.++++|+.|+..+ .|..+.....+|.++|+|++|+|+.+|++++++++||+|+++.
T Consensus 6 ~~~~~-~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~- 83 (312)
T cd08269 6 RFEVE-EHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS- 83 (312)
T ss_pred eeEEE-ECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence 47787 88999999999999999999999999887 6654322223478899999999999999999999999999865
Q ss_pred ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHH
Q 024775 176 EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYY 255 (262)
Q Consensus 176 ~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~ 255 (262)
.|+|++|+.++++.++++|+++ ..++....++.++|++++..++++|++|+|+| +|++|.+++|+|+.
T Consensus 84 ---------~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~la~~ 151 (312)
T cd08269 84 ---------GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIG-AGFIGLLFLQLAAA 151 (312)
T ss_pred ---------CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH
Confidence 5899999999999999999988 22222236778999999888899999999997 79999999999999
Q ss_pred cCCc-cC
Q 024775 256 YLEF-FF 261 (262)
Q Consensus 256 ~Ga~-V~ 261 (262)
+|++ |+
T Consensus 152 ~g~~~v~ 158 (312)
T cd08269 152 AGARRVI 158 (312)
T ss_pred cCCcEEE
Confidence 9998 54
No 110
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.89 E-value=5.6e-22 Score=176.66 Aligned_cols=167 Identities=41% Similarity=0.622 Sum_probs=142.2
Q ss_pred EEcccCCcceE--EEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-CCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 88 LYGEYGGVDVL--KFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 88 v~~~~g~~~~l--~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
+++..++++++ +++ +.+.|++.++||+|++.++++|+.|.+...|..+.. ....|..+|||++|+|+++|+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~ 80 (319)
T cd08267 2 VYTRYGSPEVLLLLEV-EVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRF 80 (319)
T ss_pred eeCCCCChhhhhhccc-cCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCC
Confidence 45556665443 677 788899999999999999999999999887754211 12345789999999999999999999
Q ss_pred CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCch
Q 024775 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSG 243 (262)
Q Consensus 165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G 243 (262)
++||+|++.... ...|+|++|+.++.+.++++|++++.++++.+++.+.+||+++.+ ..+++|++|+|+|++|
T Consensus 81 ~~Gd~V~~~~~~------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g 154 (319)
T cd08267 81 KVGDEVFGRLPP------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASG 154 (319)
T ss_pred CCCCEEEEeccC------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence 999999987521 125899999999999999999999999999999999999999976 4599999999999889
Q ss_pred HHHHHHHHHHHHcCCccC
Q 024775 244 GVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 244 ~vG~~aiqlAk~~Ga~V~ 261 (262)
++|++++++|+.+|++|+
T Consensus 155 ~~g~~~~~la~~~g~~v~ 172 (319)
T cd08267 155 GVGTFAVQIAKALGAHVT 172 (319)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 999999999999999875
No 111
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.89 E-value=6e-22 Score=174.80 Aligned_cols=148 Identities=30% Similarity=0.480 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCC
Q 024775 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF 185 (262)
Q Consensus 106 ~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~ 185 (262)
.|.+.++||+||+.++++|+.|+..+.+.++. ...+|.++|+|++|+|+++|+++.++++||+|+++.. ...
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~ 73 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT-MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-------ESM 73 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC-CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-------CCC
Confidence 56789999999999999999999998886543 2356789999999999999999999999999998752 125
Q ss_pred CceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 186 G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|+|++|+.++++.++++|+++++++++.++..+.+||++++...+++|++|+|++++|++|++++|+|+.+|++|+
T Consensus 74 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~ 149 (303)
T cd08251 74 GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIY 149 (303)
T ss_pred cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence 8999999999999999999999999999999999999999888999999999999999999999999999999874
No 112
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.89 E-value=1.3e-21 Score=175.94 Aligned_cols=163 Identities=23% Similarity=0.268 Sum_probs=135.8
Q ss_pred eeEEEEcccC----CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeC
Q 024775 84 MKAWLYGEYG----GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVG 158 (262)
Q Consensus 84 ~ka~v~~~~g----~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG 158 (262)
+|+|++...+ .++.++++ +.+.|.+.++||+||+.++++|+.|.....+.... .+...+.++|+|++|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G 80 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELV-EVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESR 80 (329)
T ss_pred CcEEEEeccCCCCCCccceeEE-eccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecC
Confidence 6888887765 45778888 88999999999999999999999887655543211 112234678999999999999
Q ss_pred CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecC-CCeEECCCCCC--HhhHhc-ccchHHHHHHHHHH-cCCCCC
Q 024775 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKPKNLD--FVQAAG-LPLAIETAYEGLER-TGFSAG 233 (262)
Q Consensus 159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~-~~~~~lP~~~~--~~~aa~-l~~~~~tA~~al~~-~~~~~g 233 (262)
.+ .|++||+|++ .++|++|+.++. +.++++|++++ +.+++. +++.+.+||+++.. ..+.+|
T Consensus 81 ~~--~~~~Gd~V~~------------~~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~ 146 (329)
T cd05288 81 SP--DFKVGDLVSG------------FLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPG 146 (329)
T ss_pred CC--CCCCCCEEec------------ccceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCC
Confidence 64 7999999987 357999999999 99999999984 555555 88899999999865 678999
Q ss_pred CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 234 KSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++|+|+|++|++|++++|+|+.+|++|+
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi 174 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLGARVV 174 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999864
No 113
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.88 E-value=7.5e-22 Score=180.05 Aligned_cols=167 Identities=41% Similarity=0.568 Sum_probs=135.2
Q ss_pred cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCC--CCCCCCCCccEEEE---EEE
Q 024775 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVAGV---VVK 156 (262)
Q Consensus 82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~--~~~p~~~G~e~vG~---Vv~ 156 (262)
++++.+.+........+.+.++.++|.++++|++|++.++++|+.|+.++.|...... ..+|.+++.++.|+ +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~ 82 (347)
T KOG1198|consen 3 KKIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVES 82 (347)
T ss_pred cccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEec
Confidence 3455555555554444555568999999999999999999999999999998765432 36775555555554 445
Q ss_pred eC-CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-c------
Q 024775 157 VG-TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-T------ 228 (262)
Q Consensus 157 vG-~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~------ 228 (262)
+| ..+..+..||.+.... ..|+|+||+++|+..++++|+.+++++++.++.++.|||.++.. .
T Consensus 83 ~g~~~~~~~~~g~~~~~~~---------~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~ 153 (347)
T KOG1198|consen 83 VGDDVVGGWVHGDAVVAFL---------SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSK 153 (347)
T ss_pred cccccccceEeeeEEeecc---------CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhcccccccc
Confidence 55 3445577777666654 37999999999999999999999999999999999999999965 6
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcC
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYL 257 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G 257 (262)
++++|+.|||+||+|+||++++|+||++|
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~ 182 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG 182 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999
No 114
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.88 E-value=1.3e-21 Score=177.61 Aligned_cols=171 Identities=28% Similarity=0.289 Sum_probs=137.0
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||+|+++.++. .+++. +.+.|.+.++||+||+.++++|+.|+..+.+... .....+|.++|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~ 77 (341)
T cd05281 1 MKAIVKTKAGP--GAELV-EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT 77 (341)
T ss_pred CcceEEecCCC--ceEEE-eCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence 78999998775 37777 8889999999999999999999999987654321 11133467899999999999999999
Q ss_pred CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775 163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a 224 (262)
.+++||+|+++....|. .+....|+|++|++++.+.++++|++++.+. +.++..+.++|++
T Consensus 78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~-a~~~~~~~~a~~~ 156 (341)
T cd05281 78 RVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEI-ASIQEPLGNAVHT 156 (341)
T ss_pred CCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHH-hhhhhHHHHHHHH
Confidence 99999999986221110 0011358999999999999999999998854 4567777888888
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
+. ...++|++|+|+| +|++|++++|+|+.+|+ +|
T Consensus 157 ~~-~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v 191 (341)
T cd05281 157 VL-AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLV 191 (341)
T ss_pred HH-hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence 75 4567999999987 79999999999999998 45
No 115
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.88 E-value=2.2e-21 Score=179.42 Aligned_cols=173 Identities=28% Similarity=0.362 Sum_probs=135.3
Q ss_pred cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-----CCCCCCCCCCCccEEEEEEE
Q 024775 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-----ATDSPLPTVPGYDVAGVVVK 156 (262)
Q Consensus 82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-----~~~~~~p~~~G~e~vG~Vv~ 156 (262)
+.+...++... + ++++ +.+.|+++++||+||+.++++|++|++.+.+... ....++|.++|||++|+|++
T Consensus 27 ~~~~~~~~~~~-~---~~~~-~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 101 (384)
T cd08265 27 TNLGSKVWRYP-E---LRVE-DVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEK 101 (384)
T ss_pred ccceeEEEeCC-C---EEEE-ECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEE
Confidence 33555555532 2 7777 8899999999999999999999999988763210 01134678999999999999
Q ss_pred eCCCCCCCCCCCEEEEecCccc------cC------------CCCCCCceeeEEEecCCCeEECCCCC-------CHhhH
Q 024775 157 VGTQVKEFKEGDEVYGDINEKA------LE------------GPKQFGSLAEYTAVEERLLAPKPKNL-------DFVQA 211 (262)
Q Consensus 157 vG~~v~~~~~Gd~V~~~~~~~~------~~------------~~~~~G~~ae~~~v~~~~~~~lP~~~-------~~~~a 211 (262)
+|+++..|++||+|++.....| .. +....|+|++|+.+++..++++|+.+ +.+ +
T Consensus 102 vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~ 180 (384)
T cd08265 102 TGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-A 180 (384)
T ss_pred ECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-H
Confidence 9999999999999986321111 10 11236899999999999999999863 444 5
Q ss_pred hcccchHHHHHHHHH-H-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775 212 AGLPLAIETAYEGLE-R-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF 261 (262)
Q Consensus 212 a~l~~~~~tA~~al~-~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~ 261 (262)
+.++.++.+||+++. . .++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 181 a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi 232 (384)
T cd08265 181 GALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVI 232 (384)
T ss_pred hhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 667778899999994 4 6899999999996 79999999999999998 453
No 116
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.88 E-value=3.1e-21 Score=173.15 Aligned_cols=161 Identities=37% Similarity=0.576 Sum_probs=141.3
Q ss_pred eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
|++++...+....++++ +.+.|.+.++||+|++.++++|+.|.....|.++.. ...|..+|+|++|+|+.+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~ 78 (337)
T cd08275 1 RAVVLTGFGGLDKLKVE-KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPFVPGFECAGTVEAVGEGVKDF 78 (337)
T ss_pred CeEEEcCCCCccceEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCC-CCCCCCCcceeEEEEEEECCCCcCC
Confidence 56777777766567777 667778899999999999999999999887765322 3456789999999999999999999
Q ss_pred CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG 243 (262)
Q Consensus 165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G 243 (262)
++||+|+++.. .|+|++|+.++.+.++++|+++++.+++.+++.+.++|+++. ..++++|++|+|+|++|
T Consensus 79 ~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g 149 (337)
T cd08275 79 KVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG 149 (337)
T ss_pred CCCCEEEEecC---------CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence 99999999752 589999999999999999999999999999999999999985 57899999999999889
Q ss_pred HHHHHHHHHHHHc
Q 024775 244 GVGSLVIQVCYYY 256 (262)
Q Consensus 244 ~vG~~aiqlAk~~ 256 (262)
++|++++++|+.+
T Consensus 150 ~~g~~~~~~a~~~ 162 (337)
T cd08275 150 GVGLAAGQLCKTV 162 (337)
T ss_pred hHHHHHHHHHHHc
Confidence 9999999999998
No 117
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.87 E-value=5.5e-21 Score=166.02 Aligned_cols=147 Identities=36% Similarity=0.463 Sum_probs=126.4
Q ss_pred eEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCcc--------------c
Q 024775 113 QVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEK--------------A 178 (262)
Q Consensus 113 eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~--------------~ 178 (262)
||+|+|.++++|+.|+..+.|..+ ....+|.++|+|++|+|+++|+++..|++||+|++..... .
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~ 79 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYP-PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGG 79 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCC-cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCC
Confidence 689999999999999999988654 1244578999999999999999999999999999875321 1
Q ss_pred cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcC
Q 024775 179 LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYL 257 (262)
Q Consensus 179 ~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G 257 (262)
..+....|+|++|+.++.+.++++|+++++++++.++..+.+||+++... .+++|++|+|+|+.+ +|++++++++..|
T Consensus 80 ~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g 158 (271)
T cd05188 80 ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAG 158 (271)
T ss_pred EeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcC
Confidence 12223468999999999999999999999999999999999999999764 459999999999666 9999999999999
Q ss_pred CccC
Q 024775 258 EFFF 261 (262)
Q Consensus 258 a~V~ 261 (262)
.+|+
T Consensus 159 ~~v~ 162 (271)
T cd05188 159 ARVI 162 (271)
T ss_pred CeEE
Confidence 8874
No 118
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.87 E-value=1.3e-20 Score=167.19 Aligned_cols=166 Identities=39% Similarity=0.546 Sum_probs=143.1
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK 162 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~ 162 (262)
||++++...+....+++. +.+ |.+. ++||+|++.++++|+.|+..+.|..... ...|..+|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~ 77 (323)
T cd08241 1 MKAVVCKELGGPEDLVLE-EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK-PPLPFVPGSEVAGVVEAVGEGVT 77 (323)
T ss_pred CeEEEEecCCCcceeEEe-cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCC-CCCCCcccceeEEEEEEeCCCCC
Confidence 689998877766567776 556 6665 5999999999999999999887755321 23466899999999999999999
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcC
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG 241 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga 241 (262)
.+++||+|+++.. .|++++|+.++.+.++++|++++..+++.+...+.+||+++. ...+++|++|+|+|+
T Consensus 78 ~~~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~ 148 (323)
T cd08241 78 GFKVGDRVVALTG---------QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGA 148 (323)
T ss_pred CCCCCCEEEEecC---------CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence 9999999999751 488999999999999999999999888888999999999986 578999999999998
Q ss_pred chHHHHHHHHHHHHcCCccC
Q 024775 242 SGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|++++++|+.+|++|+
T Consensus 149 ~~~~g~~~~~~a~~~g~~v~ 168 (323)
T cd08241 149 AGGVGLAAVQLAKALGARVI 168 (323)
T ss_pred CchHHHHHHHHHHHhCCEEE
Confidence 89999999999999999875
No 119
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.87 E-value=6.3e-21 Score=173.06 Aligned_cols=165 Identities=27% Similarity=0.308 Sum_probs=131.1
Q ss_pred ccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCE
Q 024775 91 EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE 169 (262)
Q Consensus 91 ~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~ 169 (262)
+++.. ++++ +.+.|.+.++||+||+.++++|+.|+..+.+... ....++|.++|+|++|+|+++|+++.+|++||+
T Consensus 6 ~~~~~--~~l~-~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~ 82 (340)
T TIGR00692 6 KPGYG--AELT-EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY 82 (340)
T ss_pred cCCCC--cEEE-ECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence 44443 6676 8899999999999999999999999988765421 111345678999999999999999999999999
Q ss_pred EEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCC
Q 024775 170 VYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS 231 (262)
Q Consensus 170 V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~ 231 (262)
|++.....|. . +....|+|++|++++++.++++|++++++++ .++..+.++|+++ ....+
T Consensus 83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~-~~~~~ 160 (340)
T TIGR00692 83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV-LAGPI 160 (340)
T ss_pred EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH-HccCC
Confidence 9884321110 0 0113689999999999999999999998654 5677888999886 44578
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
+|++|+|.| +|++|.+++|+|+.+|++ |+
T Consensus 161 ~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~ 190 (340)
T TIGR00692 161 SGKSVLVTG-AGPIGLMAIAVAKASGAYPVI 190 (340)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 999999976 799999999999999986 53
No 120
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.84 E-value=4.9e-20 Score=160.73 Aligned_cols=136 Identities=35% Similarity=0.462 Sum_probs=124.2
Q ss_pred CeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeE
Q 024775 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEY 191 (262)
Q Consensus 112 ~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~ 191 (262)
+||+||+.++++|++|++...|..+ .+|.++|+|++|+|+++|+++..+++||+|+++. .|+|++|
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~----------~g~~~~~ 66 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA----------PGAFATH 66 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe----------cCcccce
Confidence 5899999999999999999887642 3467899999999999999999999999999875 4899999
Q ss_pred EEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 192 ~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.++.+.++++|+++++.+++.+++.+.++|.++.. ..+++|++|+|+|+.|++|++++|+|+.+|++|+
T Consensus 67 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~ 137 (293)
T cd05195 67 VRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVF 137 (293)
T ss_pred EEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999854 7899999999999999999999999999999864
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.82 E-value=3.5e-19 Score=155.34 Aligned_cols=131 Identities=36% Similarity=0.492 Sum_probs=120.2
Q ss_pred EEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEec
Q 024775 116 IKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195 (262)
Q Consensus 116 VkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~ 195 (262)
||+.++++|+.|++...|.++ .|.++|+|++|+|+++|+++..|++||+|+++. .|+|++|+.++
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~ 66 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------PGSFATYVRTD 66 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------CCceeeEEEcc
Confidence 789999999999999887643 257899999999999999999999999999975 48999999999
Q ss_pred CCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 196 ~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.++++|+++++.+++.+++.+.++|+++ +...+++|++|+|+|++|++|++++++|+.+|++|+
T Consensus 67 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~ 133 (288)
T smart00829 67 ARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVF 133 (288)
T ss_pred HHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999998 457899999999999999999999999999999874
No 122
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.81 E-value=1.9e-19 Score=159.66 Aligned_cols=114 Identities=23% Similarity=0.224 Sum_probs=97.9
Q ss_pred CCCccEEEEEEEeCCCCC------CCCCCCEEEEecCccc------c------------CC-------CCCCCceeeEEE
Q 024775 145 VPGYDVAGVVVKVGTQVK------EFKEGDEVYGDINEKA------L------------EG-------PKQFGSLAEYTA 193 (262)
Q Consensus 145 ~~G~e~vG~Vv~vG~~v~------~~~~Gd~V~~~~~~~~------~------------~~-------~~~~G~~ae~~~ 193 (262)
++|||++|+|+++|++|+ .|++||||+......| . .+ ....|+|+||++
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~ 80 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH 80 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence 589999999999999999 8999999976432111 0 00 113599999999
Q ss_pred ecCC-CeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 194 VEER-LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 194 v~~~-~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+++. .++++|+++++++++.+.+.+.|+|+++++....+|++|+|+| +|++|++++|+||.+|++
T Consensus 81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~ 146 (280)
T TIGR03366 81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAA 146 (280)
T ss_pred ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 9997 6999999999999999899999999999887778999999998 699999999999999997
No 123
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=151.77 Aligned_cols=150 Identities=25% Similarity=0.265 Sum_probs=119.1
Q ss_pred ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC--CCCCCCCCCCEEEEe
Q 024775 96 DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG--TQVKEFKEGDEVYGD 173 (262)
Q Consensus 96 ~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~~Gd~V~~~ 173 (262)
+.++++ +.++|+|++||||||+.|.+++|..+..++... . --.|+-+|-..+|.++... +...+|++||.|...
T Consensus 25 d~F~le-e~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~-S--Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~ 100 (340)
T COG2130 25 DDFRLE-EVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP-S--YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV 100 (340)
T ss_pred CCceeE-eccCCCCCcCceEEEEEEeccCHHHeecccCCc-c--cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec
Confidence 558888 999999999999999999999996665554332 1 1235667766665444332 567889999999984
Q ss_pred cCccccCCCCCCCceeeEEEecCCCeEECCCCC-CH-hhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHH
Q 024775 174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-DF-VQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVI 250 (262)
Q Consensus 174 ~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~-~~-~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~ai 250 (262)
.+|+||.+++.+.+.|+++.. ++ .....+.....|||.+|.+ .+.++|++|+|.+|+|++|..+.
T Consensus 101 ------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvg 168 (340)
T COG2130 101 ------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVG 168 (340)
T ss_pred ------------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHH
Confidence 589999999999999997553 22 3334457778899999965 78999999999999999999999
Q ss_pred HHHHHcCCccC
Q 024775 251 QVCYYYLEFFF 261 (262)
Q Consensus 251 qlAk~~Ga~V~ 261 (262)
|+||..|++|.
T Consensus 169 QiAKlkG~rVV 179 (340)
T COG2130 169 QIAKLKGCRVV 179 (340)
T ss_pred HHHHhhCCeEE
Confidence 99999999984
No 124
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.76 E-value=4.1e-18 Score=130.58 Aligned_cols=91 Identities=36% Similarity=0.448 Sum_probs=73.8
Q ss_pred CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCc--------------
Q 024775 111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE-------------- 176 (262)
Q Consensus 111 ~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~-------------- 176 (262)
|+||||||.+++||++|++.++|.. ....++|.++|||++|+|+++|+++++|++||+|+.....
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~-~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~ 79 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGP-PPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPN 79 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSS-SSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhcc-ccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccc
Confidence 6899999999999999999999852 2236788999999999999999999999999999985431
Q ss_pred ----cccCCCCCCCceeeEEEecCCCeEEC
Q 024775 177 ----KALEGPKQFGSLAEYTAVEERLLAPK 202 (262)
Q Consensus 177 ----~~~~~~~~~G~~ae~~~v~~~~~~~l 202 (262)
....+....|+|+||++++++.++++
T Consensus 80 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 80 LCPNPEVLGLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp GTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred cCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence 12344456899999999999999875
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.70 E-value=1.5e-16 Score=139.84 Aligned_cols=108 Identities=35% Similarity=0.436 Sum_probs=99.4
Q ss_pred CCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHH
Q 024775 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219 (262)
Q Consensus 140 ~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~ 219 (262)
.++|.++|+|++|+|+++|++++.|++||+|+++ +.|++|+.++.+.++++|+++++.+++.+ ..+.
T Consensus 18 ~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ 84 (277)
T cd08255 18 LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAA 84 (277)
T ss_pred CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHH
Confidence 4578999999999999999999999999999984 35899999999999999999999888888 7899
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775 220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF 261 (262)
Q Consensus 220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~ 261 (262)
+||++++..++++|++++|+| +|++|++++++|+.+|++ |+
T Consensus 85 ta~~~~~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi 126 (277)
T cd08255 85 TALNGVRDAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVV 126 (277)
T ss_pred HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence 999999888999999999997 799999999999999988 64
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=126.46 Aligned_cols=163 Identities=21% Similarity=0.240 Sum_probs=119.3
Q ss_pred eeEEEEcccCCc----ceEEEEe-eecC-CCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCC----ccEEEE
Q 024775 84 MKAWLYGEYGGV----DVLKFDE-KVTV-PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPG----YDVAGV 153 (262)
Q Consensus 84 ~ka~v~~~~g~~----~~l~~~~-~~~~-p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G----~e~vG~ 153 (262)
.|+|++..+-.. +.+.+.. +.++ .++++++||||..|.+.+|..+.+++...+.. --.|+.+| ..++|+
T Consensus 4 nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~-y~~~~~~G~pi~g~GV~k 82 (343)
T KOG1196|consen 4 NKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSD-YAPPYEPGKPIDGFGVAK 82 (343)
T ss_pred ccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCccc-ccCcccCCcEecCCceEE
Confidence 567777664221 3344331 2333 35688999999999999999987776543332 11233343 377899
Q ss_pred EEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCC--eEECC--CCCCHhhHhcc-cchHHHHHHHHH-H
Q 024775 154 VVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAPKP--KNLDFVQAAGL-PLAIETAYEGLE-R 227 (262)
Q Consensus 154 Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~--~~~lP--~~~~~~~aa~l-~~~~~tA~~al~-~ 227 (262)
|++. +-.+|++||.|++.. +|.||.+++... .++++ .+.++.....+ ..+.+|||.++. .
T Consensus 83 Vi~S--~~~~~~~GD~v~g~~------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei 148 (343)
T KOG1196|consen 83 VIDS--GHPNYKKGDLVWGIV------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEI 148 (343)
T ss_pred EEec--CCCCCCcCceEEEec------------cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHh
Confidence 9985 556899999999965 699999997654 34443 45555554444 778889999995 5
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...+.|++|+|.||+|++|+.+.|+||.+||+|.
T Consensus 149 ~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VV 182 (343)
T KOG1196|consen 149 CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVV 182 (343)
T ss_pred cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEE
Confidence 8899999999999999999999999999999874
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.47 E-value=7.7e-14 Score=138.54 Aligned_cols=149 Identities=26% Similarity=0.313 Sum_probs=127.4
Q ss_pred CCcceEEEEeeecCC---CCCCCeEEEEEEEEecChhhHHhHcCCCCCCC-----CCCCCCCCccEEEEEEEeCCCCCCC
Q 024775 93 GGVDVLKFDEKVTVP---QVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-----SPLPTVPGYDVAGVVVKVGTQVKEF 164 (262)
Q Consensus 93 g~~~~l~~~~~~~~p---~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~-----~~~p~~~G~e~vG~Vv~vG~~v~~~ 164 (262)
|+...++|. +.+.. +..++.=+.-|.|+.||..|+.+..|+.+..- .....++|-|++|+ .
T Consensus 1424 GDlsSlrWi-es~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d 1492 (2376)
T KOG1202|consen 1424 GDLSSLRWI-ESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------D 1492 (2376)
T ss_pred ccccceeee-ecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------c
Confidence 566678888 65543 44667778899999999999999999875431 22346789999887 4
Q ss_pred CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG 243 (262)
Q Consensus 165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G 243 (262)
+-|.||.++.+ .-++++.+.++.+.++.+|.+-.+++|+..|+.+.|+|++|. +.++++|++|||++|+|
T Consensus 1493 ~~GrRvM~mvp---------AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsG 1563 (2376)
T KOG1202|consen 1493 ASGRRVMGMVP---------AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSG 1563 (2376)
T ss_pred CCCcEEEEeee---------hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCC
Confidence 45999999886 567889999999999999999999999999999999999995 68999999999999999
Q ss_pred HHHHHHHHHHHHcCCccC
Q 024775 244 GVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 244 ~vG~~aiqlAk~~Ga~V~ 261 (262)
++|++||.+|.++|++||
T Consensus 1564 GVGQAAIaiALa~G~~VF 1581 (2376)
T KOG1202|consen 1564 GVGQAAIAIALAHGCTVF 1581 (2376)
T ss_pred chhHHHHHHHHHcCCEEE
Confidence 999999999999999998
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.41 E-value=0.044 Score=52.91 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=28.4
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..++++|+|+| +|.+|+.+++.||.+|++|+
T Consensus 162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~ 192 (509)
T PRK09424 162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVR 192 (509)
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence 46899999999 99999999999999999764
No 129
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.71 E-value=0.29 Score=46.28 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.3
Q ss_pred HHHHHHHHc-CCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 220 TAYEGLERT-GFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 220 tA~~al~~~-~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|.++.++ ++. .|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus 197 s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~Vi 239 (425)
T PRK05476 197 SLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVI 239 (425)
T ss_pred hhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 356666654 554 899999999 99999999999999999874
No 130
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.17 E-value=0.27 Score=48.09 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=28.6
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+.|++|+|.| +|+.|+.+++.++.+|++|.
T Consensus 133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~ 164 (564)
T PRK12771 133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVT 164 (564)
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 367899999999 99999999999999998763
No 131
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.76 E-value=0.25 Score=46.53 Aligned_cols=40 Identities=28% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHH-cC-CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 221 AYEGLER-TG-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 221 A~~al~~-~~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.++.+ .+ ..+|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~Vi 229 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVI 229 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 3455543 34 46999999999 99999999999999999874
No 132
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=90.66 E-value=0.27 Score=26.73 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=13.6
Q ss_pred eeEEEEcccCCcceEEEEeeecCCCC
Q 024775 84 MKAWLYGEYGGVDVLKFDEKVTVPQV 109 (262)
Q Consensus 84 ~ka~v~~~~g~~~~l~~~~~~~~p~~ 109 (262)
|||++|+++++ .+++ +++.|.+
T Consensus 1 MkAv~y~G~~~---v~ve-~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD---VRVE-EVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE---EEEE-EE----S
T ss_pred CcceEEeCCCc---eEEE-ECCCccc
Confidence 89999999998 4455 8887765
No 133
>PRK08324 short chain dehydrogenase; Validated
Probab=90.11 E-value=0.26 Score=49.34 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=43.8
Q ss_pred CceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 186 G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.++.+|..+++..++.+ +..+.+++.... ........|+++||.||+|++|+..++.+...|++|+
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~---------~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vv 450 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQR---------MPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVV 450 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhc---------CCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEE
Confidence 45667777776666555 344444443100 0012234789999999999999999999999998764
No 134
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=89.33 E-value=0.57 Score=40.84 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=49.1
Q ss_pred CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH--cCCCCCCEEEEE
Q 024775 162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER--TGFSAGKSILVL 239 (262)
Q Consensus 162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~--~~~~~g~~VlI~ 239 (262)
+.+++||+++... +|.+|.. +...++.+++++.+..+.. - +...+++. ....++++||-.
T Consensus 65 ~p~~~g~~~~i~p------------~~~~~~~-~~~~~i~i~p~~afgtg~h----~-tt~~~l~~l~~~~~~~~~VLDi 126 (250)
T PRK00517 65 HPIRIGDRLWIVP------------SWEDPPD-PDEINIELDPGMAFGTGTH----P-TTRLCLEALEKLVLPGKTVLDV 126 (250)
T ss_pred CCEEEcCCEEEEC------------CCcCCCC-CCeEEEEECCCCccCCCCC----H-HHHHHHHHHHhhcCCCCEEEEe
Confidence 3467898877644 4666644 6667788888877654432 1 12223332 235789999999
Q ss_pred cCchHHHHHHHHHHHHcCCc
Q 024775 240 NGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 240 Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
| +|. |..++.+++ .|+.
T Consensus 127 G-cGs-G~l~i~~~~-~g~~ 143 (250)
T PRK00517 127 G-CGS-GILAIAAAK-LGAK 143 (250)
T ss_pred C-CcH-HHHHHHHHH-cCCC
Confidence 8 887 888876655 5654
No 135
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.31 E-value=0.27 Score=46.41 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=32.5
Q ss_pred HHcCCCCCCEEE----EEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSIL----VLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~Vl----I~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...++++|+.+| |+||+|++|.+++|+++..|++||
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~ 66 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVV 66 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeee
Confidence 347888999988 889999999999999999999987
No 136
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.95 E-value=0.44 Score=46.64 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=31.1
Q ss_pred HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+.+.|++|||.||+|++|+.+++.+...|.+|+
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv 108 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR 108 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE
Confidence 56788999999999999999999998888898774
No 137
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.77 E-value=0.49 Score=39.04 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.--.|.+|.|+| .|.+|+.+++.++.+|++|+
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVI 63 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEE
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCceeE
Confidence 345799999999 99999999999999999874
No 138
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.71 E-value=0.72 Score=43.34 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHc-C-CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 221 AYEGLERT-G-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 221 A~~al~~~-~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.++.+. + ...|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~Vi 222 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVI 222 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEE
Confidence 44555443 4 46899999999 99999999999999999874
No 139
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.56 E-value=1.3 Score=39.80 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=26.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|+|+| .|.+|+.+++.++.+|++|+
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~ 179 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALGANVT 179 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence 689999999 89999999999999999774
No 140
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.52 E-value=0.67 Score=44.85 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.++++|+|+| +|.+|+.++++|+.+|+.|+
T Consensus 162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~ 191 (511)
T TIGR00561 162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVR 191 (511)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 4678999999 99999999999999999774
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.93 E-value=0.36 Score=43.58 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=43.4
Q ss_pred CeEECCCCCCHhhHhcccchHHHHHHHHHHcCC----CCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF----SAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 198 ~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~----~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
..+++|+.+..+.+... .++..++.+++.+.. .++++|+|.| +|.+|+.+++.++..|++
T Consensus 140 ~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~ 203 (311)
T cd05213 140 KAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVA 203 (311)
T ss_pred HHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCC
Confidence 45667777776666554 234457777754432 4799999999 899999999999887753
No 142
>PRK05866 short chain dehydrogenase; Provisional
Probab=85.73 E-value=0.91 Score=40.35 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=26.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.+++|.||+|++|...++.+...|++|+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi 68 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVV 68 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999888888888764
No 143
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=85.22 E-value=1.5 Score=30.76 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=30.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCc-hHHHHHHHHHHHHcCCcc
Q 024775 221 AYEGLERTGFSAGKSILVLNGS-GGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~-G~vG~~aiqlAk~~Ga~V 260 (262)
-|.+|....-+-++.+||+|++ .+...++.+.|+..|..+
T Consensus 20 i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~ 60 (71)
T PF10686_consen 20 IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPV 60 (71)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCee
Confidence 3445544444447889999999 899999999999998754
No 144
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=84.59 E-value=1.1 Score=42.42 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=63.0
Q ss_pred CCCCccEEEEEEEeCCCCCCCCCCCEEE-EecC-------ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY-GDIN-------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215 (262)
Q Consensus 144 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~-~~~~-------~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~ 215 (262)
..-|+|+++.+.+|+++..+.-.|+.-+ +.+. .....+....+.|++.+ ++++.+..+.. ...
T Consensus 90 ~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~--------~~~k~v~~~t~-i~~ 160 (423)
T PRK00045 90 VHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAF--------SVAKRVRTETG-IGA 160 (423)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------HHHhhHhhhcC-CCC
Confidence 4569999999999999987766666533 1111 00001111122333332 33333332222 122
Q ss_pred chHHHHHHHHHHcC----CCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 216 LAIETAYEGLERTG----FSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 216 ~~~~tA~~al~~~~----~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.+...++.+++.+. -..|++|+|+| +|.+|+++++.++..|+
T Consensus 161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~ 206 (423)
T PRK00045 161 GAVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGV 206 (423)
T ss_pred CCcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence 23445777775432 36789999999 89999999999999987
No 145
>PRK06128 oxidoreductase; Provisional
Probab=83.68 E-value=1.1 Score=39.68 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=26.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.++||.||+|++|...++.....|++|+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~ 83 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIA 83 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEE
Confidence 578999999999999998888888898763
No 146
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.61 E-value=2 Score=39.90 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=24.2
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.+|+|.| +|.+|+.+++.++.+|++|+
T Consensus 167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~ 194 (370)
T TIGR00518 167 PGDVTIIG-GGVVGTNAAKMANGLGATVT 194 (370)
T ss_pred CceEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence 34588988 89999999999999999764
No 147
>PRK07985 oxidoreductase; Provisional
Probab=83.58 E-value=1.2 Score=39.57 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.++||.||+|++|...++.+...|++|+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi 77 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVA 77 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEE
Confidence 567999999999999999888888898874
No 148
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.84 E-value=1.4 Score=39.76 Aligned_cols=30 Identities=17% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+++|.||++++|...++.....|++|.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vi 81 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLV 81 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEE
Confidence 589999999999999998877777888763
No 149
>PLN02494 adenosylhomocysteinase
Probab=81.87 E-value=1.5 Score=41.94 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHH-cCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 222 YEGLER-TGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 222 ~~al~~-~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.++.+ .++ -.|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VI 281 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVI 281 (477)
T ss_pred HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 455543 343 6799999999 99999999999999999874
No 150
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=80.85 E-value=3.2 Score=31.15 Aligned_cols=47 Identities=28% Similarity=0.193 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCC----CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEE
Q 024775 151 AGVVVKVGTQVK----EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201 (262)
Q Consensus 151 vG~Vv~vG~~v~----~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~ 201 (262)
.|+|++||++.. .+++||+|+..-. .|.+-.-.=.+|+++.++.++-
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y----~Gtevk~dg~ey~i~~e~DILa 96 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLPEF----GGSSVKVEGEEFFLYNEDSLLG 96 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEcCC----CCcEEEECCEEEEEEEhHHEEE
Confidence 599999999753 4899999985321 1110000116788877766553
No 151
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.27 E-value=1.9 Score=40.72 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|+++||.|++|++|...++.+...|++|+
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi 238 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVV 238 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999888898874
No 152
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.05 E-value=4.5 Score=36.24 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..++..++ -.|.+|+|.|.+.-+|.-++.++...|++|+
T Consensus 137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence 456666556666666654 3799999999666699999999999999885
No 153
>PRK06701 short chain dehydrogenase; Provisional
Probab=79.91 E-value=2.1 Score=37.88 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...|.++||.||+|++|...++.....|++|+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~ 74 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIA 74 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 34578999999999999998888888898864
No 154
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=79.54 E-value=2.1 Score=40.25 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=26.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++++|.||+|++|.+.++.....|++|.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi 206 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVV 206 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence 478999999999999998888888888764
No 155
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=79.53 E-value=3.7 Score=30.44 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=19.1
Q ss_pred EEEEEEEeCCCCC---------CCCCCCEEEEe
Q 024775 150 VAGVVVKVGTQVK---------EFKEGDEVYGD 173 (262)
Q Consensus 150 ~vG~Vv~vG~~v~---------~~~~Gd~V~~~ 173 (262)
..|+|++||++.. .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 4799999998642 48999999863
No 156
>PLN02572 UDP-sulfoquinovose synthase
Probab=79.49 E-value=2 Score=40.72 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+.+|||.||+|.+|...++.+...|.+|+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~ 75 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVA 75 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 3567899999999999999998888887764
No 157
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=79.16 E-value=1.3 Score=39.35 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++++++++|++||-+| || -|..++.+|+..|++|.
T Consensus 55 ~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~ 89 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVT 89 (273)
T ss_dssp HTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEE
T ss_pred HHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEE
Confidence 3678999999999998 77 58888999999999875
No 158
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=79.11 E-value=4.4 Score=29.91 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEEEeCCCC---------CCCCCCCEEEEe
Q 024775 150 VAGVVVKVGTQV---------KEFKEGDEVYGD 173 (262)
Q Consensus 150 ~vG~Vv~vG~~v---------~~~~~Gd~V~~~ 173 (262)
..|+|++||++. ..+++||+|+..
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP 67 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence 479999999873 359999999853
No 159
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=78.66 E-value=5.3 Score=29.44 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=28.7
Q ss_pred EEEEEEEeCCCCC----CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEE
Q 024775 150 VAGVVVKVGTQVK----EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201 (262)
Q Consensus 150 ~vG~Vv~vG~~v~----~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~ 201 (262)
..|+|+++|++.. .+++||+|+..-. .+.+..-.-.+|++++++.++.
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y----~g~ev~~~~~~y~iv~e~DILa 87 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIFSKY----AGTEIKIDDEDYIIIDVNDILA 87 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEEccC----CCeEEEECCEEEEEEEhHhEEE
Confidence 3699999997542 4899999985321 0100000116788887765543
No 160
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=78.64 E-value=6.7 Score=31.22 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+++.....+..++..++. .|.+|+|+|.+..+|.-.+.++...|++|.
T Consensus 7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~ 56 (140)
T cd05212 7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY 56 (140)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 3455555555556666654 799999999999999999999999999874
No 161
>PLN02686 cinnamoyl-CoA reductase
Probab=78.42 E-value=2.6 Score=38.81 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...+++|||.||+|.+|..+++.+...|.+|+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~ 81 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVR 81 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEE
Confidence 34678999999999999999998888898763
No 162
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.99 E-value=2.7 Score=37.71 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
--.|+.|||.||.+|+|++.++=...+|+++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKL 65 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeE
Confidence 3489999999999999988666555566654
No 163
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=77.40 E-value=2.4 Score=38.28 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..++++++.+|++|.
T Consensus 144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~ 172 (311)
T PRK08410 144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVV 172 (311)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhcCCEEE
Confidence 688999999 99999999999999999874
No 164
>PRK06932 glycerate dehydrogenase; Provisional
Probab=77.37 E-value=2.3 Score=38.47 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..++++++.+|++|+
T Consensus 146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~ 174 (314)
T PRK06932 146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVL 174 (314)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence 478999999 99999999999999999874
No 165
>PLN02206 UDP-glucuronate decarboxylase
Probab=77.30 E-value=2.7 Score=39.96 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.+|||.||+|-+|..+++.+...|.+|+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~ 147 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVI 147 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEE
Confidence 568899999999999999999988887764
No 166
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.26 E-value=7.4 Score=37.36 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.-.|++|+|.| .|.+|..+++.++.+|++|.
T Consensus 251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~Vi 281 (476)
T PTZ00075 251 MIAGKTVVVCG-YGDVGKGCAQALRGFGARVV 281 (476)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 45899999999 99999999999999999874
No 167
>PRK06487 glycerate dehydrogenase; Provisional
Probab=76.19 E-value=2.7 Score=38.15 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=26.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..+++.++.+|++|.
T Consensus 147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~ 175 (317)
T PRK06487 147 EGKTLGLLG-HGELGGAVARLAEAFGMRVL 175 (317)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEE
Confidence 577999999 99999999999999999874
No 168
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=75.82 E-value=3.2 Score=37.08 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=26.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|+|+| .|.+|..+++.++.+|++|+
T Consensus 150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~ 178 (287)
T TIGR02853 150 HGSNVMVLG-FGRTGMTIARTFSALGARVF 178 (287)
T ss_pred CCCEEEEEc-ChHHHHHHHHHHHHCCCEEE
Confidence 578999999 89999999999999999764
No 169
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=75.65 E-value=8.8 Score=31.49 Aligned_cols=49 Identities=20% Similarity=0.126 Sum_probs=34.2
Q ss_pred hcccchHHHHHHHHHHc-CCCCCCEEEEEcCchH-HHHHHHHHHHHcCCccC
Q 024775 212 AGLPLAIETAYEGLERT-GFSAGKSILVLNGSGG-VGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 212 a~l~~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~-vG~~aiqlAk~~Ga~V~ 261 (262)
...|+....+...++.. .--.|.+|+|.| +|. +|..++..++..|++|+
T Consensus 22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG-~G~~~G~~~a~~L~~~g~~V~ 72 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVG-RSNIVGKPLAALLLNRNATVT 72 (168)
T ss_pred CccCChHHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHhhCCCEEE
Confidence 33455544555555543 346899999999 565 69989999999998763
No 170
>PLN02928 oxidoreductase family protein
Probab=75.52 E-value=3.1 Score=38.29 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..+++.++.+|++|+
T Consensus 158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~ 186 (347)
T PLN02928 158 FGKTVFILG-YGAIGIELAKRLRPFGVKLL 186 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEE
Confidence 578999999 99999999999999999874
No 171
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=75.27 E-value=5 Score=32.77 Aligned_cols=50 Identities=22% Similarity=0.132 Sum_probs=34.2
Q ss_pred hcccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 212 AGLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 212 a~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+|+....-+..|+..++ -.|++|+|.|.+..+|.-...+++..|++|.
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt 64 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT 64 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE
Confidence 3345555555555666554 4899999999888999999999999999875
No 172
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=75.16 E-value=6.1 Score=35.08 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=27.9
Q ss_pred HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+|+..+...+++++|+| +||.+++++..++..|++
T Consensus 112 ~~L~~~~~~~~~~vlilG-aGGaarAi~~aL~~~g~~ 147 (272)
T PRK12550 112 KLLASYQVPPDLVVALRG-SGGMAKAVAAALRDAGFT 147 (272)
T ss_pred HHHHhcCCCCCCeEEEEC-CcHHHHHHHHHHHHCCCC
Confidence 344444555567899999 899999999988888874
No 173
>PRK06484 short chain dehydrogenase; Validated
Probab=75.09 E-value=3.4 Score=39.62 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+++||.||++++|+..++.....|++|+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~ 297 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLL 297 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 3678999999999999999988888898874
No 174
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.50 E-value=7.9 Score=34.67 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=39.2
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|.+..+|.-++.++...||+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt 185 (285)
T PRK14191 136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS 185 (285)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE
Confidence 4466665666666766654 799999999777999999999999999885
No 175
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=73.90 E-value=3.5 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=18.4
Q ss_pred CCCCCEEEEEcCchHHHHHH-HHHHHHcCCc
Q 024775 230 FSAGKSILVLNGSGGVGSLV-IQVCYYYLEF 259 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~a-iqlAk~~Ga~ 259 (262)
+...++|||+|++++.|+++ |.+|-..|+.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~ 66 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGAD 66 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--E
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCC
Confidence 43348999999999999984 4444455554
No 176
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=73.73 E-value=4.2 Score=37.82 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+...+.+|||.||+|.+|..+++.+...|.+|+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~ 88 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVV 88 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 345678999999999999999988888887764
No 177
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=73.59 E-value=7.3 Score=36.70 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=64.4
Q ss_pred CCCCccEEEEEEEeCCCCCCCCCCCEEE-Eec-------CccccCCCCCCCceeeEEEecCCCeEE---C-CCCCCHhhH
Q 024775 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY-GDI-------NEKALEGPKQFGSLAEYTAVEERLLAP---K-PKNLDFVQA 211 (262)
Q Consensus 144 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~-~~~-------~~~~~~~~~~~G~~ae~~~v~~~~~~~---l-P~~~~~~~a 211 (262)
..-|.|+++.+.+|++++.+.-.|+.-+ +.+ ......+....+.|++++.++. .+.. + +..++
T Consensus 88 ~~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vS---- 162 (417)
T TIGR01035 88 ILTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVS---- 162 (417)
T ss_pred hcCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcC----
Confidence 3568899999999999988766676643 111 0111222233467888877764 3322 2 22222
Q ss_pred hcccchHHHHHHHH----HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 212 AGLPLAIETAYEGL----ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 212 a~l~~~~~tA~~al----~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.++.++ +..+...|++|+|+| +|.+|..+++.++..|+
T Consensus 163 --------v~~~Av~la~~~~~~l~~~~VlViG-aG~iG~~~a~~L~~~G~ 204 (417)
T TIGR01035 163 --------ISSAAVELAERIFGSLKGKKALLIG-AGEMGELVAKHLLRKGV 204 (417)
T ss_pred --------HHHHHHHHHHHHhCCccCCEEEEEC-ChHHHHHHHHHHHHCCC
Confidence 233332 334557889999999 79999999999999984
No 178
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=4.5 Score=34.49 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccCC
Q 024775 224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS 262 (262)
Q Consensus 224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~~ 262 (262)
.++...+++|++||=+| +|. |..++-+|+..| +|+|
T Consensus 64 m~~~L~~~~g~~VLEIG-tGs-GY~aAvla~l~~-~V~s 99 (209)
T COG2518 64 MLQLLELKPGDRVLEIG-TGS-GYQAAVLARLVG-RVVS 99 (209)
T ss_pred HHHHhCCCCCCeEEEEC-CCc-hHHHHHHHHHhC-eEEE
Confidence 34678999999999998 554 999999999988 7765
No 179
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.01 E-value=7.4 Score=34.84 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|.+..+|.-.+.++...|++|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt 186 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT 186 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 3466655556666666654 799999999888889999999999999885
No 180
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=72.70 E-value=7.4 Score=32.87 Aligned_cols=49 Identities=24% Similarity=0.160 Sum_probs=39.4
Q ss_pred cccchHHHHHHHHHHcCC----------CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF----------SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~----------~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++ -.|++|+|.|-+..+|.=...++...||+|+
T Consensus 32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt 90 (197)
T cd01079 32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY 90 (197)
T ss_pred ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 346666566666666554 5899999999999999999999999999886
No 181
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=72.31 E-value=4.3 Score=38.45 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+|||.||+|-+|..++..+...|.+|+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~ 148 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVI 148 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence 3557899999999999999998888887764
No 182
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.16 E-value=4 Score=37.07 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|.+++|.|+++|+|...+.-+..+|++|+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv 63 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVV 63 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEE
Confidence 3558999999999999999999999999875
No 183
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=71.78 E-value=4.2 Score=40.85 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|+++||.||+|++|...++.....|++|+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vv 442 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVV 442 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999888888898874
No 184
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=70.45 E-value=6.3 Score=35.23 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.9
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++.++++|++||=+| ||- |.+++-+|+..|++|+
T Consensus 65 ~~kl~L~~G~~lLDiG-CGW-G~l~~~aA~~y~v~V~ 99 (283)
T COG2230 65 LEKLGLKPGMTLLDIG-CGW-GGLAIYAAEEYGVTVV 99 (283)
T ss_pred HHhcCCCCCCEEEEeC-CCh-hHHHHHHHHHcCCEEE
Confidence 3679999999999998 887 8889999999999885
No 185
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.30 E-value=12 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.078 Sum_probs=29.5
Q ss_pred HHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 224 GLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 224 al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.++..++ -.|.+|+|.|.+|-+|...+.++...|++|+
T Consensus 149 ~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt 187 (283)
T PRK14192 149 LLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT 187 (283)
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE
Confidence 3444444 5889999999555599999999999999774
No 186
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=70.05 E-value=9.7 Score=35.79 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=37.8
Q ss_pred hhHhcccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 209 VQAAGLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 209 ~~aa~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.++-+..+.+.+- .+++..+. -.|.+|.|.| .|.+|..+++.+...|++|.
T Consensus 183 ~~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvv 234 (411)
T COG0334 183 SEATGYGVFYAIR-EALKALGDDLEGARVAVQG-FGNVGQYAAEKLHELGAKVV 234 (411)
T ss_pred CcccceehHHHHH-HHHHHcCCCcCCCEEEEEC-ccHHHHHHHHHHHHcCCEEE
Confidence 3444444444333 55555555 4999999999 99999999999988899885
No 187
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=70.04 E-value=2.9 Score=31.15 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|..|||.| .|.+|..-++.+...||+|+
T Consensus 6 ~~~~vlVvG-gG~va~~k~~~Ll~~gA~v~ 34 (103)
T PF13241_consen 6 KGKRVLVVG-GGPVAARKARLLLEAGAKVT 34 (103)
T ss_dssp TT-EEEEEE-ESHHHHHHHHHHCCCTBEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 578999999 89999999999999998764
No 188
>PRK06436 glycerate dehydrogenase; Provisional
Probab=70.04 E-value=5.2 Score=36.10 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...+++++.+|++|+
T Consensus 121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~ 149 (303)
T PRK06436 121 YNKSLGILG-YGGIGRRVALLAKAFGMNIY 149 (303)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 689999999 99999999999999999874
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=69.76 E-value=4.9 Score=36.62 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|.+|-|+| .|.+|..+++.++.+|++|.
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~afgm~v~ 169 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAFGMKVI 169 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEE
Confidence 78999999 99999999999999999874
No 190
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=68.99 E-value=6.2 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.3
Q ss_pred HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.+.+++|++||.+| +|. |..++++++..|.
T Consensus 72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~ 101 (272)
T PRK11873 72 LAELKPGETVLDLG-SGG-GFDCFLAARRVGP 101 (272)
T ss_pred hccCCCCCEEEEeC-CCC-CHHHHHHHHHhCC
Confidence 46789999999998 777 9888888888765
No 191
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=68.20 E-value=6.3 Score=35.17 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
..+.+++|+| +|++|++++..+...|++
T Consensus 124 ~~~k~vlI~G-AGGagrAia~~La~~G~~ 151 (289)
T PRK12548 124 VKGKKLTVIG-AGGAATAIQVQCALDGAK 151 (289)
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHHHCCCC
Confidence 3578999999 589999988888888886
No 192
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=67.80 E-value=6.1 Score=36.86 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=27.7
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|.+|.|+| .|.+|..+++.++.+|++|.
T Consensus 114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~ 143 (378)
T PRK15438 114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTL 143 (378)
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 4789999999 99999999999999999874
No 193
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=67.64 E-value=6 Score=37.24 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..+++.++.+|++|+
T Consensus 150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~ 178 (409)
T PRK11790 150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVY 178 (409)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 678999999 99999999999999999874
No 194
>PRK14031 glutamate dehydrogenase; Provisional
Probab=67.38 E-value=12 Score=35.58 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+. -.|.+|+|.| .|.||..+++.+...|++|.
T Consensus 219 ~~~~g~~l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVV 255 (444)
T PRK14031 219 LKTKGTDLKGKVCLVSG-SGNVAQYTAEKVLELGGKVV 255 (444)
T ss_pred HHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 344343 3789999999 89999999999999999985
No 195
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=67.25 E-value=7.5 Score=27.17 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=22.2
Q ss_pred EEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|+|.| +|.+|+-.+..++.+|.+|+
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vt 26 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVT 26 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEE
Confidence 478888 99999999999999988763
No 196
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=67.01 E-value=6.2 Score=37.05 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCCEEEEEcC----------------chHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNG----------------SGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga----------------~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|.+|||.|| +|.+|.+.++.+...|++|+
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~ 232 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVT 232 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEE
Confidence 37899999998 67799999999999999884
No 197
>PRK07201 short chain dehydrogenase; Provisional
Probab=66.91 E-value=6.1 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+++|.||+|++|...+......|++|+
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~~V~ 399 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGATVF 399 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence 367899999999999998888888898764
No 198
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.75 E-value=13 Score=33.39 Aligned_cols=49 Identities=20% Similarity=0.047 Sum_probs=39.4
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..++..++. .|.+|+|.|-+.-+|.-...+++..||+|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt 187 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT 187 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE
Confidence 3466666667777776654 699999999777799999999999999885
No 199
>PRK13243 glyoxylate reductase; Reviewed
Probab=66.73 E-value=6.5 Score=35.88 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.++.+|++|+
T Consensus 149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~ 177 (333)
T PRK13243 149 YGKTIGIIG-FGRIGQAVARRAKGFGMRIL 177 (333)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 578999999 99999999999999999774
No 200
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=66.70 E-value=58 Score=29.63 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=52.7
Q ss_pred EEEEEEeCCCCCCCCCCCEEEEecCcccc---CCCC-CCC--------------ceeeEEEecCCCeEECCCCCCHhhHh
Q 024775 151 AGVVVKVGTQVKEFKEGDEVYGDINEKAL---EGPK-QFG--------------SLAEYTAVEERLLAPKPKNLDFVQAA 212 (262)
Q Consensus 151 vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~---~~~~-~~G--------------~~ae~~~v~~~~~~~lP~~~~~~~aa 212 (262)
-++|++ +.+.++.+|.||+++.+.... .... ..+ .|-+|..+..+.... ......++.
T Consensus 38 fA~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~--~~~e~~~~L 113 (314)
T PF11017_consen 38 FATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD--PEREDWQML 113 (314)
T ss_pred EEEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC--cchhHHHHH
Confidence 367777 888999999999998752110 0000 012 223333333222110 011112222
Q ss_pred cccchHHHHHHHHHHc---CCCCCCEEEEEcCchHHHHHHHHHHH
Q 024775 213 GLPLAIETAYEGLERT---GFSAGKSILVLNGSGGVGSLVIQVCY 254 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~---~~~~g~~VlI~Ga~G~vG~~aiqlAk 254 (262)
.-+ -+.|+|-.-+.. ..-..+.|+|..|++-.++..+.+++
T Consensus 114 lrP-Lf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~ 157 (314)
T PF11017_consen 114 LRP-LFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLK 157 (314)
T ss_pred HHH-HHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhh
Confidence 223 344666443322 34455788999999988888887777
No 201
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=66.67 E-value=14 Score=35.34 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|.+|+|.| .|.||..+++.+..+|++|.
T Consensus 235 l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVV 264 (454)
T PTZ00079 235 LEGKTVVVSG-SGNVAQYAVEKLLQLGAKVL 264 (454)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 3789999999 99999999999999999985
No 202
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=66.49 E-value=9.3 Score=34.74 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+|.+.-.--+.|||++|+.- .|..|+-++.+++.+|++|
T Consensus 80 g~E~al~N~lePgd~vLv~~-~G~wg~ra~D~~~r~ga~V 118 (385)
T KOG2862|consen 80 GWEAALVNLLEPGDNVLVVS-TGTWGQRAADCARRYGAEV 118 (385)
T ss_pred hHHHHHHhhcCCCCeEEEEE-echHHHHHHHHHHhhCcee
Confidence 44443333467999999976 9999999999999999987
No 203
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=66.35 E-value=5.8 Score=36.19 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.++-|+| .|.+|++.++.++..|++|+
T Consensus 145 ~gktvGIiG-~GrIG~avA~r~~~Fgm~v~ 173 (324)
T COG1052 145 RGKTLGIIG-LGRIGQAVARRLKGFGMKVL 173 (324)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence 488999999 99999999999999999864
No 204
>PRK14030 glutamate dehydrogenase; Provisional
Probab=65.90 E-value=15 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=30.2
Q ss_pred HHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+. -.|.+|+|.| .|.||..+++.+..+|++|.
T Consensus 219 ~~~~g~~l~g~~vaIQG-fGnVG~~aA~~L~e~GakvV 255 (445)
T PRK14030 219 LETKGIDIKGKTVAISG-FGNVAWGAATKATELGAKVV 255 (445)
T ss_pred HHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 344444 3689999999 99999999999999999985
No 205
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=65.89 E-value=16 Score=32.19 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+..+. -.|.+|+|.| .|.||+.+++++..+|++|.
T Consensus 30 ~~~~~~l~g~~vaIqG-fGnVG~~~a~~L~e~Gakvv 65 (254)
T cd05313 30 KDRNETLKGKRVAISG-SGNVAQYAAEKLLELGAKVV 65 (254)
T ss_pred HhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 33343 3688999999 99999999999999999875
No 206
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=11 Score=28.08 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=17.3
Q ss_pred EEEEEEeCCCCC---------CCCCCCEEEE
Q 024775 151 AGVVVKVGTQVK---------EFKEGDEVYG 172 (262)
Q Consensus 151 vG~Vv~vG~~v~---------~~~~Gd~V~~ 172 (262)
-|+|++||.+-. .+++||+|+.
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf 67 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLF 67 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEE
Confidence 599999996421 3899999986
No 207
>PRK05855 short chain dehydrogenase; Validated
Probab=65.82 E-value=6.7 Score=37.67 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=25.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.++||.||+|++|...++.+...|++|+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~ 343 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVV 343 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEE
Confidence 467899999999999998888888888764
No 208
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=65.76 E-value=6 Score=35.99 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHH-HcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCY-YYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk-~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|+..++.++ .+|++|+
T Consensus 144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~ 173 (323)
T PRK15409 144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPIL 173 (323)
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEE
Confidence 578999999 9999999999998 8999874
No 209
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=65.63 E-value=7.2 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.++.+|++|+
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~ 163 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLR 163 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 678999999 99999999999999999763
No 210
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.55 E-value=14 Score=33.10 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..++..++. .|.+|+|.|-+.-+|.-.+.++...||+|+
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt 192 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS 192 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE
Confidence 4566665666666776765 899999999777799999999999999875
No 211
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=65.48 E-value=7.4 Score=34.41 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcC-Ccc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYL-EFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V 260 (262)
..+.+++|+| +|++|.+++..++..| .+|
T Consensus 121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V 150 (278)
T PRK00258 121 LKGKRILILG-AGGAARAVILPLLDLGVAEI 150 (278)
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEE
Confidence 4577899999 7999999999999999 444
No 212
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=64.38 E-value=20 Score=26.30 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=18.2
Q ss_pred cEEEEEEEeCC--------CC-CCCCCCCEEEEec
Q 024775 149 DVAGVVVKVGT--------QV-KEFKEGDEVYGDI 174 (262)
Q Consensus 149 e~vG~Vv~vG~--------~v-~~~~~Gd~V~~~~ 174 (262)
...|+|++||+ .+ ..+++||+|+..-
T Consensus 34 ~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T PF00166_consen 34 PNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPK 68 (93)
T ss_dssp EEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEET
T ss_pred cceeEEEEcCCccccCCCcEeeeeeeeccEEeccc
Confidence 45799999999 22 3589999998743
No 213
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.71 E-value=15 Score=32.80 Aligned_cols=49 Identities=24% Similarity=0.157 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|.+..+|.=+..++...||+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt 186 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT 186 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 3466665566666766654 899999999999999999999999999885
No 214
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.50 E-value=16 Score=32.67 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=39.4
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|-+..+|.=+..++...||+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt 186 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT 186 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 3466655566666666654 799999999999999999999999999885
No 215
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.23 E-value=17 Score=32.67 Aligned_cols=49 Identities=18% Similarity=0.023 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++ -.|.+|+|+|-++.+|.-.+.++...|+.|+
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt 186 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT 186 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence 456665556666666555 4799999999999999999999999998875
No 216
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=63.01 E-value=7.7 Score=36.34 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCchHHHHH--HHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSL--VIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~--aiqlAk~~Ga~V 260 (262)
..|+++||.|+++++|++ .++.+ ..|+.|
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~V 69 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADT 69 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeE
Confidence 456899999999999999 45555 788865
No 217
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=62.47 E-value=8.8 Score=35.83 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
--.|.+|.|+| .|.+|..+++.++.+|++|+
T Consensus 113 ~l~gktvGIIG-~G~IG~~va~~l~a~G~~V~ 143 (381)
T PRK00257 113 DLAERTYGVVG-AGHVGGRLVRVLRGLGWKVL 143 (381)
T ss_pred CcCcCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 34789999999 99999999999999999874
No 218
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=62.15 E-value=15 Score=32.55 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+.+++|+| +|+.+.+++..+..+|++
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~~ 150 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGVT 150 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCCC
Confidence 578999999 899999999988888874
No 219
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.09 E-value=17 Score=32.77 Aligned_cols=49 Identities=20% Similarity=0.050 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++. .|.+|.|.|-++.+|.-.+.++...|++|+
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt 187 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT 187 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 4466665566666666654 799999999667999999999999999875
No 220
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=61.94 E-value=15 Score=33.09 Aligned_cols=49 Identities=27% Similarity=0.190 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++...||+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt 195 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT 195 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 4566666666667766544 699999999999999999999999999986
No 221
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=61.80 E-value=9.1 Score=36.53 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+++|+|.| +|..|+.++..++..|.+|.
T Consensus 140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~ 168 (467)
T TIGR01318 140 TGKRVAVIG-AGPAGLACADILARAGVQVV 168 (467)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 678999999 99999999999999998763
No 222
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.19 E-value=16 Score=32.65 Aligned_cols=49 Identities=18% Similarity=0.062 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++ -.|.+|+|.|-+..+|.=...++...||+|+
T Consensus 138 ~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt 187 (284)
T PRK14177 138 YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT 187 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 346655555555666665 4899999999999999999999999999886
No 223
>PRK07574 formate dehydrogenase; Provisional
Probab=60.99 E-value=9.4 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|+.+++.++.+|++|+
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~ 219 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLH 219 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 578999999 99999999999999999874
No 224
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=60.65 E-value=18 Score=32.33 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
..+.+++|+| +||.+++++..+..+|++
T Consensus 125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~ 152 (283)
T PRK14027 125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQ 152 (283)
T ss_pred cCCCeEEEEC-CcHHHHHHHHHHHHCCCC
Confidence 3478899999 899999988888888873
No 225
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.65 E-value=16 Score=32.77 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+........|+..++. .|..|+|.|-++.+|.-.+.++...|++|+
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt 186 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT 186 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE
Confidence 3456655556666666654 799999999889999999999999999875
No 226
>PLN02477 glutamate dehydrogenase
Probab=60.49 E-value=21 Score=33.76 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 225 LERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 225 l~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+. -.|.+|+|.| .|.||+.+++++...|++|.
T Consensus 197 ~~~~g~~l~g~~VaIqG-fGnVG~~~A~~L~e~GakVV 233 (410)
T PLN02477 197 LAEHGKSIAGQTFVIQG-FGNVGSWAAQLIHEKGGKIV 233 (410)
T ss_pred HHHcCCCccCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 344333 3688999998 99999999999999999885
No 227
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.10 E-value=17 Score=32.47 Aligned_cols=49 Identities=18% Similarity=0.063 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|..|+|.|.+..+|.=++.++...||+|.
T Consensus 137 ~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt 186 (282)
T PRK14180 137 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT 186 (282)
T ss_pred cCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 4566665566666665553 799999999999999999999999999885
No 228
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=59.94 E-value=9.9 Score=37.93 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|+|+| +|+.|+.++..++..|.+|.
T Consensus 326 ~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~ 354 (654)
T PRK12769 326 SDKRVAIIG-AGPAGLACADVLARNGVAVT 354 (654)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 588999999 99999999999999998763
No 229
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=59.91 E-value=10 Score=34.52 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.++..|++|+
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~ 173 (330)
T PRK12480 145 KNMTVAIIG-TGRIGAATAKIYAGFGATIT 173 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 567899999 99999999999999999874
No 230
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.61 E-value=20 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|.+..+|.=.+.+....||+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt 185 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD 185 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 3466655556666666654 899999999888999999999999999874
No 231
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=59.40 E-value=10 Score=34.53 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
++.+.+-+.--.++.|+|.| +|++|..++.++...|++
T Consensus 62 aFfGee~m~kl~~syVVVVG-~GgVGSwv~nmL~RSG~q 99 (430)
T KOG2018|consen 62 AFFGEEGMEKLTNSYVVVVG-AGGVGSWVANMLLRSGVQ 99 (430)
T ss_pred hhhhhhHHHHhcCcEEEEEe-cCchhHHHHHHHHHhcCc
Confidence 45555545555678899998 999999999999988874
No 232
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=58.90 E-value=21 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.+.+++|+| +|+.+++++..+..+|+
T Consensus 123 ~~k~vlvlG-aGGaarAi~~~l~~~g~ 148 (288)
T PRK12749 123 KGKTMVLLG-AGGASTAIGAQGAIEGL 148 (288)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC
Confidence 667999999 78889887776667776
No 233
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=58.87 E-value=9.8 Score=37.98 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=26.0
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~ 261 (262)
.+++.+|||+||+|-+|..+++.+... |.+|+
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~ 344 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVY 344 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEE
Confidence 567889999999999999999877764 55553
No 234
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=58.79 E-value=13 Score=33.15 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
..+.+|+|+| +|++|.+++..+...|+
T Consensus 125 ~~~k~vlIlG-aGGaaraia~aL~~~G~ 151 (284)
T PRK12549 125 ASLERVVQLG-AGGAGAAVAHALLTLGV 151 (284)
T ss_pred ccCCEEEEEC-CcHHHHHHHHHHHHcCC
Confidence 3568899999 99999999999998987
No 235
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.64 E-value=22 Score=31.86 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++ -.|.+|+|.|-+.-+|.=+..++...||+|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt 184 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT 184 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 346666556666666665 4799999999999999999999999999885
No 236
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.56 E-value=22 Score=31.93 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=39.4
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|.+..+|.=+..++...||+|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt 183 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT 183 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 3466655566666666664 799999999999999999999999999885
No 237
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=58.35 E-value=23 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.4
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
...+.+++|+| +|++|.+++..+...|++|
T Consensus 114 ~~~~k~vliiG-aGg~g~aia~~L~~~g~~v 143 (270)
T TIGR00507 114 LRPNQRVLIIG-AGGAARAVALPLLKADCNV 143 (270)
T ss_pred CccCCEEEEEc-CcHHHHHHHHHHHHCCCEE
Confidence 34578999999 6999999888888888765
No 238
>PLN02306 hydroxypyruvate reductase
Probab=57.84 E-value=10 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHH-HcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCY-YYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk-~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|..+++.++ .+|++|.
T Consensus 164 ~gktvGIiG-~G~IG~~vA~~l~~~fGm~V~ 193 (386)
T PLN02306 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLI 193 (386)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEE
Confidence 578999999 9999999999974 8999874
No 239
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.49 E-value=22 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.169 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++. .|.+|+|.|-+..+|.=...++...||+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT 185 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 3566665566666666654 799999999999999999999999999885
No 240
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=57.39 E-value=17 Score=25.93 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYL 257 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G 257 (262)
-.+.+++|.| +|.+|..+++.+...+
T Consensus 21 ~~~~~v~i~G-~G~~g~~~a~~l~~~~ 46 (86)
T cd05191 21 LKGKTVVVLG-AGEVGKGIAKLLADEG 46 (86)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC
Confidence 4678999999 6999999999888874
No 241
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=56.84 E-value=12 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=27.7
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC--CccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL--EFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--a~V~ 261 (262)
+.+..+.++++|+-.| +|. |..++++|+..+ .+|+
T Consensus 33 l~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~ 69 (198)
T PRK00377 33 LSKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVY 69 (198)
T ss_pred HHHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEE
Confidence 3567899999999998 777 999999988764 3453
No 242
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.18 E-value=24 Score=31.79 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++...||+|+
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt 188 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT 188 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE
Confidence 3455555556666665544 799999999999999999999999999885
No 243
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.16 E-value=24 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++ -.|.+|+|.|-+.-+|.=+..++...||+|+
T Consensus 136 ~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (282)
T PRK14166 136 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS 185 (282)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 346666566666676665 4899999999999999999999999999885
No 244
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=56.01 E-value=12 Score=36.40 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.+++|.| +|++|.+++..+...|++|+
T Consensus 378 ~~k~vlIlG-aGGagrAia~~L~~~G~~V~ 406 (529)
T PLN02520 378 AGKLFVVIG-AGGAGKALAYGAKEKGARVV 406 (529)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence 467899999 68999999999999998653
No 245
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.52 E-value=12 Score=37.20 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=26.0
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|+|+| +|..|+.++..++.+|.+|.
T Consensus 309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vt 337 (639)
T PRK12809 309 RSEKVAVIG-AGPAGLGCADILARAGVQVD 337 (639)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCcEE
Confidence 489999999 99999999999999998763
No 246
>PRK09414 glutamate dehydrogenase; Provisional
Probab=55.07 E-value=28 Score=33.24 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 224 GLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 224 al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++..+. -.|.+|+|.| -|.||+.+++++...|++|.
T Consensus 222 ~~~~~~~~l~g~rVaIqG-fGnVG~~~A~~L~~~GakVV 259 (445)
T PRK09414 222 MLKARGDSFEGKRVVVSG-SGNVAIYAIEKAQQLGAKVV 259 (445)
T ss_pred HHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 3344443 3789999999 99999999999999999885
No 247
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=54.53 E-value=18 Score=32.20 Aligned_cols=51 Identities=29% Similarity=0.215 Sum_probs=44.2
Q ss_pred hcccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccCC
Q 024775 212 AGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFFS 262 (262)
Q Consensus 212 a~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~~ 262 (262)
..+|+....-|..|++.++. .|++++|.|=+-.+|+=.+.|+..-|+++||
T Consensus 144 ~~lPcTP~gv~eiL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~ 195 (309)
T KOG0089|consen 144 LFLPCTPLGVVEILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYS 195 (309)
T ss_pred cccCCchHHHHHHHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccc
Confidence 36677777788888888765 8999999998999999999999999999986
No 248
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.50 E-value=26 Score=31.40 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++ -.|..|+|.|-+.-+|.=...++...||+|+
T Consensus 138 ~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt 187 (288)
T PRK14171 138 FIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT 187 (288)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 346665555666666665 4799999999999999999999999999885
No 249
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.44 E-value=26 Score=31.63 Aligned_cols=48 Identities=17% Similarity=0.009 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 214 LPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 214 l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++...||+|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt 186 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT 186 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 455555555556666654 799999999999999999999999999885
No 250
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=54.35 E-value=11 Score=33.97 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCchHHHHH-HHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSL-VIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~-aiqlAk~~Ga~V~ 261 (262)
+.|++.+|.||+.++|.. +-+||| +|.+|+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvv 77 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVV 77 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCEEE
Confidence 467999999999999977 667777 887764
No 251
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=53.99 E-value=16 Score=31.93 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.8
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+.+-..++|+| +|.+++..+++|+.+|.+|.
T Consensus 95 ~~~~p~~~L~IfG-aG~va~~la~la~~lGf~V~ 127 (246)
T TIGR02964 95 TEAPPAPHVVLFG-AGHVGRALVRALAPLPCRVT 127 (246)
T ss_pred hccCCCCEEEEEC-CcHHHHHHHHHHhcCCCEEE
Confidence 3456778999999 99999999999999999873
No 252
>PLN03139 formate dehydrogenase; Provisional
Probab=53.83 E-value=14 Score=34.54 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.++.+|++|.
T Consensus 198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~ 226 (386)
T PLN03139 198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLL 226 (386)
T ss_pred CCCEEEEEe-ecHHHHHHHHHHHHCCCEEE
Confidence 678999999 99999999999999999874
No 253
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=53.47 E-value=14 Score=34.92 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
....-.+|+|.||+|.+|+..++.++.+|-.|
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~v 106 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSV 106 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCee
Confidence 34455789999999999999999999999654
No 254
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=53.26 E-value=22 Score=33.28 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..++.+.-..-+.+||+|||.- .|..|.--.++|+.+|+.|.
T Consensus 66 t~amEAav~sl~~pgdkVLv~~-nG~FG~R~~~ia~~~g~~v~ 107 (383)
T COG0075 66 TLAMEAAVASLVEPGDKVLVVV-NGKFGERFAEIAERYGAEVV 107 (383)
T ss_pred HHHHHHHHHhccCCCCeEEEEe-CChHHHHHHHHHHHhCCceE
Confidence 3455555455678999999997 99999999999999999763
No 255
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.76 E-value=31 Score=30.90 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=38.5
Q ss_pred ccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 214 LPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 214 l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++...+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt 185 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT 185 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 466655556666666654 899999999999999999999999999885
No 256
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=52.08 E-value=19 Score=33.61 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=31.0
Q ss_pred HHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 220 TAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 220 tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+..+ ++.++++|++||-+| + |.|..+..+++..|++|+
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~ 194 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVV 194 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEE
Confidence 344444 567899999999998 6 468888999998888774
No 257
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=51.47 E-value=20 Score=32.03 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
..|++++|.| +||.+.+++.-++..|+
T Consensus 124 ~~~~~vlilG-AGGAarAv~~aL~~~g~ 150 (283)
T COG0169 124 VTGKRVLILG-AGGAARAVAFALAEAGA 150 (283)
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHHHcCC
Confidence 4689999999 99999999999999996
No 258
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=51.03 E-value=20 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=23.3
Q ss_pred HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.++...+++|++||-.| +|. |..++-+|+..|.
T Consensus 64 ~l~~L~l~pg~~VLeIG-tGs-GY~aAlla~lvg~ 96 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIG-TGS-GYQAALLAHLVGP 96 (209)
T ss_dssp HHHHTTC-TT-EEEEES--TT-SHHHHHHHHHHST
T ss_pred HHHHHhcCCCCEEEEec-CCC-cHHHHHHHHhcCc
Confidence 34667899999999998 443 7888888887764
No 259
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.04 E-value=19 Score=34.33 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+.+..|+|.| +|..|+.++..++..|.+|+
T Consensus 141 ~~~~~VvIIG-aGpAGl~aA~~l~~~G~~V~ 170 (471)
T PRK12810 141 RTGKKVAVVG-SGPAGLAAADQLARAGHKVT 170 (471)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCCcEE
Confidence 4578999999 89999999999999988763
No 260
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=49.93 E-value=37 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.1
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.++|++||-.| +|. |..++.+++ +|+
T Consensus 157 ~~~g~~VLDvG-cGs-G~lai~aa~-~g~ 182 (288)
T TIGR00406 157 DLKDKNVIDVG-CGS-GILSIAALK-LGA 182 (288)
T ss_pred cCCCCEEEEeC-CCh-hHHHHHHHH-cCC
Confidence 56789999998 777 888877776 454
No 261
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.04 E-value=32 Score=30.71 Aligned_cols=49 Identities=20% Similarity=0.063 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|-+..+|.-...+....|++|+
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt 180 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT 180 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE
Confidence 3466655566666666654 799999999788999999999999999875
No 262
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=48.79 E-value=29 Score=27.13 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=23.2
Q ss_pred HcCCCCCCEEEEEcCchHH--HHHHHHHHHHcCCccC
Q 024775 227 RTGFSAGKSILVLNGSGGV--GSLVIQVCYYYLEFFF 261 (262)
Q Consensus 227 ~~~~~~g~~VlI~Ga~G~v--G~~aiqlAk~~Ga~V~ 261 (262)
..++++||.++++..+|.- =..+++.||.+|++|.
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Confidence 4568999999888655543 4669999999999874
No 263
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.60 E-value=37 Score=30.44 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHH--cCCccC
Q 024775 214 LPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYY--YLEFFF 261 (262)
Q Consensus 214 l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~--~Ga~V~ 261 (262)
.|+.....+..|+..++. .|.+++|.|.+..+|.=...++.. .+|+|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt 188 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT 188 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE
Confidence 466665666666766654 699999999999999998888887 788774
No 264
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=48.59 E-value=19 Score=41.87 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCCCEEEEEcCchHHHHH-HHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSL-VIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~-aiqlAk~~Ga~V~ 261 (262)
+..|+++||.||++|+|.. +..|++..|++|+
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~vi 2026 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFI 2026 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 5578899999999999986 5666666678763
No 265
>PRK12831 putative oxidoreductase; Provisional
Probab=48.32 E-value=21 Score=34.06 Aligned_cols=30 Identities=20% Similarity=0.030 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
...+..|+|+| +|..|+.++..++.+|.+|
T Consensus 137 ~~~~~~V~IIG-~GpAGl~aA~~l~~~G~~V 166 (464)
T PRK12831 137 EKKGKKVAVIG-SGPAGLTCAGDLAKMGYDV 166 (464)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHhCCCeE
Confidence 35688999999 8999999998888889876
No 266
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=47.96 E-value=20 Score=32.23 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH--cCCCCCCEEEEEcC
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER--TGFSAGKSILVLNG 241 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~--~~~~~g~~VlI~Ga 241 (262)
+++|++.+... .|.+|-.-+...++.+..++.| +....-.|.. +|+. .-.++|++||=.|
T Consensus 108 ~~vg~~~~I~P------------~w~~~~~~~~~~~I~idPg~AF----GTG~H~TT~l-cl~~l~~~~~~g~~vLDvG- 169 (295)
T PF06325_consen 108 IRVGDRLVIVP------------SWEEYPEPPDEIVIEIDPGMAF----GTGHHPTTRL-CLELLEKYVKPGKRVLDVG- 169 (295)
T ss_dssp EEECTTEEEEE------------TT----SSTTSEEEEESTTSSS-----SSHCHHHHH-HHHHHHHHSSTTSEEEEES-
T ss_pred EEECCcEEEEC------------CCcccCCCCCcEEEEECCCCcc----cCCCCHHHHH-HHHHHHHhccCCCEEEEeC-
Confidence 56787655543 3555522234455666655533 2223332222 3332 2367889998887
Q ss_pred chHHHHHHHHHHHHcCCc
Q 024775 242 SGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga~ 259 (262)
+|. |.+++..+|. ||+
T Consensus 170 ~GS-GILaiaA~kl-GA~ 185 (295)
T PF06325_consen 170 CGS-GILAIAAAKL-GAK 185 (295)
T ss_dssp -TT-SHHHHHHHHT-TBS
T ss_pred CcH-HHHHHHHHHc-CCC
Confidence 554 7777666664 663
No 267
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=47.76 E-value=19 Score=35.05 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.++.+|++|+
T Consensus 139 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~ 167 (526)
T PRK13581 139 YGKTLGIIG-LGRIGSEVAKRAKAFGMKVI 167 (526)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 478999999 99999999999999999874
No 268
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=47.72 E-value=21 Score=35.68 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..++.|+|+| +|..|+.++..+...|.+|+
T Consensus 191 ~~~k~VaIIG-aGpAGl~aA~~La~~G~~Vt 220 (652)
T PRK12814 191 KSGKKVAIIG-AGPAGLTAAYYLLRKGHDVT 220 (652)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 4578999999 99999999999999998763
No 269
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.24 E-value=41 Score=30.20 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHc----CCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYY----LEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~----Ga~V~ 261 (262)
.+|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++... +|+|+
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt 185 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT 185 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE
Confidence 4466665566666665543 6999999999999999999999888 67775
No 270
>PRK13984 putative oxidoreductase; Provisional
Probab=46.82 E-value=23 Score=34.93 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.+.++.|+|.| +|..|+.++..++.+|.+|
T Consensus 280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v 309 (604)
T PRK13984 280 EKKNKKVAIVG-SGPAGLSAAYFLATMGYEV 309 (604)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCeE
Confidence 45789999999 9999999999999999865
No 271
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.37 E-value=27 Score=31.82 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.3
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+.++-..|+|.|++.++|++.+..++..|+.|.
T Consensus 28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vt 61 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSGLGLALALECKREGADVT 61 (331)
T ss_pred cccCccceEEEecCcchhhHHHHHHHHHccCceE
Confidence 4555558999999999999999999999999763
No 272
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=46.34 E-value=22 Score=31.02 Aligned_cols=43 Identities=28% Similarity=0.213 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 217 AIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 217 ~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+-.++..+ ...--.|.+|+|.| .|.+|..+++.+..+|+++.
T Consensus 17 ~~~~~~~~~-~~~~l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv 59 (244)
T PF00208_consen 17 AIEAALEHL-GGDSLEGKRVAIQG-FGNVGSHAARFLAELGAKVV 59 (244)
T ss_dssp HHHHHHHHT-TCHSSTTCEEEEEE-SSHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHc-CCCCcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 333444443 22345679999999 89999999999999998763
No 273
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=46.31 E-value=34 Score=32.86 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=24.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.+.+++|.| +|++|.+++..+...|+++
T Consensus 331 ~~k~vlIiG-aGgiG~aia~~L~~~G~~V 358 (477)
T PRK09310 331 NNQHVAIVG-AGGAAKAIATTLARAGAEL 358 (477)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEE
Confidence 567899999 7999999999888888865
No 274
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.24 E-value=38 Score=30.52 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHc----CCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYY----LEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~----Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|-+..+|.=.+.++... +|+|+
T Consensus 140 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt 193 (297)
T PRK14168 140 FLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT 193 (297)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE
Confidence 4566665566666666654 8999999999999999999999887 67774
No 275
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=46.04 E-value=22 Score=34.62 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|.|+| .|.+|...++.++.+|++|+
T Consensus 137 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~ 165 (525)
T TIGR01327 137 YGKTLGVIG-LGRIGSIVAKRAKAFGMKVL 165 (525)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 578999999 99999999999999999774
No 276
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.36 E-value=41 Score=31.22 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+|+........|+..++. .|++|+|.|-+.-+|.=+..++...+|+|+
T Consensus 210 f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT 259 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS 259 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE
Confidence 3466655555666665554 899999999999999999999999999885
No 277
>PRK08605 D-lactate dehydrogenase; Validated
Probab=45.17 E-value=22 Score=32.38 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHH-HHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVC-YYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlA-k~~Ga~V~ 261 (262)
.|.+|.|+| .|.+|...++.+ +.+|++|+
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~ 174 (332)
T PRK08605 145 KDLKVAVIG-TGRIGLAVAKIFAKGYGSDVV 174 (332)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEE
Confidence 578999999 999999988887 67788764
No 278
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.79 E-value=45 Score=30.08 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHc----CCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYY----LEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~----Ga~V~ 261 (262)
..|+.....+..|+..++ -.|.+|+|.|-+.-+|.=++.++... +|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (297)
T PRK14167 136 FKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT 189 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE
Confidence 346666556666676665 48999999999999999999998877 78775
No 279
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.59 E-value=40 Score=30.22 Aligned_cols=49 Identities=27% Similarity=0.137 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHH----cCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYY----YLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~----~Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+++|.|-+.-+|.=...++.. .+|+|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt 189 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT 189 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE
Confidence 3466665566666666654 799999999999999999999988 788875
No 280
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=43.04 E-value=25 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCc----------------hHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGS----------------GGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~----------------G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|.+|||.||. |.+|.+.++.+..+|++|.
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~ 229 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVT 229 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEE
Confidence 578999999983 4599999999999999874
No 281
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=42.81 E-value=29 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
..+++|+|.| +|..|+.++..++..|.+|
T Consensus 141 ~~~~~V~IIG-aG~aGl~aA~~L~~~g~~V 169 (485)
T TIGR01317 141 RTGKKVAVVG-SGPAGLAAADQLNRAGHTV 169 (485)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCeE
Confidence 4578999999 8999999999998888765
No 282
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=42.53 E-value=46 Score=30.66 Aligned_cols=49 Identities=22% Similarity=0.083 Sum_probs=38.7
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+........|+..++ -.|.+|+|.|-+.-+|.=+..++...||+|+
T Consensus 193 ~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT 242 (345)
T PLN02897 193 FVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS 242 (345)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE
Confidence 346665555666666665 4799999999999999999999999999875
No 283
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=42.32 E-value=32 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.2
Q ss_pred cCCCCCCEEEEE--cCchHHHHHHHHHHHHcCCc
Q 024775 228 TGFSAGKSILVL--NGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 228 ~~~~~g~~VlI~--Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
..++.|++|+|| ||.|-.|+.|+.++..+|..
T Consensus 128 ~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~ 161 (168)
T PF05706_consen 128 ARLENGRKVLVHCRGGLGRTGLVAACLLLELGDT 161 (168)
T ss_dssp HHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SS
T ss_pred HHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 457789999998 88999999999998887753
No 284
>PRK12831 putative oxidoreductase; Provisional
Probab=41.64 E-value=30 Score=33.00 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...|++|+|+| .|.+|.-++..+..+|++|+
T Consensus 278 ~~~gk~VvVIG-gG~va~d~A~~l~r~Ga~Vt 308 (464)
T PRK12831 278 IKVGKKVAVVG-GGNVAMDAARTALRLGAEVH 308 (464)
T ss_pred ccCCCeEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 46789999999 89999999999999998763
No 285
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=41.54 E-value=39 Score=27.93 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.8
Q ss_pred CCCCCCEEEEE---cCchHHHHHHHHHHHHcCCccC
Q 024775 229 GFSAGKSILVL---NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 229 ~~~~g~~VlI~---Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+++|++|+|. -++|+.-.+.+++...+|++|.
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vv 147 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVV 147 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEE
Confidence 45699999987 3588999999999999999863
No 286
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=41.21 E-value=31 Score=23.50 Aligned_cols=22 Identities=9% Similarity=-0.147 Sum_probs=17.6
Q ss_pred EEcCchHHHHHHHHHHHHcCCcc
Q 024775 238 VLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 238 I~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
|.| +|..|+.++..++..|.+|
T Consensus 1 IiG-aG~sGl~aA~~L~~~g~~v 22 (68)
T PF13450_consen 1 IIG-AGISGLAAAYYLAKAGYRV 22 (68)
T ss_dssp EES--SHHHHHHHHHHHHTTSEE
T ss_pred CEe-eCHHHHHHHHHHHHCCCcE
Confidence 567 8999999888888888776
No 287
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=41.19 E-value=31 Score=34.34 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+..+|||+||+|-+|...++.+...|.+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v 407 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAY 407 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeE
Confidence 45679999999999999999888878665
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.90 E-value=33 Score=32.52 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+..|+|.| +|..|+.++..++..|.+|.
T Consensus 131 ~~~~~V~IIG-~G~aGl~aA~~l~~~G~~V~ 160 (449)
T TIGR01316 131 STHKKVAVIG-AGPAGLACASELAKAGHSVT 160 (449)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCcEE
Confidence 3577899999 89999999888888887763
No 289
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=40.39 E-value=46 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=30.8
Q ss_pred HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...+.||.++||-.-+|..|...+-+|..+|.+++
T Consensus 97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i 131 (362)
T KOG1252|consen 97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCI 131 (362)
T ss_pred cCCccCCceEEEecCCCchHHHHHHHHHHcCceEE
Confidence 45799999999999899999999999999998764
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.35 E-value=32 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...|++|+|+| .|.+|+-++..+..+|++|+
T Consensus 269 ~~~gk~VvVIG-gG~~a~d~A~~l~~~G~~Vt 299 (449)
T TIGR01316 269 VYAGKSVVVIG-GGNTAVDSARTALRLGAEVH 299 (449)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 35789999999 89999999999999998763
No 291
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=39.98 E-value=72 Score=30.13 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.5
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+--.|.+|+|+| +|++|.+++..+...|+.
T Consensus 176 ~~~l~~kkvlviG-aG~~a~~va~~L~~~g~~ 206 (414)
T PRK13940 176 LDNISSKNVLIIG-AGQTGELLFRHVTALAPK 206 (414)
T ss_pred hcCccCCEEEEEc-CcHHHHHHHHHHHHcCCC
Confidence 3445678999999 899999999988888863
No 292
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=39.85 E-value=29 Score=33.45 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=21.3
Q ss_pred EEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-|+|.| +|..|++++.-|+..|++|.
T Consensus 63 DVvVVG-~G~AGl~AAi~Aa~~Ga~Vi 88 (506)
T PRK06481 63 DIVIVG-AGGAGMSAAIEAKDAGMNPV 88 (506)
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEE
Confidence 378888 89999988888888888773
No 293
>PRK14982 acyl-ACP reductase; Provisional
Probab=39.70 E-value=39 Score=31.08 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHH
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYY 255 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~ 255 (262)
-.+.+|+|.||+|.+|..+++.+..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~ 177 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDA 177 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHh
Confidence 4678999999889999988777753
No 294
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=39.50 E-value=32 Score=34.66 Aligned_cols=30 Identities=13% Similarity=-0.112 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.++...|+|.| +|..|++++..++..|.+|
T Consensus 78 ~~~~~~VlIVG-gGIaGLalAlaL~r~Gi~V 107 (668)
T PLN02927 78 KKKKSRVLVAG-GGIGGLVFALAAKKKGFDV 107 (668)
T ss_pred ccCCCCEEEEC-CCHHHHHHHHHHHhcCCeE
Confidence 46777899999 9999999999999899876
No 295
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.07 E-value=62 Score=29.15 Aligned_cols=49 Identities=22% Similarity=0.093 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHc----CCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYY----LEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~----Ga~V~ 261 (262)
..|+.....+..|+..++. .|.+|+|.|-+.-+|.=...++... +|+|.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT 189 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE
Confidence 3466665566666666654 8999999999999999999999887 57663
No 296
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=38.75 E-value=42 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC--CccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL--EFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--a~V~ 261 (262)
++...+++|++||-.| +|. |..+..+++..+ ++|+
T Consensus 69 ~~~l~~~~g~~VLdIG-~Gs-G~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 69 CELLDLKEGMKVLEIG-TGS-GYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHHcCCCCcCEEEEEC-Ccc-cHHHHHHHHhcCCCCEEE
Confidence 3567889999999998 444 777777777765 3554
No 297
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=38.06 E-value=59 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=27.9
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
++..+++|+ .+|-+-+|..|...+.+|+.+|.++
T Consensus 55 ~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~ 88 (300)
T COG0031 55 KRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRL 88 (300)
T ss_pred HcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcE
Confidence 456699999 5566779999999999999999875
No 298
>PTZ00188 adrenodoxin reductase; Provisional
Probab=37.96 E-value=39 Score=32.79 Aligned_cols=29 Identities=3% Similarity=-0.103 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCchHHHHHHHH-HHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQ-VCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiq-lAk~~Ga~V 260 (262)
....+|+|.| +|+.|+.++. +++..|.+|
T Consensus 37 ~~~krVAIVG-aGPAGlyaA~~Ll~~~g~~V 66 (506)
T PTZ00188 37 AKPFKVGIIG-AGPSALYCCKHLLKHERVKV 66 (506)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhcCCeE
Confidence 3567899999 9999999866 777777765
No 299
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=37.53 E-value=31 Score=33.29 Aligned_cols=27 Identities=15% Similarity=-0.046 Sum_probs=23.3
Q ss_pred CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 234 KSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
-.|+|.| +|..|+.++..++.+|.+|.
T Consensus 212 ~dvvIIG-gGpaGl~aA~~la~~G~~v~ 238 (517)
T PRK15317 212 YDVLVVG-GGPAGAAAAIYAARKGIRTG 238 (517)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 4688888 99999999999999998763
No 300
>PLN00016 RNA-binding protein; Provisional
Probab=37.44 E-value=24 Score=32.34 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.9
Q ss_pred CCCEEEEE----cCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVL----NGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~----Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...+|||+ ||+|.+|..++..+...|.+|+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~ 84 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVT 84 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEE
Confidence 34679999 9999999999888888887653
No 301
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=36.65 E-value=35 Score=35.82 Aligned_cols=30 Identities=17% Similarity=-0.029 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|.+|+|.| +|+.|+.++..+...|.+|.
T Consensus 304 ~~gkkVaVIG-sGPAGLsaA~~Lar~G~~Vt 333 (944)
T PRK12779 304 AVKPPIAVVG-SGPSGLINAYLLAVEGFPVT 333 (944)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 3589999999 99999999988888887663
No 302
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.59 E-value=73 Score=28.54 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=39.2
Q ss_pred cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..||.....+..++..++ -.|.+++|.|.+--+|.=..+++...+++|.
T Consensus 135 ~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt 184 (283)
T COG0190 135 FLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT 184 (283)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE
Confidence 345666566666777666 4899999999888999999999999999874
No 303
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=35.25 E-value=36 Score=32.39 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.7
Q ss_pred EEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|+|.| +|+.|.+++..+...|.+|.
T Consensus 41 DViIVG-aGPAG~~aA~~LA~~G~~Vl 66 (450)
T PLN00093 41 RVAVIG-GGPAGACAAETLAKGGIETF 66 (450)
T ss_pred eEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 588888 99999998888888888763
No 304
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=34.99 E-value=40 Score=31.15 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+..+++|+|.| .|.+|+-++..++.+|.+|+
T Consensus 141 ~~~~~~vvViG-gG~ig~E~A~~l~~~g~~Vt 171 (396)
T PRK09754 141 LQPERSVVIVG-AGTIGLELAASATQRRCKVT 171 (396)
T ss_pred hhcCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 45678999998 89999988888888888763
No 305
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=34.30 E-value=60 Score=30.11 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
++..+.+|.+.+|...+|..|++++.+|+.+|.++
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~ 137 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKM 137 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCE
Confidence 34557889777888889999999999999999875
No 306
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=34.25 E-value=54 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.3
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
..+|+|.| +|++|..++..+...|.
T Consensus 32 ~~~VliiG-~GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVG-LGGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCC
Confidence 36789998 89999998888888886
No 307
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=33.67 E-value=45 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
..+.+|+|.| +|..|+.++..+...|.+|
T Consensus 138 ~~~~~VvIIG-gGpaGl~aA~~l~~~g~~V 166 (457)
T PRK11749 138 KTGKKVAVIG-AGPAGLTAAHRLARKGYDV 166 (457)
T ss_pred cCCCcEEEEC-CCHHHHHHHHHHHhCCCeE
Confidence 4567899999 8999999888888888765
No 308
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=33.50 E-value=43 Score=35.45 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..|+.|+|+| +|+.|+.++..++..|.+|.
T Consensus 537 ~tgKkVaIIG-gGPAGLsAA~~Lar~G~~Vt 566 (1019)
T PRK09853 537 GSRKKVAVIG-AGPAGLAAAYFLARAGHPVT 566 (1019)
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 4578899999 99999999999988897763
No 309
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.36 E-value=87 Score=28.21 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHH----cCCccC
Q 024775 213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYY----YLEFFF 261 (262)
Q Consensus 213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~----~Ga~V~ 261 (262)
.+|+.....+..++..++. .|.+|+|.|.+.-+|.=...++.. .+++|+
T Consensus 138 ~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt 191 (295)
T PRK14174 138 FVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT 191 (295)
T ss_pred cCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE
Confidence 4456555555566666654 799999999999999987777765 577764
No 310
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=33.09 E-value=47 Score=35.04 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
..|.+|+|.| +|+.|+.++..+...|.+|
T Consensus 381 ~tgKKVaVVG-aGPAGLsAA~~La~~Gh~V 409 (1028)
T PRK06567 381 PTNYNILVTG-LGPAGFSLSYYLLRSGHNV 409 (1028)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCeE
Confidence 4688999999 9999999998888889876
No 311
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=33.02 E-value=47 Score=33.74 Aligned_cols=29 Identities=21% Similarity=0.051 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
..+..|+|+| +|..|+.++..+...|.+|
T Consensus 429 ~~~~~V~IIG-aGpAGl~aA~~l~~~G~~V 457 (752)
T PRK12778 429 KNGKKVAVIG-SGPAGLSFAGDLAKRGYDV 457 (752)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCeE
Confidence 3578899999 8999999999988888876
No 312
>PRK14967 putative methyltransferase; Provisional
Probab=32.62 E-value=64 Score=27.24 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=24.9
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
+....++++++||-.| +|. |..++.+++. |+ +|
T Consensus 29 l~~~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v 62 (223)
T PRK14967 29 LAAEGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSV 62 (223)
T ss_pred HHhcccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeE
Confidence 4456688899999998 776 8888888875 44 44
No 313
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=53 Score=24.68 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=18.6
Q ss_pred CccEEEEEEEeCCCCC---------CCCCCCEEEE
Q 024775 147 GYDVAGVVVKVGTQVK---------EFKEGDEVYG 172 (262)
Q Consensus 147 G~e~vG~Vv~vG~~v~---------~~~~Gd~V~~ 172 (262)
+-...|+|++||++.. ..++||+|.-
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLl 75 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLL 75 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEe
Confidence 3344688988887643 3789999975
No 314
>PRK06153 hypothetical protein; Provisional
Probab=31.83 E-value=40 Score=31.59 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.+.+|+|.| +||+|..+++.+...|.
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPV 200 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCC
Confidence 457899999 99999988888777775
No 315
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=31.73 E-value=48 Score=30.42 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
..|++|.|+| .|.+|...++-++.+|+
T Consensus 160 ~~gK~vgilG-~G~IG~~ia~rL~~Fg~ 186 (336)
T KOG0069|consen 160 LEGKTVGILG-LGRIGKAIAKRLKPFGC 186 (336)
T ss_pred ccCCEEEEec-CcHHHHHHHHhhhhccc
Confidence 3688999999 99999999999999885
No 316
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.15 E-value=47 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=17.9
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
|||+| +|.-|++|+--|+..|++|
T Consensus 38 VlVVG-~G~AGl~AAi~Aae~G~~V 61 (640)
T PRK07573 38 VIVVG-TGLAGASAAATLGELGYNV 61 (640)
T ss_pred EEEEC-ccHHHHHHHHHHHHcCCcE
Confidence 77777 8888887766666677766
No 317
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=30.96 E-value=1e+02 Score=27.83 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH--HcCCCCCCEEEEEcC
Q 024775 164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE--RTGFSAGKSILVLNG 241 (262)
Q Consensus 164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~--~~~~~~g~~VlI~Ga 241 (262)
.+.|++.+... .|.+|..-....++++..++ |.+......|.+ ||+ ...+++|.+|+=.|
T Consensus 109 ~rig~~f~I~P------------sw~~~~~~~~~~~i~lDPGl----AFGTG~HpTT~l-cL~~Le~~~~~g~~vlDvG- 170 (300)
T COG2264 109 VRIGERFVIVP------------SWREYPEPSDELNIELDPGL----AFGTGTHPTTSL-CLEALEKLLKKGKTVLDVG- 170 (300)
T ss_pred EEeeeeEEECC------------CCccCCCCCCceEEEEcccc----ccCCCCChhHHH-HHHHHHHhhcCCCEEEEec-
Confidence 57788776644 35554322234566676665 333444544444 443 23466999999888
Q ss_pred chHHHHHHHHHHHHcCC
Q 024775 242 SGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 242 ~G~vG~~aiqlAk~~Ga 258 (262)
||. |.++|..+|. ||
T Consensus 171 cGS-GILaIAa~kL-GA 185 (300)
T COG2264 171 CGS-GILAIAAAKL-GA 185 (300)
T ss_pred CCh-hHHHHHHHHc-CC
Confidence 665 7777766554 44
No 318
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=30.89 E-value=53 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC--CccCC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL--EFFFS 262 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--a~V~~ 262 (262)
+..++++||++|+=.| +|. |.+...+++..| .+|||
T Consensus 33 ~~~l~i~pG~~VlEaG-tGS-G~lt~~l~r~v~p~G~v~t 70 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAG-TGS-GSLTHALARAVGPTGHVYT 70 (247)
T ss_dssp HHHTT--TT-EEEEE---TT-SHHHHHHHHHHTTTSEEEE
T ss_pred HHHcCCCCCCEEEEec-CCc-HHHHHHHHHHhCCCeEEEc
Confidence 4568999999998876 544 777888888776 35553
No 319
>PLN02565 cysteine synthase
Probab=30.58 E-value=1e+02 Score=27.84 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=28.2
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
..+.+|++.+|...+|..|++++..|+.+|.+++
T Consensus 61 g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ 94 (322)
T PLN02565 61 GLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLI 94 (322)
T ss_pred CCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEE
Confidence 4467887777777799999999999999998753
No 320
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.02 E-value=55 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+.+|+|.| +|++|..++..+...|..
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg 160 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVG 160 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 556789998 999999999988888863
No 321
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=29.75 E-value=54 Score=34.69 Aligned_cols=29 Identities=10% Similarity=-0.046 Sum_probs=24.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+..|+|+| +|+-|+.++..++..|.+|+
T Consensus 536 ~~kkVaIIG-GGPAGLSAA~~LAr~G~~VT 564 (1012)
T TIGR03315 536 SAHKVAVIG-AGPAGLSAGYFLARAGHPVT 564 (1012)
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 467899999 99999999988888888763
No 322
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=29.69 E-value=49 Score=31.91 Aligned_cols=28 Identities=14% Similarity=-0.030 Sum_probs=23.6
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
...|+|.| +|+-|+.++..+..+|.+|.
T Consensus 212 ~~dVvIIG-gGpAGl~AA~~la~~G~~v~ 239 (515)
T TIGR03140 212 PYDVLVVG-GGPAGAAAAIYAARKGLRTA 239 (515)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 35688888 99999999999999998773
No 323
>PLN03013 cysteine synthase
Probab=29.34 E-value=1.1e+02 Score=29.10 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=29.5
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+.+|.+.+|...+|..|++.+..|+.+|.+++
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~ 202 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLI 202 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEE
Confidence 445678897777777799999999999999998753
No 324
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=29.23 E-value=64 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
.+.+|+|.| +|++|..+++.+...|.
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gv 65 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGV 65 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 445799998 99999999998888886
No 325
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=28.86 E-value=61 Score=34.31 Aligned_cols=29 Identities=14% Similarity=-0.054 Sum_probs=24.5
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|..|+|+| +|+.|+.++..+...|.+|.
T Consensus 429 ~~~kVaIIG-~GPAGLsaA~~La~~G~~Vt 457 (1006)
T PRK12775 429 KLGKVAICG-SGPAGLAAAADLVKYGVDVT 457 (1006)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence 367899999 99999998888888887663
No 326
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.77 E-value=76 Score=26.49 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC--CccC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL--EFFF 261 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--a~V~ 261 (262)
++...+++|++||=.| +|. |..++.+++..+ ++|+
T Consensus 65 ~~~l~~~~~~~VLDiG-~Gs-G~~~~~la~~~~~~g~V~ 101 (205)
T PRK13944 65 CELIEPRPGMKILEVG-TGS-GYQAAVCAEAIERRGKVY 101 (205)
T ss_pred HHhcCCCCCCEEEEEC-cCc-cHHHHHHHHhcCCCCEEE
Confidence 3556788999999988 544 777778887764 4554
No 327
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=28.18 E-value=64 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=16.7
Q ss_pred CCCCCCEEEEecCccccCCCCCCCceeeEEEec
Q 024775 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195 (262)
Q Consensus 163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~ 195 (262)
.+++||+|..+.. .|+ +.|++++
T Consensus 76 ~Lk~GD~V~ll~~---------~~g-Q~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLRV---------QGG-QKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEEe---------cCC-CEEEEEE
Confidence 5999999999763 344 5677665
No 328
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=28.15 E-value=1.4e+02 Score=27.40 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=26.7
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
+..+--.+.+|||.| +|-+|..++..++..|++
T Consensus 167 ~~~~~l~~k~vLvIG-aGem~~l~a~~L~~~g~~ 199 (338)
T PRK00676 167 RRRQKSKKASLLFIG-YSEINRKVAYYLQRQGYS 199 (338)
T ss_pred HHhCCccCCEEEEEc-ccHHHHHHHHHHHHcCCC
Confidence 334445788999999 899999999999999863
No 329
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.12 E-value=85 Score=26.22 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=19.3
Q ss_pred CCCCCEEEEEc---CchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLN---GSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~G---a~G~vG~~aiqlAk~~Ga~V 260 (262)
+.+|++|+|.- ++|+.=.+++++++..|++|
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 45667766652 25566666677777776654
No 330
>PLN00011 cysteine synthase
Probab=27.88 E-value=1.2e+02 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++++..+.+|..-+|...+|..|++++..|+.+|.+++
T Consensus 59 a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ 96 (323)
T PLN00011 59 AEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVI 96 (323)
T ss_pred HHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 34556678884344556799999999999999998754
No 331
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=27.52 E-value=54 Score=32.71 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=19.2
Q ss_pred CEEEEEcCchHHHHHHHHHHHH-cCCcc
Q 024775 234 KSILVLNGSGGVGSLVIQVCYY-YLEFF 260 (262)
Q Consensus 234 ~~VlI~Ga~G~vG~~aiqlAk~-~Ga~V 260 (262)
-.|+|.| +|+.|++++..+.. .|.+|
T Consensus 33 ~dVlIVG-AGPaGL~lA~~Lar~~Gi~v 59 (634)
T PRK08294 33 VDVLIVG-CGPAGLTLAAQLSAFPDITT 59 (634)
T ss_pred CCEEEEC-CCHHHHHHHHHHhcCCCCcE
Confidence 3589998 99999986666555 47654
No 332
>PRK11761 cysM cysteine synthase B; Provisional
Probab=27.45 E-value=1.5e+02 Score=26.45 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+.+|++|+.. .+|..|++++..|+.+|.+++
T Consensus 56 ~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~ 90 (296)
T PRK11761 56 KRGEIKPGDTLIEA-TSGNTGIALAMIAAIKGYRMK 90 (296)
T ss_pred HcCCCCCCCEEEEe-CCChHHHHHHHHHHHcCCCEE
Confidence 34456788876664 599999999999999998753
No 333
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=27.09 E-value=1.5e+02 Score=26.29 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+.+|++|+. ..+|..|++++..|+.+|.+++
T Consensus 52 ~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~ 86 (290)
T TIGR01138 52 KRGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMK 86 (290)
T ss_pred HcCCCCCCCEEEE-ECCChHHHHHHHHHHHcCCeEE
Confidence 4455677887655 5599999999999999998653
No 334
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=27.07 E-value=74 Score=31.38 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=19.8
Q ss_pred CCCCEEEEEcCchHHHHH-HHHHHHH
Q 024775 231 SAGKSILVLNGSGGVGSL-VIQVCYY 255 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~-aiqlAk~ 255 (262)
-.|++|||.||.|.+|.. +-|+++.
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~ 273 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKF 273 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhc
Confidence 468999999999999975 4455554
No 335
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.98 E-value=84 Score=28.61 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
++...++++++||..| +| .|..++.+++..+.
T Consensus 73 l~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~~ 104 (322)
T PRK13943 73 MEWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVGE 104 (322)
T ss_pred HHhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcCC
Confidence 3556788999999998 66 59999999988763
No 336
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=26.83 E-value=66 Score=26.44 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHcCCCCCCEEEEEc---CchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLN---GSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~G---a~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+...+++|++|+|.. |+|+.-.+|..|....|++|.
T Consensus 115 q~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vv 153 (183)
T KOG1712|consen 115 QKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVV 153 (183)
T ss_pred eccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEE
Confidence 345688999998873 588888999999999999874
No 337
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=26.83 E-value=85 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC-Ccc
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL-EFF 260 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V 260 (262)
....+.++++|+-+| +|. |..+..+++..+ .+|
T Consensus 13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v 46 (124)
T TIGR02469 13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRV 46 (124)
T ss_pred HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceE
Confidence 445677888999998 766 888999988764 344
No 338
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=26.55 E-value=67 Score=33.75 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.|++|+|+| .|.+|.-++..|+..|++|+
T Consensus 446 ~Gk~VvVIG-GG~tA~D~A~ta~R~Ga~Vt 474 (944)
T PRK12779 446 KGKEVFVIG-GGNTAMDAARTAKRLGGNVT 474 (944)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 689999999 89999999999999999763
No 339
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=26.22 E-value=73 Score=32.00 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
...+|||.| +|++|..+++.+...|.+
T Consensus 337 ~~~kVLIvG-aGGLGs~VA~~La~~GVg 363 (664)
T TIGR01381 337 SQLKVLLLG-AGTLGCNVARCLIGWGVR 363 (664)
T ss_pred hcCeEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 467899999 999999999999988874
No 340
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=26.22 E-value=84 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHcCCCCCCEEEEEcCch--HHHHHHHHHHHHcCCcc
Q 024775 225 LERTGFSAGKSILVLNGSG--GVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G--~vG~~aiqlAk~~Ga~V 260 (262)
+.+.+++++|.++|+.-+| +++.-++.++|..||+|
T Consensus 97 l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~v 134 (243)
T COG4821 97 LHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKV 134 (243)
T ss_pred HHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeE
Confidence 3567899999988886454 67888999999999986
No 341
>PRK10717 cysteine synthase A; Provisional
Probab=26.17 E-value=1.6e+02 Score=26.58 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=27.1
Q ss_pred HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
++...+++|++|+- ..+|..|++++..|+.+|.++
T Consensus 56 ~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~ 90 (330)
T PRK10717 56 EKRGLLKPGGTIVE-GTAGNTGIGLALVAAARGYKT 90 (330)
T ss_pred HHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcE
Confidence 34445677877655 559999999999999999865
No 342
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.97 E-value=1e+02 Score=25.79 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCCCCEEEEEc---CchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLN---GSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~G---a~G~vG~~aiqlAk~~Ga~V 260 (262)
+.+|++|||.- ++|+.=.+++++++..|++|
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 56888887763 37777788888888888865
No 343
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=25.75 E-value=66 Score=23.58 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEe
Q 024775 152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAV 194 (262)
Q Consensus 152 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v 194 (262)
|+|.-.+ +...+++||+|....++.|.- ...|.+|.++
T Consensus 56 g~l~~~~-~~~~~~vGd~v~iiP~H~C~t----~nl~~~~~vv 93 (94)
T PF14031_consen 56 GILRLPD-GADRLKVGDKVEIIPNHCCPT----VNLHDEYYVV 93 (94)
T ss_dssp EEEE-ST-TGCGT-TT-EEEEEESSHHHH----HTT-SEEEEE
T ss_pred eEEECCC-CCCCCCCCCEEEEECCccchh----hhhcCEEEEE
Confidence 5554433 234599999999988765532 2345555544
No 344
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=25.67 E-value=75 Score=32.32 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCc-c
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEF-F 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V 260 (262)
...|++|+|+| .|.+|+-++..++.+|++ |
T Consensus 567 ~~~gk~VvVIG-gG~~a~d~A~~~~r~Ga~~V 597 (752)
T PRK12778 567 IKFGKKVAVVG-GGNTAMDSARTAKRLGAERV 597 (752)
T ss_pred ccCCCcEEEEC-CcHHHHHHHHHHHHcCCCeE
Confidence 45789999999 899999999999999987 5
No 345
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.58 E-value=69 Score=29.65 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
...+|.|.||.|.+|...+..++..|..|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V 125 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQV 125 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeE
Confidence 34689999989999999999888888655
No 346
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=25.38 E-value=69 Score=32.03 Aligned_cols=25 Identities=16% Similarity=-0.088 Sum_probs=19.3
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|||+| +|.-|+.|+.-|...|++|.
T Consensus 53 VlVIG-~G~AGl~AAl~Aae~G~~Vi 77 (635)
T PLN00128 53 AVVVG-AGGAGLRAAIGLSEHGFNTA 77 (635)
T ss_pred EEEEC-ccHHHHHHHHHHHhcCCcEE
Confidence 88888 89899877666666787763
No 347
>PLN02503 fatty acyl-CoA reductase 2
Probab=25.29 E-value=82 Score=31.35 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=22.7
Q ss_pred cCCCCCCEEEEEcCchHHHHHHHHHHHHc
Q 024775 228 TGFSAGKSILVLNGSGGVGSLVIQVCYYY 256 (262)
Q Consensus 228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~ 256 (262)
...-.|.+|||.||+|-+|...++-+...
T Consensus 114 ~~f~~~k~VlVTGaTGFLGk~LlekLLr~ 142 (605)
T PLN02503 114 AEFLRGKNFLITGATGFLAKVLIEKILRT 142 (605)
T ss_pred hhhhcCCEEEEcCCchHHHHHHHHHHHHh
Confidence 34557999999999999999877655443
No 348
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=24.84 E-value=83 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLE 258 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga 258 (262)
...|++|+|.| .|.+|+-++..+...|+
T Consensus 278 ~~~gk~VvVIG-gG~~g~e~A~~~~~~ga 305 (471)
T PRK12810 278 SAKGKHVVVIG-GGDTGMDCVGTAIRQGA 305 (471)
T ss_pred cCCCCEEEEEC-CcHHHHHHHHHHHHcCC
Confidence 34689999998 89999998888888887
No 349
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.74 E-value=86 Score=21.61 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=15.0
Q ss_pred HHHHHHcCCCCCCEEEEEc
Q 024775 222 YEGLERTGFSAGKSILVLN 240 (262)
Q Consensus 222 ~~al~~~~~~~g~~VlI~G 240 (262)
..+|+++++++||+|.|.+
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred HHHHHHcCCCCCCEEEEcc
Confidence 4556778999999998853
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=24.58 E-value=66 Score=26.09 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=17.4
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
-+|++|+|.| +|..+.-++..+...|.+|
T Consensus 165 ~~~k~V~VVG-~G~SA~d~a~~l~~~g~~V 193 (203)
T PF13738_consen 165 FKGKRVVVVG-GGNSAVDIAYALAKAGKSV 193 (203)
T ss_dssp CTTSEEEEE---SHHHHHHHHHHTTTCSEE
T ss_pred cCCCcEEEEc-ChHHHHHHHHHHHhhCCEE
Confidence 4679999999 6766655555444445544
No 351
>PLN00203 glutamyl-tRNA reductase
Probab=24.43 E-value=93 Score=30.38 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.+.+|+|+| +|.+|.++++.+...|++
T Consensus 265 ~~kkVlVIG-AG~mG~~~a~~L~~~G~~ 291 (519)
T PLN00203 265 ASARVLVIG-AGKMGKLLVKHLVSKGCT 291 (519)
T ss_pred CCCEEEEEe-CHHHHHHHHHHHHhCCCC
Confidence 478899999 799999999999888863
No 352
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=24.21 E-value=93 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V 260 (262)
+..|++|+|.| .|.+|.-++..+...|+ +|
T Consensus 270 ~~~g~~VvViG-gG~~g~e~A~~l~~~G~~~V 300 (457)
T PRK11749 270 LPVGKRVVVIG-GGNTAMDAARTAKRLGAESV 300 (457)
T ss_pred CCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence 45789999999 88999988888888887 44
No 353
>PRK13748 putative mercuric reductase; Provisional
Probab=24.16 E-value=74 Score=30.84 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=20.8
Q ss_pred EEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.|+|+| +|+-|+.++..|..+|.+|
T Consensus 100 DvvVIG-~GpaG~~aA~~~~~~G~~v 124 (561)
T PRK13748 100 HVAVIG-SGGAAMAAALKAVEQGARV 124 (561)
T ss_pred CEEEEC-cCHHHHHHHHHHHhCCCeE
Confidence 377778 7889999888888888876
No 354
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.09 E-value=92 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=22.2
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
.|++|+|.| +|.+|+-++..+...|++
T Consensus 171 ~g~~vvViG-~G~~g~e~A~~l~~~g~~ 197 (352)
T PRK12770 171 EGKKVVVVG-AGLTAVDAALEAVLLGAE 197 (352)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 378999999 889998888777777876
No 355
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=23.80 E-value=87 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.9
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
...+|+|.| +|++|..++..+...|..
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg 67 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVG 67 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 345799999 999999988888887763
No 356
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=23.58 E-value=1.7e+02 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+...|++|.|...+|+.|.++...+...|.++
T Consensus 291 ~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~l 322 (447)
T TIGR02717 291 PLPKGNRVAIITNAGGPGVIATDACEENGLEL 322 (447)
T ss_pred CCCCCCeEEEEECCchHHHHHHHHHHHcCCCc
Confidence 34578999999889999999999999998764
No 357
>PLN02697 lycopene epsilon cyclase
Probab=23.43 E-value=80 Score=30.84 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=19.5
Q ss_pred EEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 235 SILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 235 ~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.|+|.| +|..|++++..+...|.+|
T Consensus 110 DVvIVG-aGPAGLalA~~Lak~Gl~V 134 (529)
T PLN02697 110 DLVVIG-CGPAGLALAAESAKLGLNV 134 (529)
T ss_pred cEEEEC-cCHHHHHHHHHHHhCCCcE
Confidence 478888 9999988776666668776
No 358
>PRK07411 hypothetical protein; Validated
Probab=23.02 E-value=92 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
..+|+|.| +|++|..+++.+...|..
T Consensus 38 ~~~VlivG-~GGlG~~va~~La~~Gvg 63 (390)
T PRK07411 38 AASVLCIG-TGGLGSPLLLYLAAAGIG 63 (390)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 35789998 999999999888888863
No 359
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.80 E-value=2.2e+02 Score=26.47 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+++|+|.| +|.+|.-++..++..|.+|.
T Consensus 148 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vt 176 (444)
T PRK09564 148 EIKNIVIIG-AGFIGLEAVEAAKHLGKNVR 176 (444)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCcEE
Confidence 468899998 89999988888888887763
No 360
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.58 E-value=2.4e+02 Score=18.59 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 214 l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+|.++..+..++ ..+.+|+.+.|.......-.-...+++..|.++
T Consensus 9 CP~Pl~~~~~~l--~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~ 53 (69)
T cd00291 9 CPLPVLKTKKAL--EKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEV 53 (69)
T ss_pred CCHHHHHHHHHH--hcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEE
Confidence 355555555444 357899998877766666777888898888875
No 361
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=22.56 E-value=95 Score=21.91 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=15.3
Q ss_pred HHHHHHcCCCCCCEEEEEcC
Q 024775 222 YEGLERTGFSAGKSILVLNG 241 (262)
Q Consensus 222 ~~al~~~~~~~g~~VlI~Ga 241 (262)
.+++++..+++||.|++.+.
T Consensus 58 ~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 58 ADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHcCCCCCCCEEEEEEE
Confidence 34446678999999999873
No 362
>PTZ00058 glutathione reductase; Provisional
Probab=21.99 E-value=88 Score=30.78 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.0
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
|+|+| +|+-|+.++..|..+|.+|
T Consensus 51 vvVIG-~G~aG~~aA~~aa~~G~~V 74 (561)
T PTZ00058 51 LIVIG-GGSGGMAAARRAARNKAKV 74 (561)
T ss_pred EEEEC-cCHHHHHHHHHHHHcCCeE
Confidence 77888 7999999999899999887
No 363
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=21.77 E-value=2.1e+02 Score=25.32 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+...+.+|++| |...+|..|++++..|+.+|.+++
T Consensus 50 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~ 84 (298)
T TIGR01139 50 KRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLI 84 (298)
T ss_pred HcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEE
Confidence 44456778876 556699999999999999998753
No 364
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=21.72 E-value=1.9e+02 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=27.7
Q ss_pred HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
++..+.+|++|+-. .+|..|.+++..|+.+|.+++
T Consensus 55 ~~g~~~~g~~vv~~-ssGN~g~alA~~a~~~G~~~~ 89 (454)
T TIGR01137 55 ASGRLKPGDTIIEP-TSGNTGIGLALVAAIKGYKCI 89 (454)
T ss_pred HcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCeEE
Confidence 44456788876665 599999999999999998753
No 365
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=21.67 E-value=70 Score=29.85 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+-+|++++|.| -|-+|.-.++.++..||+|
T Consensus 206 liaGK~vVV~G-YG~vGrG~A~~~rg~GA~V 235 (420)
T COG0499 206 LLAGKNVVVAG-YGWVGRGIAMRLRGMGARV 235 (420)
T ss_pred eecCceEEEec-ccccchHHHHHhhcCCCeE
Confidence 56999999998 9999999999999999987
No 366
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.50 E-value=1e+02 Score=28.83 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=23.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
.+++|+|.| +|.+|.-+++..+.+|.+|+
T Consensus 156 ~~~~vvIIG-gG~~g~e~A~~l~~~g~~Vt 184 (438)
T PRK07251 156 LPERLGIIG-GGNIGLEFAGLYNKLGSKVT 184 (438)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 457899999 89999988888888888763
No 367
>PLN02985 squalene monooxygenase
Probab=20.77 E-value=1.3e+02 Score=29.27 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=20.9
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
.-.|+|.| +|..|++++..+...|.+|
T Consensus 43 ~~DViIVG-AG~aGlalA~aLa~~G~~V 69 (514)
T PLN02985 43 ATDVIIVG-AGVGGSALAYALAKDGRRV 69 (514)
T ss_pred CceEEEEC-CCHHHHHHHHHHHHcCCeE
Confidence 34588888 9999998776666678766
No 368
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=20.74 E-value=1.1e+02 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
+++|+|.| +|.+|+-++..++.+|.+|+
T Consensus 180 ~~~vvIIG-gG~~G~E~A~~l~~~g~~Vt 207 (472)
T PRK05976 180 PKSLVIVG-GGVIGLEWASMLADFGVEVT 207 (472)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 47899998 89999998888888888763
No 369
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=20.70 E-value=59 Score=30.15 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYYLEF 259 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~ 259 (262)
....|||.| +||+|-=++|.+.+.|+.
T Consensus 65 k~s~VLVVG-aGGLGcPa~~YLaaaGvG 91 (427)
T KOG2017|consen 65 KNSSVLVVG-AGGLGCPAAQYLAAAGVG 91 (427)
T ss_pred CCccEEEEc-cCCCCCHHHHHHHHcCCC
Confidence 456799999 999999999999998874
No 370
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=20.69 E-value=1.1e+02 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 233 GKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
-..++|.| .|.+|+.+...++..|.+|
T Consensus 136 ~~~v~vvG-~G~~gle~A~~~~~~G~~v 162 (415)
T COG0446 136 PKDVVVVG-AGPIGLEAAEAAAKRGKKV 162 (415)
T ss_pred cCeEEEEC-CcHHHHHHHHHHHHcCCeE
Confidence 56777877 9999999999999999876
No 371
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=20.64 E-value=1e+02 Score=28.77 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCCEEEEEcCchHHHHHHHHHHHHc
Q 024775 232 AGKSILVLNGSGGVGSLVIQVCYYY 256 (262)
Q Consensus 232 ~g~~VlI~Ga~G~vG~~aiqlAk~~ 256 (262)
...+|.|.||+|-+|+..++++..+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h 61 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH 61 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC
Confidence 3358999999999999999998877
No 372
>PLN02546 glutathione reductase
Probab=20.38 E-value=99 Score=30.39 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=21.1
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|+|+| +|+-|+.++..|..+|++|.
T Consensus 82 vvVIG-~GpaG~~aA~~aa~~G~~V~ 106 (558)
T PLN02546 82 LFTIG-AGSGGVRASRFASNFGASAA 106 (558)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 77888 78889998888888999873
No 373
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=20.29 E-value=1.1e+02 Score=26.76 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
+++.+..+.-+..+.| |.+.+|..|.+++..|+.+|.++
T Consensus 44 a~~~l~~a~~~~~~~v-v~assGN~g~a~A~~a~~~g~~~ 82 (306)
T PF00291_consen 44 AYYLLSRAKEKGGRTV-VGASSGNHGRALAYAAARLGLKC 82 (306)
T ss_dssp HHHHHHHHHHTTTSEE-EEESSSHHHHHHHHHHHHHTCEE
T ss_pred chhhhhhcccccccee-eeeccCCceehhhhhhhhccccc
Confidence 3444443322244556 66779999999999999999865
No 374
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=20.25 E-value=89 Score=33.67 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=21.6
Q ss_pred EEEEcCchHHHHHHHHHHHHcCCccC
Q 024775 236 ILVLNGSGGVGSLVIQVCYYYLEFFF 261 (262)
Q Consensus 236 VlI~Ga~G~vG~~aiqlAk~~Ga~V~ 261 (262)
|||.| +|.-|++|+--|...|++|.
T Consensus 412 VvVVG-~G~AGl~AAi~Aae~Ga~Vi 436 (1167)
T PTZ00306 412 VIVVG-GGLAGCSAAIEAASCGAQVI 436 (1167)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 88888 99999998888888899874
No 375
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.09 E-value=2.6e+02 Score=25.88 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775 231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFF 260 (262)
Q Consensus 231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V 260 (262)
..+++|+|.| +|.+|.-++..++..|.+|
T Consensus 135 ~~~~~vvViG-gG~~g~e~A~~l~~~g~~V 163 (427)
T TIGR03385 135 NKVENVVIIG-GGYIGIEMAEALRERGKNV 163 (427)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHhCCCcE
Confidence 3467888888 8899988888888888765
No 376
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=20.01 E-value=92 Score=21.43 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=11.4
Q ss_pred HHHHHHcCCCCCCEEEEE
Q 024775 222 YEGLERTGFSAGKSILVL 239 (262)
Q Consensus 222 ~~al~~~~~~~g~~VlI~ 239 (262)
..+|+++++++||+|.|-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIG 63 (69)
T ss_dssp HHHHHTTT--TT-EEEET
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 455677899999999883
Done!