Query 024778
Match_columns 262
No_of_seqs 312 out of 1674
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 4.6E-42 1E-46 302.8 28.3 236 1-253 1-247 (356)
2 KOG0553 TPR repeat-containing 99.9 1.4E-21 3E-26 162.4 13.2 120 2-121 81-200 (304)
3 cd06488 p23_melusin_like p23_l 99.9 9.7E-22 2.1E-26 138.7 9.0 76 174-249 1-87 (87)
4 KOG1309 Suppressor of G2 allel 99.9 1E-21 2.2E-26 150.3 6.9 79 172-250 2-91 (196)
5 cd06489 p23_CS_hSgt1_like p23_ 99.8 3.1E-19 6.8E-24 125.2 8.4 73 177-249 1-84 (84)
6 cd06490 p23_NCB5OR p23_like do 99.8 3.7E-19 7.9E-24 125.3 8.1 73 176-249 1-87 (87)
7 KOG0548 Molecular co-chaperone 99.7 5.6E-17 1.2E-21 143.7 14.4 116 2-117 358-473 (539)
8 PRK15359 type III secretion sy 99.7 6.2E-16 1.3E-20 119.6 15.8 115 4-118 26-140 (144)
9 cd06466 p23_CS_SGT1_like p23_l 99.7 7.8E-17 1.7E-21 113.0 8.7 73 177-249 1-84 (84)
10 COG5091 SGT1 Suppressor of G2 99.7 1.2E-16 2.5E-21 130.5 10.4 237 9-252 2-267 (368)
11 KOG0543 FKBP-type peptidyl-pro 99.7 2.8E-15 6.1E-20 129.7 14.7 122 2-123 208-344 (397)
12 cd06468 p23_CacyBP p23_like do 99.7 5.7E-16 1.2E-20 110.6 8.6 75 175-249 3-92 (92)
13 KOG0548 Molecular co-chaperone 99.6 2.5E-15 5.4E-20 133.4 11.5 114 1-114 1-114 (539)
14 KOG4234 TPR repeat-containing 99.6 1.1E-14 2.3E-19 115.0 12.6 122 2-123 95-221 (271)
15 TIGR02552 LcrH_SycD type III s 99.6 4E-14 8.8E-19 107.8 15.2 115 3-117 18-132 (135)
16 PRK15363 pathogenicity island 99.6 4.3E-14 9.3E-19 108.7 14.9 116 3-118 36-151 (157)
17 KOG4648 Uncharacterized conser 99.6 4.8E-15 1E-19 125.5 9.8 113 3-115 98-210 (536)
18 cd06465 p23_hB-ind1_like p23_l 99.6 4.5E-15 9.8E-20 109.1 8.4 76 175-252 2-90 (108)
19 KOG0376 Serine-threonine phosp 99.6 1.1E-14 2.4E-19 128.3 9.2 134 1-134 3-136 (476)
20 PRK11189 lipoprotein NlpI; Pro 99.5 2.2E-13 4.8E-18 117.7 15.8 108 2-109 64-171 (296)
21 cd06469 p23_DYX1C1_like p23_li 99.5 2.3E-14 4.9E-19 99.0 7.7 67 178-249 1-78 (78)
22 KOG0547 Translocase of outer m 99.5 1.2E-13 2.7E-18 121.5 12.4 118 2-119 115-233 (606)
23 KOG1667 Zn2+-binding protein M 99.5 2.3E-14 5E-19 115.5 6.8 83 171-253 212-306 (320)
24 cd06463 p23_like Proteins cont 99.5 8.3E-14 1.8E-18 97.2 8.7 72 178-249 1-84 (84)
25 PRK10370 formate-dependent nit 99.5 6.8E-13 1.5E-17 108.0 14.8 109 2-110 73-184 (198)
26 cd00237 p23 p23 binds heat sho 99.5 1.5E-13 3.3E-18 99.9 8.7 77 174-252 2-90 (106)
27 KOG0550 Molecular chaperone (D 99.5 2.8E-13 6E-18 117.2 11.3 116 3-119 250-369 (486)
28 PF04969 CS: CS domain; Inter 99.5 1.9E-13 4.1E-18 94.4 6.9 58 175-232 2-61 (79)
29 cd06493 p23_NUDCD1_like p23_NU 99.5 3.4E-13 7.4E-18 94.6 8.0 70 176-248 1-84 (85)
30 KOG4626 O-linked N-acetylgluco 99.4 2.8E-13 6.1E-18 122.3 9.0 119 3-121 253-371 (966)
31 TIGR00990 3a0801s09 mitochondr 99.4 2.3E-12 4.9E-17 122.2 15.3 117 4-120 367-483 (615)
32 TIGR00990 3a0801s09 mitochondr 99.4 2.1E-12 4.5E-17 122.4 14.9 120 3-122 332-451 (615)
33 TIGR02795 tol_pal_ybgF tol-pal 99.4 4.9E-12 1.1E-16 93.6 13.8 107 2-108 2-114 (119)
34 KOG4626 O-linked N-acetylgluco 99.4 1E-12 2.2E-17 118.8 11.7 112 2-113 388-499 (966)
35 cd00189 TPR Tetratricopeptide 99.4 1.2E-11 2.6E-16 86.0 13.0 99 4-102 2-100 (100)
36 cd06467 p23_NUDC_like p23_like 99.4 1.3E-12 2.8E-17 91.7 7.5 70 176-248 1-84 (85)
37 KOG1126 DNA-binding cell divis 99.4 9.5E-13 2.1E-17 119.7 7.8 121 3-123 422-542 (638)
38 KOG1155 Anaphase-promoting com 99.4 6.9E-12 1.5E-16 110.0 11.8 116 8-123 336-451 (559)
39 KOG4642 Chaperone-dependent E3 99.4 3.1E-12 6.7E-17 103.6 8.6 99 1-99 9-107 (284)
40 PF13414 TPR_11: TPR repeat; P 99.4 4.2E-12 9E-17 85.3 7.8 66 36-101 3-69 (69)
41 PRK15331 chaperone protein Sic 99.3 3.8E-11 8.2E-16 93.0 13.9 115 3-118 38-152 (165)
42 COG3063 PilF Tfp pilus assembl 99.3 1.7E-11 3.6E-16 99.1 12.3 121 2-122 35-157 (250)
43 PRK15359 type III secretion sy 99.3 8.2E-12 1.8E-16 96.5 10.3 100 21-123 12-111 (144)
44 PRK12370 invasion protein regu 99.3 2E-11 4.4E-16 114.2 14.7 116 4-119 340-456 (553)
45 PF13414 TPR_11: TPR repeat; P 99.3 6.5E-12 1.4E-16 84.3 8.1 66 2-67 3-69 (69)
46 KOG3260 Calcyclin-binding prot 99.3 8.1E-12 1.8E-16 96.0 9.1 73 176-248 77-161 (224)
47 KOG1155 Anaphase-promoting com 99.3 3.6E-11 7.8E-16 105.6 14.3 121 3-123 365-485 (559)
48 PRK02603 photosystem I assembl 99.3 5.5E-11 1.2E-15 94.6 14.1 110 2-111 35-162 (172)
49 PRK10370 formate-dependent nit 99.3 2.9E-11 6.3E-16 98.4 12.5 110 15-124 52-164 (198)
50 KOG1126 DNA-binding cell divis 99.3 1.1E-11 2.5E-16 112.7 11.0 122 3-124 490-611 (638)
51 PRK12370 invasion protein regu 99.3 3.7E-11 8E-16 112.5 14.7 96 16-111 318-413 (553)
52 KOG0547 Translocase of outer m 99.3 1.9E-11 4.1E-16 107.9 11.5 118 1-118 325-442 (606)
53 TIGR02521 type_IV_pilW type IV 99.3 8.5E-11 1.8E-15 96.1 14.8 118 2-119 31-150 (234)
54 PRK09782 bacteriophage N4 rece 99.3 6E-11 1.3E-15 116.6 15.9 111 3-113 610-720 (987)
55 PRK15179 Vi polysaccharide bio 99.3 4.9E-11 1.1E-15 113.2 14.5 119 2-120 86-204 (694)
56 PF12895 Apc3: Anaphase-promot 99.3 1.1E-11 2.4E-16 86.7 6.9 82 14-96 1-84 (84)
57 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-10 4.1E-15 99.5 15.7 114 2-115 98-282 (296)
58 KOG0551 Hsp90 co-chaperone CNS 99.3 4.9E-11 1.1E-15 100.9 11.2 102 2-103 81-186 (390)
59 TIGR03302 OM_YfiO outer membra 99.3 2.4E-10 5.2E-15 95.2 14.9 106 2-107 33-152 (235)
60 TIGR02521 type_IV_pilW type IV 99.3 2.6E-10 5.6E-15 93.2 14.8 120 3-122 66-187 (234)
61 TIGR02552 LcrH_SycD type III s 99.3 9.3E-11 2E-15 89.1 11.2 101 23-123 4-104 (135)
62 COG5010 TadD Flp pilus assembl 99.2 2E-10 4.3E-15 94.5 13.5 120 5-124 103-222 (257)
63 KOG1125 TPR repeat-containing 99.2 2.1E-11 4.6E-16 109.5 8.4 99 4-102 432-530 (579)
64 PRK09782 bacteriophage N4 rece 99.2 1.5E-10 3.3E-15 113.8 15.0 114 9-123 583-696 (987)
65 CHL00033 ycf3 photosystem I as 99.2 4.2E-10 9.1E-15 89.1 14.9 110 2-111 35-162 (168)
66 KOG0624 dsRNA-activated protei 99.2 8.7E-11 1.9E-15 99.9 11.3 112 3-114 39-153 (504)
67 KOG0545 Aryl-hydrocarbon recep 99.2 1.7E-10 3.8E-15 93.9 12.5 118 4-121 180-316 (329)
68 PRK10803 tol-pal system protei 99.2 4.3E-10 9.3E-15 95.2 15.3 109 3-111 143-258 (263)
69 PF13429 TPR_15: Tetratricopep 99.2 7.1E-11 1.5E-15 101.2 10.5 122 3-124 147-268 (280)
70 PRK15174 Vi polysaccharide exp 99.2 3.5E-10 7.6E-15 107.9 14.5 104 4-107 248-355 (656)
71 PRK15174 Vi polysaccharide exp 99.2 3.4E-10 7.4E-15 108.0 14.3 115 7-121 217-335 (656)
72 cd06494 p23_NUDCD2_like p23-li 99.2 7.5E-11 1.6E-15 83.6 7.3 71 174-248 6-92 (93)
73 COG3063 PilF Tfp pilus assembl 99.2 3.5E-10 7.7E-15 91.5 11.8 117 4-120 71-189 (250)
74 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.3E-15 77.4 7.3 63 41-103 2-64 (65)
75 PF13512 TPR_18: Tetratricopep 99.2 1.8E-09 3.9E-14 81.9 14.0 106 2-107 10-136 (142)
76 COG4235 Cytochrome c biogenesi 99.2 2.1E-09 4.4E-14 90.5 15.6 118 2-119 156-276 (287)
77 KOG2076 RNA polymerase III tra 99.2 1E-09 2.2E-14 103.1 15.1 120 3-122 140-259 (895)
78 PF13432 TPR_16: Tetratricopep 99.2 1.8E-10 3.8E-15 76.4 7.4 65 6-70 1-65 (65)
79 KOG4555 TPR repeat-containing 99.1 3.8E-09 8.3E-14 78.3 14.0 101 3-103 44-148 (175)
80 PRK10049 pgaA outer membrane p 99.1 1.2E-09 2.7E-14 106.0 14.7 113 3-116 50-162 (765)
81 PLN02789 farnesyltranstransfer 99.1 2.5E-09 5.5E-14 93.1 14.8 115 3-117 72-189 (320)
82 TIGR03302 OM_YfiO outer membra 99.1 1.6E-09 3.5E-14 90.2 13.0 121 3-123 71-222 (235)
83 PF13525 YfiO: Outer membrane 99.1 7E-09 1.5E-13 84.8 16.2 119 2-120 5-143 (203)
84 COG4783 Putative Zn-dependent 99.1 2.3E-09 5.1E-14 95.0 14.1 120 4-123 308-427 (484)
85 COG1729 Uncharacterized protei 99.1 3.1E-09 6.8E-14 88.4 14.0 110 3-112 142-257 (262)
86 TIGR02917 PEP_TPR_lipo putativ 99.1 2.5E-09 5.4E-14 104.0 14.9 117 3-119 126-242 (899)
87 PRK10866 outer membrane biogen 99.1 8.6E-09 1.9E-13 86.5 15.8 119 2-120 32-177 (243)
88 KOG4162 Predicted calmodulin-b 99.1 1.6E-09 3.6E-14 100.3 11.8 103 2-104 684-788 (799)
89 PRK15363 pathogenicity island 99.1 1.8E-09 3.9E-14 83.3 10.2 96 28-123 26-122 (157)
90 PRK11447 cellulose synthase su 99.0 3.4E-09 7.3E-14 107.3 14.8 112 7-118 356-509 (1157)
91 PRK15179 Vi polysaccharide bio 99.0 6.7E-09 1.4E-13 98.8 15.7 114 3-116 121-235 (694)
92 TIGR02917 PEP_TPR_lipo putativ 99.0 3.8E-09 8.2E-14 102.7 14.6 116 5-121 773-888 (899)
93 PRK11447 cellulose synthase su 99.0 3.2E-09 7E-14 107.4 13.9 62 8-69 275-336 (1157)
94 PRK11788 tetratricopeptide rep 99.0 6.9E-09 1.5E-13 92.6 14.4 112 5-117 183-295 (389)
95 KOG2003 TPR repeat-containing 99.0 1.2E-09 2.7E-14 96.0 8.1 122 2-123 490-611 (840)
96 PF13371 TPR_9: Tetratricopept 99.0 2.8E-09 6.1E-14 72.1 8.2 65 44-108 3-67 (73)
97 PF14559 TPR_19: Tetratricopep 99.0 1.8E-09 4E-14 72.0 7.2 67 12-78 1-67 (68)
98 PRK11788 tetratricopeptide rep 99.0 1.3E-08 2.8E-13 90.8 14.8 119 4-122 37-159 (389)
99 PLN02789 farnesyltranstransfer 99.0 1.2E-08 2.5E-13 89.0 13.8 111 12-122 47-160 (320)
100 PRK10049 pgaA outer membrane p 99.0 1.5E-08 3.2E-13 98.5 15.7 108 4-111 361-468 (765)
101 KOG1173 Anaphase-promoting com 99.0 7.5E-09 1.6E-13 93.1 11.8 114 5-118 417-537 (611)
102 PF13371 TPR_9: Tetratricopept 99.0 6.6E-09 1.4E-13 70.3 8.9 70 9-78 2-71 (73)
103 KOG1308 Hsp70-interacting prot 98.9 3.9E-10 8.5E-15 95.9 2.8 111 2-113 114-224 (377)
104 KOG1125 TPR repeat-containing 98.9 4.9E-09 1.1E-13 94.5 9.8 87 36-122 430-516 (579)
105 PF12688 TPR_5: Tetratrico pep 98.9 3.9E-08 8.4E-13 73.2 12.9 97 2-98 1-103 (120)
106 PF06552 TOM20_plant: Plant sp 98.9 2.6E-08 5.6E-13 78.0 12.3 99 17-115 6-125 (186)
107 KOG3060 Uncharacterized conser 98.9 6E-08 1.3E-12 79.7 14.7 113 6-118 90-202 (289)
108 COG5010 TadD Flp pilus assembl 98.9 1.9E-08 4.1E-13 82.9 11.1 116 6-121 70-185 (257)
109 KOG1156 N-terminal acetyltrans 98.9 2.4E-08 5.1E-13 91.2 12.6 119 4-122 9-127 (700)
110 PF09976 TPR_21: Tetratricopep 98.9 2.7E-08 5.9E-13 76.8 11.4 119 3-122 12-136 (145)
111 PF14559 TPR_19: Tetratricopep 98.9 7.3E-09 1.6E-13 69.0 7.1 67 46-112 1-67 (68)
112 PLN03088 SGT1, suppressor of 98.9 3.2E-08 6.9E-13 87.8 11.8 83 2-84 36-118 (356)
113 PF13429 TPR_15: Tetratricopep 98.9 1.7E-08 3.7E-13 86.4 9.9 118 6-123 114-233 (280)
114 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.4E-08 3.1E-13 90.3 9.3 63 3-65 76-141 (453)
115 KOG0624 dsRNA-activated protei 98.8 1.3E-07 2.9E-12 80.8 14.2 117 4-120 157-276 (504)
116 COG4785 NlpI Lipoprotein NlpI, 98.8 2.1E-08 4.6E-13 80.6 8.8 116 2-117 65-180 (297)
117 COG4783 Putative Zn-dependent 98.8 1E-07 2.2E-12 84.8 13.4 112 6-117 344-455 (484)
118 PRK14574 hmsH outer membrane p 98.8 8.3E-08 1.8E-12 93.1 13.6 117 3-119 35-151 (822)
119 CHL00033 ycf3 photosystem I as 98.8 5.4E-08 1.2E-12 77.0 10.3 111 8-118 5-120 (168)
120 KOG0543 FKBP-type peptidyl-pro 98.8 8.8E-08 1.9E-12 83.6 12.3 96 4-99 259-355 (397)
121 cd00298 ACD_sHsps_p23-like Thi 98.8 1.3E-08 2.8E-13 69.5 5.7 55 178-232 1-62 (80)
122 cd06492 p23_mNUDC_like p23-lik 98.8 3.3E-08 7.2E-13 69.4 7.6 70 176-248 1-86 (87)
123 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1E-07 2.2E-12 84.9 12.1 69 31-99 70-141 (453)
124 cd00189 TPR Tetratricopeptide 98.8 1.7E-07 3.7E-12 64.6 11.0 85 38-122 2-86 (100)
125 KOG1128 Uncharacterized conser 98.8 2.7E-08 5.8E-13 92.0 8.1 112 2-113 485-596 (777)
126 PF09976 TPR_21: Tetratricopep 98.7 4.5E-07 9.8E-12 70.0 13.7 93 4-97 50-145 (145)
127 KOG0553 TPR repeat-containing 98.7 7E-08 1.5E-12 81.1 9.5 97 3-99 116-215 (304)
128 KOG0550 Molecular chaperone (D 98.7 4.1E-08 8.9E-13 85.6 8.3 122 2-123 203-340 (486)
129 cd06495 p23_NUDCD3_like p23-li 98.7 6.8E-08 1.5E-12 69.6 8.0 75 175-249 6-94 (102)
130 KOG2002 TPR-containing nuclear 98.7 1.5E-07 3.3E-12 89.4 12.3 114 4-117 272-389 (1018)
131 KOG2002 TPR-containing nuclear 98.7 1.9E-07 4.1E-12 88.8 12.7 113 1-113 306-423 (1018)
132 cd05804 StaR_like StaR_like; a 98.7 2.6E-07 5.5E-12 81.6 12.6 98 4-101 116-217 (355)
133 PRK11906 transcriptional regul 98.7 3.7E-07 8E-12 81.5 13.1 115 4-118 257-386 (458)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.6E-07 7.8E-12 81.4 12.9 90 8-97 206-295 (395)
135 COG2956 Predicted N-acetylgluc 98.7 4.8E-07 1E-11 76.9 12.5 113 7-119 146-264 (389)
136 PRK14574 hmsH outer membrane p 98.7 4.7E-07 1E-11 87.9 14.0 113 5-118 105-217 (822)
137 PRK10153 DNA-binding transcrip 98.7 5.7E-07 1.2E-11 83.3 13.9 120 3-123 340-472 (517)
138 KOG1129 TPR repeat-containing 98.6 1.6E-07 3.4E-12 80.0 9.0 116 5-120 293-445 (478)
139 TIGR00540 hemY_coli hemY prote 98.6 1.6E-06 3.4E-11 78.5 15.7 118 4-121 86-204 (409)
140 KOG3060 Uncharacterized conser 98.6 2E-06 4.3E-11 70.9 14.5 112 10-121 128-242 (289)
141 COG2956 Predicted N-acetylgluc 98.6 8.3E-07 1.8E-11 75.5 12.6 104 1-104 179-283 (389)
142 KOG4162 Predicted calmodulin-b 98.6 5.2E-07 1.1E-11 84.0 12.4 120 4-123 652-773 (799)
143 COG4235 Cytochrome c biogenesi 98.6 8.3E-07 1.8E-11 75.0 12.5 109 15-123 135-246 (287)
144 PRK02603 photosystem I assembl 98.6 6.3E-07 1.4E-11 71.2 11.1 86 34-119 33-121 (172)
145 PF13424 TPR_12: Tetratricopep 98.6 1.3E-07 2.7E-12 64.9 6.2 64 36-99 5-75 (78)
146 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.5E-07 1.2E-11 66.2 10.1 85 36-120 2-92 (119)
147 KOG1173 Anaphase-promoting com 98.6 3.9E-07 8.5E-12 82.3 10.7 110 3-112 313-422 (611)
148 KOG1310 WD40 repeat protein [G 98.6 2.3E-07 5.1E-12 83.2 8.9 107 2-108 374-483 (758)
149 PRK11906 transcriptional regul 98.6 1.7E-06 3.7E-11 77.3 14.3 91 15-105 317-407 (458)
150 PRK14720 transcript cleavage f 98.6 7.4E-07 1.6E-11 86.3 12.8 113 3-117 32-163 (906)
151 cd05804 StaR_like StaR_like; a 98.6 9.3E-07 2E-11 78.0 12.1 120 4-123 45-205 (355)
152 TIGR00540 hemY_coli hemY prote 98.5 1.3E-06 2.8E-11 79.0 12.5 118 4-122 265-388 (409)
153 COG4105 ComL DNA uptake lipopr 98.5 7.7E-06 1.7E-10 67.8 15.7 117 2-118 34-167 (254)
154 PRK10153 DNA-binding transcrip 98.5 2E-06 4.4E-11 79.7 13.8 88 17-105 399-488 (517)
155 KOG2076 RNA polymerase III tra 98.5 4.4E-06 9.5E-11 79.2 15.8 99 3-101 174-272 (895)
156 PRK10747 putative protoheme IX 98.5 5.4E-06 1.2E-10 74.7 15.8 116 5-120 87-203 (398)
157 KOG1127 TPR repeat-containing 98.5 5.4E-07 1.2E-11 86.0 9.1 63 42-104 568-630 (1238)
158 KOG1129 TPR repeat-containing 98.5 7.2E-07 1.6E-11 76.0 8.7 116 4-119 258-373 (478)
159 PF13424 TPR_12: Tetratricopep 98.5 4.1E-07 8.9E-12 62.3 5.9 64 2-65 5-75 (78)
160 KOG1128 Uncharacterized conser 98.4 7.9E-07 1.7E-11 82.5 8.6 84 40-123 489-572 (777)
161 KOG1840 Kinesin light chain [C 98.4 1.8E-06 3.9E-11 79.1 10.9 121 3-123 242-386 (508)
162 KOG2003 TPR repeat-containing 98.4 4.5E-06 9.8E-11 74.0 12.4 117 2-118 558-708 (840)
163 KOG1127 TPR repeat-containing 98.4 8.7E-07 1.9E-11 84.6 8.5 115 4-118 564-678 (1238)
164 PRK15331 chaperone protein Sic 98.4 2E-06 4.4E-11 66.8 8.4 93 31-123 32-124 (165)
165 PRK10747 putative protoheme IX 98.4 6E-06 1.3E-10 74.4 12.7 115 4-122 265-379 (398)
166 KOG1174 Anaphase-promoting com 98.4 3.2E-06 6.9E-11 74.1 10.2 117 4-120 234-384 (564)
167 KOG1840 Kinesin light chain [C 98.4 2.8E-06 6.1E-11 77.9 9.9 97 4-100 201-313 (508)
168 PF12569 NARP1: NMDA receptor- 98.3 1.2E-05 2.6E-10 74.4 14.0 72 37-108 195-266 (517)
169 PF12895 Apc3: Anaphase-promot 98.3 5.8E-07 1.2E-11 62.6 4.0 75 49-124 2-78 (84)
170 COG4700 Uncharacterized protei 98.3 2.1E-05 4.5E-10 62.3 12.8 101 4-104 91-194 (251)
171 KOG1156 N-terminal acetyltrans 98.3 5.8E-06 1.3E-10 76.0 11.0 116 4-119 43-158 (700)
172 KOG4234 TPR repeat-containing 98.3 5.9E-06 1.3E-10 66.0 9.5 69 5-73 137-205 (271)
173 PF13525 YfiO: Outer membrane 98.3 2.9E-05 6.4E-10 63.4 14.0 118 3-120 43-194 (203)
174 PF12688 TPR_5: Tetratrico pep 98.3 6E-06 1.3E-10 61.5 9.0 87 37-123 2-94 (120)
175 KOG0495 HAT repeat protein [RN 98.3 1.3E-05 2.9E-10 73.9 12.7 81 38-118 653-733 (913)
176 KOG0495 HAT repeat protein [RN 98.3 1.1E-05 2.4E-10 74.4 12.1 117 3-119 652-768 (913)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 70.7 12.9 109 13-124 180-288 (395)
178 KOG1174 Anaphase-promoting com 98.3 8.5E-06 1.8E-10 71.5 10.2 101 3-103 301-401 (564)
179 PRK14720 transcript cleavage f 98.2 2E-05 4.4E-10 76.5 13.3 113 3-116 117-269 (906)
180 KOG3158 HSP90 co-chaperone p23 98.2 3.5E-06 7.7E-11 65.0 5.9 74 175-250 9-95 (180)
181 PF03704 BTAD: Bacterial trans 98.2 6.1E-05 1.3E-09 57.9 13.1 95 4-98 8-124 (146)
182 PRK10866 outer membrane biogen 98.2 9.2E-05 2E-09 62.2 15.0 117 3-119 70-227 (243)
183 PF13428 TPR_14: Tetratricopep 98.2 4.6E-06 9.9E-11 50.6 5.0 40 38-77 3-42 (44)
184 PRK10803 tol-pal system protei 98.1 2.4E-05 5.2E-10 66.4 10.6 87 36-122 142-235 (263)
185 KOG3785 Uncharacterized conser 98.1 1.8E-05 3.9E-10 68.4 9.3 115 6-120 61-201 (557)
186 PF12569 NARP1: NMDA receptor- 98.1 9.8E-05 2.1E-09 68.4 14.8 96 5-100 197-292 (517)
187 PF13431 TPR_17: Tetratricopep 98.1 3.3E-06 7.1E-11 48.2 3.2 31 25-55 2-32 (34)
188 PF14938 SNAP: Soluble NSF att 98.1 2.9E-05 6.3E-10 66.7 10.6 103 2-104 114-230 (282)
189 COG0071 IbpA Molecular chapero 98.1 8.9E-06 1.9E-10 62.9 6.5 70 174-243 41-136 (146)
190 PF00515 TPR_1: Tetratricopept 98.1 5E-06 1.1E-10 47.2 3.8 32 71-102 2-33 (34)
191 cd06472 ACD_ScHsp26_like Alpha 98.1 1.2E-05 2.6E-10 57.0 6.4 58 175-232 1-74 (92)
192 PF04733 Coatomer_E: Coatomer 98.1 5.1E-05 1.1E-09 65.4 11.4 112 8-119 137-250 (290)
193 KOG4648 Uncharacterized conser 98.1 7.4E-06 1.6E-10 70.4 6.0 66 39-104 100-165 (536)
194 COG4785 NlpI Lipoprotein NlpI, 98.1 1.9E-05 4.2E-10 63.9 8.0 68 1-68 98-165 (297)
195 PF13431 TPR_17: Tetratricopep 98.1 5.2E-06 1.1E-10 47.4 3.3 32 59-90 2-33 (34)
196 PF07719 TPR_2: Tetratricopept 98.0 1E-05 2.2E-10 45.8 4.5 33 71-103 2-34 (34)
197 PF13428 TPR_14: Tetratricopep 98.0 1E-05 2.2E-10 49.0 4.7 42 71-112 2-43 (44)
198 PF00515 TPR_1: Tetratricopept 98.0 1.1E-05 2.3E-10 45.9 4.3 32 37-68 2-33 (34)
199 KOG2265 Nuclear distribution p 98.0 7E-06 1.5E-10 63.6 4.3 73 173-248 18-105 (179)
200 PF04733 Coatomer_E: Coatomer 98.0 6.9E-05 1.5E-09 64.6 10.9 94 16-109 181-275 (290)
201 KOG2376 Signal recognition par 98.0 0.00022 4.7E-09 65.3 13.6 89 6-97 83-202 (652)
202 KOG3785 Uncharacterized conser 98.0 0.0001 2.2E-09 63.9 10.6 104 10-117 30-134 (557)
203 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 7E-05 1.5E-09 47.1 6.9 50 71-120 2-51 (53)
204 PF12968 DUF3856: Domain of Un 97.9 0.00018 3.9E-09 52.7 9.9 93 6-98 13-128 (144)
205 PF14938 SNAP: Soluble NSF att 97.9 5.4E-05 1.2E-09 65.0 8.6 94 7-100 79-185 (282)
206 KOG1130 Predicted G-alpha GTPa 97.9 7.6E-06 1.6E-10 71.8 3.0 99 2-100 195-305 (639)
207 COG3118 Thioredoxin domain-con 97.9 0.00052 1.1E-08 58.1 13.5 115 4-118 136-286 (304)
208 PF13512 TPR_18: Tetratricopep 97.9 0.00011 2.3E-09 56.0 8.4 71 35-105 9-82 (142)
209 COG1729 Uncharacterized protei 97.9 0.00013 2.8E-09 61.1 9.6 84 39-122 144-233 (262)
210 PF07719 TPR_2: Tetratricopept 97.9 4.3E-05 9.4E-10 43.1 4.9 32 37-68 2-33 (34)
211 KOG4340 Uncharacterized conser 97.9 0.00036 7.7E-09 59.3 12.1 107 10-120 18-124 (459)
212 KOG2053 Mitochondrial inherita 97.8 0.00063 1.4E-08 65.0 14.4 114 6-120 13-126 (932)
213 PF06552 TOM20_plant: Plant sp 97.8 0.0003 6.4E-09 55.5 9.7 70 2-71 25-115 (186)
214 KOG4340 Uncharacterized conser 97.7 9.6E-05 2.1E-09 62.6 7.0 94 3-96 145-267 (459)
215 KOG2376 Signal recognition par 97.7 0.00043 9.3E-09 63.4 11.5 99 4-105 14-145 (652)
216 KOG3364 Membrane protein invol 97.7 0.0013 2.7E-08 49.4 11.7 86 35-120 31-121 (149)
217 cd06471 ACD_LpsHSP_like Group 97.7 0.00013 2.7E-09 51.8 6.0 57 175-232 2-75 (93)
218 PRK10941 hypothetical protein; 97.7 0.00054 1.2E-08 58.2 10.5 73 36-108 181-253 (269)
219 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0024 5.3E-08 50.3 14.1 111 4-114 97-212 (291)
220 COG2976 Uncharacterized protei 97.6 0.0015 3.2E-08 52.2 11.3 99 4-103 91-192 (207)
221 KOG1130 Predicted G-alpha GTPa 97.6 0.00013 2.9E-09 64.3 5.9 95 4-98 19-123 (639)
222 PF15015 NYD-SP12_N: Spermatog 97.6 0.0008 1.7E-08 59.5 10.3 93 5-97 179-289 (569)
223 KOG0546 HSP90 co-chaperone CPR 97.5 0.00015 3.2E-09 62.7 5.4 118 4-121 224-360 (372)
224 COG3071 HemY Uncharacterized e 97.5 0.004 8.7E-08 54.7 14.1 117 4-120 86-203 (400)
225 PF13181 TPR_8: Tetratricopept 97.5 0.00015 3.4E-09 40.8 3.6 31 71-101 2-32 (34)
226 PF00011 HSP20: Hsp20/alpha cr 97.5 0.00039 8.5E-09 50.1 6.3 66 177-242 1-90 (102)
227 PF04781 DUF627: Protein of un 97.5 0.0022 4.8E-08 46.5 10.0 92 8-99 2-107 (111)
228 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.6E-08 54.2 12.9 101 4-104 3-104 (280)
229 KOG4507 Uncharacterized conser 97.5 0.0003 6.4E-09 64.5 6.5 108 7-114 612-720 (886)
230 cd06464 ACD_sHsps-like Alpha-c 97.4 0.00043 9.3E-09 48.1 6.0 56 177-232 1-70 (88)
231 KOG2471 TPR repeat-containing 97.4 0.00035 7.6E-09 62.8 6.7 113 3-115 241-380 (696)
232 PF13181 TPR_8: Tetratricopept 97.4 0.00035 7.5E-09 39.4 4.0 31 37-67 2-32 (34)
233 KOG2796 Uncharacterized conser 97.4 0.0015 3.2E-08 54.7 9.0 98 6-103 216-319 (366)
234 KOG4555 TPR repeat-containing 97.4 0.0032 7E-08 47.2 10.0 70 2-71 77-150 (175)
235 KOG4642 Chaperone-dependent E3 97.4 0.00026 5.6E-09 58.2 4.5 79 40-118 14-92 (284)
236 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0063 1.4E-07 47.9 12.6 93 11-103 139-235 (291)
237 KOG4814 Uncharacterized conser 97.3 0.0033 7.2E-08 58.4 11.6 96 4-99 356-457 (872)
238 PRK10743 heat shock protein Ib 97.3 0.00097 2.1E-08 50.8 7.0 67 175-241 36-125 (137)
239 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0017 3.8E-08 40.8 6.8 44 37-80 2-45 (53)
240 PRK10941 hypothetical protein; 97.3 0.0036 7.8E-08 53.2 11.0 75 5-79 184-258 (269)
241 KOG3081 Vesicle coat complex C 97.3 0.0076 1.6E-07 50.5 12.4 83 37-119 170-256 (299)
242 COG3071 HemY Uncharacterized e 97.3 0.0027 5.9E-08 55.7 10.2 111 6-120 267-377 (400)
243 KOG0545 Aryl-hydrocarbon recep 97.2 0.0053 1.1E-07 50.9 10.7 70 5-74 233-302 (329)
244 PF13174 TPR_6: Tetratricopept 97.2 0.00075 1.6E-08 37.5 4.2 31 72-102 2-32 (33)
245 cd06479 ACD_HspB7_like Alpha c 97.2 0.0013 2.9E-08 45.3 6.2 56 177-232 2-62 (81)
246 KOG4151 Myosin assembly protei 97.2 0.0026 5.6E-08 60.3 10.0 119 3-121 54-178 (748)
247 KOG3824 Huntingtin interacting 97.2 0.0014 3.1E-08 55.9 7.4 76 5-80 119-194 (472)
248 COG4700 Uncharacterized protei 97.2 0.011 2.4E-07 47.1 11.5 110 8-118 62-174 (251)
249 KOG1941 Acetylcholine receptor 97.2 0.0015 3.3E-08 56.9 7.3 96 4-99 124-235 (518)
250 PRK11597 heat shock chaperone 97.2 0.0017 3.8E-08 49.6 6.9 66 175-240 34-122 (142)
251 PF03704 BTAD: Bacterial trans 97.2 0.0041 8.8E-08 47.7 9.1 61 4-64 64-124 (146)
252 PF09613 HrpB1_HrpK: Bacterial 97.2 0.0096 2.1E-07 46.3 11.0 111 3-115 11-121 (160)
253 PF10300 DUF3808: Protein of u 97.1 0.0039 8.5E-08 57.4 10.4 86 16-101 247-336 (468)
254 COG4105 ComL DNA uptake lipopr 97.1 0.03 6.6E-07 46.8 14.5 118 3-120 72-220 (254)
255 PF10300 DUF3808: Protein of u 97.1 0.0055 1.2E-07 56.5 11.3 94 5-98 270-368 (468)
256 KOG2796 Uncharacterized conser 97.1 0.0072 1.6E-07 50.6 10.5 118 6-123 181-305 (366)
257 cd06475 ACD_HspB1_like Alpha c 97.1 0.0012 2.6E-08 46.1 5.1 57 176-232 3-67 (86)
258 KOG1915 Cell cycle control pro 97.1 0.012 2.6E-07 53.2 12.3 101 4-104 75-175 (677)
259 cd06470 ACD_IbpA-B_like Alpha- 97.1 0.002 4.2E-08 45.4 6.1 57 176-232 3-74 (90)
260 PF05843 Suf: Suppressor of fo 97.1 0.015 3.3E-07 49.9 12.6 108 4-111 37-148 (280)
261 PF04184 ST7: ST7 protein; In 97.0 0.0055 1.2E-07 55.6 9.8 104 8-113 174-304 (539)
262 cd06498 ACD_alphaB-crystallin_ 97.0 0.0027 5.8E-08 44.1 6.2 53 180-232 4-64 (84)
263 cd06497 ACD_alphaA-crystallin_ 97.0 0.0023 4.9E-08 44.7 5.8 56 177-232 4-67 (86)
264 smart00028 TPR Tetratricopepti 97.0 0.0017 3.6E-08 34.9 4.2 31 72-102 3-33 (34)
265 KOG3824 Huntingtin interacting 97.0 0.0042 9E-08 53.1 8.2 71 38-108 118-188 (472)
266 KOG0551 Hsp90 co-chaperone CNS 97.0 0.011 2.4E-07 50.9 10.7 67 3-69 120-186 (390)
267 PF13174 TPR_6: Tetratricopept 97.0 0.0016 3.5E-08 36.1 4.0 31 38-68 2-32 (33)
268 KOG1915 Cell cycle control pro 97.0 0.022 4.8E-07 51.5 12.8 98 3-101 405-502 (677)
269 KOG0376 Serine-threonine phosp 96.9 0.0011 2.5E-08 59.4 4.4 79 5-83 41-119 (476)
270 PLN03081 pentatricopeptide (PP 96.9 0.017 3.6E-07 56.0 12.6 88 9-98 469-556 (697)
271 KOG1586 Protein required for f 96.8 0.055 1.2E-06 44.7 12.8 101 5-105 116-230 (288)
272 KOG1586 Protein required for f 96.8 0.057 1.2E-06 44.6 12.8 94 11-104 82-188 (288)
273 KOG2610 Uncharacterized conser 96.7 0.02 4.4E-07 49.6 10.5 96 9-104 110-209 (491)
274 PRK04841 transcriptional regul 96.7 0.018 3.9E-07 57.3 11.9 94 6-99 456-560 (903)
275 PF14561 TPR_20: Tetratricopep 96.7 0.015 3.2E-07 40.9 8.1 47 22-68 8-54 (90)
276 PRK04841 transcriptional regul 96.7 0.015 3.3E-07 57.8 11.2 96 5-100 494-603 (903)
277 PLN03218 maturation of RBCL 1; 96.7 0.046 1E-06 55.3 14.4 87 11-98 588-677 (1060)
278 PF14561 TPR_20: Tetratricopep 96.7 0.026 5.6E-07 39.7 9.3 66 55-120 7-74 (90)
279 PF13176 TPR_7: Tetratricopept 96.7 0.0026 5.5E-08 36.5 3.4 25 73-97 2-26 (36)
280 cd06478 ACD_HspB4-5-6 Alpha-cr 96.7 0.0059 1.3E-07 42.3 5.8 53 180-232 4-64 (83)
281 PF13176 TPR_7: Tetratricopept 96.7 0.0041 8.8E-08 35.6 4.1 28 38-65 1-28 (36)
282 KOG1585 Protein required for f 96.7 0.068 1.5E-06 44.5 12.5 101 3-103 32-143 (308)
283 smart00028 TPR Tetratricopepti 96.6 0.0036 7.8E-08 33.5 3.8 31 38-68 3-33 (34)
284 PF09986 DUF2225: Uncharacteri 96.6 0.033 7.2E-07 45.8 10.9 90 14-103 89-198 (214)
285 PLN03218 maturation of RBCL 1; 96.5 0.081 1.7E-06 53.6 14.9 93 6-99 546-643 (1060)
286 cd06526 metazoan_ACD Alpha-cry 96.5 0.0081 1.8E-07 41.5 5.7 50 183-232 7-64 (83)
287 PLN03081 pentatricopeptide (PP 96.5 0.021 4.6E-07 55.3 10.5 107 6-113 395-537 (697)
288 PF13281 DUF4071: Domain of un 96.5 0.098 2.1E-06 46.5 13.6 101 5-105 182-340 (374)
289 KOG2396 HAT (Half-A-TPR) repea 96.5 0.052 1.1E-06 49.4 11.8 89 20-108 89-178 (568)
290 COG4976 Predicted methyltransf 96.5 0.0057 1.2E-07 50.2 5.3 61 10-70 3-63 (287)
291 TIGR02561 HrpB1_HrpK type III 96.4 0.043 9.3E-07 42.1 9.5 85 4-88 12-96 (153)
292 COG4976 Predicted methyltransf 96.4 0.0053 1.2E-07 50.3 4.7 60 45-104 4-63 (287)
293 PF10602 RPN7: 26S proteasome 96.4 0.067 1.5E-06 42.6 11.1 96 3-98 37-141 (177)
294 KOG1070 rRNA processing protei 96.4 0.046 1E-06 55.2 11.7 104 7-110 1535-1640(1710)
295 KOG2053 Mitochondrial inherita 96.3 0.098 2.1E-06 50.6 13.3 100 5-105 46-145 (932)
296 KOG3081 Vesicle coat complex C 96.3 0.095 2.1E-06 44.1 11.6 90 15-104 186-276 (299)
297 PRK13184 pknD serine/threonine 96.3 0.047 1E-06 54.1 11.3 110 8-118 481-600 (932)
298 PF07079 DUF1347: Protein of u 96.3 0.18 3.8E-06 45.6 13.7 117 2-119 379-545 (549)
299 cd06476 ACD_HspB2_like Alpha c 96.2 0.016 3.4E-07 40.2 5.6 52 181-232 5-64 (83)
300 KOG2471 TPR repeat-containing 96.2 0.0078 1.7E-07 54.4 4.8 79 5-83 286-382 (696)
301 PLN03077 Protein ECB2; Provisi 96.1 0.063 1.4E-06 53.3 11.6 91 5-96 557-651 (857)
302 PF10579 Rapsyn_N: Rapsyn N-te 96.1 0.069 1.5E-06 36.3 7.9 63 2-64 6-71 (80)
303 KOG2610 Uncharacterized conser 96.1 0.058 1.3E-06 46.9 9.4 84 13-96 186-273 (491)
304 COG2912 Uncharacterized conser 96.0 0.051 1.1E-06 45.9 8.7 71 37-107 182-252 (269)
305 cd06481 ACD_HspB9_like Alpha c 96.0 0.018 3.9E-07 40.3 4.9 52 181-232 5-68 (87)
306 PF04184 ST7: ST7 protein; In 95.9 0.18 3.9E-06 46.1 12.3 62 37-98 260-323 (539)
307 PLN03077 Protein ECB2; Provisi 95.9 0.088 1.9E-06 52.3 11.6 110 8-119 595-706 (857)
308 cd06482 ACD_HspB10 Alpha cryst 95.9 0.021 4.6E-07 39.8 5.0 52 181-232 6-68 (87)
309 KOG3364 Membrane protein invol 95.8 0.13 2.7E-06 38.9 9.1 75 4-78 34-113 (149)
310 COG2912 Uncharacterized conser 95.7 0.1 2.2E-06 44.1 9.0 73 7-79 186-258 (269)
311 KOG0530 Protein farnesyltransf 95.6 0.25 5.5E-06 41.5 11.1 103 13-115 54-158 (318)
312 PF09613 HrpB1_HrpK: Bacterial 95.6 0.26 5.6E-06 38.4 10.3 83 37-119 11-93 (160)
313 KOG1941 Acetylcholine receptor 95.5 0.085 1.8E-06 46.3 8.4 95 4-98 164-274 (518)
314 PF02259 FAT: FAT domain; Int 95.5 0.42 9E-06 41.8 13.2 118 2-119 146-307 (352)
315 cd06477 ACD_HspB3_Like Alpha c 95.5 0.045 9.8E-07 37.8 5.4 53 180-232 4-64 (83)
316 KOG1585 Protein required for f 95.5 0.2 4.2E-06 41.8 9.8 94 6-99 114-219 (308)
317 KOG1308 Hsp70-interacting prot 95.3 0.0036 7.9E-08 54.1 -0.5 70 48-117 126-195 (377)
318 KOG4507 Uncharacterized conser 95.3 0.11 2.3E-06 48.4 8.4 73 5-77 645-717 (886)
319 PF08190 PIH1: pre-RNA process 95.2 0.11 2.3E-06 45.6 8.4 49 181-232 259-308 (328)
320 PF12862 Apc5: Anaphase-promot 95.2 0.15 3.3E-06 36.0 7.6 56 11-66 7-71 (94)
321 KOG1070 rRNA processing protei 95.2 0.38 8.2E-06 49.0 12.5 110 3-112 1565-1680(1710)
322 PF13374 TPR_10: Tetratricopep 95.1 0.055 1.2E-06 31.4 4.4 27 38-64 4-30 (42)
323 PF04910 Tcf25: Transcriptiona 95.1 0.33 7.2E-06 43.2 11.1 79 27-105 31-139 (360)
324 PF08631 SPO22: Meiosis protei 95.0 1.3 2.7E-05 38.0 14.0 100 2-101 35-152 (278)
325 PF13281 DUF4071: Domain of un 94.9 0.65 1.4E-05 41.4 12.3 96 7-102 146-258 (374)
326 PRK15180 Vi polysaccharide bio 94.9 0.42 9.2E-06 43.6 11.1 97 9-105 296-392 (831)
327 KOG3617 WD40 and TPR repeat-co 94.9 0.25 5.5E-06 47.8 10.0 96 4-99 860-996 (1416)
328 PF02259 FAT: FAT domain; Int 94.8 0.65 1.4E-05 40.6 12.2 99 4-102 186-341 (352)
329 COG3914 Spy Predicted O-linked 94.8 0.55 1.2E-05 43.7 11.7 99 11-109 76-181 (620)
330 PF13374 TPR_10: Tetratricopep 94.5 0.092 2E-06 30.4 4.3 31 2-32 2-32 (42)
331 KOG2047 mRNA splicing factor [ 94.5 1.5 3.2E-05 41.5 13.8 99 2-100 425-541 (835)
332 PF10373 EST1_DNA_bind: Est1 D 94.2 0.25 5.3E-06 41.9 7.9 62 55-116 1-62 (278)
333 PF12862 Apc5: Anaphase-promot 94.1 0.25 5.4E-06 34.8 6.5 56 46-101 8-72 (94)
334 KOG4379 Uncharacterized conser 94.0 0.13 2.9E-06 46.0 5.8 73 175-251 291-377 (596)
335 COG0790 FOG: TPR repeat, SEL1 94.0 2.5 5.5E-05 36.0 13.9 104 4-111 111-230 (292)
336 PF09986 DUF2225: Uncharacteri 94.0 0.87 1.9E-05 37.5 10.3 63 16-78 139-208 (214)
337 COG5191 Uncharacterized conser 93.9 0.18 3.9E-06 43.5 6.2 84 25-108 96-180 (435)
338 PF07079 DUF1347: Protein of u 93.7 0.51 1.1E-05 42.8 8.9 57 4-61 464-520 (549)
339 COG2976 Uncharacterized protei 93.6 2.1 4.6E-05 34.5 11.3 61 37-97 90-153 (207)
340 PF08424 NRDE-2: NRDE-2, neces 93.5 2.3 5.1E-05 37.2 12.9 85 23-107 6-102 (321)
341 PF14863 Alkyl_sulf_dimr: Alky 93.5 0.34 7.3E-06 37.1 6.6 52 36-87 70-121 (141)
342 KOG2047 mRNA splicing factor [ 93.4 1.9 4E-05 40.9 12.3 93 9-101 484-581 (835)
343 COG3898 Uncharacterized membra 93.3 1.2 2.7E-05 39.7 10.5 91 6-98 124-216 (531)
344 PF10373 EST1_DNA_bind: Est1 D 93.3 1.9 4.1E-05 36.4 11.8 62 21-82 1-62 (278)
345 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.14 3.1E-06 29.7 3.3 29 71-99 2-30 (38)
346 PF10516 SHNi-TPR: SHNi-TPR; 93.3 0.15 3.3E-06 29.6 3.4 29 37-65 2-30 (38)
347 KOG1550 Extracellular protein 93.3 1.8 3.8E-05 41.0 12.5 92 5-100 291-394 (552)
348 PF07720 TPR_3: Tetratricopept 93.2 0.29 6.3E-06 28.0 4.4 31 72-102 3-35 (36)
349 TIGR02561 HrpB1_HrpK type III 93.2 1.4 3E-05 33.9 9.4 81 39-119 13-93 (153)
350 COG3629 DnrI DNA-binding trans 93.1 1.7 3.6E-05 37.3 10.9 64 36-99 153-216 (280)
351 KOG2561 Adaptor protein NUB1, 93.1 0.41 8.8E-06 43.1 7.3 98 1-98 162-295 (568)
352 KOG0529 Protein geranylgeranyl 93.0 1.8 3.9E-05 38.7 11.1 104 14-117 87-196 (421)
353 KOG1550 Extracellular protein 92.8 2.1 4.6E-05 40.5 12.2 96 15-116 262-372 (552)
354 cd06480 ACD_HspB8_like Alpha-c 92.4 0.4 8.6E-06 33.7 5.2 52 181-232 13-72 (91)
355 PF07721 TPR_4: Tetratricopept 92.3 0.18 4E-06 26.3 2.6 22 72-93 3-24 (26)
356 PF04910 Tcf25: Transcriptiona 91.9 2.2 4.7E-05 38.1 10.6 99 4-102 105-225 (360)
357 PF04781 DUF627: Protein of un 91.9 2 4.4E-05 31.3 8.4 64 42-105 2-79 (111)
358 PF12968 DUF3856: Domain of Un 91.7 4.2 9E-05 30.2 9.9 78 37-116 8-106 (144)
359 COG3914 Spy Predicted O-linked 91.6 2.7 6E-05 39.3 10.9 101 13-113 41-145 (620)
360 PF08631 SPO22: Meiosis protei 91.5 5.5 0.00012 34.0 12.4 96 12-107 3-124 (278)
361 PF07721 TPR_4: Tetratricopept 91.4 0.28 6E-06 25.7 2.7 24 37-60 2-25 (26)
362 KOG2300 Uncharacterized conser 91.3 4.8 0.0001 37.0 11.8 104 2-105 7-124 (629)
363 COG3898 Uncharacterized membra 91.1 7.9 0.00017 34.8 12.7 52 51-102 244-295 (531)
364 cd02682 MIT_AAA_Arch MIT: doma 91.1 1.1 2.5E-05 30.2 6.1 29 2-30 6-34 (75)
365 KOG2396 HAT (Half-A-TPR) repea 91.0 2.8 6.1E-05 38.6 10.2 74 8-81 111-188 (568)
366 KOG4814 Uncharacterized conser 91.0 1.7 3.8E-05 41.1 9.0 70 38-107 356-431 (872)
367 PF07720 TPR_3: Tetratricopept 91.0 0.93 2E-05 25.9 4.8 29 39-67 4-34 (36)
368 KOG2300 Uncharacterized conser 90.4 7.6 0.00016 35.8 12.2 94 4-100 369-475 (629)
369 PF10255 Paf67: RNA polymerase 90.3 0.69 1.5E-05 41.7 5.8 58 39-97 125-191 (404)
370 COG5191 Uncharacterized conser 90.3 0.84 1.8E-05 39.5 6.0 71 4-74 109-180 (435)
371 PHA02537 M terminase endonucle 90.3 0.72 1.6E-05 38.3 5.5 107 12-119 93-226 (230)
372 KOG2422 Uncharacterized conser 90.2 5 0.00011 37.6 11.2 94 14-107 250-380 (665)
373 PF10602 RPN7: 26S proteasome 89.6 4.8 0.0001 32.0 9.6 65 36-100 36-103 (177)
374 PF10345 Cohesin_load: Cohesin 89.5 16 0.00034 35.1 14.7 114 3-117 60-188 (608)
375 COG3629 DnrI DNA-binding trans 89.5 2.6 5.6E-05 36.1 8.3 62 4-65 155-216 (280)
376 COG3947 Response regulator con 89.4 1.6 3.4E-05 37.5 6.8 60 38-97 281-340 (361)
377 COG4941 Predicted RNA polymera 89.3 3.3 7E-05 36.3 8.8 97 15-112 309-407 (415)
378 COG0790 FOG: TPR repeat, SEL1 89.3 12 0.00025 31.9 12.5 81 17-102 170-269 (292)
379 PRK13184 pknD serine/threonine 89.2 5 0.00011 40.3 11.2 88 17-105 534-626 (932)
380 KOG0546 HSP90 co-chaperone CPR 89.0 0.4 8.7E-06 41.9 3.2 77 7-83 280-356 (372)
381 PF08424 NRDE-2: NRDE-2, neces 88.9 8 0.00017 33.8 11.4 81 18-98 47-130 (321)
382 KOG1258 mRNA processing protei 88.9 13 0.00028 35.0 12.9 97 10-106 305-402 (577)
383 PF14863 Alkyl_sulf_dimr: Alky 88.4 2.7 5.8E-05 32.1 7.0 50 71-120 71-120 (141)
384 KOG0530 Protein farnesyltransf 88.4 5.2 0.00011 33.9 9.1 86 16-101 92-178 (318)
385 COG4455 ImpE Protein of avirul 88.3 5.7 0.00012 32.8 9.1 63 8-70 7-69 (273)
386 TIGR03504 FimV_Cterm FimV C-te 88.3 1.8 3.8E-05 26.0 4.8 25 74-98 3-27 (44)
387 KOG1310 WD40 repeat protein [G 88.2 1.8 4E-05 40.1 6.9 82 42-123 380-464 (758)
388 COG4455 ImpE Protein of avirul 88.1 4.1 8.9E-05 33.6 8.2 61 45-105 10-70 (273)
389 PF09670 Cas_Cas02710: CRISPR- 88.1 11 0.00023 34.0 11.8 62 4-65 133-198 (379)
390 PF11817 Foie-gras_1: Foie gra 88.0 2.8 6E-05 35.2 7.7 61 36-96 178-244 (247)
391 KOG1839 Uncharacterized protei 88.0 1.7 3.7E-05 44.2 7.1 100 1-100 972-1087(1236)
392 PF10255 Paf67: RNA polymerase 87.8 3 6.6E-05 37.6 8.0 96 7-102 127-231 (404)
393 KOG2041 WD40 repeat protein [G 87.3 3.7 8E-05 39.5 8.4 79 2-92 796-874 (1189)
394 COG3118 Thioredoxin domain-con 87.2 5 0.00011 34.5 8.6 61 36-96 134-194 (304)
395 COG3947 Response regulator con 87.2 2.3 5E-05 36.5 6.5 58 5-62 282-339 (361)
396 PRK15180 Vi polysaccharide bio 86.9 2.7 5.8E-05 38.6 7.1 96 8-103 329-424 (831)
397 PF11817 Foie-gras_1: Foie gra 86.4 5.9 0.00013 33.2 8.8 50 71-120 179-234 (247)
398 smart00386 HAT HAT (Half-A-TPR 85.8 2.5 5.5E-05 22.4 4.3 29 16-44 1-29 (33)
399 PF10579 Rapsyn_N: Rapsyn N-te 85.7 9.1 0.0002 26.1 7.7 60 38-97 8-70 (80)
400 PF05455 GvpH: GvpH; InterPro 85.5 3.2 7E-05 32.8 6.1 66 175-242 93-170 (177)
401 KOG3807 Predicted membrane pro 85.4 12 0.00025 33.0 9.9 93 7-101 189-306 (556)
402 KOG0686 COP9 signalosome, subu 85.2 11 0.00023 34.0 9.8 95 4-98 152-257 (466)
403 KOG2581 26S proteasome regulat 84.8 17 0.00037 32.8 10.8 69 36-104 209-281 (493)
404 KOG3617 WD40 and TPR repeat-co 84.8 5.2 0.00011 39.3 8.2 77 12-98 810-886 (1416)
405 PF09205 DUF1955: Domain of un 84.7 12 0.00026 28.5 8.5 34 66-99 116-149 (161)
406 PF11207 DUF2989: Protein of u 84.5 5.2 0.00011 32.5 7.0 71 19-90 123-198 (203)
407 KOG0529 Protein geranylgeranyl 84.2 29 0.00062 31.4 12.0 107 11-117 37-158 (421)
408 PF06957 COPI_C: Coatomer (COP 84.1 8.9 0.00019 34.9 9.1 102 4-105 206-335 (422)
409 PF11207 DUF2989: Protein of u 83.8 12 0.00027 30.3 8.9 70 52-123 122-197 (203)
410 PF04212 MIT: MIT (microtubule 83.5 3 6.5E-05 27.4 4.6 28 3-30 6-33 (69)
411 KOG1914 mRNA cleavage and poly 83.2 16 0.00034 34.2 10.3 73 26-99 10-82 (656)
412 cd02683 MIT_1 MIT: domain cont 83.2 2.4 5.1E-05 28.8 4.0 28 3-30 7-34 (77)
413 KOG1839 Uncharacterized protei 83.0 2.4 5.3E-05 43.1 5.5 98 2-99 932-1044(1236)
414 PF07219 HemY_N: HemY protein 82.9 6.4 0.00014 28.5 6.5 44 41-84 64-107 (108)
415 PF10345 Cohesin_load: Cohesin 82.2 21 0.00045 34.2 11.5 90 5-94 304-428 (608)
416 cd02681 MIT_calpain7_1 MIT: do 82.1 2.6 5.5E-05 28.6 3.8 30 2-31 6-35 (76)
417 COG4649 Uncharacterized protei 81.9 25 0.00054 28.2 12.0 94 5-98 97-195 (221)
418 TIGR03504 FimV_Cterm FimV C-te 81.8 3.5 7.5E-05 24.7 3.9 25 40-64 3-27 (44)
419 PF10952 DUF2753: Protein of u 81.7 9.5 0.00021 28.4 6.8 103 4-112 3-124 (140)
420 cd02682 MIT_AAA_Arch MIT: doma 80.7 9.3 0.0002 25.8 6.1 28 86-113 29-56 (75)
421 PF04053 Coatomer_WDAD: Coatom 80.5 22 0.00048 32.7 10.5 32 68-99 345-376 (443)
422 KOG4563 Cell cycle-regulated h 80.0 4.5 9.8E-05 35.7 5.5 54 3-56 42-103 (400)
423 KOG0985 Vesicle coat protein c 79.6 18 0.00039 36.6 9.8 102 4-113 1196-1322(1666)
424 KOG3783 Uncharacterized conser 79.5 21 0.00046 33.3 9.8 68 37-104 450-525 (546)
425 cd02680 MIT_calpain7_2 MIT: do 79.4 3.9 8.5E-05 27.6 4.0 28 4-31 8-35 (75)
426 PF11846 DUF3366: Domain of un 79.2 12 0.00025 30.0 7.5 50 52-102 127-176 (193)
427 COG2909 MalT ATP-dependent tra 79.1 31 0.00067 34.2 11.2 95 6-100 419-527 (894)
428 KOG0292 Vesicle coat complex C 79.0 43 0.00093 33.4 12.0 104 4-107 993-1121(1202)
429 cd02678 MIT_VPS4 MIT: domain c 78.8 4.6 0.0001 27.1 4.2 28 3-30 7-34 (75)
430 PF12739 TRAPPC-Trs85: ER-Golg 78.1 26 0.00057 31.8 10.2 96 4-99 210-329 (414)
431 PF15015 NYD-SP12_N: Spermatog 78.0 5.8 0.00013 35.9 5.6 59 7-65 233-291 (569)
432 TIGR02710 CRISPR-associated pr 77.8 43 0.00094 30.1 11.1 55 6-60 134-195 (380)
433 smart00745 MIT Microtubule Int 75.5 6.4 0.00014 26.3 4.3 17 12-28 18-34 (77)
434 cd02684 MIT_2 MIT: domain cont 75.0 6.9 0.00015 26.3 4.2 27 4-30 8-34 (75)
435 KOG1914 mRNA cleavage and poly 74.6 44 0.00094 31.5 10.3 92 10-101 409-503 (656)
436 COG2909 MalT ATP-dependent tra 74.6 45 0.00098 33.1 11.0 91 4-94 460-563 (894)
437 cd02656 MIT MIT: domain contai 74.4 7.1 0.00015 26.0 4.3 27 4-30 8-34 (75)
438 PRK15490 Vi polysaccharide bio 72.5 77 0.0017 30.2 11.8 88 5-94 8-98 (578)
439 PF12854 PPR_1: PPR repeat 72.2 10 0.00022 21.0 3.9 27 35-61 6-32 (34)
440 PF11846 DUF3366: Domain of un 71.4 19 0.0004 28.8 6.8 49 18-67 127-175 (193)
441 COG3014 Uncharacterized protei 71.2 33 0.00071 30.4 8.3 27 37-63 126-152 (449)
442 cd02677 MIT_SNX15 MIT: domain 71.1 9.5 0.00021 25.7 4.2 26 5-30 9-34 (75)
443 KOG3783 Uncharacterized conser 70.6 38 0.00082 31.7 9.1 93 19-111 250-344 (546)
444 PF13226 DUF4034: Domain of un 70.4 69 0.0015 27.5 11.1 111 8-118 6-147 (277)
445 PF04053 Coatomer_WDAD: Coatom 69.8 65 0.0014 29.7 10.6 75 11-90 327-409 (443)
446 KOG0985 Vesicle coat protein c 68.9 58 0.0013 33.3 10.3 55 4-63 1106-1160(1666)
447 COG5159 RPN6 26S proteasome re 68.1 52 0.0011 28.5 8.8 92 6-97 7-152 (421)
448 PF03745 DUF309: Domain of unk 67.7 30 0.00065 22.3 6.9 53 6-58 3-61 (62)
449 PF02064 MAS20: MAS20 protein 67.0 15 0.00032 27.3 4.8 29 7-35 68-96 (121)
450 KOG3807 Predicted membrane pro 66.3 96 0.0021 27.5 10.6 62 39-100 278-341 (556)
451 KOG4563 Cell cycle-regulated h 65.2 15 0.00032 32.6 5.2 58 38-95 43-108 (400)
452 PF08238 Sel1: Sel1 repeat; I 64.1 19 0.00042 19.9 4.1 29 71-99 2-37 (39)
453 KOG0890 Protein kinase of the 64.0 1E+02 0.0023 34.2 11.7 100 2-103 1670-1788(2382)
454 TIGR02508 type_III_yscG type I 64.0 48 0.001 23.9 6.6 42 72-118 41-82 (115)
455 PF04010 DUF357: Protein of un 63.7 10 0.00022 25.6 3.1 27 1-27 34-60 (75)
456 KOG1463 26S proteasome regulat 63.4 1.1E+02 0.0024 27.2 10.4 109 7-118 214-332 (411)
457 COG2015 Alkyl sulfatase and re 63.3 19 0.00041 33.3 5.6 54 37-90 453-506 (655)
458 KOG0276 Vesicle coat complex C 63.2 23 0.00049 33.7 6.2 67 24-99 629-695 (794)
459 cd00280 TRFH Telomeric Repeat 62.8 80 0.0017 25.4 13.0 111 2-113 13-153 (200)
460 KOG2041 WD40 repeat protein [G 62.1 33 0.00071 33.4 7.1 26 71-96 797-822 (1189)
461 PF15469 Sec5: Exocyst complex 61.3 79 0.0017 24.9 8.8 19 48-66 98-116 (182)
462 PF09205 DUF1955: Domain of un 61.0 73 0.0016 24.4 7.9 62 4-65 87-149 (161)
463 KOG3591 Alpha crystallins [Pos 60.1 30 0.00065 27.4 5.7 52 181-232 70-129 (173)
464 KOG4151 Myosin assembly protei 59.3 14 0.0003 35.9 4.3 64 11-74 102-165 (748)
465 KOG0687 26S proteasome regulat 59.3 1.3E+02 0.0028 26.6 10.8 94 3-98 105-209 (393)
466 PF04212 MIT: MIT (microtubule 59.1 26 0.00056 22.8 4.5 18 46-63 15-32 (69)
467 KOG2422 Uncharacterized conser 58.3 1.3E+02 0.0028 28.7 10.1 93 4-96 286-404 (665)
468 PF13226 DUF4034: Domain of un 58.1 78 0.0017 27.2 8.2 68 20-87 61-150 (277)
469 PF13041 PPR_2: PPR repeat fam 58.0 33 0.00071 20.4 4.6 29 37-65 4-32 (50)
470 smart00745 MIT Microtubule Int 57.9 52 0.0011 21.7 6.1 11 50-60 22-32 (77)
471 PF09797 NatB_MDM20: N-acetylt 57.6 35 0.00076 30.3 6.5 46 15-60 196-241 (365)
472 COG5187 RPN7 26S proteasome re 56.9 1.3E+02 0.0029 26.2 10.3 67 36-102 115-187 (412)
473 PF01535 PPR: PPR repeat; Int 56.8 23 0.0005 18.2 3.4 21 42-62 6-26 (31)
474 KOG4459 Membrane-associated pr 56.8 72 0.0016 29.3 8.0 117 4-121 33-184 (471)
475 smart00671 SEL1 Sel1-like repe 56.4 23 0.00049 19.1 3.4 13 85-97 20-32 (36)
476 PF07219 HemY_N: HemY protein 56.2 65 0.0014 23.1 6.6 28 72-99 61-88 (108)
477 KOG0889 Histone acetyltransfer 55.6 2E+02 0.0044 33.5 12.3 66 36-101 2812-2885(3550)
478 PF09477 Type_III_YscG: Bacter 55.1 80 0.0017 23.0 8.2 77 37-118 7-83 (116)
479 cd02679 MIT_spastin MIT: domai 55.0 24 0.00052 24.1 3.8 18 16-33 3-20 (79)
480 KOG2581 26S proteasome regulat 54.5 1.7E+02 0.0037 26.7 9.9 57 12-68 219-279 (493)
481 COG1849 Uncharacterized protei 54.4 21 0.00045 24.9 3.4 27 1-27 40-66 (90)
482 PF09797 NatB_MDM20: N-acetylt 54.3 1.2E+02 0.0026 26.9 9.3 45 50-94 197-241 (365)
483 cd02656 MIT MIT: domain contai 54.1 61 0.0013 21.4 6.1 10 50-59 20-29 (75)
484 KOG2758 Translation initiation 53.6 1.3E+02 0.0028 26.6 8.8 67 32-98 125-195 (432)
485 KOG3616 Selective LIM binding 53.6 33 0.00071 33.7 5.6 44 48-93 803-847 (1636)
486 PF13041 PPR_2: PPR repeat fam 52.9 47 0.001 19.7 5.4 39 70-108 3-43 (50)
487 PF04190 DUF410: Protein of un 52.5 1.4E+02 0.0031 25.2 11.2 90 5-94 13-114 (260)
488 COG5107 RNA14 Pre-mRNA 3'-end 51.2 2.1E+02 0.0045 26.7 11.0 91 12-102 442-534 (660)
489 cd02681 MIT_calpain7_1 MIT: do 51.0 39 0.00084 22.8 4.3 20 45-64 15-34 (76)
490 KOG2114 Vacuolar assembly/sort 50.9 89 0.0019 31.0 8.1 54 10-64 342-396 (933)
491 PF04348 LppC: LppC putative l 50.7 5.2 0.00011 37.7 0.0 97 5-101 27-129 (536)
492 PF14689 SPOB_a: Sensor_kinase 50.5 42 0.0009 21.5 4.3 42 22-63 9-50 (62)
493 COG5536 BET4 Protein prenyltra 50.1 60 0.0013 27.9 6.2 99 19-117 91-197 (328)
494 KOG3616 Selective LIM binding 50.0 75 0.0016 31.3 7.4 25 72-96 767-791 (1636)
495 COG5107 RNA14 Pre-mRNA 3'-end 49.8 1.8E+02 0.0039 27.1 9.4 78 24-101 30-107 (660)
496 PF08969 USP8_dimer: USP8 dime 49.5 35 0.00076 24.8 4.3 30 2-31 38-67 (115)
497 cd02683 MIT_1 MIT: domain cont 49.0 80 0.0017 21.2 6.5 9 50-58 20-28 (77)
498 COG5187 RPN7 26S proteasome re 48.8 1.8E+02 0.004 25.3 11.9 99 2-100 115-222 (412)
499 TIGR00985 3a0801s04tom mitocho 48.2 43 0.00094 25.8 4.7 27 41-67 95-122 (148)
500 KOG1464 COP9 signalosome, subu 48.0 69 0.0015 27.6 6.2 52 13-64 38-93 (440)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=4.6e-42 Score=302.84 Aligned_cols=236 Identities=66% Similarity=0.966 Sum_probs=200.0
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
|+..+..+|..++..|+|.+|+.+|++||+++|+++.+++++|.+|+.+|++++|+.++++++.++|.+..+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV 160 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (262)
+.+|+|++|+.+|++++.++|++..+..|+..|..++.......... .....+. +....+.+..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~------~~~~~~~--------~~~~~~~~~~-- 144 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQP------VPSDLPS--------SVTAPPVEEA-- 144 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcccccc------ccccccc--------cccccccccc--
Confidence 99999999999999999999999999999999999997653321110 0000000 0000000000
Q ss_pred ccccccCCCCCCcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---
Q 024778 161 SNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--- 234 (262)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--- 234 (262)
...+...+..+++|||||||+++|+|+||+||+++++|.|+|++++|+|+|++++|..|.++++||++|+| +|
T Consensus 145 -~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~ 223 (356)
T PLN03088 145 -DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL 223 (356)
T ss_pred -ccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEe
Confidence 01112234456899999999999999999999999999999999999999999989999999999999999 33
Q ss_pred -----EEEeecCCCCCCCccCCCC
Q 024778 235 -----ILLFLKGLIHHPFLDHQDP 253 (262)
Q Consensus 235 -----i~l~K~~~~~W~~l~~~~~ 253 (262)
|+|+|+++++|++|+.++.
T Consensus 224 ~~Kiei~l~K~~~~~W~~L~~~~~ 247 (356)
T PLN03088 224 STKIEIRLAKAEPITWASLEYGKG 247 (356)
T ss_pred cceEEEEEecCCCCCccccccCCc
Confidence 9999999999999997754
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=162.43 Aligned_cols=120 Identities=31% Similarity=0.507 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|+.++.+|+.+++.++|.+|+..|++||.++|+|+.+|++||.+|.++|+|+.|+++++.||.+||.+.++|.|+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.+|+|.+|++.|+++++++|++..++..|..+..++++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999988887554
No 3
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.86 E-value=9.7e-22 Score=138.67 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=71.5
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCC
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGL 242 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~ 242 (262)
+||||||++++|+|+||+||++++++.|+|++++|+|++.+++|+.|.++++||++|+| ++ |+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 58999999999999999999999999999999999999888888899999999999999 33 99999999
Q ss_pred CCCCCcc
Q 024778 243 IHHPFLD 249 (262)
Q Consensus 243 ~~W~~l~ 249 (262)
++|+.||
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999996
No 4
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.85 E-value=1e-21 Score=150.29 Aligned_cols=79 Identities=33% Similarity=0.624 Sum_probs=75.3
Q ss_pred CcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeec
Q 024778 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLK 240 (262)
Q Consensus 172 ~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~ 240 (262)
+++|||||||.+.|+|+||+|||++++|.|+|+++.|++.+.+++|+.|.+.+.|||+|+| +| |+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 5799999999999999999999999999999999999999999999999999999999999 33 999999
Q ss_pred CCCCCCCccC
Q 024778 241 GLIHHPFLDH 250 (262)
Q Consensus 241 ~~~~W~~l~~ 250 (262)
+.++|..|+.
T Consensus 82 ~~irW~~Le~ 91 (196)
T KOG1309|consen 82 EIIRWESLEK 91 (196)
T ss_pred cchhhhhhhc
Confidence 9999999993
No 5
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.79 E-value=3.1e-19 Score=125.23 Aligned_cols=73 Identities=26% Similarity=0.508 Sum_probs=68.8
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCCCCC
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGLIHH 245 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~~~W 245 (262)
||||++++|+|+|++||++++++.|+|++++|+|++..++|..|.++++||++|+| +| |+|+|++++.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999988778889999999999999 33 99999998999
Q ss_pred CCcc
Q 024778 246 PFLD 249 (262)
Q Consensus 246 ~~l~ 249 (262)
+.||
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9996
No 6
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.79 E-value=3.7e-19 Score=125.26 Aligned_cols=73 Identities=27% Similarity=0.343 Sum_probs=66.4
Q ss_pred ccccCCCCeEEEEEEec--CCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--ce----------EEEeecC
Q 024778 176 HEFYQKPEEVVVTVFAK--GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--AY----------ILLFLKG 241 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~~----------i~l~K~~ 241 (262)
||||||+++|+|+||+| +.+++++.+++++++|+|+|+++ ++.|.++++|||+|+| ++ |+|+|++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPCEVRISTETGKIELVLKKKE 79 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCcEEEEcccCceEEEEEEcCC
Confidence 79999999999999988 56788888999999999999988 8889999999999999 22 9999999
Q ss_pred CCCCCCcc
Q 024778 242 LIHHPFLD 249 (262)
Q Consensus 242 ~~~W~~l~ 249 (262)
+++|++|+
T Consensus 80 ~~~W~~Lg 87 (87)
T cd06490 80 PEKWTSLG 87 (87)
T ss_pred CCccccCc
Confidence 99999985
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.6e-17 Score=143.75 Aligned_cols=116 Identities=33% Similarity=0.537 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+......|+.+|..|||..|+..|++||+.+|+++.+|.|||.||.+++++..|+.++..+++++|.+..+|+|.|.+++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.+.+|+.|++.|+.+++++|++.++..++.+|...+
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998876
No 8
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=6.2e-16 Score=119.61 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..++..|+|++|+.+|.+++..+|.+..+++++|.++..+|++++|+..|++++.++|++..+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
|++++|+..|++++.+.|+++.....++.+...+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877766654
No 9
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.70 E-value=7.8e-17 Score=113.04 Aligned_cols=73 Identities=37% Similarity=0.555 Sum_probs=67.6
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCCCCC
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGLIHH 245 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~~~W 245 (262)
||||++++|+|+|+++|+.++++.|+|++++|.|++...++..|.+.++||++|+| +| |+|+|++++.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999877656789999999999999 33 99999999999
Q ss_pred CCcc
Q 024778 246 PFLD 249 (262)
Q Consensus 246 ~~l~ 249 (262)
+.|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9986
No 10
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=130.55 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=156.4
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHcCCC------CHHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPS------MSKA 72 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~l~p~------~~~a 72 (262)
+..++..++.-.|+..|...+...|.|..++...+.|+.++ -....|++++..|+.+... ...+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 34567788888999999999999999865554444444433 3467899999999877542 3468
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q 024778 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLET-GPTNVVSTNNVQPATNISST 151 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (262)
.++++.+++.+.+|+.|.-+|.+|..+.- +..+..|-.+++.++....+.+...+.+. .++ ..+....+.. .
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~-~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~-vEs~e~~GD~-----~ 154 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLYV-DDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKP-VESIENRGDN-----N 154 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHhHhhHhhccccCCCCCCc-hhhhhccCcc-----c
Confidence 99999999999999999999999999844 44577788888877765554443333211 110 0000000000 0
Q ss_pred cccccccccccccccCCCCCCcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCC-eeeecccccccc
Q 024778 152 EDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE-AYHFQPRLFGKV 230 (262)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~L~~~i 230 (262)
.+.+.-+|-...+..+-.+..+++|+|-||..++.|.||.+-+..|+|.+-++.+.|+|++.++.++ .+.+++.||++|
T Consensus 155 ~~~S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev 234 (368)
T COG5091 155 SSHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEV 234 (368)
T ss_pred cccCCCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhc
Confidence 0011111111111111222234444444555555555556777799999999999999999888754 566677999999
Q ss_pred cc---ce--------EEEeecCCCCCCCccCCC
Q 024778 231 YM---AY--------ILLFLKGLIHHPFLDHQD 252 (262)
Q Consensus 231 ~~---~~--------i~l~K~~~~~W~~l~~~~ 252 (262)
+| ++ |+|+|.+..+|..|++..
T Consensus 235 ~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~p 267 (368)
T COG5091 235 YPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRP 267 (368)
T ss_pred CcchhhhhhcchhheehhhhhhhhhhcccccCc
Confidence 99 22 889999999999998753
No 11
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.8e-15 Score=129.72 Aligned_cols=122 Identities=24% Similarity=0.397 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
|....+.|+.+|+.|+|..|+..|.+|+..-..+ ..++.|++.||+++++|..|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999864322 4678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|++.+++||+|.++..+|+|+.|+..|+++++++|+|..+...+..|..++++....
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876443
No 12
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.65 E-value=5.7e-16 Score=110.57 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=68.2
Q ss_pred cccccCCCCeEEEEEEecCCCC---cceEEEEeeeEEEEEEecCCCCeeeeccc-ccccccc---ce--------EEEee
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKVYM---AY--------ILLFL 239 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-L~~~i~~---~~--------i~l~K 239 (262)
+|+|||+++.|+|+|+++++.+ +++.|+|++++|+|.+...+|.+|.+.+. ||++|+| +| |+|.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 5999999999999999999876 99999999999999987767889999995 9999999 33 99999
Q ss_pred cCCCCCCCcc
Q 024778 240 KGLIHHPFLD 249 (262)
Q Consensus 240 ~~~~~W~~l~ 249 (262)
+++..|++|.
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9999999983
No 13
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.5e-15 Score=133.40 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=111.4
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
|+..+..+|+.+|..|||+.|+.+|++||.++|.|..+|.+|+.||..+|+|++|+.+..+.+++.|..+++|.|+|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
+.+|+|++|+..|..+++++|+|..+...+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999888877
No 14
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=114.97 Aligned_cols=122 Identities=33% Similarity=0.470 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (262)
+..+...|+.+|..|+|.+|...|..||...|.. ..+|.+||.|+++++.++.|+.++.++|+++|.+..|+.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4568899999999999999999999999999875 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|.+|..+..|++|+..|.+.++++|....++..+.++-..+......
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999988888888776666655444
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.61 E-value=4e-14 Score=107.80 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|++++|+.+|.+++..+|.+..++.++|.++..+|++++|+..+++++.++|.+...++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+|++++|+..|+++++++|++..+.....++...+
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999998887777776655
No 16
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.61 E-value=4.3e-14 Score=108.75 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.++..|..++..|++++|...|.-...++|.++..|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+|+.+.|..+|+.++.....+++......++...+.
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 999999999999999987555555444444444443
No 17
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.60 E-value=4.8e-15 Score=125.52 Aligned_cols=113 Identities=27% Similarity=0.364 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+.++|+.||++|.|++||.||.+++..+|.|+..+.+||.+|++++.|..|..+|..|+.++....++|-|+|.+-+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
+|...+|...++.++++.|++.+++..+..+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999888877776644
No 18
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.60 E-value=4.5e-15 Score=109.05 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=68.1
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC-CCCeeeecccccccccc---ce--------EEEeecC-
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKVYM---AY--------ILLFLKG- 241 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~L~~~i~~---~~--------i~l~K~~- 241 (262)
.++||||.+.|+|+|+++|+ +++.|+|++++|+|++... ++..|.+.++||++|+| +| |+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 48999999999999999998 8899999999999998643 57779999999999999 33 9999999
Q ss_pred CCCCCCccCCC
Q 024778 242 LIHHPFLDHQD 252 (262)
Q Consensus 242 ~~~W~~l~~~~ 252 (262)
++.|+.|...+
T Consensus 80 ~~~W~~L~~~~ 90 (108)
T cd06465 80 GEYWPRLTKEK 90 (108)
T ss_pred CCCCcccccCC
Confidence 78999998754
No 19
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=128.28 Aligned_cols=134 Identities=43% Similarity=0.599 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
||..+..+|+.++..++|+.|+.+|.+||+++|+++.++.+|+.++++.++|..|+.|+.+|++++|...++|+|+|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPT 134 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 134 (262)
..++++.+|...|+....+.|+++.+.+.+..|......+.-...+.++.+.+.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~ 136 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKK 136 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCc
Confidence 999999999999999999999999999999999999987655544444443333
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.55 E-value=2.2e-13 Score=117.72 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++.+|..+...|++.+|+..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
..|++++|+..|++++.++|+++....|
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999753333
No 21
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.54 E-value=2.3e-14 Score=99.04 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=61.5
Q ss_pred ccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCCCCCC
Q 024778 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGLIHHP 246 (262)
Q Consensus 178 ~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~~~W~ 246 (262)
|+|+++.|+|+|+++|+.++++.|+|+++.|.|+. ..|.++++||++|+| ++ |+|.|++++.|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999999888763 579999999999999 22 999999999999
Q ss_pred Ccc
Q 024778 247 FLD 249 (262)
Q Consensus 247 ~l~ 249 (262)
.||
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 996
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.2e-13 Score=121.53 Aligned_cols=118 Identities=24% Similarity=0.404 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|.++..+|+.+|+.|+|++||.+|++||.+.|+.+.+|.||+.||..+|+|++.++++.++++++|+..++++|++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAP-GDSRFTNLIKECEERIAE 119 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p-~~~~~~~~l~~~~~~l~~ 119 (262)
.+|++.+|+.......-+.. .+......+.++..+++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~ 233 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM 233 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 99999999988875444332 344455555555555443
No 23
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.52 E-value=2.3e-14 Score=115.54 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=75.2
Q ss_pred CCcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec-CCCCeeeecccccccccc--ce---------EEEe
Q 024778 171 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKVYM--AY---------ILLF 238 (262)
Q Consensus 171 ~~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~L~~~i~~--~~---------i~l~ 238 (262)
..+.||||+||+..|+|+||.||..++...|+.....|+|+|.. .++..|.++++|+|.|++ ++ |+|+
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 34789999999999999999999999999999999999999887 456789999999999999 32 9999
Q ss_pred ecCCCCCCCccCCCC
Q 024778 239 LKGLIHHPFLDHQDP 253 (262)
Q Consensus 239 K~~~~~W~~l~~~~~ 253 (262)
|++++.|.+|+..+.
T Consensus 292 k~ep~sWa~Le~p~~ 306 (320)
T KOG1667|consen 292 KAEPGSWARLEFPPE 306 (320)
T ss_pred ccCCCCcccccCCHH
Confidence 999999999998754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.51 E-value=8.3e-14 Score=97.23 Aligned_cols=72 Identities=32% Similarity=0.480 Sum_probs=66.2
Q ss_pred ccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCC-CCC
Q 024778 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGL-IHH 245 (262)
Q Consensus 178 ~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~-~~W 245 (262)
|+|++++|+|+|+++|+.++++.|+|++++|+|.+...++..|.+.++|+++|+| ++ |+|.|+.+ ..|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876557889999999999999 22 99999998 799
Q ss_pred CCcc
Q 024778 246 PFLD 249 (262)
Q Consensus 246 ~~l~ 249 (262)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9984
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=6.8e-13 Score=107.99 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
++.|...|..+...|++++|+..|.++++++|+++.++..+|.++ ...|+ +.+|...+++++.++|++..+++.+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 356889999999999999999999999999999999999999985 67777 599999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (262)
+++.+|+|++|+.+|+++++++|.+..-...+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999998765444444
No 26
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.49 E-value=1.5e-13 Score=99.87 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecCC
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKGL 242 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~ 242 (262)
..++|||+.+.|.|+|++++ .++++|+|++++|+++....+|..|.++|+||++|+| ++ |+|+|++.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCC
Confidence 35899999999999999998 4899999999999998754467889999999999999 33 89999986
Q ss_pred C-CCCCccCCC
Q 024778 243 I-HHPFLDHQD 252 (262)
Q Consensus 243 ~-~W~~l~~~~ 252 (262)
+ .|+.|..+.
T Consensus 80 ~~~WprL~k~~ 90 (106)
T cd00237 80 GVAWPRLTKEK 90 (106)
T ss_pred CCCCchhhcCC
Confidence 4 899998764
No 27
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.8e-13 Score=117.21 Aligned_cols=116 Identities=28% Similarity=0.511 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
..+...|+.+|+.|+|..|.++|+++|.++|++ +.+|.+||.++.++|+..+|+.++..++.+++..+++++++|.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 356889999999999999999999999999987 6889999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
|+..+++|++|.++|++|.++.-+ ...++.+.++...|+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence 999999999999999999998876 6677777777776663
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.46 E-value=1.9e-13 Score=94.40 Aligned_cols=58 Identities=36% Similarity=0.566 Sum_probs=52.9
Q ss_pred cccccCCCCeEEEEEEecCCC--CcceEEEEeeeEEEEEEecCCCCeeeecccccccccc
Q 024778 175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM 232 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 232 (262)
+|+|+|+.+.|+|+|.+++.. ++++.|+|++++|.|++...++..|.++++||++|+|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~ 61 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDP 61 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BEC
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcc
Confidence 799999999999999998875 9999999999999999987777999999999999999
No 29
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.45 E-value=3.4e-13 Score=94.63 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=60.6
Q ss_pred ccccCCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---------EEEeecCC
Q 024778 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY---------ILLFLKGL 242 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~-k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~---------i~l~K~~~ 242 (262)
|+||||.+.|+|+|++ +|+++++++|+|++++|.|.+. +....+..+||+.|+| +| |+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~---~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK---DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC---CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 7899999999999999 6999999999999999999863 3334467799999999 22 99999997
Q ss_pred C-CCCCc
Q 024778 243 I-HHPFL 248 (262)
Q Consensus 243 ~-~W~~l 248 (262)
+ .|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 6 99987
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=2.8e-13 Score=122.33 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.+|++.|+.+-..+.|+.|+.+|.+|+...|+++.++.++|.+|+.+|..+.|+..|++++.+.|..+.+|.++|.++..
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 46777788877777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.|+..+|.++|.+++.+.|+.++....|+.++.+.+...
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 777777777777777777777777777777666665443
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=2.3e-12 Score=122.18 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..|..++..|+|++|+..|.+++..+|+++.+++.+|.+++.+|++++|+.+|++++.++|++..+++.+|.+++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 34555555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
|++++|+..|++++...|+++.+...++.+...+++.
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 6666666666666666666655555555555544443
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=2.1e-12 Score=122.42 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.++++++.++|++..+++.+|.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+|++++|+.+|++++.++|++......++.+..++++...
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999998888777777766655443
No 33
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.44 E-value=4.9e-12 Score=93.62 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (262)
++.++..|..++..|+|++|+..|.+++..+|++ ..+++.+|.+++..|++++|+..++.++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998875 578999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
+|.++..+|++++|...|.+++...|++.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876544
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.44 E-value=1e-12 Score=118.79 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|....+.|..+-.+|++++|+.+|++||++.|+.++++.++|..|-.+|+...|+++|.+|+.++|...+++.++|.+|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 34566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..|+..+|+..|+.++++.|+.+++.-.+..|
T Consensus 468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred ccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999999999999998877666554
No 35
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.40 E-value=1.2e-11 Score=85.98 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..|..++..|++.+|+..|.++++..|.+..++..+|.++...+++++|+..+..++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCC
Q 024778 84 EEYETAKVALEKGASLAPG 102 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~ 102 (262)
|++++|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 36
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.39 E-value=1.3e-12 Score=91.74 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=61.4
Q ss_pred ccccCCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--c-e---------EEEeecCC
Q 024778 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--A-Y---------ILLFLKGL 242 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~-k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~-~---------i~l~K~~~ 242 (262)
|.|+|+++.|+|+|.+ +++.++++.|+|++++|+|++. |..+.+...||++|+| + + |+|.|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~---~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK---GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC---CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 6899999999999976 5788999999999999999974 3467788899999999 2 2 99999998
Q ss_pred -CCCCCc
Q 024778 243 -IHHPFL 248 (262)
Q Consensus 243 -~~W~~l 248 (262)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 599987
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=9.5e-13 Score=119.65 Aligned_cols=121 Identities=17% Similarity=0.268 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.|+..|+++-.+++++.||.+|.+|+.++|+.+.+|..+|.=+..+.+|+.|...|+.|+.++|++..|||.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+++++.|.-+|++|++++|.+..+.-.++..+.+++..+++
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHH
Confidence 99999999999999999999988888888888888776555
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.9e-12 Score=110.01 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=77.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
.||.+.-.++.++|+.+|++||+++|....+|..+|.=|..+++...|+..|++|+.++|.+..|||.+|++|.-++-..
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
=|+-+|++++++.|+|+.++..++.|+.++.+...+
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 666666666666666666666666666666554443
No 39
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.1e-12 Score=103.58 Aligned_cols=99 Identities=29% Similarity=0.485 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
|++.+.+.|+.+|..+.|..|+.+|.+||.++|..+.++.+++.||+++++++.+..+++++++++|+..+++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhcc
Q 024778 81 MKLEEYETAKVALEKGASL 99 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l 99 (262)
.....|.+|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999664
No 40
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.35 E-value=4.2e-12 Score=85.30 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHhhccCC
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~a~~l~p 101 (262)
+..+..+|.+++..|+|++|+..|++++.++|++..+++++|.++..+| ++.+|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444455555555555555555555555555555555555555555554 45555555555554444
No 41
>PRK15331 chaperone protein SicA; Provisional
Probab=99.35 E-value=3.8e-11 Score=92.95 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.++..|..+|..|+|++|...|.-....++.+++.++.+|.|+..+++|+.|+..|..+..++++++...|+.|.|+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+|+...|+.+|+.++. .|.+..++.........+.
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 9999999999999998 5666666655554444444
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.7e-11 Score=99.07 Aligned_cols=121 Identities=16% Similarity=0.031 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+....++|..|+..||+..|..-+++||+.+|++..+|..||..|.++|+.+.|-+.|++|+.++|++..++.+.|--++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhhc
Q 024778 82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
.+|+|++|...|++++.. .+.-.....++..|..+.++...
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchh
Confidence 999999999999998862 34444566777777776665433
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=8.2e-12 Score=96.52 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 21 Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
-..+|+++++++|++ +..+|.++...|++++|+..|+.++.++|.+..+|+.+|.++..+|++++|+.+|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 457899999999885 55789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Q 024778 101 PGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 101 p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|+++.+...++.+...+++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998888876655
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=2e-11 Score=114.23 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..+...|++++|+..|++|++++|+++.+++.+|.++..+|++++|+..++++++++|.+..+++.++.+++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 34445555556666666666666666666666666666666666666666666666666666666555544455555556
Q ss_pred hcHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~l~~ 119 (262)
|++++|+..+++++... |+++.+...++.+...+++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 66666666666655543 4455555555555444443
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=6.5e-12 Score=84.34 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p 67 (262)
|..+...|..++..|+|++|+.+|+++++.+|+++.+++++|.||..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999999999999999999999999 79999999999999988
No 46
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.33 E-value=8.1e-12 Score=96.00 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=69.1
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecc-cccccccc--ce---------EEEeecCCC
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKVYM--AY---------ILLFLKGLI 243 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~--~~---------i~l~K~~~~ 243 (262)
|.|.|++..|.++|.+.||..|+|.|+|.++||.+.|+...|++|.+.+ .|+++|.| ++ |.|+|.+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcc
Confidence 9999999999999999999999999999999999999988999999999 79999999 22 999899999
Q ss_pred CCCCc
Q 024778 244 HHPFL 248 (262)
Q Consensus 244 ~W~~l 248 (262)
+|..|
T Consensus 157 rwd~L 161 (224)
T KOG3260|consen 157 RWDYL 161 (224)
T ss_pred cchHH
Confidence 99987
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.6e-11 Score=105.60 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..|--.|..++.+++...|++.|+.|++++|.|..+|+.+|++|..++...=|+-+|++|+.+.|.+...|..+|.||..
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+++.++|+.||.+++..+..+..+...+++++++++...++
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999988888999999999999876554
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.32 E-value=5.5e-11 Score=94.64 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..++..|..+...|++++|+.+|.+++...++. ..++.++|.++..+|++++|+..+.+++.++|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567899999999999999999999999987653 5789999999999999999999999999999999999999999
Q ss_pred HHHHhhc--------------HHHHHHHHHHhhccCCCCH-HHHHHHH
Q 024778 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (262)
Q Consensus 79 ~~~~lg~--------------~~~A~~~~~~a~~l~p~~~-~~~~~l~ 111 (262)
++..+|+ +.+|..++++++.++|++- ++..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999887 6888999999999999763 3444443
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=2.9e-11 Score=98.40 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=101.5
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhhc--HHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~-~~lg~--~~~A~~ 91 (262)
.++.++++..|.+++..+|++..+|..+|.+|..+|++++|+..|++++.++|++...++.+|.++ +..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999986 67787 599999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 92 ALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
.++++++++|++..+...++.+....++...++
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999998888887766553
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.1e-11 Score=112.72 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
++|+..|..|++.++++.|.-.|.+|+.++|.+..+.+..|..+.++|+.++|+..+++|+.++|.++.+.|.+|.+++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
+++|++|+..|+...++.|++..+...+++++.+++....+.
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 999999999999999999999999999999999999876664
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=3.7e-11 Score=112.51 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=90.1
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 95 (262)
+++.+|+..+++|+.++|+++.++..+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHHHHH
Q 024778 96 GASLAPGDSRFTNLIK 111 (262)
Q Consensus 96 a~~l~p~~~~~~~~l~ 111 (262)
+++++|.+......+.
T Consensus 398 Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 398 CLKLDPTRAAAGITKL 413 (553)
T ss_pred HHhcCCCChhhHHHHH
Confidence 9999999876544433
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.9e-11 Score=107.92 Aligned_cols=118 Identities=23% Similarity=0.264 Sum_probs=92.6
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
||..+...|-.+|-.|++..|.+.|+++|.++|.+..+|+.||.+|....+-++-..+|.+|..++|.++..|+.+|.++
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 56777788888888888888888888888888888777888888888888888888888888888888888888888888
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+.+++|++|+..|++++.++|++.-....+..+..+..
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 88888888888888888888877655554444444443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=8.5e-11 Score=96.08 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+...|..++..|++++|+..|.+++..+|++..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45677888888899999999999999998888888888889999999999999999999999888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~l~~ 119 (262)
..|++++|...|++++... +........++.+....++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 8888888888888888753 2333444445555444443
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=6e-11 Score=116.63 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
+|++++|+.+|++++.++|++..+......+
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 9999999999999999999886665444433
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=4.9e-11 Score=113.23 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|......|.+++|..++..++...|++..++.+++.++.+++++++|+..+++++..+|++..+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35677888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+|+|++|+++|++++..+|+++.++..++.+.+.+++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999988888888777777776665543
No 56
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=1.1e-11 Score=86.70 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=73.4
Q ss_pred HhhCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHH
Q 024778 14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~ 91 (262)
..|+|+.|+.+|++++...|. +..+++.+|.||+++|+|++|+..+++ ...++.+...++.+|.|++.+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHh
Q 024778 92 ALEKG 96 (262)
Q Consensus 92 ~~~~a 96 (262)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1.9e-10 Score=99.49 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------ 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------------ 69 (262)
+..+...|..+...|+|++|+..|+++++++|++..++.++|.+++..|++++|+.++++++.++|++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 45788999999999999999999999999999999999999999999999999999999888877641
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHHHhhcHHHHHH
Q 024778 70 ----------------------------------------------------------SKAYWRKATACMKLEEYETAKV 91 (262)
Q Consensus 70 ----------------------------------------------------------~~a~~~~g~~~~~lg~~~~A~~ 91 (262)
..+|+.+|.++..+|++++|+.
T Consensus 178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1357778888888899999999
Q ss_pred HHHHhhccCC-CCHHHHHHHHHHHH
Q 024778 92 ALEKGASLAP-GDSRFTNLIKECEE 115 (262)
Q Consensus 92 ~~~~a~~l~p-~~~~~~~~l~~~~~ 115 (262)
+|++++.++| +..+.+..+-.+..
T Consensus 258 ~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 258 LFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999886 44554444444333
No 58
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.9e-11 Score=100.89 Aligned_cols=102 Identities=26% Similarity=0.431 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
|+.+.+.|+.+|+.++|..|+.+|+++|+..-. ++.+|.|||.|.+.+|+|..|+.++.+++.++|.+.++++|-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 678899999999999999999999999998533 3789999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 78 TACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.|++.+.++.+|...++..+..+-..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999888888887776654433
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.25 E-value=2.4e-10 Score=95.25 Aligned_cols=106 Identities=25% Similarity=0.245 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---HHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~ 75 (262)
+..++..|..++..|+|++|+..|.+++..+|+++ .+++.+|.+|+.+|++++|+..++++++.+|++.. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 46789999999999999999999999999999876 57899999999999999999999999999998765 7999
Q ss_pred HHHHHHHh--------hcHHHHHHHHHHhhccCCCCHHHH
Q 024778 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 76 ~g~~~~~l--------g~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+|.+++.. |++++|+..|++++..+|++....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 99999987 899999999999999999986554
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=2.6e-10 Score=93.18 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~ 80 (262)
..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3567788889999999999999999999999999999999999999999999999999998754 45567888899999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
...|++++|...|.+++..+|++......+..+....++...
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999887777777777666655433
No 61
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.25 E-value=9.3e-11 Score=89.12 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 23 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
+.|.+++..+|++..+.+.+|.+++..|++++|+..++.++.++|.+..+++++|.++..+|++++|...|++++.++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcc
Q 024778 103 DSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+......++.+....++...+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHH
Confidence 999999999988888766554
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=2e-10 Score=94.52 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
+..+|...+..|+|..|+..+.++....|++..+|..+|.+|.++|++++|...|.+++++.|..+.+.-++|..+...|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
+++.|...+..+....+.+..+...+..+....+....+.
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 9999999999999999989999999999988888776653
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.1e-11 Score=109.50 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
...-+|..|+-.|+|++|+.||+.||...|+|..+|..+|..+---.+.++|+..|++|+++.|....++|++|++|.++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 45667899999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCC
Q 024778 84 EEYETAKVALEKGASLAPG 102 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~ 102 (262)
|.|.+|..+|-.++.+.+.
T Consensus 512 G~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhHHHHHHHHHHHHHhhhc
Confidence 9999999999999998765
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=1.5e-10 Score=113.81 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=104.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
+......|++++|+..|.+++..+|+ +.++.++|.++.++|++++|+..|++++.++|++..+++.+|.++..+|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|+..|+++++++|+++.+...++.+...+++...+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999888877665433
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=4.2e-10 Score=89.13 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..++..|..+...|+|++|+..|.+++.+.++. +.++.++|.+|..+|++++|+..+++++.++|....+++.+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4567889999999999999999999999987663 4689999999999999999999999999999999999999999
Q ss_pred HHH-------HhhcHH-------HHHHHHHHhhccCCCCH-HHHHHHH
Q 024778 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS-RFTNLIK 111 (262)
Q Consensus 79 ~~~-------~lg~~~-------~A~~~~~~a~~l~p~~~-~~~~~l~ 111 (262)
++. .+|+++ +|...|++++..+|.+. ....|+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 999 666665 66666677788888543 3434443
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=8.7e-11 Score=99.95 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+..++.|..++..|++..|+..|..|+..+|++..+++.||.+|+.+|+-..|+.++++++++.|+...|...+|.++..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCH---HHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDS---RFTNLIKECE 114 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~ 114 (262)
+|+++.|.+.|...+..+|++. ++...+..+.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 9999999999999999999654 3444444433
No 67
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-10 Score=93.95 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
.+.+.||.+|+.|+|.+|...|..|+.. .|.+ ..++.|.++|++..|+|.++++++...+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999863 3443 356889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHHHHhh
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEET 121 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~l~~~~ 121 (262)
+|++.+|||++|.++....+-++|.+.|.++++++|.-.. ..+.+..+..++....
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~ 316 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQ 316 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999997543 4455666666665543
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.23 E-value=4.3e-10 Score=95.21 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=97.1
Q ss_pred hHHHHHHHHH-HHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 024778 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (262)
Q Consensus 3 ~~l~~~g~~~-~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (262)
...+..|..+ +..|+|++|+..|...+..+|++ +.+++.+|.+|+..|++++|+..|.+++...|++ ..+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567777776 66799999999999999999998 5799999999999999999999999999998874 689999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHH
Q 024778 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (262)
+|.++..+|++++|...|+++++..|+...+.....
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999999999999999876544433
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=7.1e-11 Score=101.21 Aligned_cols=122 Identities=21% Similarity=0.193 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+.+.|++++|+.+|.++|+.+|++..++..++.++...|+++++...+.......|.++..+..+|.++..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 35678899999999999999999999999999999999999999999999998888888888878888888999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
+|++++|+..|++++..+|+|+.+...++.+....+....+.
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999888776653
No 70
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=3.5e-10 Score=107.89 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~----Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
.+...|..++..|++++ |+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|++..+++.+|.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777664 66777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+..+|++++|+..|++++..+|++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 7777777777777777777766654433
No 71
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=3.4e-10 Score=107.97 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..|..++..|++++|+..|.+++..+|+++.++.++|.+|..+|++++ |+..|++++.++|++..++..+|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.|++++|+..|++++.++|+++.+...+..+...+++..
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999988888877766655443
No 72
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.19 E-value=7.5e-11 Score=83.63 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=61.0
Q ss_pred ccccccCCCCeEEEEE-EecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--c-e---------EEEeec
Q 024778 174 YRHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--A-Y---------ILLFLK 240 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i-~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~-~---------i~l~K~ 240 (262)
-+|.|+||.+.|+|+| +-+|++++++.|+|+.++|.|.+. |.. .+..+||+.|+| + | |.|.|.
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~ 81 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeC
Confidence 3699999999999999 678999999999999999999972 444 666799999999 2 2 999999
Q ss_pred CCC---CCCCc
Q 024778 241 GLI---HHPFL 248 (262)
Q Consensus 241 ~~~---~W~~l 248 (262)
+.+ .|++|
T Consensus 82 ~~~~~~~W~sl 92 (93)
T cd06494 82 NRDAGNCWKSL 92 (93)
T ss_pred CCCCCcccccc
Confidence 755 89886
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=3.5e-10 Score=91.46 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACM 81 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~~ 81 (262)
.+..++..|...|+.+.|-+.|.+||.++|++++.+.|.|..++.+|++++|...|++|+.. .+.....+-++|.|..
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 46677888999999999999999999999999999999999999999999999999999864 3455688999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+.|+++.|..+|+++++++|+++.....+...+..-++.
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 999999999999999999999887666666555544433
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1.1e-10 Score=77.42 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=35.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 41 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.+|..++..|+|++|+..|+.++..+|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 75
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.16 E-value=1.8e-09 Score=81.86 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 75 (262)
+..++..|...+..|+|.+|++.|.......|.. ..+.+.++.+|++.++|.+|+..+++-++++|.+. -++|+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4688999999999999999999999999998876 57889999999999999999999999999999765 68999
Q ss_pred HHHHHHHhhc---------------HHHHHHHHHHhhccCCCCHHHH
Q 024778 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 76 ~g~~~~~lg~---------------~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+|++++.+.. ...|...|+..+...|+...+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999987 8889999999999999876543
No 76
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.1e-09 Score=90.55 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
++.|...|..++..|++..|...|.+|+++.|+++..+..+|.+++... .-.++...+++++.+||.+..+.+.+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999998874 4568899999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.++..|+|.+|...++..+...|.+......+.........
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~ 276 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALA 276 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999877666666655554443
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=1e-09 Score=103.07 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.++.+|+.++..|++++|.+.+.++|+.+|.++.+|+.+|.+|..+|+.+.++...-.|-.++|.+..-|.+++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+|.+..|.-||.+++..+|.+-........+..+++....
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 9999999999999999999987766666666665554433
No 78
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.8e-10 Score=76.40 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 70 (262)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999874
No 79
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.13 E-value=3.8e-09 Score=78.26 Aligned_cols=101 Identities=27% Similarity=0.308 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT 78 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~ 78 (262)
..+-.+|..+...|+.+.|++.|.++|.+.|.++.+|.+|++++...|+.++|+.++.+++++..+. ..+|..+|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3556678888999999999999999999999999999999999999999999999999999997543 468999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
+|..+|+-+.|...|+.+.++....
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999987654
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.12 E-value=1.2e-09 Score=105.97 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+...|++.+|+.+|.+++..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
.|++++|+..|+++++++|++..+...+..+...
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888777666543
No 81
>PLN02789 farnesyltranstransferase
Probab=99.11 E-value=2.5e-09 Score=93.08 Aligned_cols=115 Identities=13% Similarity=0.002 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
..+..+|..+...| ++++++..+++++..+|.+..+|..|+.++.++++. .+++..+.+++.++|++..+|..+|-+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35677788888887 689999999999999999999999999999888874 678899999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+..+|+|++|++++.++++.+|.|..++.....+...+
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999988877666655443
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1.6e-09 Score=90.24 Aligned_cols=121 Identities=15% Similarity=0.064 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCCHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~~~~ 71 (262)
..++..|..++..|++++|+..|+++++..|++.. +++.+|.+++.. |++++|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35688999999999999999999999999998765 789999999986 8899999999999999998753
Q ss_pred H-----------------HHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHHHhhcc
Q 024778 72 A-----------------YWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEETGE 123 (262)
Q Consensus 72 a-----------------~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~~~~ 123 (262)
+ .+.+|..++..|++.+|+..|++++...|+.+ .+...+..+...+++...+
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 3 24678899999999999999999999987654 5677788888877766554
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=7e-09 Score=84.79 Aligned_cols=119 Identities=27% Similarity=0.256 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 75 (262)
++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.++++.|+|..|+..+++.+...|++. .++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4688999999999999999999999999998876 57899999999999999999999999999999764 68999
Q ss_pred HHHHHHHhhc-----------HHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHHHh
Q 024778 76 KATACMKLEE-----------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (262)
Q Consensus 76 ~g~~~~~lg~-----------~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~ 120 (262)
+|.+++.+.. ..+|+..|+..+...|+.+ .+...+..+..++...
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999887653 4589999999999999875 3556667777777654
No 84
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=2.3e-09 Score=95.02 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
..+..+...+..|+++.|...++..++..|+|++++..++.+++..++..+|.+.+++++.++|......+.+|.+|...
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|++.+|+..+...+.-+|+++..+..|+..+..+++..++
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 9999999999999999999999999999999998866544
No 85
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=3.1e-09 Score=88.44 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK 76 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~ 76 (262)
..+++.|..++..|+|..|...|..-++..|++ +.+++-+|.+++.+|+|.+|...|..+++..|+. ++++|.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457899999999999999999999999999987 6889999999999999999999999999998865 5789999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
|.++..+|+.++|...|+.+++..|+.+.+......
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999998876554433
No 86
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.08 E-value=2.5e-09 Score=104.01 Aligned_cols=117 Identities=23% Similarity=0.191 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+..|.+++..+|++..++..+|.+++..|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.|++++|...|++++.++|++......+..+....++
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~ 242 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE 242 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988777666666554443
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=8.6e-09 Score=86.49 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 75 (262)
++.++..|..++..|+|++|+..|.+++...|....+ .+.+|.+|+++++|.+|+..+++.+.++|++. .++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3567899999999999999999999999999998655 48999999999999999999999999998764 68999
Q ss_pred HHHHHHHhhc------------------HHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHHHh
Q 024778 76 KATACMKLEE------------------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (262)
Q Consensus 76 ~g~~~~~lg~------------------~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~ 120 (262)
+|.+++.++. -.+|+..|+..+...|+.. ++...+..+..++.+.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9998766541 3578899999999999874 4556677777777654
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-09 Score=100.26 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHcCCCCHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~~g~~ 79 (262)
+..++..|..+...|.+.+|.+.|..|+.++|++......+|.++...|+-..|.. .+..++++||.++++||.+|.+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999998777777 8899999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
+..+|+.+.|.+||+.|+++.+.+|
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999888776
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=1.8e-09 Score=83.27 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=88.2
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHH
Q 024778 28 AIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (262)
Q Consensus 28 al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~ 106 (262)
...+. ++.-...+.+|..++..|++++|...|+.+..++|.+...|+.+|.++..+|+|.+|+.+|.++..++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 024778 107 TNLIKECEERIAEETGE 123 (262)
Q Consensus 107 ~~~l~~~~~~l~~~~~~ 123 (262)
...++.|.-.+++...+
T Consensus 106 ~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 106 PWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 99999998888766544
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.05 E-value=3.4e-09 Score=107.28 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=74.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH--------
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT-------- 78 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~-------- 78 (262)
..|..++..|++++|+.+|.+++..+|++..+++.+|.+|...|++++|+..|++++.++|.+..++..++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 446666777777777777777777777777777777777777777777777777777777766555443333
Q ss_pred ----------------------------------HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 79 ----------------------------------~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
++...|++++|+..|+++++++|+++.+...+..+....+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3334567777777777777777776665555555444433
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=6.7e-09 Score=98.85 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.+....+..+.+.+.+++|+..+.+++..+|+++.+++.+|.++.++|+|++|+..|++++..+|++..++..+|.++..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGD-SRFTNLIKECEER 116 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~ 116 (262)
+|+.++|..+|++++....+. ..+...+.++...
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD 235 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 999999999999999976543 3334445544433
No 92
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.04 E-value=3.8e-09 Score=102.75 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
+...|..+...|++++|+..|.+++..+|+++.++.++|.++...|+ .+|+..+++++.+.|++...+..+|.+++.+|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 44556666666666666666666666666666666666666666666 56666666666666666666666777777777
Q ss_pred cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
++++|+..|+++++++|.++.+...+..+....++..
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776666666666655555443
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=3.2e-09 Score=107.42 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 69 (262)
.|..++..|++++|+..|+++++.+|+++.++..+|.+|+++|++++|+..|++++.++|++
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 36666667777777777777777777777777777777777777777777777776666643
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.02 E-value=6.9e-09 Score=92.64 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACMKL 83 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~l 83 (262)
+...|..++..|++++|+..|.++++.+|++..+++.+|.+|...|++++|+..+++++..+|.+. .++..++.+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 345666667777777788777777777777777777777777777778888777777777776653 4566777777777
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
|++++|...+++++...|+...+ ..+..+..+.
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~ 295 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQ 295 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHh
Confidence 77777777777777777765433 4444444333
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=96.00 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+.++.++|+..|..||+++|.+.|.+||..+.....+++++|..+..+|++++|+.+|-+.-.+--++.++++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34677889999999999999999999999999889999999999999999999999998887777788999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
.+.+...|++.|.++..+-|+++.+..-|+.++.+-+...++
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 999999999999999999999999888888887776655444
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.00 E-value=2.8e-09 Score=72.13 Aligned_cols=65 Identities=28% Similarity=0.470 Sum_probs=35.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
.+|+..++|++|+..+++++.++|.++..++.+|.+++.+|+|.+|..+|+++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544433
No 97
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=1.8e-09 Score=71.99 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=46.2
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
++..|+|++|+..|.+++..+|++..+++.+|.||++.|++++|...+.+++..+|++...+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566777777777777777777777777777777777777777777777777777776655555543
No 98
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.99 E-value=1.3e-08 Score=90.84 Aligned_cols=119 Identities=10% Similarity=0.009 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~ 79 (262)
..+..|..+...|++++|+..|.++++.+|++..++..+|.++...|++++|+..++.++...+.. ..+++.+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999988754332 3578899999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+...|++++|...|+++++.+|.+..+...+..+....++...
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 159 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQK 159 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHH
Confidence 9999999999999999999988877777766666665555433
No 99
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=1.2e-08 Score=88.99 Aligned_cols=111 Identities=15% Similarity=0.057 Sum_probs=99.4
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcH--HH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--ET 88 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~--~~ 88 (262)
+...+.+++|+..+.++|.++|.+..+|..|+.++..++ ++++++..+++++..+|++..+|+.++.++..+|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 456789999999999999999999999999999999998 689999999999999999999999999999999874 78
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
++.++.++++++|.|-.++...+.+...++....
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999999888777777666654433
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.98 E-value=1.5e-08 Score=98.53 Aligned_cols=108 Identities=17% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIK 111 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (262)
|+|++|...++.+++..|+++.+...-.
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999986654433
No 101
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.5e-09 Score=93.15 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----N---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+.+.|..+|..+.|.+|+.+|..++..-+ . -...+.++|.++.+++.+.+|+..+++++.+.|.++.+|-.+|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 45677778888888888888888884321 1 2345889999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
.+|..+|+++.|+.+|.+++.++|++..+...|..+.+...
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999888888877665543
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.96 E-value=6.6e-09 Score=70.31 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=64.9
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
...++..++|+.|+.++++++..+|+++.++..+|.|+..+|++.+|+.++++++...|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999887665543
No 103
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.94 E-value=3.9e-10 Score=95.90 Aligned_cols=111 Identities=32% Similarity=0.420 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|....-++..++..|+++.||+.|+.+|.++|..+.+|..|+.+++++++...|+++|..++.++|+....|-.+|.+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 55677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.+|+|.+|..+|..+++++-+. ..-.|+..+
T Consensus 194 llg~~e~aa~dl~~a~kld~dE-~~~a~lKeV 224 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDE-ANSATLKEV 224 (377)
T ss_pred HhhchHHHHHHHHHHHhccccH-HHHHHHHHh
Confidence 9999999999999999988653 344555544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=4.9e-09 Score=94.49 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
+++...+|.+|...++|++|+++|+.||...|.+...|.|+|-.+.+-.+.++|+..|.+|+++.|+...++..++-+..
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 45555556566556666666666666666666666666666666666666666666666666666666555555554444
Q ss_pred HHHHhhc
Q 024778 116 RIAEETG 122 (262)
Q Consensus 116 ~l~~~~~ 122 (262)
-++.+.+
T Consensus 510 NlG~ykE 516 (579)
T KOG1125|consen 510 NLGAYKE 516 (579)
T ss_pred hhhhHHH
Confidence 4444433
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.93 E-value=3.9e-08 Score=73.22 Aligned_cols=97 Identities=21% Similarity=0.048 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~ 75 (262)
++.+++.|..+-..|+.++|+.+|.+++...... ..+++.+|.+|..+|++++|+..++.++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578999999999999999999999999975444 578999999999999999999999999999888 7777888
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhc
Q 024778 76 KATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
++.++..+|++++|+..+..++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.93 E-value=2.6e-08 Score=78.04 Aligned_cols=99 Identities=19% Similarity=0.336 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-
Q 024778 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQN----------FTEAVADANRAIELEPSMSKAYWRKATACMKLEE- 85 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~- 85 (262)
-|+.|.+.+......+|.+++++.+-|.+++.+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999988743 5678999999999999999999999999998875
Q ss_pred ----------HHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 86 ----------YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 86 ----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
|+.|..+|+++...+|++...+..|..+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 899999999999999999988888877643
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=6e-08 Score=79.70 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
...|..+-..|.|++|+++|+..|..+|.|...+-..-.+...+|+-.+|++.+..-+...+.+.++|..++.+|...|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 44577777888999999999999988888877666666666666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
|+.|..||+.++-+.|.++.....++.+..-++
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 777777777777777777766665555544443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.9e-08 Score=82.94 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
...+..++..|+-+.+.....+++..+|.+..++...|...+..|+|.+|+..++++..+.|.++++|..+|.+|.++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45677788888888899999998889999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+++|...|.+++++.|+++.+..++.....--++..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 999999999999999999998888877655544443
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=2.4e-08 Score=91.22 Aligned_cols=119 Identities=11% Similarity=0.090 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..+...|..++|...+...+.+|+..|..++.+...|..+..+|+-++|....+.+++.|+....+|.-+|.++..-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
.+|++|+.||+.|+.++|+|..+.+-++.++.+++....
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999888886543
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=2.7e-08 Score=76.82 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK 76 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~ 76 (262)
...+......+..+++..+...+...+..+|+. ..+.+.+|.+++..|++++|+..|+.++...++. ..+.+++
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 456667777777888888888888888888877 5667778888888888888888888888776543 3577888
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
|.++...|+|++|+..++.. .-.+-.+.+...++.+....++...
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888652 2223334455666677666665443
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.89 E-value=7.3e-09 Score=69.04 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.2
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 46 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
++..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.+...++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999998877766654
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.85 E-value=3.2e-08 Score=87.76 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++.+|.+++..|+|++|+..|++++.++|+++.+++.+|.+|+.+|+|++|+.+|++++.++|++..++..++.|..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999888888776
Q ss_pred Hhh
Q 024778 82 KLE 84 (262)
Q Consensus 82 ~lg 84 (262)
.+.
T Consensus 116 kl~ 118 (356)
T PLN03088 116 KIA 118 (356)
T ss_pred HHH
Confidence 663
No 113
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=1.7e-08 Score=86.44 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
......+...++++++...+.++.... +.++.+++.+|.++.+.|+.++|+.++++++.++|++..+...++.++...
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 344566788999999999999977655 678899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|+++++...+.......|+++.++..++.+...+++...+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 9999999999998888888888888888888888766554
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=1.4e-08 Score=90.27 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
..++++|..++..|+|++|+.+|++||.++|++..+ |+++|.||..+|++++|+.++++|+.+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555432 555555555555555555555555554
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=1.3e-07 Score=80.84 Aligned_cols=117 Identities=18% Similarity=0.208 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+..+...++..||+..||++.+..|.+.|=++.++..|+.||...|+...|+.+++.+-.+..++.+.+|..+..++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHH---HHHHHHHHHHHHHHh
Q 024778 84 EEYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (262)
|+.+.++...+.|++++|+... +...+.++.+.+...
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999765 334455555555433
No 116
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=2.1e-08 Score=80.64 Aligned_cols=116 Identities=22% Similarity=0.149 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|.-++++|..|=..|-+.-|.--|+++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..+++||.+--++.++|++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34578888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.-|+|.-|.+.+.+...-+|+||--..|+=..+.++
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~ 180 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL 180 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence 999999999999999999999986556665554444
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1e-07 Score=84.79 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
--.+..++..++..+|++.+.+++.++|+.+.+.+++|.+|++.|++.+|+..+...+..+|+++..|..+|.+|..+|+
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
-.+|...+-....+......+...+.....+.
T Consensus 424 ~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 RAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 88888888888888777666666665555544
No 118
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.80 E-value=8.3e-08 Score=93.08 Aligned_cols=117 Identities=9% Similarity=-0.039 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
...+.++...++.|+|..|+..|.++++.+|.++.+...++.++...|++++|+..+++++.-.+.....+..+|.++..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999853333777777777888888888888873233333444444667888
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
+|+|++|++.|+++++.+|+++.+...+..+....++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 8888888888888888888887766655554444433
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=5.4e-08 Score=77.01 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=94.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMK 82 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~ 82 (262)
+.+.+|-.++|..+...+...++.++.+ ..+++++|.++..+|++++|+..+++++.+.++. ..+++++|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 3456777888999999998877776665 6778999999999999999999999999987653 4589999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+|++++|+.+|++++.++|........+..+...++
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999998887777777766443
No 120
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=8.8e-08 Score=83.59 Aligned_cols=96 Identities=23% Similarity=0.210 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+.+.+.++.+.++|..|+..++++|..+|+|..+++.+|.++..+++|+.|+.+|+++++++|.|-.+...+..+....
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999998888888888877
Q ss_pred hcHHHH-HHHHHHhhcc
Q 024778 84 EEYETA-KVALEKGASL 99 (262)
Q Consensus 84 g~~~~A-~~~~~~a~~l 99 (262)
.++.+. .+.|.+.+..
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 777665 5566655543
No 121
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.79 E-value=1.3e-08 Score=69.47 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=50.9
Q ss_pred ccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC-------CCCeeeecccccccccc
Q 024778 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKVYM 232 (262)
Q Consensus 178 ~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~L~~~i~~ 232 (262)
|+|+++.|+|+|.++|+.++++.|+|.++.|.|++... ++..|.+.+.|+++|+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 62 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDP 62 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCH
Confidence 99999999999999999999999999999999998654 24789999999999999
No 122
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=98.78 E-value=3.3e-08 Score=69.37 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=59.3
Q ss_pred ccccCCCCeEEEEEEec---CCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--ce----------EEEeec
Q 024778 176 HEFYQKPEEVVVTVFAK---GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--AY----------ILLFLK 240 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~~----------i~l~K~ 240 (262)
|.|-||.+.|+|+|-++ |+.+.++.|+|+.++|.|.++ |....+..+||++|++ ++ |+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 68999999999999864 267899999999999999873 5567788899999999 22 999999
Q ss_pred CCC-CCCCc
Q 024778 241 GLI-HHPFL 248 (262)
Q Consensus 241 ~~~-~W~~l 248 (262)
.++ -|+.|
T Consensus 78 ~~~~wW~~l 86 (87)
T cd06492 78 NKMEWWSRL 86 (87)
T ss_pred CCCcccccc
Confidence 764 88876
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.77 E-value=1e-07 Score=84.87 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=66.3
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+|+++.+++++|.+|+.+|+|++|+..|++++.++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999854 999999999999999999999999997
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=1.7e-07 Score=64.60 Aligned_cols=85 Identities=25% Similarity=0.342 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+++.+|.+++..|++++|+..+++++...|.+..+++.+|.++...+++++|+.+|++++...|.+......+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887777777777666
Q ss_pred HHhhc
Q 024778 118 AEETG 122 (262)
Q Consensus 118 ~~~~~ 122 (262)
++...
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 65433
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=2.7e-08 Score=91.97 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+++....|...+..++|+++..+++..++++|-....|+++|.|..+++++..|..+|.+++.++|++..+|.+++.+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34444555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.+++-.+|...+.++++.+-++..++.+...+
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv 596 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLV 596 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence 99999999999999999987665555444333
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=4.5e-07 Score=69.97 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
..+..|..++..|+|++|+..|..++...++. ..+.+.+|.+++..|+|++|+..++. +.-.+-.+.++..+|.++
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 56778999999999999999999999988665 46788999999999999999999966 333344567889999999
Q ss_pred HHhhcHHHHHHHHHHhh
Q 024778 81 MKLEEYETAKVALEKGA 97 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~ 97 (262)
...|++++|+..|++++
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 127
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=7e-08 Score=81.14 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
-.|.+++.+|.+.|.|+.|++.+..||.++|+...+|..+|.+|+.+|+|.+|+..|.++|+++|++....-.+..+-..
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999888788877777
Q ss_pred hhcHH---HHHHHHHHhhcc
Q 024778 83 LEEYE---TAKVALEKGASL 99 (262)
Q Consensus 83 lg~~~---~A~~~~~~a~~l 99 (262)
+++-. .+...++.+..+
T Consensus 196 l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 196 LNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred hcCCCcccccccchhhhhhc
Confidence 77655 444444444433
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.1e-08 Score=85.59 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 69 (262)
+.+++-+|.+++-..+.+.|+..|+++|+++|+. ...+-.+|.-.++.|+|..|...|..+|.++|.+
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 3567788888889999999999999999999886 3456678888889999999999999999999975
Q ss_pred ----HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 70 ----~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
...|.++|.+...+|+..+|+..++.++.+++....+....+.|+..+.+...+
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999998777777777777777765444
No 129
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.73 E-value=6.8e-08 Score=69.59 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=61.4
Q ss_pred cccccCCCCeEEEEEEec-CC-CCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--ce----------EEEeec
Q 024778 175 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--AY----------ILLFLK 240 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k-~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~~----------i~l~K~ 240 (262)
+|.|.||-+.|+|+|-+. |+ +..+|.|+|+.++|.|.+...++..-.++-+||+.|++ ++ |+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 599999999999999876 53 57899999999999999864333334577799999999 33 999999
Q ss_pred CCCCCCCcc
Q 024778 241 GLIHHPFLD 249 (262)
Q Consensus 241 ~~~~W~~l~ 249 (262)
...-|++|=
T Consensus 86 ~~~wW~~v~ 94 (102)
T cd06495 86 SEVWWNAVL 94 (102)
T ss_pred CCcccchhh
Confidence 877899973
No 130
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.72 E-value=1.5e-07 Score=89.42 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~ 79 (262)
.+...++.+|-.|+|..+..++.-++...-+. ++.++.+|.+|..+|+|+.|..+|..++..++++ .-+++.+|++
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 56677888889999999999988888876444 4558889999999999999999999999999888 6788999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+...|+++.|..+|++.++..|++.+....++.++...
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 99999999999999999999999988888888777666
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.9e-07 Score=88.79 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
||+.++..|..+...|+|++|-.+|.++++.++++ ...++.+|+.|++.|+++.|+.+|++++...|++.+....+|..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 46789999999999999999999999999999998 77899999999999999999999999999999999999999999
Q ss_pred HHHhh----cHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 80 ~~~lg----~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
|...+ ..+.|...+.++++..|.+.+++..++.+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99886 67889999999999999988776655554
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=2.6e-07 Score=81.56 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS----KAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~~~~g~~ 79 (262)
.+...|..+...|++++|+..+.+++..+|+++.++..+|.+|+..|++++|+..+.+++...|... ..++.+|.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999876432 456789999
Q ss_pred HHHhhcHHHHHHHHHHhhccCC
Q 024778 80 CMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p 101 (262)
+..+|++++|...|++++...|
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999987666
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=98.69 E-value=3.7e-07 Score=81.52 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhh---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCC
Q 024778 4 DLEKKAKEAFIDD---YFELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (262)
Q Consensus 4 ~l~~~g~~~~~~~---~~~~Ai~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~ 68 (262)
.++.+|...+..+ +...|+.+|.+|+ .++|..+.+|..+|.||+.+ ....+|.+.+++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566676665544 4557888999999 88999999999999999876 2356788899999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 69 ~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
++.+++.+|.++...++++.|...|++++.++|+...++...+.+....+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNE 386 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999887766666444333
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.68 E-value=3.6e-07 Score=81.43 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=51.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
.+..++..++-.+|++.+.++|...|.+..++...|..++..++++.|+..+++++.+.|....+|+.++.+|..+|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhh
Q 024778 88 TAKVALEKGA 97 (262)
Q Consensus 88 ~A~~~~~~a~ 97 (262)
.|+..+..+-
T Consensus 286 ~ALlaLNs~P 295 (395)
T PF09295_consen 286 NALLALNSCP 295 (395)
T ss_pred HHHHHHhcCc
Confidence 5555555433
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=4.8e-07 Score=76.87 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
..-..|-...+|++||+.-.+..++.+.. +.+|+.+|..+....+++.|+..+.+|++.+|.+..+-..+|.++.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 33444555556666666665555555443 4556666666666666666666666666666666666666666666
Q ss_pred HhhcHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGD-SRFTNLIKECEERIAE 119 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~l~~ 119 (262)
..|+|..|++.++.+++.||+. +++...+..|+..+++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 6666666666666666666653 3344555555555554
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.66 E-value=4.7e-07 Score=87.89 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
+...|..+...|+|++|+++|+++++.+|+++.++..++.+|...++.++|+..+.+++..+|.+... ..++.++..++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 34447788889999999999999999999999999999999999999999999999999999986554 55566665677
Q ss_pred cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
++.+|+..|+++++++|++..+...+..+..+++
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 7777999999999999999887665555544443
No 137
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=5.7e-07 Score=83.29 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHc--CCCC
Q 024778 3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--------NFTEAVADANRAIEL--EPSM 69 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~l--~p~~ 69 (262)
-.++.+|..++..++ +..|+.+|++|++++|+++.++..++.+|.... +...+...+.+++.+ ++..
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 456778888876554 889999999999999999999988888886642 234555666665554 6667
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+.+|.-+|.++...|++++|...|++++.++|+ ......++++....|+...+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 788888888888888999999999999998884 55677777777666654443
No 138
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.6e-07 Score=79.95 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHcc
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------AELFADRAQASIKLQ 50 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------------------~~~~~~~a~~~~~~~ 50 (262)
+...+..+-.++++++|+++|..+++.+|.+ +++++|+|.|.+.-+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 4456666677777777777777777777765 566777777777777
Q ss_pred CHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 51 NFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 51 ~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+++-++..+.+|+..... -...||++|.+....|++.-|..+|+-++..++++.++..+++-+..+-+..
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 777777777777766432 2357777777777778888888888888888887777777777666555543
No 139
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.63 E-value=1.6e-06 Score=78.49 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~ 82 (262)
.....|...+..|+|+.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+...++.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777777777777777777777777777777664 345556777777
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.|+++.|...++..++.+|+++.+...+..+....++..
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 777777777777777777777777666666666665544
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=2e-06 Score=70.90 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=99.0
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---cH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EY 86 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg---~~ 86 (262)
-..-..|+-.+||+.+...++..+.|.++|..++.+|+..|+|+.|.-+++..+-+.|.++..+.++|.+++-+| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 344567888899999999999999999999999999999999999999999999999999999999999999877 57
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.-|..+|.++++++|.+-.....+-.|-..+.+..
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~s 242 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLCGSALAQIS 242 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHh
Confidence 78999999999999977777666767766666443
No 141
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=8.3e-07 Score=75.45 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATA 79 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~ 79 (262)
+|+-+++.+..+....+.+.|...+.+|+..+|++..+-+.+|.++...|+|..|++.++.+++-+|... ++.-.+..|
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999999875 788899999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
|..+|+.+++..++.++.+..++..
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCcc
Confidence 9999999999999999999887654
No 142
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=5.2e-07 Score=84.04 Aligned_cols=120 Identities=17% Similarity=0.077 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..+...++-++|..++.+|-.++|..+..|+.+|.++...|++.+|...|..|+.++|++....-.+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 45567778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 84 EEYETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 84 g~~~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|+-.-|.. .+..+++++|.+.++|..++++.+.+|....+
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 99888888 99999999999999999999999999876544
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.3e-07 Score=74.97 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=97.6
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc---HHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKV 91 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~---~~~A~~ 91 (262)
..+.+..+.-++.-|..+|+|+.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++...+ -.+|..
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34567778888999999999999999999999999999999999999999999999999999999987654 578999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 92 ALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
.|++++.++|.|......+.......++...+
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A 246 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999999998887777766554
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=6.3e-07 Score=71.21 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHH
Q 024778 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (262)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (262)
..+.+++.+|.++...|++++|+..|++++.+.++. ..+++.+|.++..+|++++|+.+|++++...|++......+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 457789999999999999999999999999987653 46899999999999999999999999999999998887777
Q ss_pred HHHHHHHHH
Q 024778 111 KECEERIAE 119 (262)
Q Consensus 111 ~~~~~~l~~ 119 (262)
+.+...+++
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777766544
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=1.3e-07 Score=64.86 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----C---CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELE----P---SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
+.++.++|.+|..+|+|++|+..|++++.+. + ....+++++|.++..+|++++|+.+|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677788888888888888888888888651 1 12467888888888888888888888888764
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=5.5e-07 Score=66.20 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC---HHHHHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNL 109 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~---~~~~~~ 109 (262)
+..++.+|..+...|++++|+..|..++..+|++ ..+++.+|.+++..|++++|+..|+.++..+|++ ..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999876 5789999999999999999999999999999885 345566
Q ss_pred HHHHHHHHHHh
Q 024778 110 IKECEERIAEE 120 (262)
Q Consensus 110 l~~~~~~l~~~ 120 (262)
++.+...+++.
T Consensus 82 ~~~~~~~~~~~ 92 (119)
T TIGR02795 82 LGMSLQELGDK 92 (119)
T ss_pred HHHHHHHhCCh
Confidence 66666655543
No 147
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-07 Score=82.29 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.-|+..|..|+..|++.+|.++|.+|..++|..+.+|...|..|...++.+.|+..|..|-++-|+.....+.+|.-|.+
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
++++.-|..+|..++.+.|.|+-+...++-
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGV 422 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence 999999999999999999999865544443
No 148
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.3e-07 Score=83.19 Aligned_cols=107 Identities=26% Similarity=0.286 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
++..+..|+..+..+....|+..|.+++...|....++.+|+.++++. |+.-.|+.++..|++++|...++||+++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 346678889999999999999999999999999999999999999987 67889999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
++..++++.+|+.+...+....|.+.....
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhhhhh
Confidence 999999999999999888888886654333
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=1.7e-06 Score=77.30 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=85.7
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
..+-.+|.++..+|++++|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+|+.+|.+++..|+.++|.+.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCHH
Q 024778 95 KGASLAPGDSR 105 (262)
Q Consensus 95 ~a~~l~p~~~~ 105 (262)
++++++|....
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999997543
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=7.4e-07 Score=86.26 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------- 69 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------------- 69 (262)
.++......+...+++++|+..+..++...|+...+++..|.+++..+++.++... .++.+.+.+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 35667778888999999999999999999999999999999999998887766554 455544444
Q ss_pred ------HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 70 ------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 70 ------~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
-.|++.+|.||-.+|++++|...|+++++++|+|+.+...++......
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 389999999999999999999999999999999998887777655444
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=9.3e-07 Score=77.98 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHH-------------------------------------HHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF-------------------------------------ADRAQAS 46 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-------------------------------------~~~a~~~ 46 (262)
.....|..++..|++++|+..+.+++..+|++..++ ..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 355677888888999999999998888888765332 3455566
Q ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHhhc
Q 024778 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF----TNLIKECEERIAEETG 122 (262)
Q Consensus 47 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~----~~~l~~~~~~l~~~~~ 122 (262)
...|++++|+..+++++.++|++..++..+|.+++..|++++|+.++++++...|.++.. ...+..+....++...
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 677778888888888888888887777888888888888888888888888777643322 2235555555555555
Q ss_pred c
Q 024778 123 E 123 (262)
Q Consensus 123 ~ 123 (262)
+
T Consensus 205 A 205 (355)
T cd05804 205 A 205 (355)
T ss_pred H
Confidence 4
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.53 E-value=1.3e-06 Score=79.02 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~~~g~~ 79 (262)
.....|..+...|++++|+..+.++++..|++.... ..+....+..++...++..++++++.+|+++ ..+..+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 456778899999999999999999999999987531 2234444456888999999999999999999 888899999
Q ss_pred HHHhhcHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
++.+|+|++|..+|+ .+++..|++... ..++.+..++++...
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAE 388 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHH
Confidence 999999999999999 577788877654 477777776665433
No 153
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=7.7e-06 Score=67.83 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 75 (262)
+..|++.|...++.|+|.+|+..|..+....|.+ ..+.+.++.++++.++|++|+..+++-+.+.|.++ -++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4678999999999999999999999999998876 47889999999999999999999999999998764 57889
Q ss_pred HHHHHHHhh--------cHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHH
Q 024778 76 KATACMKLE--------EYETAKVALEKGASLAPGDS---RFTNLIKECEERIA 118 (262)
Q Consensus 76 ~g~~~~~lg--------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~ 118 (262)
+|.+++..- ....|+..|+..+...|+.+ .+...+..+..++.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 999877642 35678889999999999864 34444444444444
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=2e-06 Score=79.65 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 17 YFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
+...+.....+++.+ ++.++.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|.+.|+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666667776664 777888999999999999999999999999999999 57899999999999999999999999
Q ss_pred HhhccCCCCHH
Q 024778 95 KGASLAPGDSR 105 (262)
Q Consensus 95 ~a~~l~p~~~~ 105 (262)
+++.++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999999885
No 155
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.52 E-value=4.4e-06 Score=79.18 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..+-..||..+++.....|-.++|.+...|..++....++|++.+|.-+|.+|++++|.+.+..++++..|.+
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCC
Q 024778 83 LEEYETAKVALEKGASLAP 101 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p 101 (262)
+|++..|+..|.+.+.+.|
T Consensus 254 ~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.51 E-value=5.4e-06 Score=74.73 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKL 83 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~l 83 (262)
.+..|...+..|||+.|.+...++-...+.....+...+.+...+|+++.|...+.++.+.+|+... .....+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 3455555555566665555555443332222222322333335556666666666666555555432 223335555556
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
|+++.|...+++..+.+|+++.+...+..++.+.++.
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 6666666666666666666555555555555444433
No 157
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=5.4e-07 Score=86.02 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 42 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
||..|...+++..|+.+++.+++.+|.+..+|..+|.+|...|+|..|+..|.++..++|.+.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 444444445555555555555555555555555555555555555555555555555555543
No 158
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=7.2e-07 Score=76.02 Aligned_cols=116 Identities=13% Similarity=0.008 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
-+.-....|.+..+...|+..|.+.|+..|.+...++..|.+|..++++++|++.|..++.++|.+.++....|.-|+.-
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~ 337 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYD 337 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccC
Confidence 34445555666666666666666666667777777777777777777777777777777777777777777777777777
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
++.+-|+.+|++.+.+.-.++++.-+++.|-.-.++
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 777777777777777777777777777766544443
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=4.1e-07 Score=62.29 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SPN----SAELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~---~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
+..+...|..++..|+|++|+.+|++++.+ .++ -+.++.++|.+|..+|++++|+..+++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567899999999999999999999999976 221 2678999999999999999999999999876
No 160
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=7.9e-07 Score=82.48 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=73.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 40 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
..+|...+..++|.++..+++..++++|-....||++|.+..++++++.|..+|.+++.++|++.+.+.++...+-++++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence 33344444558999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred hhcc
Q 024778 120 ETGE 123 (262)
Q Consensus 120 ~~~~ 123 (262)
...+
T Consensus 569 k~ra 572 (777)
T KOG1128|consen 569 KKRA 572 (777)
T ss_pred hHHH
Confidence 5443
No 161
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.44 E-value=1.8e-06 Score=79.13 Aligned_cols=121 Identities=22% Similarity=0.238 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 66 (262)
.-+...|..|...++|.+|+.+|.+||.+ +|.-+..+.++|.+|.+.|+|.+|..++++|+.+.
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 34456899999999999999999999987 33346889999999999999999999999999873
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC-----CCC---HHHHHHHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLA-----PGD---SRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~~~~~l~~~~~~ 123 (262)
+.-...+..++.++..++++++|..++++++++. +++ ......++.+...+++...+
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence 2334678889999999999999999999999853 233 23556677777777766554
No 162
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.5e-06 Score=74.00 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-----------------------------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------------------------- 52 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------------------------- 52 (262)
++.+.+.++.|-...+..+||++|.++..+-|+++..+..+|..|-+-|+-
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 456778888888888888899999998888888888888888777665543
Q ss_pred -----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 53 -----TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 53 -----~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+.|+.+|++|-.+.|...+-++..+.|+.+.|+|..|...|+.....-|.+-+....|-++...++
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 346666666666666666666777777777777777777777777777777776666666655554
No 163
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=8.7e-07 Score=84.64 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+..+|-.+.+.+++.+|+..|+.||+.+|.+..+|..+|.+|...|.|.-|++.|.+|..++|.+..+.|..+.+...+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
|+|.+|...+...+........++..+..+.-++.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999888766655555555655555443
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.38 E-value=2e-06 Score=66.82 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=83.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHH
Q 024778 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (262)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (262)
+.++.-...+..|.-++..|++++|...|+-....++.+...++.+|.++..+++|+.|+.+|..+..++++|+......
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34444677889999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhcc
Q 024778 111 KECEERIAEETGE 123 (262)
Q Consensus 111 ~~~~~~l~~~~~~ 123 (262)
+.|.-.+++...+
T Consensus 112 gqC~l~l~~~~~A 124 (165)
T PRK15331 112 GQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHHhCCHHHH
Confidence 8888888766554
No 165
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.38 E-value=6e-06 Score=74.43 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.....|..+...|+.++|...+.++++.. .+..+...++.+ ..++.++++..++..++.+|+++..++.+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 44566888999999999999999999954 456555445544 459999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
++|++|..+|+++++..|++.. ...+..+..++++...
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEE 379 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 3467777777665443
No 166
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.2e-06 Score=74.10 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL----------------------------------FADRAQASIKL 49 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~----------------------------------~~~~a~~~~~~ 49 (262)
-+...|..++..|++.+|+..|.++..++|..... |+--+..++..
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 45678899999999999999999999999987322 22223334455
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 50 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
++|..|+...+++|+.+|++..++...|.++..+|+.++|+-.|+.++.+.|.+-+..+.+-.++-..+..
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 78888999999999999999999999999999999999999999999999998877777666665555443
No 167
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=2.8e-06 Score=77.89 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CC
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP 67 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p 67 (262)
.+...|..|...|+|+.|+..+..|+++ .+.-...+..+|..|..+++|.+|+..|.+|+.+ +|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3456889999999999999999999998 4544566667999999999999999999999986 23
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.-..++.++|.+|...|+|++|..++++++++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999863
No 168
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.35 E-value=1.2e-05 Score=74.38 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
|+++.+|+.|...|++++|+..+++||...|..++.|+.+|.++.+.|++.+|..+++.+..++..|.-+-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNs 266 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINS 266 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHH
Confidence 455666666666677777777777777767766666666777777777777777777766666666554333
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=5.8e-07 Score=62.59 Aligned_cols=75 Identities=21% Similarity=0.377 Sum_probs=64.6
Q ss_pred ccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 49 LQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 49 ~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
.|+|+.|+..+++++..+|. +...++.+|.+++.+|+|++|+..+++ ...++.+......++.|...+++...++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999999999995 466788899999999999999999999 8888888788888899999988876653
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.32 E-value=2.1e-05 Score=62.25 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~ 80 (262)
.-+..|+.+...|+|.+|...|.+++.- ..+++..+..++++.+..+++..|...+++..+.+|. .+..++.+|.++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 4567899999999999999999999974 6788999999999999999999999999999999885 467889999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCH
Q 024778 81 MKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
..+|.+.+|...|+.++...|+-.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999998754
No 171
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=5.8e-06 Score=75.96 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..+...|+-++|..+...+++.++.+..+|.-+|..+..-++|++|+.+|+.|+.++|++...+.-++....++
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM 122 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 34555666666777777777777777777777777777777776667777777777777777777777777777777777
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
++|+.....-.+.+++.|.....+..++..+-.++.
T Consensus 123 Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 777776666666666666655544444444444443
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=5.9e-06 Score=65.97 Aligned_cols=69 Identities=28% Similarity=0.374 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 73 (262)
|.++|.++++.+.++.||..+.+||.++|....++..||.+|.++.+|++|+.+|.+.+.++|...++.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 567888999999999999999999999999999999999999999999999999999999999876543
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.30 E-value=2.9e-05 Score=63.37 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCCC
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~l~p~ 68 (262)
+.++..|.+++..|+|..|+..|++.++..|++ ..+++.+|.+++.+. ...+|+..++..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999999999987 478999999987653 345899999999999997
Q ss_pred CH-----------------HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH---HHHHHHHHHHHHh
Q 024778 69 MS-----------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIAEE 120 (262)
Q Consensus 69 ~~-----------------~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~---~~l~~~~~~l~~~ 120 (262)
.. .--+..|.-|+..|.|..|+.-|+.+++..|+.+... ..+..+..+++..
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 42 2234578888899999999999999999999876544 4455555555543
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.30 E-value=6e-06 Score=61.48 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC---CHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~---~~~~~~~l 110 (262)
.+++.+|.++-.+|+.++|+..|++++...... ..+++.+|..+..+|++++|...|+.++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568899999999999999999999999976543 579999999999999999999999999998888 66666666
Q ss_pred HHHHHHHHHhhcc
Q 024778 111 KECEERIAEETGE 123 (262)
Q Consensus 111 ~~~~~~l~~~~~~ 123 (262)
..+...+++...+
T Consensus 82 Al~L~~~gr~~eA 94 (120)
T PF12688_consen 82 ALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHCCCHHHH
Confidence 6666665554443
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.29 E-value=1.3e-05 Score=73.89 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.|+.-+.....+++.++|++.++.+++..|...+.|+.+|+++..+++.+.|...|..+++.-|+..-++..+.+++++.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 34444444445566677777777777777777777777777777777777777777777777777766666666666665
Q ss_pred H
Q 024778 118 A 118 (262)
Q Consensus 118 ~ 118 (262)
+
T Consensus 733 ~ 733 (913)
T KOG0495|consen 733 G 733 (913)
T ss_pred c
Confidence 4
No 176
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.29 E-value=1.1e-05 Score=74.43 Aligned_cols=117 Identities=17% Similarity=0.061 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.++.-++.....++.++|+.++.++|+..|+...+|+.+|+++..+++.+.|...|...+...|..+-.|..++.+-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 34556666677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.|..-.|...|+++...+|++..++...-+.+.+.+.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 9999999999999999999988765444444444443
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=1.8e-05 Score=70.72 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=99.4
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 024778 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~ 92 (262)
...+.++.|+..|.+....+|+ ....++.+++..++..+|++.+.+++...|.+...+...+..+...++++.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4467899999999999888875 4556899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 93 LEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
.+++..+.|++...+..|..++-.+++.+.+.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999887763
No 178
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=8.5e-06 Score=71.50 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..|+-.|..++..++|..|+.+-.++|+.+|++..++...|.++..+++.++|+-.|+.|..+.|.....|..+-.+|..
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 35666677778888888888888888888888888888888888888888888888888888888777777777777777
Q ss_pred hhcHHHHHHHHHHhhccCCCC
Q 024778 83 LEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.|++.+|......+...-|.+
T Consensus 381 ~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcc
Confidence 776665554444444443333
No 179
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=2e-05 Score=76.54 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----------------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL----------------- 65 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----------------- 65 (262)
.+++.+|.+|-++|++++|...|+++|+.+|+|+.++.++|..|... ++++|+..+.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999 999999999998875
Q ss_pred ---CCCCHHH--------------------HHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 66 ---EPSMSKA--------------------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 66 ---~p~~~~a--------------------~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
+|.+... +.-+-.+|..+++|++++..|+.+++++|+|.-++..+..|...
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2332222 22233778888999999999999999999999898888888873
No 180
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.5e-06 Score=65.03 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=59.3
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec-CCCCeeeecccccccccc---ce--------EEEeecCC
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKVYM---AY--------ILLFLKGL 242 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~ 242 (262)
...|+|..+.|.++|-+. ...++.|.+++..|+++-.. +++..|...|+||++|+| ++ ..++|++.
T Consensus 9 ~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKEL 86 (180)
T ss_pred cchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcccc
Confidence 467999999999999886 45888999999888887554 557788888999999999 22 55666665
Q ss_pred -CCCCCccC
Q 024778 243 -IHHPFLDH 250 (262)
Q Consensus 243 -~~W~~l~~ 250 (262)
..|+.|-.
T Consensus 87 ~~~WprLtk 95 (180)
T KOG3158|consen 87 GEYWPRLTK 95 (180)
T ss_pred ccccchhhh
Confidence 79999954
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.20 E-value=6.1e-05 Score=57.94 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 61 (262)
.+...|......++...++..+.+++.+...+ ..++..++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34556777788899999999999999985332 34566677778889999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 62 al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
++.++|.+-.+|..+-.+|..+|++.+|+..|+++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.19 E-value=9.2e-05 Score=62.19 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANR 61 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~------------------~~~A~~~~~~ 61 (262)
...+..|..+++.++|.+|+..|++.++.+|++ ..+++.+|.++..++. -..|+..++.
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999887 5789999998755541 2578899999
Q ss_pred HHHcCCCCH---H--------------HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH---HHHHHHHHHHHH
Q 024778 62 AIELEPSMS---K--------------AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIAE 119 (262)
Q Consensus 62 al~l~p~~~---~--------------a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~---~~l~~~~~~l~~ 119 (262)
.+...|+.. . --+..|.-|++.|.|..|+.-++.+++..|+.+... ..+......++.
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 999999742 1 224567778889999999999999999999876544 344444444443
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.6e-06 Score=50.55 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
++..+|.+|..+|++++|++.|+++++.+|++..+++.+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555555554
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.15 E-value=2.4e-05 Score=66.38 Aligned_cols=87 Identities=9% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH---HHHH
Q 024778 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTN 108 (262)
Q Consensus 36 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~---~~~~ 108 (262)
....+..|..+ ++.|+|++|+..|+..+...|+. ..++|.+|.+|+..|+|++|+..|++++...|+++ ++..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677888877 56799999999999999999987 47999999999999999999999999999988754 4555
Q ss_pred HHHHHHHHHHHhhc
Q 024778 109 LIKECEERIAEETG 122 (262)
Q Consensus 109 ~l~~~~~~l~~~~~ 122 (262)
.++.+...+++...
T Consensus 222 klg~~~~~~g~~~~ 235 (263)
T PRK10803 222 KVGVIMQDKGDTAK 235 (263)
T ss_pred HHHHHHHHcCCHHH
Confidence 55666665554433
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=1.8e-05 Score=68.36 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HcCC----
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------------ELEP---- 67 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------------~l~p---- 67 (262)
.-.|.++|+.|||++|+..|+-+...+..++.++.++|.|++.+|.|.+|.....++- +++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 3468899999999999999999998877789999999999999999999987665442 1111
Q ss_pred --------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 68 --------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 68 --------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+..+-.+.+|.+++..-.|++|++.|.+.+.-+|+...+-..++.|..++.-.
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence 12345667888888888999999999999998888877777888887777533
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.12 E-value=9.8e-05 Score=68.37 Aligned_cols=96 Identities=20% Similarity=0.119 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
++-.+..+-..|++++|+++.++||...|+.+++|+..|.+|-+.|++.+|...++.|..+|..+-...-..+..+.+.|
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 46678888899999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred cHHHHHHHHHHhhccC
Q 024778 85 EYETAKVALEKGASLA 100 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~ 100 (262)
+.++|...+......+
T Consensus 277 ~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 277 RIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHhhcCCC
Confidence 9999999988776654
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.11 E-value=3.3e-06 Score=48.18 Aligned_cols=31 Identities=35% Similarity=0.637 Sum_probs=15.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 024778 25 YSQAIEISPNSAELFADRAQASIKLQNFTEA 55 (262)
Q Consensus 25 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 55 (262)
|++||+++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 4455555555555555555555555555544
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=2.9e-05 Score=66.70 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------
Q 024778 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~-~~~~~Ai~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------ 68 (262)
|..+...|..+... |+++.|+++|.+|+..... . ..++.+.|.++..+|+|++|+..|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 45677888888888 9999999999999997422 2 467889999999999999999999999875322
Q ss_pred CH-HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 69 MS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 69 ~~-~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
.. ..++..++|+...|++-.|...|+++...+|...
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 12 4567888899999999999999999999998653
No 189
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.9e-06 Score=62.87 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC---------------CCeeeecccccccccc-----c
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKVYM-----A 233 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~L~~~i~~-----~ 233 (262)
..+|+|++++.+.|++-+.|+.++++.|++.++.|+|+....+ ...|...+.|...|+| +
T Consensus 41 P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~ 120 (146)
T COG0071 41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAK 120 (146)
T ss_pred CcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeE
Confidence 4699999999999999999999999999999999999987654 2569999999999998 4
Q ss_pred e------EEEeecCCC
Q 024778 234 Y------ILLFLKGLI 243 (262)
Q Consensus 234 ~------i~l~K~~~~ 243 (262)
| |+|.|.++.
T Consensus 121 ~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 121 YKNGLLTVTLPKAEPE 136 (146)
T ss_pred eeCcEEEEEEeccccc
Confidence 4 999998753
No 190
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.10 E-value=5e-06 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
.+|+++|.+++.+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 191
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.08 E-value=1.2e-05 Score=57.05 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=48.9
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEeee-EEEEEEecCC---------------CCeeeecccccccccc
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVPG---------------EEAYHFQPRLFGKVYM 232 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~-~~~~~~~~~~---------------~~~~~~~~~L~~~i~~ 232 (262)
|+||+++++.+.|.+.+.|+.|+++.|++.++ .|+|+-.... ...|..++.|...|++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~ 74 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADA 74 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCH
Confidence 57999999999999999999999999999875 7888753211 1368888999999998
No 192
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.08 E-value=5.1e-05 Score=65.41 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=68.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
....++..++++.|...+..+-+.+.++......-|.+.+..| ++.+|.-.|+......+..+..+..+|.++..+|+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 3455667777777777777766665554433333333444444 46777777777666666666777777777777777
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
|++|...++.++..+|+++.....+.-|...+++
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 7777777777777777777766666555555443
No 193
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.07 E-value=7.4e-06 Score=70.37 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=61.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
+-.+|.-|+++|.|++|+++|.+++.++|.++..+.++|.+|+.+..|..|...+..++.++....
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~ 165 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV 165 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 456899999999999999999999999999999999999999999999999999999998876543
No 194
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=1.9e-05 Score=63.89 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
|+..+.-.|..+...|+|+.|.+.|+..++++|..--++.|||.+++.-|+|..|.+++.+-.+-||+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 67788889999999999999999999999999999999999999999999999999999888877764
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.05 E-value=5.2e-06 Score=47.36 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=30.8
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHH
Q 024778 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 59 ~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
|++||+++|++..+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.05 E-value=1e-05 Score=45.77 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.+++.+|.+++.+|+|++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.04 E-value=1e-05 Score=49.00 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
.+++.+|.+|..+|++++|+..|+++++.+|+++.++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999998877754
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.03 E-value=1.1e-05 Score=45.86 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 199
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=98.01 E-value=7e-06 Score=63.56 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=58.9
Q ss_pred cccccccCCCCeEEEEE-EecCC-CCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc--ce----------EEEe
Q 024778 173 KYRHEFYQKPEEVVVTV-FAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM--AY----------ILLF 238 (262)
Q Consensus 173 ~~~~~~~q~~~~v~v~i-~~k~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~~----------i~l~ 238 (262)
.-.|.|+||=+.|.|.| +.+|. ...+|.|.+..++|.|.+. |..-.++-+|+++|++ .+ |.|+
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~ 94 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLK 94 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEee
Confidence 34699999999999998 45677 8899999999999988863 6667888899999999 32 5666
Q ss_pred ecCC-CCCCCc
Q 024778 239 LKGL-IHHPFL 248 (262)
Q Consensus 239 K~~~-~~W~~l 248 (262)
|... .-|.+|
T Consensus 95 K~~~~eWW~~l 105 (179)
T KOG2265|consen 95 KSNKMEWWDSL 105 (179)
T ss_pred ccchHHHHHHH
Confidence 6653 589886
No 200
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.01 E-value=6.9e-05 Score=64.57 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=80.0
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcH-HHHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALE 94 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~-~~A~~~~~ 94 (262)
+.+.+|.-.|++.....+.++..+..+|.|++.+|+|++|...+..++..+|.++.++.+++.+...+|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 36999999999988877888999999999999999999999999999999999999999999999999998 66778888
Q ss_pred HhhccCCCCHHHHHH
Q 024778 95 KGASLAPGDSRFTNL 109 (262)
Q Consensus 95 ~a~~l~p~~~~~~~~ 109 (262)
+....+|+++-+...
T Consensus 261 qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 261 QLKQSNPNHPLVKDL 275 (290)
T ss_dssp HCHHHTTTSHHHHHH
T ss_pred HHHHhCCCChHHHHH
Confidence 888899988754443
No 201
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00022 Score=65.28 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----------------
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----------------- 68 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----------------- 68 (262)
++.+.++|+.+..++|+.+++ ..++.+..++.-+|+.++++++|++|++.|+..+..+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 789999999999999999999 456666678888999999999999999999988654321
Q ss_pred --------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 69 --------------MSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 69 --------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
....+|+.|.++...|+|.+|++.+++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 35678999999999999999999999993
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0001 Score=63.86 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=81.4
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
..++...||..|+.+++-.+..+.... ..-.-+|.|++++|+|++|+..|..+...+....+.+.++|.|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456788999999999998887654433 4556689999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 89 AKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
|.....+| |+++--.+.+-.+.-++
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 98777655 44444334444433333
No 203
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.92 E-value=7e-05 Score=47.12 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
..+|.+|.+++.+|+|.+|..+.+.++++.|+|..+......++.++.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999998888888888877653
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.92 E-value=0.00018 Score=52.67 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------C
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIKLQNFTEAVADANRAIEL-------E 66 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~ 66 (262)
...|..-+..|-|.+|...|.+|+....+ ++-++..++.++..+|+|++++...++++.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 45667778999999999999999987432 2567888999999999999999999888864 3
Q ss_pred CC----CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 67 PS----MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 67 p~----~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
.+ .+.+-|++|.++..+|+.++|+..|+++-+
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33 346789999999999999999999987765
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=5.4e-05 Score=65.01 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=71.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCC------CHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEPS------MSKAY 73 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~------~~~a~ 73 (262)
..+-.+++..++.+|+.+|.+|+.+.-.. +.++..+|.+|... ++++.|+..|.+|+.+... ...++
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 33444556669999999999999873221 57888999999888 9999999999999987321 13577
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 74 WRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
...|.++..+|+|++|+..|++.....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 889999999999999999999887643
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.90 E-value=7.6e-06 Score=71.85 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCC--
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELE----PSM-- 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~~-- 69 (262)
.+.+-+.|+.||-.|||+.||..-..-|.+... .-.++.++|.||.-+|+|+.|+++|.+++.+. ..-
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 456678899999999999999987777766322 14689999999999999999999998877653 222
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.+.-|.+|..|..+++++.|+.++.+-+.+.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556889999999999999999998877654
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00052 Score=58.12 Aligned_cols=115 Identities=21% Similarity=0.121 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN----------------------- 60 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------------- 60 (262)
..+..+..+...|++.+|...|..++...|.+..+...++.||...|+.+.|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 346678889999999999999999999999999999999999999999866533332
Q ss_pred -----------HHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHH
Q 024778 61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIA 118 (262)
Q Consensus 61 -----------~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~l~ 118 (262)
..+..+|++..+-+.+|..+...|++++|.+.+-..++.+-+ +...++.+-.+-..++
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222337889999999999999999999999999888887653 4556666655555554
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.87 E-value=0.00011 Score=56.02 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+..++..|...+..|+|.+|+..++.+....|.. ..+.+.+|.+|+..++|.+|+..+++.++++|.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 36778899999999999999999999999998864 489999999999999999999999999999999875
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00013 Score=61.11 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH---HHHHHHHH
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKE 112 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~---~~~~~l~~ 112 (262)
.++.|.-+++.|+|..|...|..-+...|+. +.++|-||.+++.+|+|.+|...|..+.+-.|+.+ +...-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999975 58999999999999999999999999999888765 45555666
Q ss_pred HHHHHHHhhc
Q 024778 113 CEERIAEETG 122 (262)
Q Consensus 113 ~~~~l~~~~~ 122 (262)
|..++++...
T Consensus 224 ~~~~l~~~d~ 233 (262)
T COG1729 224 SLGRLGNTDE 233 (262)
T ss_pred HHHHhcCHHH
Confidence 6666665443
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.86 E-value=4.3e-05 Score=43.11 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
.+++.+|.+|+.+|++++|+.++++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00036 Score=59.26 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=91.5
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A 89 (262)
..+.+..+|..||+++.--.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|...+..+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 34588999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 90 KVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+....... +++.+....-.++..++-.
T Consensus 98 LrV~~~~~----D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 98 LRVAFLLL----DNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHhc----CCHHHHHHHHHHHHHHhcc
Confidence 87766543 3456666666666666543
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.00063 Score=64.99 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
.+--......++|..|+....+.++..|+...+....|..+.++|++++|..+++..-...+++-..+-.+-.+|..+++
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 33445678899999999999999999999999999999999999999999988877777777888888889999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+++|..+|+++...+|+ .+....+-.++-+.+..
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 66655555555555443
No 213
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.77 E-value=0.0003 Score=55.49 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHh----------hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHH
Q 024778 2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADAN 60 (262)
Q Consensus 2 a~~l~~~g~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~ 60 (262)
++.|.+-|.+++.. .-+++|+.-|++||.++|+...+++++|.+|..++. |++|..+|+
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 34566666665443 456788999999999999999999999999988743 678888999
Q ss_pred HHHHcCCCCHH
Q 024778 61 RAIELEPSMSK 71 (262)
Q Consensus 61 ~al~l~p~~~~ 71 (262)
+|...+|++..
T Consensus 105 kAv~~~P~ne~ 115 (186)
T PF06552_consen 105 KAVDEDPNNEL 115 (186)
T ss_dssp HHHHH-TT-HH
T ss_pred HHHhcCCCcHH
Confidence 99999998853
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=9.6e-05 Score=62.63 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CC----------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----PS---------- 68 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p~---------- 68 (262)
..+.+.|...|+.|+|+.|++-|+.|+....-++.+-++++.|+++.++|..|+++....+... |.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 3456778888999999999999999999988888888899999999999999998888777652 32
Q ss_pred ---------------CHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 69 ---------------MSKAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 69 ---------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
..+++...+-++++.|+++.|.+.+...
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 2356777788888888888888776543
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00043 Score=63.44 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHH---------------------------------HHHHHHHHHcc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---------------------------------ADRAQASIKLQ 50 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~---------------------------------~~~a~~~~~~~ 50 (262)
+++..-+.+...++|++|+...++.|...|++..++ +.+|.|+++++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 566667778889999999999999999988874443 35566666666
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 51 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+.++|+.++. .+++.+......+|.+++++|+|++|...|+...+.+-++.+
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 6666666665 445555567777888888888888888888888776655443
No 216
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.71 E-value=0.0013 Score=49.41 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 35 SAELFADRAQASIKLQ---NFTEAVADANRAIE-LEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-l~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
.....+++|.++.+.. +..+.+..++..+. -.|. .-++.|.++..++++++|+.|+.++..+++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4677889999998875 45678888888886 4443 34788999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q 024778 110 IKECEERIAEE 120 (262)
Q Consensus 110 l~~~~~~l~~~ 120 (262)
...++.++.++
T Consensus 111 k~~ied~itke 121 (149)
T KOG3364|consen 111 KETIEDKITKE 121 (149)
T ss_pred HHHHHHHHhhc
Confidence 88888888654
No 217
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.68 E-value=0.00013 Score=51.82 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=46.0
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC-----------------CCeeeecccccccccc
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----------------EEAYHFQPRLFGKVYM 232 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~L~~~i~~ 232 (262)
+.|++++++.+.|.+.+.|+.+++++|++.++.|+|+..... -..|...+.|. .|++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~ 75 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDE 75 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCH
Confidence 689999999999999999999999999999999999753221 02366667775 6777
No 218
>PRK10941 hypothetical protein; Provisional
Probab=97.67 E-value=0.00054 Score=58.24 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
...+.++=.+|...++++.|+.+.+..+.++|+++.-+.-+|.+|.++|++..|...|+..++..|+++.+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3566778888999999999999999999999999988889999999999999999999999999999986543
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.67 E-value=0.0024 Score=50.35 Aligned_cols=111 Identities=24% Similarity=0.218 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~ 79 (262)
.+...|......+++..++..+..++...+.+.......+. ++...++++.|+..+.+++..++ .....++.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 44556666666677777777777777766655444444444 66677777777777777766555 244555556666
Q ss_pred HHHhhcHHHHHHHHHHhhccCCC-CHHHHHHHHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPG-DSRFTNLIKECE 114 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~-~~~~~~~l~~~~ 114 (262)
+...+++..|+..+.+++...+. .......+..+.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 66677777777777777777666 344444444433
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0015 Score=52.23 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
.....+..++..+++++|+..++.++...-+. ..+-.++|.+.+.+|.+++|+..++....-+- .....-.+|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHH
Confidence 34678889999999999999999999764433 45677899999999999999987764332211 123466799999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCC
Q 024778 81 MKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
...|+-.+|+..|++++...++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCCh
Confidence 99999999999999999987443
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.00013 Score=64.26 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCC--CHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL----EPS--MSKAY 73 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~--~~~a~ 73 (262)
.+...|..++++|++...+..|..||...-.+ ..+|..+|.+|+.+++|.+|+++-..-+.+ ... ..++-
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 56788999999999999999999999997766 457889999999999999999865443333 322 34566
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 74 WRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
-++|..+..+|.|++|+.|+.+-+.
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd 123 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLD 123 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhH
Confidence 7899999999999999998877664
No 222
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.57 E-value=0.0008 Score=59.52 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
....|..+|+.++|..|+--|..||.+...- ...--.+..||+++++.+.|+.+..+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 3455667788888888888888777753221 2345678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
|.....|++.|.|+..+.+|.+|...+.-+.
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987665443
No 223
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00015 Score=62.69 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP---N----------------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p---~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
...+.|+..++.++|..|..-|.++++... . ....+.+.+.|-++++.+..|+-....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 345677889999999999999999887422 1 124466788899999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 65 l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.++....+|++++..+..+.++++|++.++.+....|++..+...+...........
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999999999999988888777766665543
No 224
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.53 E-value=0.004 Score=54.67 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~ 82 (262)
.....|..-+..|+|.+|..+..++-+-.+....++..-+.+--.+|+++.|-.++.++-+..++ ...+...++..+..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 44556666677777777777777766666665666666666666777777777777777766333 33556667777777
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.|++..|......+++..|.++........++.+++..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 77777777777777777777776666666655555543
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.51 E-value=0.00015 Score=40.85 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666666666666666666666665555
No 226
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.48 E-value=0.00039 Score=50.07 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=51.6
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC----CC---------Ceeeecccccccccc-c----e----
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKVYM-A----Y---- 234 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~----~~---------~~~~~~~~L~~~i~~-~----~---- 234 (262)
||+++++.+.|.+-+.|+.+++++|.+.++.|.|+-... ++ ..|...+.|...|++ + +
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999999999999999999999886432 22 357888899999999 2 3
Q ss_pred --EEEeecCC
Q 024778 235 --ILLFLKGL 242 (262)
Q Consensus 235 --i~l~K~~~ 242 (262)
|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 88888864
No 227
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.48 E-value=0.0022 Score=46.51 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=77.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHcCCCCHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQN-----------FTEAVADANRAIELEPSMSKAY 73 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~ 73 (262)
.+..++..||+-+|++.....+...+++. ..+...|.++.++.. +-.+++.++++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999987775 567778888876632 3468999999999999998888
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 74 WRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
|.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888888888888888765
No 228
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0031 Score=54.17 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.|....+.+.+.+..+.|-..|.+|++..+....+|...|..-+. .++.+.|...|+.++...|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356667777788889999999999996666677888888888666 5666679999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCH
Q 024778 83 LEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
+++.+.|...|++++..-+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999877665
No 229
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.45 E-value=0.0003 Score=64.53 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=95.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
..|......|+.-.|+.++..|+-..|.. ...+.++|.++++.+-.-.|-..+.+++.+....+-.++.+|.++..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 34555566899999999999999998865 35688999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
.+.|++.|+.++.++|+++....-+.++.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999998887666543
No 230
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.44 E-value=0.00043 Score=48.13 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=48.6
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC--------------CCeeeecccccccccc
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKVYM 232 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~L~~~i~~ 232 (262)
+++++++.+.|.+.+.|+.++++.|.+.++.|.|+-.... ...|...+.|...|++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~ 70 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDP 70 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCH
Confidence 5788999999999999999999999999999999853321 3579999999999999
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00035 Score=62.82 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------- 65 (262)
..++-+.+..|..|+|..|.+++... +...+. ...++.++|.++++++.|..+...|.+|++.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677888999999999999987653 222222 2456789999999999999999999999961
Q ss_pred -CC---------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 66 -EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 66 -~p---------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.| ...+..|+.|..|...|+.-.|.+||.++......+|.+|..+++|--
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 246789999999999999999999999999998888888887777643
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00035 Score=39.36 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEP 67 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 67 (262)
.+++.+|.+|..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456666666666666666666666666655
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0015 Score=54.68 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
...|...++.||-+.|..+|+..-+. + -.+-..+.+.+.+|...++|..|...+.+++..|+.++.+..+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 45678889999999999999854432 2 22345677778888888999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCC
Q 024778 80 CMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
+..+|+..+|++.++.+++..|..
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999974
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.37 E-value=0.0032 Score=47.16 Aligned_cols=70 Identities=23% Similarity=0.235 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 71 (262)
+..|.+++.++.-.|+.++|++-+++|+.+.... ..+++.||.+|..+|+.+.|..+|..+-++......
T Consensus 77 aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 77 ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 4678899999999999999999999999996543 478999999999999999999999999999876543
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00026 Score=58.16 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=67.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 40 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
-.-|.+++.-+.|..|+.+|.++|.++|..+..|-+++.|++.+.+|+.......++++++|+.......++.+.....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 3456777788899999999999999999999999999999999999999999999999999987665555555544443
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.35 E-value=0.0063 Score=47.91 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=75.3
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhcH
Q 024778 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~lg~~ 86 (262)
.++..|++..|+..|.+++...+ .....+..++..+...+++..|+..+..++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67888888888888888888666 34566666777777788888888888888888888 678888888888888888
Q ss_pred HHHHHHHHHhhccCCCC
Q 024778 87 ETAKVALEKGASLAPGD 103 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~ 103 (262)
..|...+..++...|..
T Consensus 219 ~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 219 EEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHhhCccc
Confidence 88888888888888763
No 237
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0033 Score=58.37 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
.+.+.|...|+.++|..+++.|...++..|+| +....+++.||+.+.+.+.|++.+..|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 56788899999999999999999999988876 566778999999999999999999999999999998888888
Q ss_pred HHHHHhhcHHHHHHHHHHhhcc
Q 024778 78 TACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+...-+.-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888999999999888766643
No 238
>PRK10743 heat shock protein IbpA; Provisional
Probab=97.32 E-value=0.00097 Score=50.81 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=55.8
Q ss_pred ccccc-CCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----C---------Ceeeecccccccccc---ce---
Q 024778 175 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---------EAYHFQPRLFGKVYM---AY--- 234 (262)
Q Consensus 175 ~~~~~-q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----~---------~~~~~~~~L~~~i~~---~~--- 234 (262)
.+|.+ .+++.++|.+.+.|+.|+++.|++.++.|+|+-.... + ..|..++.|...|++ +|
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~A~~~dG 115 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRGANLVNG 115 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCcCEEeCC
Confidence 37888 4899999999999999999999999999999863211 1 358889999999999 56
Q ss_pred ---EEEeecC
Q 024778 235 ---ILLFLKG 241 (262)
Q Consensus 235 ---i~l~K~~ 241 (262)
|+|.|..
T Consensus 116 VL~I~lPK~~ 125 (137)
T PRK10743 116 LLYIDLERVI 125 (137)
T ss_pred EEEEEEeCCC
Confidence 9999863
No 239
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.0017 Score=40.78 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
++++.+|..++++|+|..|...++.+++++|++.++......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46778899999999999999999999999999988766555443
No 240
>PRK10941 hypothetical protein; Provisional
Probab=97.30 E-value=0.0036 Score=53.23 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
+.+.-..+.+.++|+.|+.+.+..+.+.|+++.-+..||.+|.++|.+..|+.+++..++..|+++.+-.-+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 445567789999999999999999999999999999999999999999999999999999999998776655543
No 241
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0076 Score=50.49 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 37 ELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 37 ~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
..+..+|.++.++ +++.+|.-.|+..-...+..+..+...+.|+..+|+|++|...++.++..++++++...++--
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3344566666654 457777777777776666677788889999999999999999999999999999998888777
Q ss_pred HHHHHHH
Q 024778 113 CEERIAE 119 (262)
Q Consensus 113 ~~~~l~~ 119 (262)
+...++.
T Consensus 250 ~a~~~Gk 256 (299)
T KOG3081|consen 250 LALHLGK 256 (299)
T ss_pred HHHHhCC
Confidence 7666654
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.29 E-value=0.0027 Score=55.69 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
...+..+...|++++|.+...++|+..-+.- +....+ ..+.++...=++.+++.+...|+++..++.+|..|+..+.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 3456778899999999999999999865533 222222 2356888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
|.+|..+|+.++...|+.. ...+++++..++++.
T Consensus 344 w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~ 377 (400)
T COG3071 344 WGKASEALEAALKLRPSAS-DYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCCh
Confidence 9999999999999988654 557777777776644
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0053 Score=50.89 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
+.+...+++..|+|-++++..+.+|..+|.|..+|+.||.++...=+..+|.+++.++++++|....+-.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 5677888999999999999999999999999999999999999999999999999999999998765443
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.22 E-value=0.00075 Score=37.51 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
+++++|.++..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777666664
No 245
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.22 E-value=0.0013 Score=45.29 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=48.0
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec--CCC---Ceeeecccccccccc
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV--PGE---EAYHFQPRLFGKVYM 232 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~--~~~---~~~~~~~~L~~~i~~ 232 (262)
+.+.+++.+.|.+.++|++||++.|++.++.|+|+-.. ..+ ..|...+.|...|++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~ 62 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDP 62 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCH
Confidence 45678999999999999999999999999999998632 122 379999999999999
No 246
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.0026 Score=60.27 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK 76 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (262)
..+...|+.++..++|.++.--|..++.+-|.+ +..+.+++.||+.+ ++|..++..+..++...|....+++.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 467889999999999999999999999988744 57788888888875 699999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+.+|..++.++-|.+.+.......|.+..+...+.+++..+....
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d 178 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKD 178 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence 999999999999999988888899999777776666666664443
No 247
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.21 E-value=0.0014 Score=55.89 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
....|....+.|+.++|..+|.-||+++|+++.++..+|.....-++.-+|-.+|-+|+.++|.+.+|+.+++...
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 4556677788899999999999999999999999999998888888888899999999999999888887776543
No 248
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.011 Score=47.12 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=87.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhhcH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE-LEPSMSKAYWRKATACMKLEEY 86 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p~~~~a~~~~g~~~~~lg~~ 86 (262)
.+.....+=|.+..+....+.+.+.|.. .-.+.+|.++..+|++.+|..+|.+++. +...+...++.++.+.+.++++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3445566678888888888999998884 4466899999999999999999999885 5667888999999999999999
Q ss_pred HHHHHHHHHhhccCCCCH--HHHHHHHHHHHHHH
Q 024778 87 ETAKVALEKGASLAPGDS--RFTNLIKECEERIA 118 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~--~~~~~l~~~~~~l~ 118 (262)
.+|...++...+.+|... .-...+.+....++
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 999999999999888643 33334444444333
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.16 E-value=0.0015 Score=56.86 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------- 68 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--------- 68 (262)
.....|+++...+.|+++++.|+.|++...++ ...++.+|..|-.++++++|+-+..+|..+-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34567899999999999999999999985443 356889999999999999999999999877432
Q ss_pred -CHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 69 -MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 69 -~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
...++|+++.++..+|+..+|.++++.+.++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1357889999999999999999999888765
No 250
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=97.16 E-value=0.0017 Score=49.64 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=54.9
Q ss_pred cccccC-CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----C---------Ceeeecccccccccc---ce---
Q 024778 175 RHEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---------EAYHFQPRLFGKVYM---AY--- 234 (262)
Q Consensus 175 ~~~~~q-~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----~---------~~~~~~~~L~~~i~~---~~--- 234 (262)
.+|-++ +++.++|.+.+.|++++++.|+++++.|+|+-.... + ..|..++.|...|++ +|
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~~A~~~nG 113 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVSGATFVNG 113 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccCcCEEcCC
Confidence 378887 467899999999999999999999999999864211 1 358899999999999 56
Q ss_pred ---EEEeec
Q 024778 235 ---ILLFLK 240 (262)
Q Consensus 235 ---i~l~K~ 240 (262)
|+|.|.
T Consensus 114 VL~I~lPK~ 122 (142)
T PRK11597 114 LLHIDLIRN 122 (142)
T ss_pred EEEEEEecc
Confidence 999886
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.0041 Score=47.67 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
.+...+..+...|++.+|+..+.+++..+|.+..++..+-.+|...|+..+|+..|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456667788999999999999999999999999999999999999999999999987754
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.15 E-value=0.0096 Score=46.30 Aligned_cols=111 Identities=14% Similarity=-0.012 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+++........++..++..++...--+.|+.+.+-..-|..++..|+|.+|+..++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35777888889999999999999998889999999999999999999999999999999999999999888889999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
+|+..-=. +-..+++..+ ++........+..
T Consensus 91 ~~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 91 LGDPSWRR-YADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred cCChHHHH-HHHHHHhcCC-ChHHHHHHHHHHH
Confidence 99875432 2333444443 4444444444333
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.15 E-value=0.0039 Score=57.43 Aligned_cols=86 Identities=22% Similarity=0.172 Sum_probs=48.7
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhcHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKV 91 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~lg~~~~A~~ 91 (262)
.+...|.+++...+...|+.+..++..|..+...|+.++|++.+++++..... ..-+++.+|-++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 34455556666666666666666666666666666666666666655532222 12345556666666666666666
Q ss_pred HHHHhhccCC
Q 024778 92 ALEKGASLAP 101 (262)
Q Consensus 92 ~~~~a~~l~p 101 (262)
+|.+..+.+.
T Consensus 327 ~f~~L~~~s~ 336 (468)
T PF10300_consen 327 YFLRLLKESK 336 (468)
T ss_pred HHHHHHhccc
Confidence 6665555443
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.14 E-value=0.03 Score=46.75 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCCH-
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL--------QNFTEAVADANRAIELEPSMS- 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~p~~~- 70 (262)
+.+...+.++++.++|..|+...++-+++.|++ ..+++.+|.+++.. .--.+|+..+...+...|+..
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 367888999999999999999999999999877 46788889888765 224578899999999999731
Q ss_pred --------------HH--HHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH---HHHHHHHHHHHHHHh
Q 024778 71 --------------KA--YWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (262)
Q Consensus 71 --------------~a--~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (262)
.+ -+..|.-|...|.|-.|+.-++..++-.|+-.. ...++..+...++-.
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh
Confidence 11 134566777888999999999999998776544 445555666666543
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.0055 Score=56.46 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATA 79 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~ 79 (262)
++..|..+...|+.++|++.|++++..... ...+++.+|.|+..+.+|++|..++.+.++.+.- ..-..|..|.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 578899999999999999999999854322 2467889999999999999999999999987543 33456778888
Q ss_pred HHHhhcHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~ 98 (262)
+..+++.+.+...-+++.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~ 368 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEE 368 (468)
T ss_pred HHhhccchhhhhhHHHHHH
Confidence 8899988666555554443
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0072 Score=50.64 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCC--CCHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRKAT 78 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----l~p--~~~~a~~~~g~ 78 (262)
+-..+.+...|.|.-.+..|.+.++.+ |.++.+...+|..-++.|+.+.|...++++-+ ++. ....++.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 445667788999999999999999998 67899999999999999999999999985543 322 34467788888
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
++...++|.+|...|.+++..+|.++.+....+.|.--+++...+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 899999999999999999999999988776666666666655444
No 257
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.10 E-value=0.0012 Score=46.13 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=48.6
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----C----Ceeeecccccccccc
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----~----~~~~~~~~L~~~i~~ 232 (262)
.+++.+++.++|.+.+.|+.+|+++|++.++.|+|+-.... + ..|..++.|...|++
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~ 67 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDP 67 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCH
Confidence 47899999999999999999999999999999999864321 1 348888899999998
No 258
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.012 Score=53.17 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+..-|.--...+++..|-..|.+||..+..+..+|...+.+-++.++...|...+++|+.+-|.--+.||..-.+-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 34455555677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCH
Q 024778 84 EEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~ 104 (262)
|+...|...|++-....|+..
T Consensus 155 gNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999999754
No 259
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=97.09 E-value=0.002 Score=45.43 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=46.3
Q ss_pred ccccCCC-CeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC--------------CCeeeecccccccccc
Q 024778 176 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKVYM 232 (262)
Q Consensus 176 ~~~~q~~-~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~L~~~i~~ 232 (262)
++.++++ +..+|.+.+.|+.|+++.|.+.++.|+|+-.... -..|...+.|...|+.
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceE
Confidence 5677765 8999999999999999999999999999853211 1358888888888887
No 260
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.06 E-value=0.015 Score=49.85 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=85.4
Q ss_pred HHHHHHHHHHH-hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHHHHHH
Q 024778 4 DLEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~-~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~ 79 (262)
.|...|..-+. .++.+.|...|+.+++..|.+..++......++..++.+.|...|++++..-+... ..|-++..-
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34555655455 67888899999999999999999999999999999999999999999998866544 567777777
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (262)
-...|+.+......+++.++.|.+..+.....
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 78889999999999999999988665554433
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.04 E-value=0.0055 Score=55.56 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------------------
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS------------------- 68 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------------------- 68 (262)
.-..+.+..+.+.-+++-.+||+++|+.+.+|+-+|.-. .....+|...++++++....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 345567888899999999999999999888887776521 23345555555555443210
Q ss_pred ------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC--CHHHHHHHHHH
Q 024778 69 ------MSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKEC 113 (262)
Q Consensus 69 ------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~ 113 (262)
...+.+++|.|+.++|+.++|++.|+..++..|. +..++.++-.+
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 1335567888888899999999999888887775 23344444444
No 262
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.01 E-value=0.0027 Score=44.13 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC---C-----Ceeeecccccccccc
Q 024778 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 180 q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~---~-----~~~~~~~~L~~~i~~ 232 (262)
-+++.+.|.+.+.|+.|++++|++.++.|+|+-.... + .+|...+.|...|++
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~ 64 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDP 64 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCCh
Confidence 4678899999999999999999999999999863211 1 248889999999999
No 263
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.00 E-value=0.0023 Score=44.72 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=46.7
Q ss_pred cccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC----CC----Ceeeecccccccccc
Q 024778 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 177 ~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~----~~----~~~~~~~~L~~~i~~ 232 (262)
+-+.+++.+.|.+.+.|+.+|+++|++.++.|+|+-... ++ .+|..++.|...|++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~ 67 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQ 67 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCCh
Confidence 356789999999999999999999999999999986321 11 248888999999998
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.99 E-value=0.0017 Score=34.87 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
+++++|.++..+|++++|..+|++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5666666666677777777666666666554
No 265
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.99 E-value=0.0042 Score=53.12 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
+-.+.|.-..+.|+.++|...++.|+.++|++++++..+|......++.-+|..+|-+++.++|.+.++..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 33455555667899999999999999999999999999999999999999999999999999999877543
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.011 Score=50.95 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 69 (262)
.-|.+++-+.+..|+|..|+.-+.+|+.++|.+..+++.-|.|++.+.++.+|..+++..+.++...
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 3467888899999999999999999999999999999999999999999999999999998776544
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.97 E-value=0.0016 Score=36.10 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
+++.+|.|+.++|++++|+..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555543
No 268
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.022 Score=51.45 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|....+..+...|-..+-.||...|.+-. +-..-..-.++++++.+...|++-|...|.+..+|...|..-..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 34455566666777777777777777777776433 22333444567788888888888888888888888888888888
Q ss_pred hhcHHHHHHHHHHhhccCC
Q 024778 83 LEEYETAKVALEKGASLAP 101 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p 101 (262)
+|+.+.|...|+-|+....
T Consensus 484 LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPA 502 (677)
T ss_pred hhhHHHHHHHHHHHhcCcc
Confidence 8888888888887776543
No 269
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.90 E-value=0.0011 Score=59.43 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
+.+++.++++.++|..|+.-+.+|++.+|....+|+.+|.+.+.++.+.+|+.+|+....+.|+...+...+..|-...
T Consensus 41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999988777666665543
No 270
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.88 E-value=0.017 Score=56.00 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.+.|.+...|..++.+|...|++++
T Consensus 469 i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 34455556666666655442 1222 244455555566666666666666666666677666666667777777777777
Q ss_pred HHHHHHHhhc
Q 024778 89 AKVALEKGAS 98 (262)
Q Consensus 89 A~~~~~~a~~ 98 (262)
|.+.++...+
T Consensus 547 A~~v~~~m~~ 556 (697)
T PLN03081 547 AAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHH
Confidence 7776665553
No 271
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.055 Score=44.70 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------H-
Q 024778 5 LEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S- 70 (262)
Q Consensus 5 l~~~g~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~- 70 (262)
.+..|..|-.. .++++||.+|.+|-+-...+ -.+++.-|..--.+++|.+|++.|++.....-++ .
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34566666555 79999999999988764332 2455556666667799999999998887654433 1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
..++.-|.|++...+.-.+...+++..+++|....
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 34667788888889999999999999999997644
No 272
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.057 Score=44.60 Aligned_cols=94 Identities=23% Similarity=0.223 Sum_probs=60.3
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCC------CHHHHHHHH
Q 024778 11 EAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIK-LQNFTEAVADANRAIELEPS------MSKAYWRKA 77 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~p~------~~~a~~~~g 77 (262)
.+|+..+..+|+.++++++.+.-+-. ..+..+|..|.. +.+++.|+.+|+.+-..... --++++..+
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 34555677777777777777654432 233456666653 36777777777777654332 125667777
Q ss_pred HHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 78 TACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
..-..+++|..|+..|++.....-++.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 777778888888888887776655554
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.02 Score=49.60 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=65.7
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCH---HHHHHHHHHHHHhh
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMS---KAYWRKATACMKLE 84 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~~~---~a~~~~g~~~~~lg 84 (262)
+..++..|++-+|....++.|+..|.+..++..--.+++.+|+...-...+++.+-. +++.+ ..+-.++-++..+|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445677888888888899999988988666655556666677777766666666655 55543 22333444566677
Q ss_pred cHHHHHHHHHHhhccCCCCH
Q 024778 85 EYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~ 104 (262)
-|++|.+...+++++++.|-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDC 209 (491)
T ss_pred cchhHHHHHHhhccCCCcch
Confidence 77777777777777777654
No 274
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.73 E-value=0.018 Score=57.27 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW 74 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~ 74 (262)
...|..++..|++.+|..++.+++...+.. ..++..+|.++...|++++|...+.+++..... ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 345677889999999999999999864442 245677899999999999999999999876432 124667
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 75 RKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+|.++...|++++|...+++++.+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998875
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.72 E-value=0.015 Score=40.95 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 22 i~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
+..+.+++..+|++..+.+.+|.++...|++++|++.+-.++..+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34455555555555555555555555555555555555555555543
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.72 E-value=0.015 Score=57.81 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------CH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS 70 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--------~~ 70 (262)
+...|..+...|++++|...+.+++...... ..++.++|.+++..|++++|...+++++.+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4567778889999999999999999763321 356778899999999999999999999886321 12
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
..+..+|.+++..|++++|...+.+++.+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 345678999999999999999999988753
No 277
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.71 E-value=0.046 Score=55.26 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=36.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhcHH
Q 024778 11 EAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
.|.+.|++++|.++|.+..+.+ +.+...|..+..+|.+.|++++|+..|...... .| +...|..+..+|...|+++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHH
Confidence 3444444444444444444432 223334444444444444444444444444333 12 1223333444444444444
Q ss_pred HHHHHHHHhhc
Q 024778 88 TAKVALEKGAS 98 (262)
Q Consensus 88 ~A~~~~~~a~~ 98 (262)
+|...|....+
T Consensus 667 eA~~l~~eM~k 677 (1060)
T PLN03218 667 KAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.71 E-value=0.026 Score=39.71 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHh
Q 024778 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAEE 120 (262)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~~ 120 (262)
.+..++..+..+|++..+.+.+|..+...|++++|++.|..++..+++. ..++..+-.+-..++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4567889999999999999999999999999999999999999998764 56777777777776653
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.70 E-value=0.0026 Score=36.50 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 73 YWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
+.++|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 280
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.69 E-value=0.0059 Score=42.29 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=44.1
Q ss_pred CCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC----CC----Ceeeecccccccccc
Q 024778 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 180 q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~----~~----~~~~~~~~L~~~i~~ 232 (262)
.+++.++|.+-+.|+.|++++|++.++.|+|+-.-. ++ .+|..++.|...|++
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~ 64 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDP 64 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcCh
Confidence 467889999999999999999999999999986321 11 248888999999998
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.66 E-value=0.0041 Score=35.65 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
++.++|.+|..+|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888888888888886544
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.068 Score=44.45 Aligned_cols=101 Identities=22% Similarity=0.169 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCCHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSK 71 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-----p~~~~ 71 (262)
..+...+..+...++|++|-.++.+|.+-..++ +.++-..|.....+..+.++...+++|..+. |+-..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 456667777888999999999999999776554 3455666777777889999999999998874 33222
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.-+.++--....-+.++|+..|++++.+--.+
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 23333434445667899999999998865443
No 283
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.65 E-value=0.0036 Score=33.45 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
++..+|.++..+++++.|+..++.++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665553
No 284
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.64 E-value=0.033 Score=45.79 Aligned_cols=90 Identities=19% Similarity=0.072 Sum_probs=67.6
Q ss_pred HhhCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHcCCC------CHHHH
Q 024778 14 IDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNFT-------EAVADANRAIELEPS------MSKAY 73 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~----~-p~~--~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~l~p~------~~~a~ 73 (262)
....+++|++.|.-||-. . +.. +.++..+|.+|..+++.+ .|+..|.+++..... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 455788999988888764 1 222 678888999999888854 466666666654422 24688
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 74 WRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
|.+|.+..++|++++|...|.+.+...-..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999865433
No 285
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.55 E-value=0.081 Score=53.56 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATAC 80 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~ 80 (262)
......+.+.|++++|.+.|.+.... .|+ ...|..+..+|.+.|++++|++.|+.....+ +.+...|..+..+|
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 33445556666677777766666542 233 4555566666777777777777777766665 33456666677777
Q ss_pred HHhhcHHHHHHHHHHhhcc
Q 024778 81 MKLEEYETAKVALEKGASL 99 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l 99 (262)
...|++++|...|......
T Consensus 625 ~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHc
Confidence 7777777777777776654
No 286
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.53 E-value=0.0081 Score=41.51 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=42.5
Q ss_pred CeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCC--------Ceeeecccccccccc
Q 024778 183 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKVYM 232 (262)
Q Consensus 183 ~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~i~~ 232 (262)
+.+.|.+.+.|+.+++++|.+.++.|+|+-.-... ..|...+.|...|++
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~ 64 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDP 64 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCCh
Confidence 57899999999999999999999999998643221 368899999999999
No 287
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.52 E-value=0.021 Score=55.31 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CC-------------
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EP------------- 67 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p------------- 67 (262)
......|.+.|++++|+++|++.+.. .|+ ...+..+-.++.+.|..++|...|+...+. .|
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 34445555666666666666655443 232 333334444444455555555555444332 11
Q ss_pred ------------------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 68 ------------------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 68 ------------------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.+...|..+..++...|+++.|...+++.+.+.|++......+..+
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 1233455555555566666666666666666666554333333333
No 288
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.52 E-value=0.098 Score=46.52 Aligned_cols=101 Identities=17% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHH---hhCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCC---
Q 024778 5 LEKKAKEAFI---DDYFELAYDLYSQAI-EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS--- 68 (262)
Q Consensus 5 l~~~g~~~~~---~~~~~~Ai~~~~~al-~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~l~p~--- 68 (262)
.+..|.++.+ .|+.++|+..+..++ ...+.+++.++-.|.+|-.+ ..++.|+..|.++++++++
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 3466777777 899999999999854 44677889999999988654 3477899999999998864
Q ss_pred ------------------------------------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 69 ------------------------------------------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 69 ------------------------------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+...+-.++.+....|+++.|..++++++.+.|..=.
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1122334556666778899999999999988875433
No 289
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.052 Score=49.38 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-HHHHHHHHHHhhc
Q 024778 20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGAS 98 (262)
Q Consensus 20 ~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~-~~~A~~~~~~a~~ 98 (262)
.-+.+|..|+...+.|..+|.+...--.+.+.+.+-...|..++..+|+++..|...|.-.+..+. .+.|.+.|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345679999999999999998877666666779999999999999999999999999998888777 9999999999999
Q ss_pred cCCCCHHHHH
Q 024778 99 LAPGDSRFTN 108 (262)
Q Consensus 99 l~p~~~~~~~ 108 (262)
++|+.+.++.
T Consensus 169 ~npdsp~Lw~ 178 (568)
T KOG2396|consen 169 FNPDSPKLWK 178 (568)
T ss_pred cCCCChHHHH
Confidence 9999987654
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.49 E-value=0.0057 Score=50.18 Aligned_cols=61 Identities=26% Similarity=0.274 Sum_probs=56.4
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 70 (262)
......+|.+.|.++|.+||.+.|....-|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999999999999999999999999999999999999999764
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.44 E-value=0.043 Score=42.09 Aligned_cols=85 Identities=15% Similarity=-0.086 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+.+.........+..++..++...--+.|+.+.+-..-|..++..|+|.+|+..++....-.+..+.+--.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45666667777999999999998888889999999999999999999999999999999988888888888899999999
Q ss_pred hcHHH
Q 024778 84 EEYET 88 (262)
Q Consensus 84 g~~~~ 88 (262)
|+.+-
T Consensus 92 ~Dp~W 96 (153)
T TIGR02561 92 GDAEW 96 (153)
T ss_pred CChHH
Confidence 98644
No 292
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.42 E-value=0.0053 Score=50.34 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=55.7
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 45 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
...+.++.+.|.+.|.+++.+.|.....|||+|......|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344678999999999999999999999999999999999999999999999999999874
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.42 E-value=0.067 Score=42.63 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CH----HHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--MS----KAY 73 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~----~a~ 73 (262)
..+..+|..+++.||++.|++.|.++....-.. .++++++-.+.+..+++......+.++-.+-.. +. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 357788999999999999999999987764332 466777777888889999999988888765432 22 223
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 74 WRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
...|..+...++|..|...|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 3467777788999999888876654
No 294
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.39 E-value=0.046 Score=55.19 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=88.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhh
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLE 84 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~lg 84 (262)
.+...|-..+.+++|.++|+..++...+....|...|..+++..+-+.|...+.+|+..-|. +.+..-..|+..|..|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 34455667888999999999999988877888999999999999889999999999999987 6677788899999999
Q ss_pred cHHHHHHHHHHhhccCCCCHHHHHHH
Q 024778 85 EYETAKVALEKGASLAPGDSRFTNLI 110 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (262)
+-+.+...|+-.+.-+|.-.++|...
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHH
Confidence 99999999999999888866655443
No 295
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.35 E-value=0.098 Score=50.62 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
..-.|..+++.|.+++|..+++..-...+++-..+-.+-.||..++++++|...|++++..+|. -+-.+.+-.+|.+-+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3456788899999999998887777777888888889999999999999999999999999999 788888889999988
Q ss_pred cHHHHHHHHHHhhccCCCCHH
Q 024778 85 EYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.|.+=.+.--+..+..|+++-
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccc
Confidence 887655555555556676653
No 296
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.095 Score=44.10 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=77.2
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHH-HH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL 93 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~-~~ 93 (262)
.+.+.+|.-.|++.-...+..+..+...+.|++.+++|++|...++.++..+++++.++.++-.+-..+|.-.++.. .+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45688899999998887777799999999999999999999999999999999999999999999999998877664 45
Q ss_pred HHhhccCCCCH
Q 024778 94 EKGASLAPGDS 104 (262)
Q Consensus 94 ~~a~~l~p~~~ 104 (262)
.+.....|..+
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 55555667665
No 297
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.29 E-value=0.047 Score=54.14 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=87.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
..++++..+.|++|+..|.++-.-.|.. .++.+..|.+++.. + .+++|+.-|++. .-.|.-+--|+..|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3567889999999999999998888765 47788888887654 2 466677666543 34556667799999
Q ss_pred HHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
.+|.++|+|++-+++|.-+++..|..|.+.+....+..++-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999987776665555554
No 298
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.28 E-value=0.18 Score=45.58 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCCHHH------------------------------------------
Q 024778 2 ATDLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAEL------------------------------------------ 38 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~------------------------------------------ 38 (262)
++.+..-|..+.+.|. =++|++++..+++..+.+..+
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 3455666777777777 567888888888877766211
Q ss_pred ------HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC-CCHHHHHHHH
Q 024778 39 ------FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP-GDSRFTNLIK 111 (262)
Q Consensus 39 ------~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p-~~~~~~~~l~ 111 (262)
...=|.-++..|+|.++.-...=..+++| .+.++..+|.|++...+|.+|-.++...-.-+. .|......+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~ 537 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALA 537 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 11122233456888888887777788888 889999999999999999999888875433110 1223445666
Q ss_pred HHHHHHHH
Q 024778 112 ECEERIAE 119 (262)
Q Consensus 112 ~~~~~l~~ 119 (262)
.|++.+.+
T Consensus 538 lCqKh~~k 545 (549)
T PF07079_consen 538 LCQKHLPK 545 (549)
T ss_pred HHHHhhhh
Confidence 66666543
No 299
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.23 E-value=0.016 Score=40.17 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=42.8
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC----C-C---Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----G-E---EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~----~-~---~~~~~~~~L~~~i~~ 232 (262)
.++...|.+.++|++||+++|++.++.|+|+-... + | .+|..++.|...|++
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~ 64 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDP 64 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCCh
Confidence 46778899999999999999999999999976321 1 1 258888899999998
No 300
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.0078 Score=54.42 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI---------S---------PNSAELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~---------~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
+.+.|..+|+.+.|..++.+|.+||+. . ...-.++++.|..|+..|+.-.|.++|.+++...
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 356788899999999999999999961 1 1235789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 024778 67 PSMSKAYWRKATACMKL 83 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~l 83 (262)
..++..|+|+|.|+..-
T Consensus 366 h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 99999999999998753
No 301
>PLN03077 Protein ECB2; Provisional
Probab=96.13 E-value=0.063 Score=53.32 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATAC 80 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~ 80 (262)
|......+.+.|+.++|+++|++..+. .|+... +..+-.++.+.|.+++|...|+....... .+...|..+..++
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 445556667777777777777776653 344333 33344456666777777777766653221 1335566666666
Q ss_pred HHhhcHHHHHHHHHHh
Q 024778 81 MKLEEYETAKVALEKG 96 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a 96 (262)
.+.|++++|...++..
T Consensus 636 ~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 636 GRAGKLTEAYNFINKM 651 (857)
T ss_pred HhCCCHHHHHHHHHHC
Confidence 6666666666666554
No 302
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.07 E-value=0.069 Score=36.28 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---ADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+....+.|..+|...+.++|+..+.++|...++....+ -.+..+|...|+|.+++++...=+.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999887765544 4455667778888888877654443
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.058 Score=46.86 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=41.4
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-C---HHHHHHHHHHHHHhhcHHH
Q 024778 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-M---SKAYWRKATACMKLEEYET 88 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-~---~~a~~~~g~~~~~lg~~~~ 88 (262)
..-|-|.+|.+.-++++.+++.+.++....+.++...+++.++.+.-.+.-..=.. . ..-|...|.++...++|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 34455555555555555555555555555555555555555555543322111000 0 1123344555555555666
Q ss_pred HHHHHHHh
Q 024778 89 AKVALEKG 96 (262)
Q Consensus 89 A~~~~~~a 96 (262)
|++.|.+-
T Consensus 266 aleIyD~e 273 (491)
T KOG2610|consen 266 ALEIYDRE 273 (491)
T ss_pred HHHHHHHH
Confidence 66655443
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.051 Score=45.85 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
.+..++=..|...++++.|+.+..+.+.++|.++.-+.-+|.+|.++|++.-|+..++..+++-|+++...
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 44555566777789999999999999999999999999999999999999999999999999999987643
No 305
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.95 E-value=0.018 Score=40.26 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC----C--C------Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----G--E------EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~----~--~------~~~~~~~~L~~~i~~ 232 (262)
..+.+.|.+.++|+.|+++.|++.++.|.|+-.-. + + ..|..++.|...|++
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~ 68 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDP 68 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcCh
Confidence 46778999999999999999999999999986321 1 1 358888899999998
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.95 E-value=0.18 Score=46.09 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
.+...+|.|..++|+.++|++.++..++..|. +...+.++-.++..++.|.++...+.+.-.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455667777777777777777777766654 345677777777777777777776666543
No 307
>PLN03077 Protein ECB2; Provisional
Probab=95.94 E-value=0.088 Score=52.31 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=77.9
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
.-..+.+.|++++|..+|+...+..+ -+...|..+..+|.+.|++++|...++.. .+.|+ ...|-.+-.++...|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence 33567788888889988888774432 23567778888888888888888887764 34443 4455555556777788
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.+.|....++.++++|++......+..++...++
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 8888888888888888887776666665544443
No 308
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=95.86 E-value=0.021 Score=39.84 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=42.7
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecC-----CC------Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----GE------EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~L~~~i~~ 232 (262)
.++.++|++.++|+.|++++|++.++.|+|+-... .+ ..|...+.|...|++
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~ 68 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDE 68 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcCh
Confidence 45779999999999999999999999999987421 11 247788899999998
No 309
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.84 E-value=0.13 Score=38.90 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHh---hCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 4 DLEKKAKEAFID---DYFELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 4 ~l~~~g~~~~~~---~~~~~Ai~~~~~al~-~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
..++.+-++.+. .|-++.|.++...++ ..|.. -++.+.+|..++++++|+.++.+++..++..|++.++.-..-.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 346666666654 466789999999997 44543 5788899999999999999999999999999999887654433
No 310
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.1 Score=44.13 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
+.=..+.+.++++.|..+-.+.+.++|.++.-+.-+|.+|.++|.+..|+.+++..+..-|+.+.+-..++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3345678899999999999999999999999999999999999999999999999999999988776655543
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.25 Score=41.55 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=86.0
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH-HHH
Q 024778 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAK 90 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~-~A~ 90 (262)
.+...-..|+.+-..+|+++|.+...|..|-.|+..++ +..+-+.+++..++-+|.+.+.|..+-.+...+|+.. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34556678999999999999999999988888888775 6788899999999999999999999999999999988 788
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 91 VALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.+...++..+..+-.++.....+..
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r 158 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLR 158 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHH
Confidence 8889999888877665554444433
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.56 E-value=0.26 Score=38.43 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
..++....+-...++.+++...+.-.--+.|.....-+.-|..+...|+|.+|+..|+....-.|..+..+..+..|...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45566667777788999999999888889999999999999999999999999999999999999999888888888777
Q ss_pred HHH
Q 024778 117 IAE 119 (262)
Q Consensus 117 l~~ 119 (262)
++.
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 663
No 313
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.55 E-value=0.085 Score=46.34 Aligned_cols=95 Identities=16% Similarity=-0.008 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIKLQNFTEAVADANRAIELEP------ 67 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------ 67 (262)
.+...|..+-..+||++|+-+..+|+++...- ...++.++.++..+|.+..|.++++.+.++.-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 34567788888999999999999998874321 45677889999999999999999999887642
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 68 SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
-......-+|.+|...|+.+.|..-|+.+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2345677789999999999988888887764
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.54 E-value=0.42 Score=41.82 Aligned_cols=118 Identities=18% Similarity=0.145 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--C-C-------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIEL--E-P------- 67 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~-p------- 67 (262)
+..+...+..+.+.|.++.|...+.++....+. .+...+..+..+...|+..+|+..++..+.. . .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 356788899999999999999999999886521 4677888999999999999999998888771 1 0
Q ss_pred ------------------------CCHHHHHHHHHHHHHh------hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 68 ------------------------~~~~a~~~~g~~~~~l------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
...++++.+|.-...+ +.++++...|..+..++|.....+..++.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0135777788877777 8889999999999999998777666555555544
Q ss_pred HH
Q 024778 118 AE 119 (262)
Q Consensus 118 ~~ 119 (262)
-.
T Consensus 306 ~~ 307 (352)
T PF02259_consen 306 LE 307 (352)
T ss_pred HH
Confidence 33
No 315
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=95.49 E-value=0.045 Score=37.85 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=43.7
Q ss_pred CCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec----CCC----Ceeeecccccccccc
Q 024778 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV----PGE----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 180 q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~----~~~----~~~~~~~~L~~~i~~ 232 (262)
.+++...|.+-+.|+.||+++|++.++.|+|+-.- .++ ..|..++.|...|++
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~ 64 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEH 64 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcch
Confidence 46788999999999999999999999999998632 111 257788889999998
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.2 Score=41.83 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSKAY 73 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~a~ 73 (262)
.+++-.+....+.++|+.+|++++.+...+ .+.+-..+..+.++..|.+|-..+.+-..+ .++..+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 344555666677777777777777664332 345556666677777777765555433222 23334455
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 74 WRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
...-+++....+|..|..+++.+...
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 55555556666787887777776554
No 317
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.34 E-value=0.0036 Score=54.09 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=59.2
Q ss_pred HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 48 KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
-.|.++.|+.+|..++.++|.....|-.++.++..++....|+..|..+++++|+...-..+...++..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999998654334443333333
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.27 E-value=0.11 Score=48.42 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+.+.|+.+++.+-...|-.++.++|.+....+..++.+|..|+.+++.+.|++.++.|+.++|+++...--+-
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 4678899999999999999999999999888999999999999999999999999999999999887654433
No 319
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.23 E-value=0.11 Score=45.57 Aligned_cols=49 Identities=33% Similarity=0.432 Sum_probs=43.8
Q ss_pred CCCeEEEEEEecCC-CCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 232 (262)
..+.++|.|.+.|+ +..++.++++++.|.|.++.+ .|.+.+.|.++|++
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~ 308 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDE 308 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccC
Confidence 37889999999999 789999999999999987432 79999999999999
No 320
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.22 E-value=0.15 Score=35.98 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 11 EAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
..++.|||.+|++.+.+.++..... ..++.++|.++...|++++|+..++.++.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456666666666655555542111 2344555555555555666555555555543
No 321
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.18 E-value=0.38 Score=49.05 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
..|...|..+++..+-+.|...+.+||..-|. +..+....|+.-++.|+-+++...|+-.+.-+|.....|.-+...-
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 35778889999999999999999999999988 6788999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCC--CC--HHHHHHHHH
Q 024778 81 MKLEEYETAKVALEKGASLAP--GD--SRFTNLIKE 112 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p--~~--~~~~~~l~~ 112 (262)
...|+.+.+...|++++.+.= .. .-+.+||..
T Consensus 1645 ik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1645 IKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 999999999999999998753 32 224566654
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.13 E-value=0.055 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
++.++|.+|..+|++++|+..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344555555555555555555555544
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.10 E-value=0.33 Score=43.21 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=65.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------CCC---------------CHHHHHHHH
Q 024778 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EPS---------------MSKAYWRKA 77 (262)
Q Consensus 27 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------------~p~---------------~~~a~~~~g 77 (262)
..|..+|-..+.+..++.++..+|++..|.+.+++|+-. +.. ...+.++..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 334568888999999999999999999999888888632 111 235788899
Q ss_pred HHHHHhhcHHHHHHHHHHhhccCCC-CHH
Q 024778 78 TACMKLEEYETAKVALEKGASLAPG-DSR 105 (262)
Q Consensus 78 ~~~~~lg~~~~A~~~~~~a~~l~p~-~~~ 105 (262)
..+.+.|.+..|.++++-.+.++|. |+-
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999999998 663
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.96 E-value=1.3 Score=37.96 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHhh-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHccCHH---HHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFT---EAVADANRAI 63 (262)
Q Consensus 2 a~~l~~~g~~~~~~~-~~~~Ai~~~~~al~~----~p~~----------~~~~~~~a~~~~~~~~~~---~A~~~~~~al 63 (262)
++.+++.|..++..+ +|+.|+..+++|+++ ...+ ...+..++.+|+..+.++ +|....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 567899999999999 999999999999998 2211 355677888888877665 4444555555
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
...|+.+..++..-.++...++.+++.+.+.+.+.--+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 55677676665555555557888888888888776543
No 325
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.95 E-value=0.65 Score=41.40 Aligned_cols=96 Identities=11% Similarity=-0.042 Sum_probs=76.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HcCCCCHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKAT 78 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al-~l~p~~~~a~~~~g~ 78 (262)
+.-..|...++|+.-+.+.+..-.+ .++.......+|.++-+ .|+.++|+..+..++ ...+.+++.+..+|.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344567788999888888876655 44556777888999988 899999999998844 456677889999999
Q ss_pred HHHHhh---------cHHHHHHHHHHhhccCCC
Q 024778 79 ACMKLE---------EYETAKVALEKGASLAPG 102 (262)
Q Consensus 79 ~~~~lg---------~~~~A~~~~~~a~~l~p~ 102 (262)
+|..+- ..+.|+..|.++.+++|+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 988752 468899999999999875
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.93 E-value=0.42 Score=43.63 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=77.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
-...+..||...|-+....+|+..|.++.....++.++..+|.|+.+++++..+-..-..-..+...+-..++.+|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34567899999999999999999999999999999999999999999998876655444444555666677888999999
Q ss_pred HHHHHHHhhccCCCCHH
Q 024778 89 AKVALEKGASLAPGDSR 105 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~ 105 (262)
|.......+.-.-.+++
T Consensus 376 a~s~a~~~l~~eie~~e 392 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEE 392 (831)
T ss_pred HHHHHHHHhccccCChh
Confidence 98777766654444444
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.89 E-value=0.25 Score=47.78 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPN----------SAELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~a----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
-+++.|..+-..+|.+.|+++|.++ |..+|. +..+|.--|+-+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677777888889999999998764 333443 34556666777778899999999998775
Q ss_pred HcC---------------------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 64 ELE---------------------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 64 ~l~---------------------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
... ..+..|-|.+|..|.+.|++.+|+.+|.++..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 432 235678899999999999999999999988754
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.79 E-value=0.65 Score=40.58 Aligned_cols=99 Identities=25% Similarity=0.125 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CC-C-------------------------C-------HHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SP-N-------------------------S-------AELFADRAQASIKL 49 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~-~p-~-------------------------~-------~~~~~~~a~~~~~~ 49 (262)
..++.+..+...|+..+|+..+...+.. .. . . +.++..+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 4567788899999999999999888871 11 0 1 34455555555556
Q ss_pred ------cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcH-----------------HHHHHHHHHhhccCCC
Q 024778 50 ------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG 102 (262)
Q Consensus 50 ------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~-----------------~~A~~~~~~a~~l~p~ 102 (262)
+.+++++..|..++.++|...++|+.+|..+..+=+. ..|+.+|-+++.+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7778899999999999999999999999988775322 3377888888888776
No 329
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.55 Score=43.71 Aligned_cols=99 Identities=19% Similarity=0.047 Sum_probs=80.3
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-HHHHcCCCCHHHHHHH------HHHHHHh
Q 024778 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN-RAIELEPSMSKAYWRK------ATACMKL 83 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~l~p~~~~a~~~~------g~~~~~l 83 (262)
.....++...+......++..+|+++.++.++|.+....|....++..+. .+....|.+.+....+ |..+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (620)
T COG3914 76 LLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL 155 (620)
T ss_pred hccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHh
Confidence 33455677788888999999999999999999999998887766666555 4888999887766655 8888888
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
|+-.++...+++++.+.|.++.....
T Consensus 156 ~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 156 GRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred ccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 89999999999999999988665443
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.53 E-value=0.092 Score=30.37 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS 32 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~ 32 (262)
+..+.+.|..+...|+|++|+.++.+++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5678899999999999999999999999863
No 331
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.53 E-value=1.5 Score=41.54 Aligned_cols=99 Identities=23% Similarity=0.210 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------------SAELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
|..|++-|..-++.++++.|+.+...|...--. +..+|...+......|-++.....|++.+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445666666667777777777777766654111 12344555555555566666666666666
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.+---.++.-.+.|.-+.....|++|.+.|++++.+-
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 6655555555666666666666666666666666654
No 332
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.19 E-value=0.25 Score=41.86 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
|..+|.+|+.+.|.++..|..+|.++...|+.-+|+-+|-+++...-..+.+...+..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665443345555555554444
No 333
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.12 E-value=0.25 Score=34.85 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=45.9
Q ss_pred HHHccCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 46 SIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 46 ~~~~~~~~~A~~~~~~al~l~p~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
..+.++|..|++.+.+.+..... ...+.+.+|.++...|++++|+..++.++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34789999999888888765321 246788999999999999999999999998754
No 334
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=94.01 E-value=0.13 Score=46.02 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=54.7
Q ss_pred cccccCCCCeEEEEEEecCC-CCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---------ce---EEEeecC
Q 024778 175 RHEFYQKPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---------AY---ILLFLKG 241 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---------~~---i~l~K~~ 241 (262)
.|-|-|+++.|.|++.+... +++++.|.+..++|.+.+ +..-.++-.|+..|+- .+ +.|.|++
T Consensus 291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~----~dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d 366 (596)
T KOG4379|consen 291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKH----LDHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD 366 (596)
T ss_pred cceeeeccCcceEEEecccccccceEEEEecCceEEEEe----eeeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence 48999999999999987655 689999999999888776 3344444555555554 22 8999995
Q ss_pred C-CCCCCccCC
Q 024778 242 L-IHHPFLDHQ 251 (262)
Q Consensus 242 ~-~~W~~l~~~ 251 (262)
. ..|+.|-..
T Consensus 367 e~~twprL~~~ 377 (596)
T KOG4379|consen 367 EIQTWPRLFAQ 377 (596)
T ss_pred cccccchheee
Confidence 5 599998543
No 335
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.00 E-value=2.5 Score=36.03 Aligned_cols=104 Identities=14% Similarity=-0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHcCCCCHH
Q 024778 4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 4 ~l~~~g~~~~~----~~~~~~Ai~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~l~p~~~~ 71 (262)
..+..|..+.. ..|+.+|..+|.+|....... ..+.+.+|.+|..-. +...|+..|.++-... +..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 55667777765 559999999999999886444 345777888876531 3347888888887776 778
Q ss_pred HHHHHHHHHHH----hhcHHHHHHHHHHhhccCCCCHHHHHHHH
Q 024778 72 AYWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIK 111 (262)
Q Consensus 72 a~~~~g~~~~~----lg~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (262)
+.+++|.+|.. ..++.+|...|.++.+... .....++.
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 89999988765 3478999999999999876 44444444
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.98 E-value=0.87 Score=37.46 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=46.0
Q ss_pred hCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-HHHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKAT 78 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~ 78 (262)
.-+..|++.|.+++..... ...+++.+|.++.++|++++|+.++.+++....... ..+..+|.
T Consensus 139 ~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 139 RFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 3356777778888776432 257788899999999999999999999997654433 34444444
No 337
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.90 E-value=0.18 Score=43.49 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=69.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 25 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
|.++-...++++..|...+.-..+.|.|.+--..|..++..+|.+...|.. .+--++..++++.+.+.|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344444567888888888877778889999999999999999999887766 5566778899999999999999999999
Q ss_pred HHHHH
Q 024778 104 SRFTN 108 (262)
Q Consensus 104 ~~~~~ 108 (262)
+.++.
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 87653
No 338
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.70 E-value=0.51 Score=42.76 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 61 (262)
.....|..+|..|+|.++.-+-.-..+++| ++.++.-+|.|++..++|.+|..++..
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345667889999999999999999999999 799999999999999999999988753
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=2.1 Score=34.53 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
.+...+|..+...+++++|+..++.++..-.+. .-+-+|+|.++..+|.+++|+..+....
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 345668888888999999999999988554332 2467899999999999999999887544
No 340
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.53 E-value=2.3 Score=37.18 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHH
Q 024778 23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 23 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
..|++.++.+|+|..+|..+....-.+-. .+..+..|++|++.+|++...+..+-.+.....+-+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45777788888888877777655544422 345667788888888877776666666666777777777
Q ss_pred HHHHHhhccCCCCHHHH
Q 024778 91 VALEKGASLAPGDSRFT 107 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~ 107 (262)
.-+++++..+|++..++
T Consensus 86 ~~we~~l~~~~~~~~LW 102 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELW 102 (321)
T ss_pred HHHHHHHHHCCCChHHH
Confidence 77888888887765533
No 341
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.48 E-value=0.34 Score=37.07 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
.+....++...+..|+|.-|...++.++..+|++..+...++.+|..+|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4555566666666777777777777777777777777777777777766543
No 342
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.43 E-value=1.9 Score=40.94 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHh
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKAYWRKATACMKL 83 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----~~~a~~~~g~~~~~l 83 (262)
++..-.-|-++..-..|++.|++.=..+..-.|.|..+....-++++.+.|++.+.+.+- ....|+.....-+..
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 333444556666666777777776666777777777777777777777777777777542 234555555555555
Q ss_pred hcHHHHHHHHHHhhccCC
Q 024778 84 EEYETAKVALEKGASLAP 101 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p 101 (262)
-..+.|...|++|++.-|
T Consensus 564 ~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCP 581 (835)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 566777777777777666
No 343
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.34 E-value=1.2 Score=39.68 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS--IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~--~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
...+...+-.|+|+.|-..|+..+. +|.- ..+-.||.-+ ..+|..+.|..+...+....|....++...-......
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 4467788899999999999987665 3442 2222333322 3579999999999999999999988888888888899
Q ss_pred hcHHHHHHHHHHhhc
Q 024778 84 EEYETAKVALEKGAS 98 (262)
Q Consensus 84 g~~~~A~~~~~~a~~ 98 (262)
|+|+.|+...+....
T Consensus 202 gdWd~AlkLvd~~~~ 216 (531)
T COG3898 202 GDWDGALKLVDAQRA 216 (531)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999998875543
No 344
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.31 E-value=1.9 Score=36.41 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 21 Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
|..+|.+|+.+.|.++..|..+|.++...|+.-.|+=+|-+++-.......|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999988887665566677777766666
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.31 E-value=0.14 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+|.++|.+-...++|..|+..|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677788888888888888888777764
No 346
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.29 E-value=0.15 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
+++..+|.+-+..++|..|+.+|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777788888888888888765
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.29 E-value=1.8 Score=40.97 Aligned_cols=92 Identities=16% Similarity=0.027 Sum_probs=72.4
Q ss_pred HHHHHHHHHHh----h-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCCHHHHHHH
Q 024778 5 LEKKAKEAFID----D-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRK 76 (262)
Q Consensus 5 l~~~g~~~~~~----~-~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (262)
....|..|++. . |+..|+.+|.++-+... +.+.+.+|.||..-. ++..|..+|..|.... +..+++++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHH
Confidence 44567777764 3 78999999999988754 566777888887654 6789999999887654 66789999
Q ss_pred HHHHHHh----hcHHHHHHHHHHhhccC
Q 024778 77 ATACMKL----EEYETAKVALEKGASLA 100 (262)
Q Consensus 77 g~~~~~l----g~~~~A~~~~~~a~~l~ 100 (262)
|.|+..- .+...|..+|.++.+.+
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 9988753 47889999999999887
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.18 E-value=0.29 Score=27.97 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHH--HHHhhccCCC
Q 024778 72 AYWRKATACMKLEEYETAKVA--LEKGASLAPG 102 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~--~~~a~~l~p~ 102 (262)
.++.+|..++..|++++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555443
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.15 E-value=1.4 Score=33.91 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=67.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+.....+-....+.+++...+...--+.|+.......-|..+...|+|.+|+..|+...+-.+..+..+..+..|...++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 44444455558889999888888888999999999999999999999999999999999888887877777777777665
Q ss_pred H
Q 024778 119 E 119 (262)
Q Consensus 119 ~ 119 (262)
.
T Consensus 93 D 93 (153)
T TIGR02561 93 D 93 (153)
T ss_pred C
Confidence 3
No 350
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.14 E-value=1.7 Score=37.26 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
..++..++..+...++++.++..+++.+.++|-+-.+|.++-.+|+..|+...|+..|.+.-.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999999999999999999999999888764
No 351
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.11 E-value=0.41 Score=43.08 Aligned_cols=98 Identities=22% Similarity=0.181 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHccCHH----------HHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAI-----------EISPNSAELFADRAQASIKLQNFT----------EAVADA 59 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al-----------~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~ 59 (262)
|+--+.+.|..+++.+.|.+|+.++-.|- +...+.+.+-..+-.||+.+++.. .|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 56678899999999999999998765543 344455666677888898886542 333333
Q ss_pred HHHHH--------c-CCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 60 NRAIE--------L-EPSM------SKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 60 ~~al~--------l-~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
.++.. + .+.. ...++.-|.+.|+.|+-++|.++|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33321 1 1222 23556679999999999999999987763
No 352
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=1.8 Score=38.75 Aligned_cols=104 Identities=10% Similarity=0.039 Sum_probs=80.0
Q ss_pred HhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhhc---HH
Q 024778 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYW-RKATACMKLEE---YE 87 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~-~~g~~~~~lg~---~~ 87 (262)
+..-.++-+.+...+|+.+|++..+|..|..++.+.+ ++..-++.+.++++.||.+..+|. |+-++-..... ..
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3445677788899999999999999999999998875 478899999999999999887654 44444444444 56
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 88 TAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+-+++..+++.-++.|-.++.....+...+
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 677888888888888877776655554433
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.81 E-value=2.1 Score=40.47 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=72.7
Q ss_pred hhCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHc----c-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 15 DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKL----Q-NFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~-------~~p~~~~~~~~~a~~~~~~----~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.+|.+.|+.+|..+.. .. .+.+.+.+|.+|.+- . ++..|+..+.++-.++. +.+.+++|.++..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHc
Confidence 4699999999999987 22 455778899999884 3 78889999998887764 4578999999887
Q ss_pred hh---cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 83 LE---EYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 83 lg---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
-. ++..|..+|..|.... +..+..++..|...
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred CCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 65 6789999998887653 33455566655443
No 354
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=92.42 E-value=0.4 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=42.2
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----C----Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----~----~~~~~~~~L~~~i~~ 232 (262)
++++-.|++-++|..+|+++|.+.++.|.|+-.-.. + ..|...+.|...|++
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~ 72 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDP 72 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCc
Confidence 566678999999999999999999999999853211 1 357888889999998
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.27 E-value=0.18 Score=26.34 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHH
Q 024778 72 AYWRKATACMKLEEYETAKVAL 93 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~ 93 (262)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555544
No 356
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.94 E-value=2.2 Score=38.07 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CCHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE-LFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-----~~~~a~~~~ 76 (262)
.++.....+.+.|-|..|++...-.+.++|. |+. +++.+-...++.++|+=-++.++....... ..+..-|.+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3556667788999999999999999999998 763 444455555567888777776665544211 133567889
Q ss_pred HHHHHHhhcH---------------HHHHHHHHHhhccCCC
Q 024778 77 ATACMKLEEY---------------ETAKVALEKGASLAPG 102 (262)
Q Consensus 77 g~~~~~lg~~---------------~~A~~~~~~a~~l~p~ 102 (262)
+.+++.+++- +.|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9999999998 8999999999988773
No 357
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.88 E-value=2 Score=31.28 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=52.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhhc-----------HHHHHHHHHHhhccCCCCHH
Q 024778 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 42 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~~~lg~-----------~~~A~~~~~~a~~l~p~~~~ 105 (262)
+|..++..|++-+|++..+..+....++. ..+..-|.+++.+.. .-.++++|.++..+.|....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 57788899999999999999999887655 567778888877654 45689999999999998743
No 358
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.73 E-value=4.2 Score=30.24 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc----
Q 024778 37 ELFADRAQASIK--LQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGAS---- 98 (262)
Q Consensus 37 ~~~~~~a~~~~~--~~~~~~A~~~~~~al~l~p~------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~---- 98 (262)
.+|..++..-.+ -|.|++|...+++|...... +.-+|-.++.++..+|+|++++....+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344455544443 37899999999999987533 345778899999999999998887777764
Q ss_pred ---cCCCCHHHHHHHHHHHHH
Q 024778 99 ---LAPGDSRFTNLIKECEER 116 (262)
Q Consensus 99 ---l~p~~~~~~~~l~~~~~~ 116 (262)
++. .+-+.|+.-+..+
T Consensus 88 RGEL~q--deGklWIaaVfsr 106 (144)
T PF12968_consen 88 RGELHQ--DEGKLWIAAVFSR 106 (144)
T ss_dssp H--TTS--THHHHHHHHHHHH
T ss_pred cccccc--ccchhHHHHHHHH
Confidence 333 3455666655443
No 359
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=2.7 Score=39.30 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=78.0
Q ss_pred HHhhCHHH-HHHHHHHHHHhCCCCHHHHHHH--HHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHH
Q 024778 13 FIDDYFEL-AYDLYSQAIEISPNSAELFADR--AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (262)
Q Consensus 13 ~~~~~~~~-Ai~~~~~al~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A 89 (262)
+..++... ++..+...+.+++.++.++... +..+..++....+.-.++.++..+|.+..++.++|.++...|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33344443 6777777777888888775444 66777778888999999999999999999999999999998888777
Q ss_pred HHHHHH-hhccCCCCHHHHHHHHHH
Q 024778 90 KVALEK-GASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 90 ~~~~~~-a~~l~p~~~~~~~~l~~~ 113 (262)
...+.. +....|++..+...+-.+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHH
Confidence 766655 888889888766655333
No 360
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.53 E-value=5.5 Score=34.01 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=69.4
Q ss_pred HHHhhCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc----CCC----------
Q 024778 12 AFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EPS---------- 68 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l----~p~---------- 68 (262)
+.+.||++.|..+|.++-... |+. +..+++.|...+..+ +++.|..++++++.+ ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 568899999999999987754 222 567888999999999 999999999999887 221
Q ss_pred CHHHHHHHHHHHHHhhcHHHH---HHHHHHhhccCCCCHHHH
Q 024778 69 MSKAYWRKATACMKLEEYETA---KVALEKGASLAPGDSRFT 107 (262)
Q Consensus 69 ~~~a~~~~g~~~~~lg~~~~A---~~~~~~a~~l~p~~~~~~ 107 (262)
....+..++.+|...+.++.. ...++.+..-.|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 134677788888887776544 444444444456655444
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.37 E-value=0.28 Score=25.65 Aligned_cols=24 Identities=17% Similarity=-0.090 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADAN 60 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~ 60 (262)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677777777777777776654
No 362
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=4.8 Score=37.02 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCC------
Q 024778 2 ATDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASI-KLQNFTEAVADANRAIELEPSM------ 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~--~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~p~~------ 69 (262)
+..+...|..+...+ +...+|.+++..+...|.+ +..+..+|.+++ ..++++.|..++++|..+....
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456677777777777 8889999999988887765 456667777665 4689999999999998775332
Q ss_pred -HHHHHHHHHHHHHhh-cHHHHHHHHHHhhccCCCCHH
Q 024778 70 -SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 70 -~~a~~~~g~~~~~lg-~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+++-.++.+|.... .+..|...+++++++..+.+.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 346667888888777 788899999999999888774
No 363
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.14 E-value=7.9 Score=34.80 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 51 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
+...|..+...++++.|+..-+-..-+.+++..|+..++-..++.+-+..|.
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 4556677777777788888777788889999999999999999988888875
No 364
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.13 E-value=1.1 Score=30.17 Aligned_cols=29 Identities=31% Similarity=0.192 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
|..+..+|..+=+.|+|.+|+.+|++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566666666667777766666665554
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.04 E-value=2.8 Score=38.56 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCCHH---HHHHHHHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSK---AYWRKATACM 81 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~---a~~~~g~~~~ 81 (262)
-...+-+.+.|.+--..|.++|..+|+++++|..-|.=.+..+. .+.|.+.+.++++.+|+.+. .||++-..+.
T Consensus 111 yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 111 YIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 33334455558999999999999999999999988877776664 89999999999999999875 4455444433
No 366
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=1.7 Score=41.07 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
.+-+-|.-+++..+|..+++.|...+.--|. ..+.+..++.||..+.+.+.|.++++.|-+.+|.++-.+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 3456788888999999999999999887664 356788899999999999999999999999999886433
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.95 E-value=0.93 Score=25.86 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=13.9
Q ss_pred HHHHHHHHHHccCHHHHHHH--HHHHHHcCC
Q 024778 39 FADRAQASIKLQNFTEAVAD--ANRAIELEP 67 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~--~~~al~l~p 67 (262)
++.+|..+...|++++|+.. +.-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44455555555555555555 224444443
No 368
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=7.6 Score=35.81 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----------H
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIELEPSM----------S 70 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----------~ 70 (262)
...-.|.....-+-|+.|...|..|++.-.. + +-+..++|..|+..++-+.-.+.++ .+.|.+ .
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEA 445 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHH
Confidence 3456788888889999999999999987533 3 3455678999988776654433333 234431 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.++|..|...+..+++.+|...+.+.++..
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 578889999999999999999999999876
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.34 E-value=0.69 Score=41.66 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
++.+.+++..+|+|..|++.++.. .++ +-+...+|..|-+|..+++|.+|+..|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777655432 121 1233456667777777777777777776554
No 370
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.30 E-value=0.84 Score=39.49 Aligned_cols=71 Identities=8% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
-|..-+....+.|.|.+--..|.+++..+|.|.++|.. -+.-|...++++.+...+.++++++|+.+..|+
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 35556667778889999999999999999999999876 444556678999999999999999998876443
No 371
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.26 E-value=0.72 Score=38.26 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=64.6
Q ss_pred HHHhhCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHccC-HHHHH-HHHHHHHH-c-CCCCH--HHH
Q 024778 12 AFIDDYFELAYDLYSQAIEIS---PNS---------AELFADRAQASIKLQN-FTEAV-ADANRAIE-L-EPSMS--KAY 73 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~---p~~---------~~~~~~~a~~~~~~~~-~~~A~-~~~~~al~-l-~p~~~--~a~ 73 (262)
++.-|+|+.|++...-||+.+ |++ ++-...-+......|+ ++-.+ ..+..... . -|+.. +.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 367899999999999999974 332 1222333333444443 11111 11222211 1 13333 344
Q ss_pred HHHHHHHH---------HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 74 ~~~g~~~~---------~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
-..|..+. ..++...|..+|++++.++|+.. .+..+.++..+++.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~lr~ 226 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhh
Confidence 45566552 44678899999999999998654 77778888888764
No 372
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=5 Score=37.60 Aligned_cols=94 Identities=16% Similarity=0.052 Sum_probs=71.4
Q ss_pred HhhCHHHHHHHHHHHHHhCC------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CC---------
Q 024778 14 IDDYFELAYDLYSQAIEISP------------NSAELFADRAQASIKLQNFTEAVADANRAIEL-----EP--------- 67 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~~p------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p--------- 67 (262)
....|++|...|.-|....+ -...-+..+|.++..+|+.+.|.....++|-. .|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 45678888888888777533 33677889999999999999888888777642 22
Q ss_pred -------C---CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC-CHHHH
Q 024778 68 -------S---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFT 107 (262)
Q Consensus 68 -------~---~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~-~~~~~ 107 (262)
. ...+.|+.-.-+.+.|++..|.++++..+.++|. ||-..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 1 1346667777778899999999999999999998 76433
No 373
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.57 E-value=4.8 Score=31.98 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
..++..+|.-|.+.|++++|++.|.++....-. ....++++-.+....++|.....++.++..+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478889999999999999999999998775433 24678888889999999999999999888764
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.52 E-value=16 Score=35.07 Aligned_cols=114 Identities=19% Similarity=0.112 Sum_probs=78.1
Q ss_pred hHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHH
Q 024778 3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK 71 (262)
Q Consensus 3 ~~l~~~g~~~~-~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~ 71 (262)
...++.|..++ .-.+++.|..++.+++.+...+ ..+.+-++.+|.+.+... |+..++++++.... .+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 45677787777 6789999999999998886432 233445677887777766 99999999887554 334
Q ss_pred HHHHHHHHHH--HhhcHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACM--KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERI 117 (262)
Q Consensus 72 a~~~~g~~~~--~lg~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~l 117 (262)
..|++-.+.. ..+++..|...++....+. .+++.+...+.-....+
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 4444443322 2369999999999998876 46666554444443333
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.46 E-value=2.6 Score=36.10 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
.+...+..+...++++.++..+++.+..+|.+-.+|..+-.+|++.|+...|+..|++.-.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999877664
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.39 E-value=1.6 Score=37.51 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
++...+..|...|.+.+|++..++++.++|-+...+..+-..+..+|+--+|...|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567777888999999999999999999999999999999999999888888887654
No 377
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=89.34 E-value=3.3 Score=36.31 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=67.7
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACMKLEEYETAKVA 92 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~~~lg~~~~A~~~ 92 (262)
.-||..-..+|+......|+ +..-.||+.+.-+..-...++...+-.... -..+...|-.+|..+.++|+..+|...
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 34666666667766666665 555667888877666666666666544433 123455677899999999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHH
Q 024778 93 LEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~ 112 (262)
|++++.+.++..+......+
T Consensus 388 ydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 388 YDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHhcCChHHHHHHHHH
Confidence 99999999877654433333
No 378
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.27 E-value=12 Score=31.93 Aligned_cols=81 Identities=17% Similarity=0.061 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--------
Q 024778 17 YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-------- 84 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg-------- 84 (262)
+...|+..|.++-... +..+.+.+|.+|.. ..++.+|+.+|.++-.... ..+++.++ +++..|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 3447899999988776 67888889988865 3589999999999999887 88899999 677666
Q ss_pred -------cHHHHHHHHHHhhccCCC
Q 024778 85 -------EYETAKVALEKGASLAPG 102 (262)
Q Consensus 85 -------~~~~A~~~~~~a~~l~p~ 102 (262)
+...|...+..+....+.
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 777788888877776654
No 379
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.19 E-value=5 Score=40.25 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-----HHHHHH
Q 024778 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-----YETAKV 91 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~-----~~~A~~ 91 (262)
.+.+|+..|++.. ..|..+.=|...|.+|..+|+|.+-++++..|++..|..+..-+.+-.+.+++.+ ...|..
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666633 2455566788999999999999999999999999999887654444444444432 345667
Q ss_pred HHHHhhccCCCCHH
Q 024778 92 ALEKGASLAPGDSR 105 (262)
Q Consensus 92 ~~~~a~~l~p~~~~ 105 (262)
+.--++...|....
T Consensus 613 ~~~~~~~~~~~~~~ 626 (932)
T PRK13184 613 FMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHhCccccc
Confidence 77778888887543
No 380
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.4 Score=41.95 Aligned_cols=77 Identities=18% Similarity=0.031 Sum_probs=63.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
+.+...+..+++..|+.....+++.++....+++.++..+..+.++++|++++..+....|.+....-.+..+-...
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 34556677888889998888899988888999999999999999999999999999999998876554444433333
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.92 E-value=8 Score=33.82 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHhhcHHHHHHHHH
Q 024778 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC---MKLEEYETAKVALE 94 (262)
Q Consensus 18 ~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~---~~lg~~~~A~~~~~ 94 (262)
.+..+..|.+||+.+|++..++..+-.+..+..+-+...+-+++++..+|++...|..+-... +..-.+.+-...|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456788899999999999999988888888888888889999999999999876654332221 12224566666666
Q ss_pred Hhhc
Q 024778 95 KGAS 98 (262)
Q Consensus 95 ~a~~ 98 (262)
+|+.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 6664
No 382
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.91 E-value=13 Score=34.97 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=78.7
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhcHHH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
..-...|+++...-.|.+++--...-...|.+.+.-....|+..-|-..+.++.++. +..+..++..+......|++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 344678899999999999988877778889988888888888888888777777764 5566777788888888999999
Q ss_pred HHHHHHHhhccCCCCHHH
Q 024778 89 AKVALEKGASLAPGDSRF 106 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~~ 106 (262)
|...|+++..-.|+.-.+
T Consensus 385 A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 385 AKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHhhCCchhhh
Confidence 999999998877776543
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.41 E-value=2.7 Score=32.14 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
...+.++...+..|+|..|...+..++..+|+|..++..+..+..+++..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555666666666677777777766667776666666666666666654
No 384
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=5.2 Score=33.93 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=73.1
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
.+..+-++++++++..+|.|...|..|-.+...+|+.. .-+..+..++..+..+..+|..+-=++...+.|+.-+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 35667788899999999999999999988888889888 88889999999999998888888888888888888888887
Q ss_pred HhhccCC
Q 024778 95 KGASLAP 101 (262)
Q Consensus 95 ~a~~l~p 101 (262)
..++.+-
T Consensus 172 ~Lle~Di 178 (318)
T KOG0530|consen 172 ELLEEDI 178 (318)
T ss_pred HHHHHhh
Confidence 7776654
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.34 E-value=5.7 Score=32.84 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=56.4
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 70 (262)
-...+++.+...+||.....-++..|.+......+-..|+-.|+|++|...++.+-++.|.+.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678899999999999999999999998888888899999999999999999999999764
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.33 E-value=1.8 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 74 WRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 387
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.23 E-value=1.8 Score=40.06 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 42 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
-|.-.+..+....|+.+|.+++...|.....+.+++.++...+ +.-.|+..+..+++++|....+..++.++...++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 3333334466788999999999999999999999999988754 5566777788888999988888888888777776
Q ss_pred Hhhcc
Q 024778 119 EETGE 123 (262)
Q Consensus 119 ~~~~~ 123 (262)
....+
T Consensus 460 r~~ea 464 (758)
T KOG1310|consen 460 RYLEA 464 (758)
T ss_pred hHHHh
Confidence 65444
No 388
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.15 E-value=4.1 Score=33.65 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 45 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
-+++-+...+|+...+.-++..|.+......+-..|...|+|++|...++-+-++.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4567789999999999999999999988888899999999999999999999999998643
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.06 E-value=11 Score=33.96 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIEL 65 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~--~~~~~~a~~~~--~~~~~~~A~~~~~~al~l 65 (262)
....++..+|+.++|..|...|...+..-|.+. ..+..++.+|. ..-+|.+|...++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 446778899999999999999999998633333 35555555554 457888999888876653
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.03 E-value=2.8 Score=35.21 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
..+...+|.-|+..|+|++|+..++.+...... .......+..|...+|+.++.+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777788999999999999999999988665432 2356777888888999888877665443
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.99 E-value=1.7 Score=44.16 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL------- 65 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------- 65 (262)
|++.+..++..+.+.+++++|+..-.+|.-+ .|+....+.+++...+..++...|+..+.++..+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3567788899999999999999987766543 2445778889998888999999999998888775
Q ss_pred -CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 66 -EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 66 -~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.|.-.....+++.++..+++++.|+.+++.|...+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445566788989999999999999999998753
No 392
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.78 E-value=3 Score=37.62 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHH-------H-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAI-------E-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al-------~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
.....+.-.|||..|++.++-.- . .-+.....++..|-||+.+++|.+|++.|...+..--..-..+..+..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 34456677899999999865421 1 122335678899999999999999999999887432211111111111
Q ss_pred HH-HHhhcHHHHHHHHHHhhccCCC
Q 024778 79 AC-MKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 79 ~~-~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
-+ .-.+..+.....+--|+.+.|.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11 1234455566667777777775
No 393
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.29 E-value=3.7 Score=39.48 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
..++.+.|..+..+..|++|.++|...-. .-+...||+++..|++- +.....-|++...+-.+|.++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHH
Confidence 34677788888888888888888876422 22455566666555542 2222233333333333444444
Q ss_pred HhhcHHHHHHH
Q 024778 82 KLEEYETAKVA 92 (262)
Q Consensus 82 ~lg~~~~A~~~ 92 (262)
..|--++|.++
T Consensus 864 svGMC~qAV~a 874 (1189)
T KOG2041|consen 864 SVGMCDQAVEA 874 (1189)
T ss_pred hhchHHHHHHH
Confidence 44444444333
No 394
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=5 Score=34.48 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
...-+.-+.-....+++.+|...+..++...|.+..+.+.++.+|...|+.+.|...+...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3445567777888999999999999999999999999999999999999999998877644
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.19 E-value=2.3 Score=36.52 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 62 (262)
+...+..|...|.+.+|+++.++++.++|-+...+..+-..+..+|+--.|+.+|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4456677889999999999999999999999999999999999999988887777653
No 396
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.89 E-value=2.7 Score=38.64 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
.+...-..|+|+++...+..+-..-..-..+...+-....+++++++|+....-.+.-.-...+..---+.....+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 45566788999999998876665543333344445566778999999999888777665556666555566667788899
Q ss_pred HHHHHHHHhhccCCCC
Q 024778 88 TAKVALEKGASLAPGD 103 (262)
Q Consensus 88 ~A~~~~~~a~~l~p~~ 103 (262)
+|.-++++.+.++|..
T Consensus 409 ~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 409 KSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccCChh
Confidence 9999999999888753
No 397
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.44 E-value=5.9 Score=33.21 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHHHh
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE 120 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~~ 120 (262)
...+.+|.-|+.+|+|++|..+|+.+......+ ..+...+..|...+++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 456689999999999999999999997653322 23445666777766654
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.77 E-value=2.5 Score=22.36 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=20.9
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQ 44 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~ 44 (262)
|+++.+...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777888888887777777766544
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.66 E-value=9.1 Score=26.09 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHhhcHHHHHHHHHHhh
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW---RKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~---~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
-.+..|.-++...+...|+..+.+++...++....+. .+..+|...|+|.+.+.+..+-+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777889999999999999998877655444 45567788888888876654433
No 400
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=85.55 E-value=3.2 Score=32.84 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=46.1
Q ss_pred cccccCCCC-eEEEEEEecCCCCcc-eEEEEeeeEEEEEEecCCCCeeeecccccccccc----ce------EEEeecCC
Q 024778 175 RHEFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM----AY------ILLFLKGL 242 (262)
Q Consensus 175 ~~~~~q~~~-~v~v~i~~k~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~----~~------i~l~K~~~ 242 (262)
..+-.+.++ .++|.--+.||.+++ +.|++..+...+.|.. +..|.-.+.|..++.. +| |+|++.+.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~--~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV--GEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec--CCceEeeEecCCCccceeeEEEeCceEEEEEeecCC
Confidence 345555566 688888899998888 8888886655555544 4446677788877433 34 99998874
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.37 E-value=12 Score=33.01 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-------------------
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------------------- 67 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------------------- 67 (262)
+.-..+.+..+..+-|..-..||.++|..+.+|..+|.- ......+|...+++|++...
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 344566788888888999999999999998888776643 22334455555555554321
Q ss_pred ----CCHH--HHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 68 ----SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 68 ----~~~~--a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
.+.. .-.|++.|..++|+..+|.+.|+...+-.|
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222 235788899999999999999987776555
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.20 E-value=11 Score=34.05 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CCHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKA 72 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~a 72 (262)
.+.+.|.-|+.-|+++.|+++|.++-...-+ -..++.+.-.+-+.+++|..-.....+|...-. -....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4567788899999999999999995444322 245566666666678999887777777765410 01245
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 73 YWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
....|.+...+++|..|..+|-.+..
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56688889999999999998876553
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.80 E-value=17 Score=32.80 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CC--CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIEL--EP--SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
+.+.+.+-.+|+..+.|+.|-....++.-- +. ..+..+|.+|.+..-.++|.+|.++|-.|+...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 455666777888888899887766655411 11 2346778899999999999999999999999999754
No 404
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.80 E-value=5.2 Score=39.30 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~ 91 (262)
+...|..++|..+|.+.-+.+ + +-..|...|.+++|++.++.-=++. .-..||++|..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D-----L---lNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD-----L---LNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH-----H---HHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHH
Confidence 344445555555555443321 1 2223444555665555443211111 22579999999999999999999
Q ss_pred HHHHhhc
Q 024778 92 ALEKGAS 98 (262)
Q Consensus 92 ~~~~a~~ 98 (262)
+|+++-.
T Consensus 880 yyEK~~~ 886 (1416)
T KOG3617|consen 880 YYEKAGV 886 (1416)
T ss_pred HHHhcCC
Confidence 9987643
No 405
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.70 E-value=12 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
...++..++.+|.+|..+|+..+|-+.+.+|.+.
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3345555666666666666666666666655543
No 406
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.48 E-value=5.2 Score=32.47 Aligned_cols=71 Identities=23% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhcHHHHH
Q 024778 19 ELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 19 ~~Ai~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
..|...|-++-... =+++.+.+.+|..|. ..+-.+|+..+.+++++... ++..+..++.+++.+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56666666544332 256888888887765 67889999999999998654 4788999999999999999884
No 407
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.19 E-value=29 Score=31.37 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=77.8
Q ss_pred HHHHhhCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 11 EAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 11 ~~~~~~~~~-~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
..-+.|.|+ +++++=.+.+..+|....+|..|=.++... .-+++-+.....++..+|+...+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 334556665 466777778888888877766655554332 2355667788899999999999999999
Q ss_pred HHHHHhhc--HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 78 TACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 78 ~~~~~lg~--~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
-++.+.+. +..-++.++++++.+|.+-..+....-+....
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 99887664 68888999999999998876655444444433
No 408
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=84.08 E-value=8.9 Score=34.87 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-----C---HHH--HHHHHHHHH-------Hcc-----CHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-----S---AEL--FADRAQASI-------KLQ-----NFTEAVADANR 61 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-----~---~~~--~~~~a~~~~-------~~~-----~~~~A~~~~~~ 61 (262)
..++.|..++..|+|.+|+..|..+|..-|- . ..+ ++.++.=|. .++ ..++..+.++.
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 3567899999999999999999999986221 1 111 112222111 111 12233333333
Q ss_pred HHHc-----CCCCHHHHHHHHH-HHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 62 AIEL-----EPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 62 al~l-----~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+.-. .|.+...-++.|. ..++.++|..|..+.++.++++|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3322 2222222223333 455789999999999999999997653
No 409
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.80 E-value=12 Score=30.31 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHHHHhhcc
Q 024778 52 FTEAVADANRAIELEP--SMSKAYWRKATACMKLEEYETAKVALEKGASLAPG----DSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 52 ~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~----~~~~~~~l~~~~~~l~~~~~~ 123 (262)
-+.|+.-|-.+ +-.| +.+..++.+|..|. ..+-++|+..|.+++++... |+++...|..+...+++...+
T Consensus 122 d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45565555333 2223 35677777776444 78899999999999998754 467778888888877765543
No 410
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.45 E-value=3 Score=27.37 Aligned_cols=28 Identities=46% Similarity=0.504 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
..+...|..+=..|+|++|+.+|.+++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666666667777777777766665
No 411
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=83.16 E-value=16 Score=34.24 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 26 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+-++.+|.|...|+.+-.-+.-. -+++....|++.+...|..+.+|-..........+|+.-...|.+|+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567888999999998877666444 8999999999999999999999999999999999999999999999864
No 412
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.15 E-value=2.4 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
..+..+|..+=..|+|.+|+.+|.++|.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455566666666666666666666554
No 413
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.01 E-value=2.4 Score=43.11 Aligned_cols=98 Identities=26% Similarity=0.363 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYD------LYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~------~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 66 (262)
+....+.|.....++.+.+|.+ +++.... +.|..+.+|..++..+.+++++++|+....++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4567788888999999998888 5543333 357778999999999999999999999988887653
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
|+....+-+++...+..+....|...+.++..+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 345678889999999998888888888877764
No 414
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=82.92 E-value=6.4 Score=28.46 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=20.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 024778 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (262)
Q Consensus 41 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg 84 (262)
..|..-+..|++..|.+.+.++-+..+...-.|+.-+.+-..+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34444444555555555555554443333334444444443333
No 415
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.24 E-value=21 Score=34.21 Aligned_cols=90 Identities=9% Similarity=0.040 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHHHHccCHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-------S-------------------AELFADRAQASIKLQNFTEAVAD 58 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-------~-------------------~~~~~~~a~~~~~~~~~~~A~~~ 58 (262)
++--|......+..+.|.+++.++++.-.. . ..+++..+.+.+-++++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 344466667777777787777777764111 0 23455677777778999999888
Q ss_pred HHHHHHcC---CC------CHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 59 ANRAIELE---PS------MSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 59 ~~~al~l~---p~------~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
...+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88776543 22 36789999999999999999999998
No 416
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.14 E-value=2.6 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
|..+..+|..+=+.|+|.+|+.+|..++..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555666666666777777666666653
No 417
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.87 E-value=25 Score=28.15 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCCHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATA 79 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~p~~~~a~~~~g~~ 79 (262)
.+..|......|+-..|+..|+++-...+.- -.+...-+.++...|.|+.-..-.+-.- .-+|-...+.-.+|.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglA 176 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLA 176 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHH
Confidence 4455666667777777777777766554321 1234445555556667765443332111 1122233455568888
Q ss_pred HHHhhcHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~ 98 (262)
-++-|+|..|...|.....
T Consensus 177 a~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccchHHHHHHHHHHHc
Confidence 8888999999988887766
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.79 E-value=3.5 Score=24.68 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 40 ADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 40 ~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+.+|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688899999999999999988885
No 419
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.67 E-value=9.5 Score=28.44 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH----HH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRA----IE 64 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~ 64 (262)
.+...|+.+++.+++-.++-.|++|+.+..+- ..-..|+|..+..+|+-+-.+++++.| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999863221 223457888888888888888877654 44
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 65 l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
+-|..+.... -.-...+|.-..|+-.|- +..| ||.+.+.+..
T Consensus 83 LiPQCp~~~C--~afi~sLGCCk~ALl~F~---KRHP-NP~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTEC--EAFIDSLGCCKKALLDFM---KRHP-NPEIARLVQH 124 (140)
T ss_pred hccCCCCcch--HHHHHhhhccHHHHHHHH---HhCC-CHHHHHHHHh
Confidence 5565432110 001224555555654443 3344 4555544444
No 420
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.70 E-value=9.3 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
|.+|++.|.+++...|+++.......++
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3344444555556677766543333333
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.52 E-value=22 Score=32.69 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 68 SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
++...|-++|.+....|+++-|..+|+++-.+
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 46779999999999999999999999987643
No 422
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.98 E-value=4.5 Score=35.73 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP--------NSAELFADRAQASIKLQNFTEAV 56 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~ 56 (262)
..+...|+.++..++|..|...|..|..+.. ....+++..|..++.++++..++
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888889999999999999888887632 23566666777777776666544
No 423
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.63 E-value=18 Score=36.65 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----------C----
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----------S---- 68 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-----------~---- 68 (262)
.+...|+.+|..|.|+.|.-+|.. ..-|..+|..+..+|+|..|.+..++|-...- .
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 345679999999999999888875 34577899999999999999999988754321 0
Q ss_pred ----------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 69 ----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 69 ----------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
+..-+-.+-..|...|.|++-+..++.++.+....-.....++-+
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 011122234445667888888888888887765443333334433
No 424
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.52 E-value=21 Score=33.30 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHHhhc-HHHHHHHHHHhhccCCCCH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELE---P----SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDS 104 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---p----~~~~a~~~~g~~~~~lg~-~~~A~~~~~~a~~l~p~~~ 104 (262)
--++-+|.++..+|+...|..++..++... - -.+.|+|.+|..+..+|. ..++.+++.+|.....+..
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 345668999999999999999998887431 1 135799999999999999 9999999999999876543
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.41 E-value=3.9 Score=27.59 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
.+..+|...=..|+|++|+.+|..||+.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3455555555666666666666666654
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.20 E-value=12 Score=29.99 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
....++..++.++..| ++..+.+++.++..+|+.++|...+.++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777777 6778999999999999999999999999999993
No 427
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.14 E-value=31 Score=34.19 Aligned_cols=95 Identities=20% Similarity=0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-----HH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--S-------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SK 71 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~ 71 (262)
...+-.+.....|.+|..+..++...-+. . +.+..-+|.+....++.++|++.++.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 34566677888899998888887766443 1 4555668888888999999999999999876653 46
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
++...|.+..-.|++..|..+...+.++.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 77888999999999999999988888763
No 428
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.00 E-value=43 Score=33.42 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHH----------c--cCHHHH--HHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN----------SAELFADRAQASIK----------L--QNFTEA--VADA 59 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~----------~~~~~~~~a~~~~~----------~--~~~~~A--~~~~ 59 (262)
.-.+.|..+...|+|.+|+++|..+|-.-|- .+.-+...+.-|+- + ++.+.+ +..|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 4467899999999999999999999875332 12333344433321 1 233344 2222
Q ss_pred HHHHHcCCCCH-HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 60 NRAIELEPSMS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 60 ~~al~l~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
=.-..+.|-+. .++..--.+++.++++..|..+..+.+++.|..+.+.
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 22223445443 3333334478899999999999999999999877543
No 429
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.77 E-value=4.6 Score=27.08 Aligned_cols=28 Identities=39% Similarity=0.425 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
..+..+|...=..|+|++|+.+|.+++.
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
No 430
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.11 E-value=26 Score=31.81 Aligned_cols=96 Identities=19% Similarity=0.053 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------HHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQN--------------FTEAVADANRAI 63 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~--------------~~~A~~~~~~al 63 (262)
.+...|+.+|-.+||+.|...|..+.+..-++ +.++-..|.|++..+. ++.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999998876444 3344445666665552 233333343321
Q ss_pred ----HcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 64 ----ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 64 ----~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
....--..+.+..+.++...+.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111122356667777788888888877766666554
No 431
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.98 E-value=5.8 Score=35.89 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=52.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
....+|++.++.+.|+..-.+.|-++|.....+..+|.|+..+.+|.+|.+.+.-+.-+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999998877666543
No 432
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.81 E-value=43 Score=30.08 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH--HccCHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASI--KLQNFTEAVADAN 60 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-----~~~~~~~~a~~~~--~~~~~~~A~~~~~ 60 (262)
..++..+++.++|..|...|.+++...+. ....+..++.+|. ..-+|.+|...++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44667899999999999999999987542 2345556666665 4568889988887
No 433
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=75.46 E-value=6.4 Score=26.34 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=6.6
Q ss_pred HHHhhCHHHHHHHHHHH
Q 024778 12 AFIDDYFELAYDLYSQA 28 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~a 28 (262)
+=..|+|++|+.+|..+
T Consensus 18 ~d~~g~~~eAl~~Y~~a 34 (77)
T smart00745 18 ADEAGDYEEALELYKKA 34 (77)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333444444333333
No 434
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=74.96 E-value=6.9 Score=26.32 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
.+..+|...=..|+|++|+.+|..+|.
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555556666666666655554
No 435
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=74.63 E-value=44 Score=31.49 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=65.5
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCC-HHHHHHHHHHHHHhhcH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSM-SKAYWRKATACMKLEEY 86 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p~~-~~a~~~~g~~~~~lg~~ 86 (262)
..++..+|+.-|...|.-.|+..++++.+-.....-+..+++-..|...|++++.. .++- ...|-++-.--..-|+.
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 34677888888899999888888888888777777888888888888888888876 4332 24555555555566776
Q ss_pred HHHHHHHHHhhccCC
Q 024778 87 ETAKVALEKGASLAP 101 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p 101 (262)
..+...=++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666655554444433
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.58 E-value=45 Score=33.12 Aligned_cols=91 Identities=15% Similarity=0.029 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----C--HHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS----M--SKA 72 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~--~~a 72 (262)
...-.|..+...++++.|+++.+.++..-|.+ ..++...|.++.-.|++.+|+.....+.++... . ..+
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34556778889999999999999999987765 577888999999999999999988888877432 2 234
Q ss_pred HHHHHHHHHHhhc--HHHHHHHHH
Q 024778 73 YWRKATACMKLEE--YETAKVALE 94 (262)
Q Consensus 73 ~~~~g~~~~~lg~--~~~A~~~~~ 94 (262)
.+..+.++...|+ +++....|.
T Consensus 540 ~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 540 LLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5567888888883 444444443
No 437
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.40 E-value=7.1 Score=26.01 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
.+...|..+=..|+|++|+.+|..++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555544
No 438
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.52 E-value=77 Score=30.22 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=64.1
Q ss_pred HHHHHHHH---HHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 5 LEKKAKEA---FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 5 l~~~g~~~---~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+...|..+ .+.+..+.+..+.+.-+-.....+..++.+|..+-..++.+.|-.+|++.+..+++ .+++.++.-++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 85 (578)
T PRK15490 8 LAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLY 85 (578)
T ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHH
Confidence 34444443 34555666666666655555556677778888888888889999999999888887 57788888888
Q ss_pred HhhcHHHHHHHHH
Q 024778 82 KLEEYETAKVALE 94 (262)
Q Consensus 82 ~lg~~~~A~~~~~ 94 (262)
+.|-..+|...++
T Consensus 86 ~~~~~~~~~~~~~ 98 (578)
T PRK15490 86 NTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhHHHHHHH
Confidence 8888888877776
No 439
>PF12854 PPR_1: PPR repeat
Probab=72.25 E-value=10 Score=20.96 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANR 61 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 61 (262)
|...|..+-..|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355666777778888888888877654
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.43 E-value=19 Score=28.77 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 024778 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (262)
Q Consensus 18 ~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 67 (262)
....++...+.++..|+ +..+.+++.++..+|+.++|.+...++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455566677777775 78888999999999999999999999999999
No 441
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.24 E-value=33 Score=30.40 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
...+.+|.-|+...+++.|+--++++.
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan 152 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRAN 152 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHH
Confidence 345556666766666665554444443
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.14 E-value=9.5 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
++.+|...=..|+|++|..+|..+|+
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444555555555554444
No 443
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.59 E-value=38 Score=31.70 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 19 ~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
....+.+.......|+++...+..+..+...|+.+.|+..++.++...-. ....+|-+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444555555678888888888898988888877777777777661111 2346778888888888888888888777
Q ss_pred hccCCCCHHHHHHHH
Q 024778 97 ASLAPGDSRFTNLIK 111 (262)
Q Consensus 97 ~~l~p~~~~~~~~l~ 111 (262)
...+.=...+...+.
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 665543333444443
No 444
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=70.43 E-value=69 Score=27.48 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=73.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHccCHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQA---SIKLQNFT----EAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~---~~~~~~~~----~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
....++..++|++--+.|.+......+ +.+..+.++.. ++.+.... ...+.++.=+...|++..+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456788999999999999988865433 22221222211 22222221 2344455556778999999998888
Q ss_pred HHHHhh----------------------cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 79 ~~~~lg----------------------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
.++... ..+.|..++.+++.++|....+...+..+-..++
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 887753 2577888899999999988777766666655554
No 445
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.83 E-value=65 Score=29.68 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH
Q 024778 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EPSMSKAYWRKATACMK 82 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~p~~~~a~~~~g~~~~~ 82 (262)
.+++.|+.+.|.+...+ -++...|..+|...+..|+++-|..+|.++-.. --.+...+-.++.....
T Consensus 327 LAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555443322 346778888888888888888888877755322 12334444445555555
Q ss_pred hhcHHHHH
Q 024778 83 LEEYETAK 90 (262)
Q Consensus 83 lg~~~~A~ 90 (262)
.|++.-|.
T Consensus 402 ~~~~n~af 409 (443)
T PF04053_consen 402 RGDINIAF 409 (443)
T ss_dssp TT-HHHHH
T ss_pred ccCHHHHH
Confidence 55544443
No 446
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=58 Score=33.29 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
.|.+.|.+-++.+...+|++.|-+| +++..|...-.+-.+.|.|++-++++..|-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4556677777777777777777654 445555555555556666666555554443
No 447
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=52 Score=28.51 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCH-------------------------
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNF------------------------- 52 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~------------------------- 52 (262)
.+.|+.+.+.+++++|+..|.+.|.. .........+++..|...|++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred ---------------HHHHHHHHHHHHcCCCCHHHHHH------HHHHHHHhhcHHHHHHHHHHhh
Q 024778 53 ---------------TEAVADANRAIELEPSMSKAYWR------KATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 53 ---------------~~A~~~~~~al~l~p~~~~a~~~------~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
+.-+..+...++.....-..+++ +..+++..|.|.+|+....-.+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=67.72 E-value=30 Score=22.27 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKLQNFTEAVAD 58 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~ 58 (262)
+..|..+++.|+|=+|-+.+..+-...+.+. .+...-|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 5667788888888888888888876655431 1222233334455677666543
No 449
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=66.97 E-value=15 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS 35 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~ 35 (262)
..|..++..|++.+|+.+|-.||...|+-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 44555555555555555555555555553
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.27 E-value=96 Score=27.55 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
-..+|.|..++|+..+|++.++...+-.|-. ...+-++-.++..++-|.+-...+-+.-.+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3457889999999999999999888877732 3456677888888888888777776665543
No 451
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.18 E-value=15 Score=32.61 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEK 95 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~a~~~~g~~~~~lg~~~~A~~~~~~ 95 (262)
-++..|+-++.+++++.|...|..|..+.. .+..++|.+|.+++.++++..+.-.+-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 356788888899999999999999987743 3568999999999999999888765543
No 452
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=64.08 E-value=19 Score=19.90 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHH--HHHHHhh-----cHHHHHHHHHHhhcc
Q 024778 71 KAYWRKA--TACMKLE-----EYETAKVALEKGASL 99 (262)
Q Consensus 71 ~a~~~~g--~~~~~lg-----~~~~A~~~~~~a~~l 99 (262)
.+.+.+| .++..-. ++..|..+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4556666 3333322 356666666665543
No 453
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.05 E-value=1e+02 Score=34.20 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------ 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------------ 69 (262)
++-|.+.|..+...|.++.|-...-.|.+.. -+.++..+|..+-..|+-..|+..++..+..+-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 4567888888899999999999999988876 46888999999999999999999999999664211
Q ss_pred -----HHHHHHHHHHHHHhhcH--HHHHHHHHHhhccCCCC
Q 024778 70 -----SKAYWRKATACMKLEEY--ETAKVALEKGASLAPGD 103 (262)
Q Consensus 70 -----~~a~~~~g~~~~~lg~~--~~A~~~~~~a~~l~p~~ 103 (262)
..+.+..+.-....+++ .+-+..|..+.++.|..
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 12333344434444443 23456777777777743
No 454
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.95 E-value=48 Score=23.93 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+.+-+...+.+.|+|++|....+.. + .+++.-|++.|.-+++
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlG 82 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLG 82 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhc
Confidence 3344455566666666666544433 1 3445555555555544
No 455
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=63.69 E-value=10 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQ 27 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~ 27 (262)
||+.++.-|..++..||+..|+.++.=
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566777777777777777777776544
No 456
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.44 E-value=1.1e+02 Score=27.22 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCC---CCH---HHHHHHHHHHHHccCHHH--HHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISP---NSA---ELFADRAQASIKLQNFTE--AVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p---~~~---~~~~~~a~~~~~~~~~~~--A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+-|-.+...+||..|..+|-+|++-.. .+. ..+-.+-.|-..++..++ ++-....+++.+..+..+....+.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Confidence 345556677999999999999998632 112 223334444445565554 444456777878888899988888
Q ss_pred HHHH--hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 79 ACMK--LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 79 ~~~~--lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
++.+ +.+|+.|+..|..=+.-+| -.+..+..++..+-
T Consensus 294 A~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNLL 332 (411)
T ss_pred HhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHHH
Confidence 8875 7899999999987776554 56666666655543
No 457
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.27 E-value=19 Score=33.30 Aligned_cols=54 Identities=17% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
.....+|.--+..|+|.=+.+.+.+++-.+|++..+....+.++.++|.-.++.
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 445567777788899999999999999999999999999999999999876553
No 458
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.20 E-value=23 Score=33.75 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 24 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
+..+||.+.++.- .|-.+.+++|+++.|.+.+.+ .++..-|-.+|.+....+++..|.+||.++..+
T Consensus 629 ~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 629 MKEQALELSTDPD----QRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4556666655422 233344567788777664433 345667889999999999999999999988765
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.83 E-value=80 Score=25.44 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHH--HHHHHhCCCCHHHH----HHHHHHHHHc--cC--------------HHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLY--SQAIEISPNSAELF----ADRAQASIKL--QN--------------FTEAVADA 59 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~--~~al~~~p~~~~~~----~~~a~~~~~~--~~--------------~~~A~~~~ 59 (262)
-+-|+..+..+|+.|++.+=-+.- -++|-..|....+. ...++++.+. |+ ++-|+..+
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~ 92 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVL 92 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHH
Confidence 345778888999999887654432 34444445443332 2455555543 21 34566666
Q ss_pred HHHHHcCCCC---H----H-HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 60 NRAIELEPSM---S----K-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 60 ~~al~l~p~~---~----~-a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
+..-+-.+.. . . .--....++...|+|++|.+.+++... +|+....++.|..+
T Consensus 93 ~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 93 ESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 5554433321 1 1 112244578899999999999999999 88777665555544
No 460
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=62.05 E-value=33 Score=33.41 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
.|+..+|..+..+..|++|.++|..+
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666666666665443
No 461
>PF15469 Sec5: Exocyst complex component Sec5
Probab=61.31 E-value=79 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=12.1
Q ss_pred HccCHHHHHHHHHHHHHcC
Q 024778 48 KLQNFTEAVADANRAIELE 66 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al~l~ 66 (262)
..|+|+.++.+|.+|..+.
T Consensus 98 ~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HcCcHHHHHHHHHHHHHHH
Confidence 4566777777666666554
No 462
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.00 E-value=73 Score=24.37 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAF-IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 4 ~l~~~g~~~~-~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
.+...|..++ ..|.-++--+.+...++....++.+++.+|.+|.++|+..+|-..+.+|.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444443333 3344444444455554444455667777777777777777776666666543
No 463
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=60.13 E-value=30 Score=27.42 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=42.3
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC-----C---Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~-----~---~~~~~~~~L~~~i~~ 232 (262)
+.+...|.+-+....||+++|...++.|.|.-.-.. | +.|.....|...|+|
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp 129 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDP 129 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCCh
Confidence 566677888899999999999999999988853221 1 368888899999999
No 464
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.28 E-value=14 Score=35.93 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 11 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
.....++|..++.-..-|+...|.-..++..|+.+|..++.++-|++++.-....+|.+..+.-
T Consensus 102 m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 102 MQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 3456789999999999999999999999999999999999999999998888889998854443
No 465
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=1.3e+02 Score=26.65 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC---C--C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-----HH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP---N--S-AELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SK 71 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p---~--~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~ 71 (262)
+++...|..+.+.||-+.|.+.+.+..+..- . + .-+...+|..|....-..+-+.-+...++...+. .+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4556666666677777777666655554321 1 1 1223334444433333334444444444443321 12
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
+| .|.-+....+|.+|...|..++.
T Consensus 185 vY--~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VY--QGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HH--HHHHHHHHHhHHHHHHHHHHHcc
Confidence 22 45555566667666666655553
No 466
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.10 E-value=26 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=8.0
Q ss_pred HHHccCHHHHHHHHHHHH
Q 024778 46 SIKLQNFTEAVADANRAI 63 (262)
Q Consensus 46 ~~~~~~~~~A~~~~~~al 63 (262)
+-..|++++|+..|..++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 333444444444444443
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.27 E-value=1.3e+02 Score=28.71 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------CCCCH---HHHHHHHHHHHHccCHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI---------------------SPNSA---ELFADRAQASIKLQNFTEAVADA 59 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~---------------------~p~~~---~~~~~~a~~~~~~~~~~~A~~~~ 59 (262)
.+.+.+..+...||.+-|..+..++|=. .|.|- .+++..-..+.+.|.+.-|..++
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4566666777777777776666655531 22222 22233333444679999999999
Q ss_pred HHHHHcCCC-CHHHHHHHHHHHH-HhhcHHHHHHHHHHh
Q 024778 60 NRAIELEPS-MSKAYWRKATACM-KLEEYETAKVALEKG 96 (262)
Q Consensus 60 ~~al~l~p~-~~~a~~~~g~~~~-~lg~~~~A~~~~~~a 96 (262)
...+.++|. ++.+...+-.+|. +..+|+--+..++..
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999998 6654444433333 344555555544433
No 468
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.08 E-value=78 Score=27.17 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 20 LAYDLYSQAIEISPNSAELFADRAQASIKL----------------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 20 ~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~----------------------~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
.-...++.=++..|++..+++.+|.++... .-.+.|..++.+|+.++|+...++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 345666777778999999998888888764 1235688899999999999999988888
Q ss_pred HHHHHhhcHH
Q 024778 78 TACMKLEEYE 87 (262)
Q Consensus 78 ~~~~~lg~~~ 87 (262)
.+-..+|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8777777764
No 469
>PF13041 PPR_2: PPR repeat family
Probab=58.01 E-value=33 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
..|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34455555666666666666666666554
No 470
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.86 E-value=52 Score=21.74 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.3
Q ss_pred cCHHHHHHHHH
Q 024778 50 QNFTEAVADAN 60 (262)
Q Consensus 50 ~~~~~A~~~~~ 60 (262)
|++++|+..|.
T Consensus 22 g~~~eAl~~Y~ 32 (77)
T smart00745 22 GDYEEALELYK 32 (77)
T ss_pred CCHHHHHHHHH
Confidence 34443333333
No 471
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=57.58 E-value=35 Score=30.31 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=41.4
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 60 (262)
.+..-+|+-+++.++..+|.|..+...+..+|..+|-...|...|.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556688889999999999999999999999999999999988885
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.93 E-value=1.3e+02 Score=26.15 Aligned_cols=67 Identities=7% Similarity=-0.090 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
..++.++|.-|.+.++.+.+.+.+.+.++.+- +-.-.-.|+|.+|..+.-.++.++...-.++...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 66666666666666666666665555444321 11223345555555555555555544444444443
No 473
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.85 E-value=23 Score=18.17 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=9.9
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q 024778 42 RAQASIKLQNFTEAVADANRA 62 (262)
Q Consensus 42 ~a~~~~~~~~~~~A~~~~~~a 62 (262)
+-.+|.+.|++++|.+.+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444455555555544443
No 474
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=56.75 E-value=72 Score=29.29 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH--------------------HHccCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQAS--------------------IKLQNFTEAVADANR 61 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~~a~~~--------------------~~~~~~~~A~~~~~~ 61 (262)
..+..|...+..++|.+++..+..||+..- .+.++.+ +..|- ..-|.+-+-..++.+
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~C-r~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFC-RTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHH-HhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999998521 0111111 11111 011222233333333
Q ss_pred HHHcC---CC----------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 62 AIELE---PS----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 62 al~l~---p~----------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+..-- +. .-..|..+-.+|++.|+...|++.-...+-.+|++..++..+..-..+++...
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~ 184 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE 184 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc
Confidence 33221 11 12467778899999999999999999999999999999998888777766443
No 475
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=56.41 E-value=23 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=6.3
Q ss_pred cHHHHHHHHHHhh
Q 024778 85 EYETAKVALEKGA 97 (262)
Q Consensus 85 ~~~~A~~~~~~a~ 97 (262)
+...|..+|+++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555554443
No 476
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=56.25 E-value=65 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
..+..|.+.+..|+|..|.+.+.++.+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455666777777777777777777555
No 477
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.62 E-value=2e+02 Score=33.51 Aligned_cols=66 Identities=21% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--------cHHHHHHHHHHhhccCC
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE--------EYETAKVALEKGASLAP 101 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg--------~~~~A~~~~~~a~~l~p 101 (262)
++.+..+|..+.++|+.++|-..|..|++++-...++|...|.-+.+.- --..|..||-+|....-
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 6788889999999999999999999999999999999999998776531 12457777777776553
No 478
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.10 E-value=80 Score=23.03 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
..+..+|..-.....+++|...++-.-..+...-.+.+-+...+.+.|+|++| -.+......+++.-|+..|.-+
T Consensus 7 ~lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A-----Ll~~~~~~~pdL~p~~AL~a~k 81 (116)
T PF09477_consen 7 RLLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA-----LLLPQCHCYPDLEPWAALCAWK 81 (116)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH-----HHHHTTS--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH-----HHhcccCCCccHHHHHHHHHHh
Q ss_pred HH
Q 024778 117 IA 118 (262)
Q Consensus 117 l~ 118 (262)
++
T Consensus 82 lG 83 (116)
T PF09477_consen 82 LG 83 (116)
T ss_dssp CT
T ss_pred hc
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.01 E-value=24 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=10.7
Q ss_pred hCHHHHHHHHHHHHHhCC
Q 024778 16 DYFELAYDLYSQAIEISP 33 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p 33 (262)
+-|+.|.++.++||+.+.
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 345666666666666543
No 480
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.49 E-value=1.7e+02 Score=26.68 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=29.8
Q ss_pred HHHhhCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 12 AFIDDYFELAYDLYSQAIEI--SP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~--~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
|+..+.|+.|-.+..+..-- .. ..+.+++.+|.+..-..+|..|..++-.|+...|.
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34445555555544443210 11 11445555666666666666666666666666663
No 481
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.43 E-value=21 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQ 27 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~ 27 (262)
||+.++.-|..++..||+-.|..+++=
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sY 66 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSY 66 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 455666666666666666666666544
No 482
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.35 E-value=1.2e+02 Score=26.93 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 50 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
...-+|+..++.++..+|.+....+.+..+|..+|-...|...|.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456689999999999999999999999999999999999988885
No 483
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.13 E-value=61 Score=21.37 Aligned_cols=10 Identities=30% Similarity=0.315 Sum_probs=3.8
Q ss_pred cCHHHHHHHH
Q 024778 50 QNFTEAVADA 59 (262)
Q Consensus 50 ~~~~~A~~~~ 59 (262)
|++++|+..|
T Consensus 20 g~~~~Al~~Y 29 (75)
T cd02656 20 GNYEEALELY 29 (75)
T ss_pred CCHHHHHHHH
Confidence 3333333333
No 484
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=53.63 E-value=1.3e+02 Score=26.59 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CC--CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EP--SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 32 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
.|+..+.++..|...+.-|+|..|-.++-....+ ++ ++..+....--.-..+.+|+.|++.+.+..+
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444556666666666667777666654333222 22 2233333333334445666667666666555
No 485
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.57 E-value=33 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=24.6
Q ss_pred HccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhcHHHHHHHH
Q 024778 48 KLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVAL 93 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~lg~~~~A~~~~ 93 (262)
+.|+|..|.+...++. .|. ....|...+.-+-..|+|.+|...|
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 4455555544443332 222 2345666677777788887776655
No 486
>PF13041 PPR_2: PPR repeat family
Probab=52.94 E-value=47 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhcc--CCCCHHHHH
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASL--APGDSRFTN 108 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l--~p~~~~~~~ 108 (262)
...|-.+-..+.+.|++++|.+.|++..+. .|+...+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 446677778899999999999999998875 355444333
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.46 E-value=1.4e+02 Score=25.15 Aligned_cols=90 Identities=18% Similarity=0.011 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcC------CCCHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSKA 72 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~l~------p~~~~a 72 (262)
++.-+..+++.|++.-|.++..-.++. .+.+....-+++.++...+.-+ +-....++++.-. -.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 344456677788888777765444443 2334444556666666554322 2223333443321 246788
Q ss_pred HHHHHHHHHHhhcHHHHHHHHH
Q 024778 73 YWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
|..+|..+++.|++.+|..+|-
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 9999999999999999988874
No 488
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=51.21 E-value=2.1e+02 Score=26.67 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=48.1
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhcHHHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETA 89 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~lg~~~~A 89 (262)
++..||+..|-..|.-.|...|+++..-...-..++..++-+.|...|+.++..-... ...|-.+-.--..-|+...+
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 4556666666666666666666665555555555555666666666666555432211 12233333333344555555
Q ss_pred HHHHHHhhccCCC
Q 024778 90 KVALEKGASLAPG 102 (262)
Q Consensus 90 ~~~~~~a~~l~p~ 102 (262)
...=++..++.|.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 5555555555554
No 489
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.04 E-value=39 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=9.7
Q ss_pred HHHHccCHHHHHHHHHHHHH
Q 024778 45 ASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 45 ~~~~~~~~~~A~~~~~~al~ 64 (262)
-+-..|+|++|+.+|..++.
T Consensus 15 e~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33344555555555554443
No 490
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=89 Score=31.03 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=27.7
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+.+++...|.-|+.+...- ..+++ -..++...|.-+++.|++++|...|-+++.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4445555555555544331 11111 134455556666666666666666666554
No 491
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=50.70 E-value=5.2 Score=37.73 Aligned_cols=97 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHccCHHHHHHHHHH--HHHcCCC-CHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIE--ISP-NSAELFADRAQASIKLQNFTEAVADANR--AIELEPS-MSKAYWRKAT 78 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~--~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~--al~l~p~-~~~a~~~~g~ 78 (262)
++..+..++..|++..|...+.+.-. +.+ .........|.+....|++..|+..+.. ...+.+. ....+..++.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 45667889999999999999987652 222 2345667788888889999999998864 1122222 2345667888
Q ss_pred HHHHhhcHHHHHHHHHHhhccCC
Q 024778 79 ACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
++...|++-+|...+-..-.+-+
T Consensus 107 a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhhcC
Confidence 99999999888877655554433
No 492
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.46 E-value=42 Score=21.51 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 22 i~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
++.+-..++...++..-+...-..|..+|++++|.+++....
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444444444455555555555556666666666555443
No 493
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.13 E-value=60 Score=27.94 Aligned_cols=99 Identities=6% Similarity=0.014 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHhhcHHHHH
Q 024778 19 ELAYDLYSQAIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRKATAC------MKLEEYETAK 90 (262)
Q Consensus 19 ~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~------~~lg~~~~A~ 90 (262)
+.-+..++.+++.+|.+.+.|..|-.++..- .++..-+....+.+..|+.+..+|..+-.++ +.-.++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3456678999999999999999888887665 6788888888999999999887766555444 3333334444
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 91 VALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
++-...+.-++.|..++...-....++
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 555566667888877776554433333
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.03 E-value=75 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 72 AYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
.|-..+..|...|+|+-|.+.|.++
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc
Confidence 3445666777777777777766544
No 495
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=49.84 E-value=1.8e+02 Score=27.08 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=62.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 24 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
.+.+-++.+|++...|+.+-.-|.-.+.+++-.+.+++...-.|-...+|...-..-....+|..-...|-+|+...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 566778889999999999999999999999999999988887777666665554445556788888888888887543
No 496
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=49.48 E-value=35 Score=24.81 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
|..++.+|..++..||.+.|--+|.+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445666677777777777777766666654
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=48.95 E-value=80 Score=21.23 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=3.4
Q ss_pred cCHHHHHHH
Q 024778 50 QNFTEAVAD 58 (262)
Q Consensus 50 ~~~~~A~~~ 58 (262)
|+|++|+.+
T Consensus 20 g~y~eAl~~ 28 (77)
T cd02683 20 GRFQEALVC 28 (77)
T ss_pred ccHHHHHHH
Confidence 333333333
No 498
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.85 E-value=1.8e+02 Score=25.34 Aligned_cols=99 Identities=9% Similarity=-0.080 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KA 72 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a 72 (262)
++++.+.|..|.+.+|-+.+.+...+.++..-.- ......+|..|-.+.-.++.++.+...++...+.- ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4678889999999999999999888877653211 12334556666555556677777777777665421 11
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 73 YWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
--..|..+....+|.+|...|..++.--
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2235777778888999888887776543
No 499
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=48.16 E-value=43 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHHcc-CHHHHHHHHHHHHHcCC
Q 024778 41 DRAQASIKLQ-NFTEAVADANRAIELEP 67 (262)
Q Consensus 41 ~~a~~~~~~~-~~~~A~~~~~~al~l~p 67 (262)
.+|..+...| ++.+|..+|-+||...|
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~ 122 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYP 122 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 4555566666 66666666666666655
No 500
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.04 E-value=69 Score=27.59 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 13 FIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
++..+.++|+..|.+.+.+.+.-+ .++-.+-.+++++++|.+-+..|.+.+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345588999999999999987753 4666777888999999988877776654
Done!