Query 024778
Match_columns 262
No_of_seqs 312 out of 1674
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 14:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 2.7E-21 9.3E-26 145.0 16.5 112 2-113 13-124 (126)
2 2hr2_A Hypothetical protein; a 99.8 2.9E-20 1E-24 144.0 9.9 121 1-121 10-153 (159)
3 3rkv_A Putative peptidylprolyl 99.8 2.9E-19 9.8E-24 138.8 14.7 122 2-123 11-151 (162)
4 3upv_A Heat shock protein STI1 99.8 6.3E-19 2.2E-23 130.9 15.0 116 2-117 4-125 (126)
5 3sz7_A HSC70 cochaperone (SGT) 99.8 2.2E-18 7.7E-23 134.0 17.2 122 2-123 11-134 (164)
6 2xcm_C SGT1-like protein, cyto 99.8 9E-20 3.1E-24 129.3 8.3 80 172-251 1-91 (92)
7 1wh0_A Ubiquitin carboxyl-term 99.8 2.2E-19 7.6E-24 135.0 7.9 80 173-252 19-122 (134)
8 4gcn_A Protein STI-1; structur 99.8 3.4E-18 1.2E-22 128.0 13.8 111 2-113 8-125 (127)
9 3gyz_A Chaperone protein IPGC; 99.8 7.7E-18 2.6E-22 130.2 15.5 103 2-104 36-138 (151)
10 2vgx_A Chaperone SYCD; alterna 99.8 1.4E-17 4.9E-22 128.0 15.8 119 3-121 22-140 (148)
11 2xcb_A PCRH, regulatory protei 99.8 1.6E-17 5.6E-22 126.2 15.1 118 3-120 19-136 (142)
12 1rl1_A Suppressor of G2 allele 99.8 1E-18 3.5E-23 128.8 8.0 84 171-254 7-101 (114)
13 1x5m_A Calcyclin-binding prote 99.8 3.3E-18 1.1E-22 128.2 9.6 78 174-251 21-114 (127)
14 4ga2_A E3 SUMO-protein ligase 99.8 8.8E-18 3E-22 129.3 12.2 113 4-116 33-146 (150)
15 3q49_B STIP1 homology and U bo 99.7 8.5E-17 2.9E-21 120.4 15.1 120 2-121 9-133 (137)
16 2fbn_A 70 kDa peptidylprolyl i 99.7 2.1E-16 7E-21 126.6 17.2 122 2-123 38-175 (198)
17 1hxi_A PEX5, peroxisome target 99.7 1.5E-16 5.1E-21 118.1 14.0 102 4-105 19-120 (121)
18 3urz_A Uncharacterized protein 99.7 2.1E-16 7.3E-21 127.9 15.8 117 2-118 4-136 (208)
19 1p5q_A FKBP52, FK506-binding p 99.7 3.1E-16 1E-20 136.5 17.3 122 2-123 147-283 (336)
20 1elw_A TPR1-domain of HOP; HOP 99.7 7.2E-16 2.5E-20 111.3 16.3 114 2-115 4-117 (118)
21 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.7E-16 9.4E-21 142.4 15.7 121 2-122 268-403 (457)
22 2lni_A Stress-induced-phosphop 99.7 3.6E-16 1.2E-20 115.6 13.6 116 3-118 17-132 (133)
23 2xev_A YBGF; tetratricopeptide 99.7 8.2E-16 2.8E-20 113.8 15.0 115 1-115 1-121 (129)
24 2pl2_A Hypothetical conserved 99.7 5.6E-16 1.9E-20 126.2 15.1 119 3-121 6-135 (217)
25 2vyi_A SGTA protein; chaperone 99.7 2.1E-15 7E-20 110.7 16.7 117 3-119 13-129 (131)
26 4gyw_A UDP-N-acetylglucosamine 99.7 3.6E-16 1.2E-20 148.9 15.7 117 3-119 10-126 (723)
27 2dba_A Smooth muscle cell asso 99.7 1.7E-15 5.8E-20 114.2 15.3 113 2-114 28-143 (148)
28 1ihg_A Cyclophilin 40; ppiase 99.7 6.4E-16 2.2E-20 136.4 14.1 122 2-123 223-360 (370)
29 1a17_A Serine/threonine protei 99.7 4.6E-15 1.6E-19 113.9 17.2 112 2-113 13-124 (166)
30 1elr_A TPR2A-domain of HOP; HO 99.7 3.3E-15 1.1E-19 109.8 15.0 118 2-120 4-128 (131)
31 4ga2_A E3 SUMO-protein ligase 99.7 9.3E-17 3.2E-21 123.6 6.7 115 7-121 2-116 (150)
32 4gyw_A UDP-N-acetylglucosamine 99.7 1.8E-15 6.1E-20 144.1 15.9 120 2-121 43-162 (723)
33 3vtx_A MAMA; tetratricopeptide 99.6 5.3E-15 1.8E-19 116.3 15.9 115 2-116 5-119 (184)
34 4i17_A Hypothetical protein; T 99.6 3.5E-15 1.2E-19 121.5 15.2 119 2-120 7-133 (228)
35 2pl2_A Hypothetical conserved 99.6 3.9E-15 1.3E-19 121.2 15.3 120 3-123 40-170 (217)
36 2h6f_A Protein farnesyltransfe 99.6 1.7E-15 5.9E-20 134.2 13.7 118 3-120 98-216 (382)
37 1na0_A Designed protein CTPR3; 99.6 1.6E-14 5.4E-19 105.0 16.6 116 2-117 9-124 (125)
38 1zu2_A Mitochondrial import re 99.6 2.6E-15 8.9E-20 115.9 12.3 106 12-117 12-138 (158)
39 2kmw_A Uncharacterized protein 99.6 3.7E-16 1.2E-20 119.9 6.8 77 174-252 5-92 (150)
40 2h6f_A Protein farnesyltransfe 99.6 4E-15 1.4E-19 131.8 13.4 116 2-117 131-247 (382)
41 2if4_A ATFKBP42; FKBP-like, al 99.6 9.4E-16 3.2E-20 133.5 8.7 118 2-119 179-313 (338)
42 1ejf_A Progesterone receptor P 99.6 1.3E-15 4.3E-20 113.8 7.6 77 175-253 5-94 (125)
43 2c2l_A CHIP, carboxy terminus 99.6 1.8E-14 6.1E-19 122.1 15.0 102 2-103 4-105 (281)
44 4i17_A Hypothetical protein; T 99.6 2.7E-14 9.1E-19 116.3 15.4 117 4-120 44-169 (228)
45 3urz_A Uncharacterized protein 99.6 8.7E-14 3E-18 112.4 17.3 106 8-114 60-200 (208)
46 2kck_A TPR repeat; tetratricop 99.6 1.3E-14 4.5E-19 103.7 10.9 102 3-104 7-111 (112)
47 3k9i_A BH0479 protein; putativ 99.6 2.9E-15 1E-19 109.8 7.4 100 14-113 2-104 (117)
48 3vtx_A MAMA; tetratricopeptide 99.6 7.9E-14 2.7E-18 109.6 15.8 121 3-123 40-160 (184)
49 2e2e_A Formate-dependent nitri 99.6 7.2E-14 2.5E-18 109.3 15.0 113 3-115 45-160 (177)
50 3gyz_A Chaperone protein IPGC; 99.6 2E-15 6.9E-20 116.6 5.4 110 14-123 14-123 (151)
51 1wao_1 Serine/threonine protei 99.6 9.9E-15 3.4E-19 132.9 10.4 122 3-124 7-130 (477)
52 2fo7_A Synthetic consensus TPR 99.5 1.9E-13 6.4E-18 100.3 14.8 119 2-120 1-119 (136)
53 3qky_A Outer membrane assembly 99.5 6.9E-14 2.4E-18 116.3 13.8 106 2-107 15-134 (261)
54 1hh8_A P67PHOX, NCF-2, neutrop 99.5 5E-13 1.7E-17 107.2 16.9 102 3-104 38-155 (213)
55 3uq3_A Heat shock protein STI1 99.5 2.1E-13 7.3E-18 111.6 14.5 111 3-113 140-256 (258)
56 3as5_A MAMA; tetratricopeptide 99.5 5.1E-13 1.8E-17 103.5 15.8 119 3-121 43-161 (186)
57 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.7E-13 5.7E-18 109.9 13.3 118 3-123 7-140 (213)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.3E-13 1.8E-17 110.6 16.7 111 3-113 44-154 (275)
59 2l6j_A TPR repeat-containing p 99.5 2.1E-14 7.3E-19 103.0 6.7 94 2-95 4-103 (111)
60 4abn_A Tetratricopeptide repea 99.5 1.6E-13 5.5E-18 124.7 14.0 122 3-124 171-312 (474)
61 2vsy_A XCC0866; transferase, g 99.5 3.6E-13 1.2E-17 124.6 15.7 116 2-117 23-138 (568)
62 1wgv_A KIAA1068 protein; CS do 99.5 7.1E-14 2.4E-18 104.1 8.8 80 174-253 20-113 (124)
63 4abn_A Tetratricopeptide repea 99.5 2.3E-13 8E-18 123.6 14.0 115 2-117 102-226 (474)
64 1fch_A Peroxisomal targeting s 99.5 5.1E-13 1.7E-17 115.5 15.5 122 2-123 217-349 (368)
65 2pzi_A Probable serine/threoni 99.5 7.2E-14 2.5E-18 132.5 10.9 120 3-123 434-553 (681)
66 4gco_A Protein STI-1; structur 99.5 8E-14 2.7E-18 104.0 8.6 97 27-123 4-100 (126)
67 3as5_A MAMA; tetratricopeptide 99.5 4.5E-13 1.5E-17 103.9 13.1 120 3-122 9-128 (186)
68 3uq3_A Heat shock protein STI1 99.5 4.7E-13 1.6E-17 109.5 13.6 122 2-123 79-226 (258)
69 3ieg_A DNAJ homolog subfamily 99.5 1.9E-12 6.4E-17 110.8 17.9 116 5-120 237-356 (359)
70 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.7E-17 106.1 16.1 117 4-120 59-175 (243)
71 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.4E-17 106.9 15.1 120 3-122 92-211 (243)
72 2kat_A Uncharacterized protein 99.5 9.9E-13 3.4E-17 95.6 13.4 104 19-122 2-107 (115)
73 2vgx_A Chaperone SYCD; alterna 99.5 5.1E-14 1.7E-18 108.0 6.7 106 18-123 3-108 (148)
74 3qou_A Protein YBBN; thioredox 99.5 5.7E-13 2E-17 113.1 13.9 119 3-121 118-272 (287)
75 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.6E-12 5.3E-17 106.1 15.4 106 2-107 4-133 (225)
76 4eqf_A PEX5-related protein; a 99.5 7.1E-13 2.4E-17 115.0 14.1 118 3-120 214-343 (365)
77 3ieg_A DNAJ homolog subfamily 99.5 9.3E-13 3.2E-17 112.7 14.6 110 2-111 3-115 (359)
78 3qky_A Outer membrane assembly 99.5 1.7E-12 5.8E-17 107.9 15.4 121 3-123 90-251 (261)
79 2vq2_A PILW, putative fimbrial 99.5 1.8E-12 6.3E-17 103.8 14.9 116 3-118 9-127 (225)
80 4eqf_A PEX5-related protein; a 99.5 5.8E-13 2E-17 115.6 12.8 119 5-123 180-300 (365)
81 3u4t_A TPR repeat-containing p 99.4 3.8E-13 1.3E-17 111.6 10.7 120 3-123 4-127 (272)
82 3u4t_A TPR repeat-containing p 99.4 1.2E-12 4.2E-17 108.4 13.8 117 3-119 75-191 (272)
83 2vq2_A PILW, putative fimbrial 99.4 2.9E-12 9.9E-17 102.6 15.4 120 3-122 43-165 (225)
84 2ho1_A Type 4 fimbrial biogene 99.4 2.2E-12 7.5E-17 105.8 14.7 117 4-120 73-191 (252)
85 2ho1_A Type 4 fimbrial biogene 99.4 1.5E-12 5E-17 106.9 13.5 120 2-121 37-158 (252)
86 2pzi_A Probable serine/threoni 99.4 2.8E-13 9.7E-18 128.4 10.4 112 2-114 467-578 (681)
87 2r5s_A Uncharacterized protein 99.4 9.2E-13 3.1E-17 103.3 11.6 117 4-120 8-160 (176)
88 2cg9_X CO-chaperone protein SB 99.4 6.1E-14 2.1E-18 105.7 3.7 77 174-252 7-110 (134)
89 3cv0_A Peroxisome targeting si 99.4 2.7E-12 9.4E-17 108.6 14.4 121 3-123 173-305 (327)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.1E-12 7E-17 105.4 13.1 121 3-123 42-203 (225)
91 1w3b_A UDP-N-acetylglucosamine 99.4 2.7E-12 9.4E-17 112.3 14.7 115 4-118 171-285 (388)
92 1w3b_A UDP-N-acetylglucosamine 99.4 2.7E-12 9.2E-17 112.3 14.6 109 6-114 241-349 (388)
93 2e2e_A Formate-dependent nitri 99.4 3.2E-13 1.1E-17 105.6 7.7 115 9-123 17-134 (177)
94 2fo7_A Synthetic consensus TPR 99.4 6.2E-12 2.1E-16 92.0 14.2 100 3-102 36-135 (136)
95 3hym_B Cell division cycle pro 99.4 3.6E-12 1.2E-16 108.0 14.4 118 3-120 91-209 (330)
96 2xcb_A PCRH, regulatory protei 99.4 4.2E-13 1.4E-17 101.6 7.2 101 23-123 5-105 (142)
97 2y4t_A DNAJ homolog subfamily 99.4 8.6E-12 3E-16 110.8 16.9 109 2-110 26-137 (450)
98 3hym_B Cell division cycle pro 99.4 4.6E-12 1.6E-16 107.4 14.3 120 4-123 161-289 (330)
99 2o30_A Nuclear movement protei 99.4 4.6E-13 1.6E-17 100.6 7.1 75 174-252 5-91 (131)
100 2y4t_A DNAJ homolog subfamily 99.4 1.2E-11 4.1E-16 109.9 17.6 117 5-121 260-380 (450)
101 2gw1_A Mitochondrial precursor 99.4 8.2E-12 2.8E-16 112.4 16.2 103 2-105 6-108 (514)
102 1fch_A Peroxisomal targeting s 99.4 3.6E-12 1.2E-16 110.1 12.8 105 3-107 65-169 (368)
103 1wfi_A Nuclear distribution ge 99.4 1.6E-12 5.4E-17 97.7 8.8 76 174-252 8-99 (131)
104 2kc7_A BFR218_protein; tetratr 99.4 2.2E-12 7.6E-17 91.0 9.0 92 5-104 3-95 (99)
105 1na3_A Designed protein CTPR2; 99.4 1.6E-11 5.5E-16 84.6 12.4 80 4-83 11-90 (91)
106 3mkr_A Coatomer subunit epsilo 99.3 2.1E-11 7.3E-16 103.7 15.2 91 16-106 180-271 (291)
107 3mkr_A Coatomer subunit epsilo 99.3 2.2E-11 7.4E-16 103.6 14.9 118 3-120 131-250 (291)
108 3fp2_A TPR repeat-containing p 99.3 5.4E-12 1.9E-16 114.5 11.7 103 2-105 25-127 (537)
109 1p5q_A FKBP52, FK506-binding p 99.3 1.9E-11 6.6E-16 106.1 14.2 96 2-97 196-292 (336)
110 3cv0_A Peroxisome targeting si 99.3 8.7E-12 3E-16 105.5 11.4 107 3-109 22-128 (327)
111 3fp2_A TPR repeat-containing p 99.3 1.1E-11 3.8E-16 112.5 12.5 118 4-121 278-395 (537)
112 1qqe_A Vesicular transport pro 99.3 8.8E-12 3E-16 105.8 11.1 119 2-120 77-215 (292)
113 1a17_A Serine/threonine protei 99.3 5.4E-11 1.8E-15 90.9 14.2 96 3-98 48-145 (166)
114 1xnf_A Lipoprotein NLPI; TPR, 99.3 8E-12 2.7E-16 103.4 9.7 111 13-123 16-130 (275)
115 3upv_A Heat shock protein STI1 99.3 1.5E-11 5E-16 90.6 9.8 90 34-123 2-91 (126)
116 4g1t_A Interferon-induced prot 99.3 1.2E-10 4.1E-15 104.2 17.4 119 2-120 51-188 (472)
117 3ma5_A Tetratricopeptide repea 99.3 3E-11 1E-15 85.9 10.7 86 31-116 2-89 (100)
118 2vsy_A XCC0866; transferase, g 99.3 4.1E-11 1.4E-15 110.8 14.6 103 3-105 58-163 (568)
119 2l6j_A TPR repeat-containing p 99.3 4.6E-11 1.6E-15 85.3 11.5 89 35-123 3-97 (111)
120 3edt_B KLC 2, kinesin light ch 99.3 1.2E-11 4.1E-16 102.2 9.6 121 2-122 43-187 (283)
121 1qqe_A Vesicular transport pro 99.3 2.1E-11 7.2E-16 103.4 11.0 104 2-105 117-234 (292)
122 4gcn_A Protein STI-1; structur 99.3 1.7E-11 5.8E-16 91.2 8.7 71 35-105 7-77 (127)
123 2xpi_A Anaphase-promoting comp 99.3 1E-10 3.5E-15 107.7 15.5 119 3-121 374-492 (597)
124 3qor_A Nuclear migration prote 99.3 1.4E-11 4.7E-16 91.2 7.8 76 174-252 17-108 (121)
125 1na3_A Designed protein CTPR2; 99.3 6.1E-11 2.1E-15 81.6 10.5 84 34-117 7-90 (91)
126 1hxi_A PEX5, peroxisome target 99.2 8.2E-11 2.8E-15 86.7 11.7 86 38-123 19-104 (121)
127 2xpi_A Anaphase-promoting comp 99.2 1.4E-10 4.8E-15 106.7 15.3 118 4-121 443-567 (597)
128 3sz7_A HSC70 cochaperone (SGT) 99.2 5.7E-11 1.9E-15 91.7 9.9 92 32-123 7-98 (164)
129 3q49_B STIP1 homology and U bo 99.2 1.2E-10 4.2E-15 86.4 11.3 94 30-123 3-96 (137)
130 2gw1_A Mitochondrial precursor 99.2 5.4E-11 1.9E-15 107.0 10.6 105 5-109 375-488 (514)
131 2rh0_A NUDC domain-containing 99.2 2E-11 7E-16 94.2 6.7 75 173-251 13-103 (157)
132 2ond_A Cleavage stimulation fa 99.2 1.4E-10 4.6E-15 99.0 12.4 114 4-117 101-216 (308)
133 4a1s_A PINS, partner of inscut 99.2 9.7E-11 3.3E-15 102.8 11.6 118 2-119 48-181 (411)
134 3edt_B KLC 2, kinesin light ch 99.2 5E-11 1.7E-15 98.4 9.2 97 3-99 86-198 (283)
135 2fbn_A 70 kDa peptidylprolyl i 99.2 1.7E-10 5.7E-15 91.8 11.9 96 3-98 89-185 (198)
136 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.4E-10 4.9E-15 104.7 12.7 96 2-97 317-413 (457)
137 1wao_1 Serine/threonine protei 99.2 5.4E-11 1.8E-15 108.2 9.4 102 2-103 40-154 (477)
138 3rkv_A Putative peptidylprolyl 99.2 2E-10 6.8E-15 88.4 11.0 87 3-89 64-151 (162)
139 2kck_A TPR repeat; tetratricop 99.2 4.5E-11 1.5E-15 84.9 6.6 92 32-123 2-96 (112)
140 2vyi_A SGTA protein; chaperone 99.2 4.1E-10 1.4E-14 81.9 11.9 84 3-86 47-130 (131)
141 2if4_A ATFKBP42; FKBP-like, al 99.2 3.4E-11 1.2E-15 104.6 6.9 102 4-105 232-334 (338)
142 1pc2_A Mitochondria fission pr 99.2 3.9E-10 1.3E-14 86.1 11.7 105 16-120 12-121 (152)
143 3ro2_A PINS homolog, G-protein 99.2 2.4E-10 8.4E-15 96.2 11.7 117 3-119 6-138 (338)
144 2hr2_A Hypothetical protein; a 99.2 1.3E-10 4.4E-15 89.8 9.0 88 36-123 11-121 (159)
145 1ouv_A Conserved hypothetical 99.2 7.9E-10 2.7E-14 92.0 14.6 109 2-116 6-122 (273)
146 1dce_A Protein (RAB geranylger 99.1 9.4E-10 3.2E-14 102.1 16.3 115 3-117 64-191 (567)
147 2ond_A Cleavage stimulation fa 99.1 9E-10 3.1E-14 93.9 15.0 106 3-108 51-172 (308)
148 3sf4_A G-protein-signaling mod 99.1 2E-10 6.9E-15 100.0 11.2 118 2-119 9-142 (406)
149 3ro3_A PINS homolog, G-protein 99.1 1.5E-10 5E-15 87.3 8.7 119 2-120 9-145 (164)
150 3ulq_A Response regulator aspa 99.1 1.2E-10 4.2E-15 101.9 9.3 119 2-120 143-280 (383)
151 2lni_A Stress-induced-phosphop 99.1 3.8E-10 1.3E-14 82.7 10.6 83 3-85 51-133 (133)
152 3nf1_A KLC 1, kinesin light ch 99.1 1.4E-10 4.7E-15 97.3 8.9 120 3-122 70-213 (311)
153 3nf1_A KLC 1, kinesin light ch 99.1 1.9E-10 6.5E-15 96.5 9.1 97 3-99 112-224 (311)
154 1ihg_A Cyclophilin 40; ppiase 99.1 7.8E-10 2.7E-14 97.3 13.1 90 3-92 274-363 (370)
155 3k9i_A BH0479 protein; putativ 99.1 5.1E-10 1.7E-14 81.5 9.8 72 3-74 28-99 (117)
156 3gw4_A Uncharacterized protein 99.1 2.2E-10 7.5E-15 90.5 8.1 99 2-100 26-137 (203)
157 3dra_A Protein farnesyltransfe 99.1 1.7E-09 5.7E-14 92.7 14.1 116 4-119 105-235 (306)
158 2kc7_A BFR218_protein; tetratr 99.1 1.1E-09 3.7E-14 76.9 10.4 69 39-107 3-72 (99)
159 2qfc_A PLCR protein; TPR, HTH, 99.1 9.7E-10 3.3E-14 92.9 11.9 117 5-121 118-253 (293)
160 3ma5_A Tetratricopeptide repea 99.1 1E-09 3.6E-14 77.8 10.2 83 2-84 7-91 (100)
161 2ifu_A Gamma-SNAP; membrane fu 99.1 4.5E-10 1.5E-14 95.9 9.6 100 3-104 117-228 (307)
162 3u3w_A Transcriptional activat 99.1 3.5E-10 1.2E-14 95.7 8.6 98 3-100 156-267 (293)
163 1dce_A Protein (RAB geranylger 99.1 1.6E-09 5.5E-14 100.5 13.8 117 3-119 108-241 (567)
164 3ulq_A Response regulator aspa 99.0 2.5E-10 8.4E-15 100.0 7.3 118 5-122 106-242 (383)
165 2ifu_A Gamma-SNAP; membrane fu 99.0 2.4E-10 8.2E-15 97.6 7.0 101 2-103 76-188 (307)
166 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-09 3.9E-14 92.5 10.8 99 2-100 155-267 (293)
167 3ro3_A PINS homolog, G-protein 99.0 1.2E-09 4.2E-14 82.1 9.9 99 3-101 50-160 (164)
168 3dra_A Protein farnesyltransfe 99.0 2.5E-09 8.5E-14 91.6 12.8 113 4-116 69-192 (306)
169 1na0_A Designed protein CTPR3; 99.0 4.5E-09 1.6E-13 75.6 12.4 82 3-84 44-125 (125)
170 3sf4_A G-protein-signaling mod 99.0 5.3E-10 1.8E-14 97.3 8.6 98 4-101 189-298 (406)
171 1ouv_A Conserved hypothetical 99.0 9.7E-09 3.3E-13 85.3 15.9 107 3-115 39-157 (273)
172 3q15_A PSP28, response regulat 99.0 9.9E-10 3.4E-14 96.1 10.2 121 2-122 141-279 (378)
173 3u3w_A Transcriptional activat 99.0 5.2E-10 1.8E-14 94.6 8.1 113 6-118 119-250 (293)
174 1elw_A TPR1-domain of HOP; HOP 99.0 2.4E-09 8.1E-14 76.4 10.5 88 35-122 3-90 (118)
175 2dba_A Smooth muscle cell asso 99.0 2.7E-09 9.3E-14 79.6 11.0 93 31-123 23-118 (148)
176 3dss_A Geranylgeranyl transfer 99.0 1.1E-08 3.9E-13 88.3 16.1 110 3-112 109-235 (331)
177 3bee_A Putative YFRE protein; 99.0 3.8E-09 1.3E-13 74.3 10.8 74 32-105 2-78 (93)
178 4f3v_A ESX-1 secretion system 99.0 2.6E-09 8.8E-14 90.2 11.6 106 4-110 137-247 (282)
179 2xev_A YBGF; tetratricopeptide 99.0 1.5E-09 5.1E-14 79.5 8.7 87 37-123 3-95 (129)
180 3dss_A Geranylgeranyl transfer 99.0 1.6E-08 5.6E-13 87.3 16.5 114 4-117 66-192 (331)
181 1zu2_A Mitochondrial import re 99.0 2.1E-09 7.1E-14 82.8 9.6 69 2-70 36-125 (158)
182 2c2l_A CHIP, carboxy terminus 99.0 2.7E-09 9.4E-14 90.0 11.3 90 33-122 1-90 (281)
183 4g1t_A Interferon-induced prot 99.0 3.7E-09 1.3E-13 94.4 12.8 103 3-105 248-369 (472)
184 3rjv_A Putative SEL1 repeat pr 99.0 3.9E-09 1.3E-13 85.2 11.5 110 2-116 18-137 (212)
185 3q15_A PSP28, response regulat 99.0 3.7E-09 1.3E-13 92.4 12.2 101 2-102 182-293 (378)
186 2kat_A Uncharacterized protein 99.0 6.3E-09 2.1E-13 75.1 11.3 84 3-86 20-105 (115)
187 4a1s_A PINS, partner of inscut 99.0 3.9E-10 1.3E-14 98.9 5.8 117 3-119 224-358 (411)
188 2r5s_A Uncharacterized protein 99.0 2.3E-09 7.8E-14 83.7 9.6 82 17-98 89-172 (176)
189 3qou_A Protein YBBN; thioredox 99.0 3E-09 1E-13 89.9 11.1 90 9-98 192-283 (287)
190 3rjv_A Putative SEL1 repeat pr 98.9 4.9E-09 1.7E-13 84.6 10.7 110 3-116 51-174 (212)
191 3ro2_A PINS homolog, G-protein 98.9 8.6E-10 3E-14 92.8 6.4 120 3-122 184-321 (338)
192 3q7a_A Farnesyltransferase alp 98.9 2.9E-08 1E-12 86.2 15.8 108 14-121 66-176 (349)
193 2v5f_A Prolyl 4-hydroxylase su 98.9 1.5E-08 5.3E-13 72.5 11.6 76 2-77 5-87 (104)
194 3n71_A Histone lysine methyltr 98.9 4.2E-09 1.4E-13 95.9 10.6 117 3-119 310-450 (490)
195 3q7a_A Farnesyltransferase alp 98.9 1.6E-08 5.4E-13 87.9 13.6 115 3-117 89-214 (349)
196 1elr_A TPR2A-domain of HOP; HO 98.9 4E-09 1.4E-13 76.6 7.7 88 35-122 3-97 (131)
197 3qww_A SET and MYND domain-con 98.9 1.1E-08 3.8E-13 91.7 11.1 108 5-112 301-429 (433)
198 4f3v_A ESX-1 secretion system 98.9 4.6E-09 1.6E-13 88.6 7.8 118 5-123 105-227 (282)
199 2v5f_A Prolyl 4-hydroxylase su 98.9 4.7E-08 1.6E-12 69.9 12.0 86 35-120 4-96 (104)
200 3gw4_A Uncharacterized protein 98.9 8E-09 2.7E-13 81.4 8.8 100 2-101 66-178 (203)
201 2ooe_A Cleavage stimulation fa 98.8 2.2E-08 7.5E-13 91.5 12.4 116 3-118 322-439 (530)
202 1nzn_A CGI-135 protein, fissio 98.8 8.6E-08 3E-12 70.6 12.2 108 12-119 11-123 (126)
203 3qwp_A SET and MYND domain-con 98.8 1E-07 3.6E-12 85.3 15.1 109 4-112 289-418 (429)
204 2ooe_A Cleavage stimulation fa 98.8 1.3E-07 4.5E-12 86.4 14.9 105 3-107 273-393 (530)
205 3ly7_A Transcriptional activat 98.8 1.9E-07 6.4E-12 81.4 14.8 102 2-104 196-344 (372)
206 1hz4_A MALT regulatory protein 98.7 6.2E-08 2.1E-12 84.0 10.6 99 4-102 55-167 (373)
207 1klx_A Cysteine rich protein B 98.7 1.9E-07 6.6E-12 70.1 11.8 89 8-100 31-127 (138)
208 1hz4_A MALT regulatory protein 98.6 2.5E-07 8.5E-12 80.2 11.7 97 4-100 95-204 (373)
209 2xm6_A Protein corresponding t 98.6 3.6E-07 1.2E-11 82.6 12.2 107 3-113 329-449 (490)
210 3bee_A Putative YFRE protein; 98.6 4.2E-07 1.4E-11 63.7 9.2 68 2-69 6-76 (93)
211 2xm6_A Protein corresponding t 98.6 1.9E-06 6.5E-11 77.8 15.9 106 3-114 40-157 (490)
212 3e4b_A ALGK; tetratricopeptide 98.5 8.7E-07 3E-11 79.7 13.1 107 4-115 178-294 (452)
213 3n71_A Histone lysine methyltr 98.5 2E-07 6.9E-12 84.8 8.6 98 2-99 351-464 (490)
214 1pc2_A Mitochondria fission pr 98.5 4.8E-07 1.6E-11 68.9 9.2 79 3-81 33-116 (152)
215 3u64_A Protein TP_0956; tetrat 98.5 5.2E-07 1.8E-11 75.8 9.8 86 17-102 178-272 (301)
216 1klx_A Cysteine rich protein B 98.5 2.2E-06 7.5E-11 64.2 11.5 94 15-116 8-105 (138)
217 3e4b_A ALGK; tetratricopeptide 98.5 1.5E-06 5.1E-11 78.1 12.3 101 6-115 217-329 (452)
218 3o48_A Mitochondria fission 1 98.4 4.1E-06 1.4E-10 61.9 11.5 101 19-120 24-128 (134)
219 3mv2_B Coatomer subunit epsilo 98.4 3.7E-06 1.2E-10 71.8 12.1 116 4-120 102-227 (310)
220 4b4t_Q 26S proteasome regulato 98.3 4.4E-06 1.5E-10 73.5 11.6 96 4-99 6-164 (434)
221 1y8m_A FIS1; mitochondria, unk 98.3 2.2E-05 7.6E-10 58.7 13.5 88 33-120 36-127 (144)
222 4b4t_Q 26S proteasome regulato 98.3 4.1E-06 1.4E-10 73.7 10.1 98 4-101 57-206 (434)
223 3ffl_A Anaphase-promoting comp 98.2 9.7E-06 3.3E-10 62.3 10.5 109 4-113 22-164 (167)
224 1xi4_A Clathrin heavy chain; a 98.2 8.1E-06 2.8E-10 81.5 12.3 104 4-115 1197-1325(1630)
225 3gla_A Low molecular weight he 98.1 8.2E-06 2.8E-10 57.8 6.8 69 174-242 5-99 (100)
226 4fei_A Heat shock protein-rela 98.1 6.3E-06 2.1E-10 58.6 6.0 69 174-242 7-96 (102)
227 3mv2_B Coatomer subunit epsilo 98.1 2.9E-05 1E-09 66.2 11.1 114 4-118 138-269 (310)
228 1xi4_A Clathrin heavy chain; a 98.0 2.7E-05 9.3E-10 77.9 11.6 78 34-117 1103-1180(1630)
229 1b89_A Protein (clathrin heavy 98.0 6.2E-05 2.1E-09 67.2 12.1 103 4-116 124-253 (449)
230 1nzn_A CGI-135 protein, fissio 97.9 5E-05 1.7E-09 55.8 8.5 79 3-81 36-119 (126)
231 1b89_A Protein (clathrin heavy 97.9 1.7E-05 5.8E-10 70.8 6.3 77 6-96 98-174 (449)
232 3qwp_A SET and MYND domain-con 97.8 4.1E-05 1.4E-09 68.4 7.8 82 2-83 329-426 (429)
233 2wj5_A Heat shock protein beta 97.8 6E-05 2.1E-09 53.4 6.8 67 176-242 4-90 (101)
234 3aab_A Putative uncharacterize 97.8 4.1E-05 1.4E-09 56.3 6.1 69 175-243 26-118 (123)
235 3u64_A Protein TP_0956; tetrat 97.8 0.00029 1E-08 59.2 11.9 81 32-112 148-247 (301)
236 1y8m_A FIS1; mitochondria, unk 97.8 0.00045 1.5E-08 51.6 11.5 79 3-81 40-122 (144)
237 3o48_A Mitochondria fission 1 97.8 0.00034 1.2E-08 51.6 10.6 81 3-83 41-125 (134)
238 1gme_A Heat shock protein 16.9 97.8 7.8E-05 2.7E-09 56.8 7.4 69 174-242 44-139 (151)
239 4eld_A MJ16.5-P1, small heat s 97.7 9.3E-05 3.2E-09 57.0 7.1 67 176-242 59-152 (161)
240 2k8q_A Protein SHQ1; beta-sand 97.7 4.9E-05 1.7E-09 56.0 5.2 70 175-249 5-91 (134)
241 3qww_A SET and MYND domain-con 97.7 6.3E-05 2.1E-09 67.3 6.9 70 2-71 340-422 (433)
242 3ly7_A Transcriptional activat 97.6 0.00019 6.5E-09 62.5 8.8 67 4-71 279-345 (372)
243 3l1e_A Alpha-crystallin A chai 97.6 0.00014 4.8E-09 51.9 6.2 67 176-242 5-91 (106)
244 2ff4_A Probable regulatory pro 97.5 0.0015 5.3E-08 57.4 13.5 95 4-98 117-233 (388)
245 3q9p_A Heat shock protein beta 97.4 0.00087 3E-08 45.7 7.6 54 179-232 3-64 (85)
246 4e6h_A MRNA 3'-END-processing 97.4 0.0013 4.6E-08 62.0 11.5 98 5-102 437-536 (679)
247 4e6h_A MRNA 3'-END-processing 97.2 0.002 7E-08 60.7 11.1 106 7-112 474-583 (679)
248 3ffl_A Anaphase-promoting comp 97.2 0.0018 6.1E-08 49.7 8.5 77 3-80 64-165 (167)
249 3eud_A Protein SHQ1; CS domain 97.1 0.0017 6E-08 46.2 7.3 70 175-249 19-105 (115)
250 2y1y_A Alpha-crystallin B chai 97.1 0.00076 2.6E-08 46.5 5.4 63 180-242 3-85 (90)
251 2klr_A Alpha-crystallin B chai 97.0 0.00085 2.9E-08 52.3 5.4 67 176-242 66-152 (175)
252 1zbp_A Hypothetical protein VP 97.0 0.0086 3E-07 49.5 11.5 63 9-71 4-66 (273)
253 4h7y_A Dual specificity protei 96.9 0.021 7.1E-07 43.1 11.9 100 5-105 16-129 (161)
254 4gns_B Protein CSD3, chitin bi 96.9 0.0029 9.9E-08 60.1 8.5 61 37-97 338-398 (754)
255 2uy1_A Cleavage stimulation fa 96.7 0.035 1.2E-06 50.2 14.4 101 4-106 215-356 (493)
256 2bol_A TSP36, small heat shock 96.6 0.0051 1.7E-07 52.3 7.4 70 174-243 99-191 (314)
257 1ya0_A SMG-7 transcript varian 96.4 0.028 9.6E-07 50.9 11.3 80 38-117 154-233 (497)
258 4gns_B Protein CSD3, chitin bi 96.2 0.014 4.7E-07 55.5 8.3 59 4-62 339-397 (754)
259 2uy1_A Cleavage stimulation fa 96.1 0.13 4.6E-06 46.3 14.2 92 5-97 289-381 (493)
260 4g26_A Pentatricopeptide repea 95.6 0.27 9.3E-06 44.4 14.2 100 5-104 108-211 (501)
261 3kae_A CDC27, possible protein 95.6 0.36 1.2E-05 37.2 12.2 92 9-105 40-149 (242)
262 1ya0_A SMG-7 transcript varian 95.6 0.089 3.1E-06 47.6 10.6 79 4-82 154-232 (497)
263 4b4t_R RPN7, 26S proteasome re 95.3 0.098 3.3E-06 46.4 10.1 97 4-100 133-238 (429)
264 3txn_A 26S proteasome regulato 95.3 0.17 5.9E-06 44.3 11.4 92 7-98 104-209 (394)
265 2ff4_A Probable regulatory pro 94.4 0.19 6.7E-06 43.8 9.3 60 5-64 174-233 (388)
266 1zbp_A Hypothetical protein VP 94.4 0.23 8E-06 41.0 9.1 63 45-107 6-68 (273)
267 4g26_A Pentatricopeptide repea 93.9 1.1 3.8E-05 40.4 13.5 90 15-104 83-176 (501)
268 2bol_A TSP36, small heat shock 93.6 0.15 5E-06 43.3 6.7 52 181-232 231-294 (314)
269 4h7y_A Dual specificity protei 93.5 0.81 2.8E-05 34.4 9.7 60 12-71 70-129 (161)
270 4b4t_P 26S proteasome regulato 93.1 1.9 6.4E-05 38.3 13.3 95 5-99 140-247 (445)
271 3kae_A CDC27, possible protein 93.0 2.5 8.5E-05 32.6 12.4 64 4-67 64-145 (242)
272 4fhn_B Nucleoporin NUP120; pro 92.2 0.53 1.8E-05 47.0 9.4 92 5-96 845-964 (1139)
273 3mkq_B Coatomer subunit alpha; 91.9 2.1 7.3E-05 32.9 10.5 86 8-98 11-117 (177)
274 3mkq_A Coatomer beta'-subunit; 91.8 1 3.4E-05 42.3 10.5 46 12-62 662-707 (814)
275 3mkq_B Coatomer subunit alpha; 91.2 1.6 5.5E-05 33.6 9.1 83 4-94 36-126 (177)
276 3mkq_A Coatomer beta'-subunit; 90.6 4.4 0.00015 37.9 13.6 26 3-28 682-707 (814)
277 3spa_A Mtrpol, DNA-directed RN 90.3 5.9 0.0002 39.0 14.1 96 5-100 130-231 (1134)
278 3txn_A 26S proteasome regulato 89.1 6 0.0002 34.5 12.2 74 40-113 103-185 (394)
279 4b4t_S RPN3, 26S proteasome re 87.1 1.5 5.1E-05 39.7 7.2 66 36-103 231-303 (523)
280 2ijq_A Hypothetical protein; s 86.9 4.1 0.00014 30.8 8.5 27 6-32 36-62 (161)
281 1wy6_A Hypothetical protein ST 86.2 5.8 0.0002 29.4 8.6 51 49-99 104-154 (172)
282 3ax2_A Mitochondrial import re 84.6 2.9 0.0001 27.1 5.7 34 6-39 21-54 (73)
283 4b4t_S RPN3, 26S proteasome re 83.1 18 0.00063 32.6 12.3 59 8-68 237-302 (523)
284 2cfu_A SDSA1; SDS-hydrolase, l 81.9 3.1 0.0001 38.9 7.1 52 36-87 449-500 (658)
285 2w2u_A Hypothetical P60 katani 81.6 2.3 7.9E-05 28.3 4.5 24 6-29 23-46 (83)
286 4fhn_B Nucleoporin NUP120; pro 81.1 10 0.00034 37.8 10.9 92 10-105 820-935 (1139)
287 2v6y_A AAA family ATPase, P60 80.6 2.6 8.9E-05 28.0 4.5 11 20-30 10-20 (83)
288 1qsa_A Protein (soluble lytic 80.3 14 0.00049 34.2 10.9 51 48-98 297-347 (618)
289 4a5x_A MITD1, MIT domain-conta 79.6 2.9 0.0001 28.0 4.5 27 4-30 18-44 (86)
290 4b4t_R RPN7, 26S proteasome re 79.1 3.6 0.00012 36.2 6.3 64 36-99 131-197 (429)
291 2vkj_A TM1634; membrane protei 78.0 9.8 0.00033 25.6 6.5 28 36-63 53-80 (106)
292 2wpv_A GET4, UPF0363 protein Y 77.2 31 0.0011 28.9 11.5 27 68-94 132-158 (312)
293 2crb_A Nuclear receptor bindin 76.2 4.5 0.00015 27.4 4.5 25 4-28 17-41 (97)
294 1wfd_A Hypothetical protein 15 74.9 4.6 0.00016 27.4 4.5 11 20-30 14-24 (93)
295 4gq2_M Nucleoporin NUP120; bet 74.8 22 0.00075 34.7 11.0 96 8-107 816-935 (950)
296 3mv2_A Coatomer subunit alpha; 74.7 31 0.0011 29.0 10.4 101 5-105 117-242 (325)
297 2v6x_A Vacuolar protein sortin 74.7 4.8 0.00016 26.7 4.5 22 8-29 19-40 (85)
298 1qsa_A Protein (soluble lytic 74.2 9.8 0.00033 35.2 7.9 116 4-120 216-335 (618)
299 2cwy_A Hypothetical protein TT 73.9 9.2 0.00031 26.0 5.8 29 6-34 5-33 (94)
300 2cpt_A SKD1 protein, vacuolar 73.9 4.7 0.00016 28.7 4.5 14 18-31 15-28 (117)
301 2crb_A Nuclear receptor bindin 73.8 4.6 0.00016 27.3 4.1 25 73-97 18-42 (97)
302 3t5v_B Nuclear mRNA export pro 72.8 8 0.00027 34.4 6.7 88 16-103 140-254 (455)
303 1om2_A Protein (mitochondrial 71.9 5.7 0.0002 27.1 4.3 30 6-35 24-53 (95)
304 3t5x_A PCI domain-containing p 71.5 11 0.00037 29.5 6.6 51 3-53 15-70 (203)
305 2p58_C Putative type III secre 70.6 24 0.00081 24.5 8.3 18 76-93 46-63 (116)
306 3ax2_A Mitochondrial import re 68.9 15 0.00053 23.6 5.7 35 74-108 21-55 (73)
307 2rpa_A Katanin P60 ATPase-cont 67.2 22 0.00075 23.2 6.3 48 72-119 14-67 (78)
308 2uwj_G Type III export protein 66.9 23 0.00079 24.5 6.5 17 41-57 44-60 (115)
309 2cfu_A SDSA1; SDS-hydrolase, l 65.4 16 0.00056 34.0 7.5 53 70-122 449-501 (658)
310 2pmr_A Uncharacterized protein 65.2 5.9 0.0002 26.6 3.2 22 39-60 42-63 (87)
311 3mkr_B Coatomer subunit alpha; 64.6 63 0.0021 27.1 12.9 112 5-117 105-244 (320)
312 1wy6_A Hypothetical protein ST 64.6 41 0.0014 24.9 7.9 54 13-66 102-155 (172)
313 2oo2_A Hypothetical protein AF 64.5 6.2 0.00021 26.4 3.2 27 1-27 34-60 (86)
314 4gq2_M Nucleoporin NUP120; bet 63.6 31 0.0011 33.6 9.3 65 6-70 844-932 (950)
315 3t5x_A PCI domain-containing p 63.2 18 0.00062 28.2 6.3 35 36-70 14-48 (203)
316 2dl1_A Spartin; SPG20, MIT, st 62.7 17 0.00057 25.7 5.3 44 50-101 17-60 (116)
317 2rpa_A Katanin P60 ATPase-cont 62.6 8.6 0.00029 25.2 3.6 27 5-31 15-41 (78)
318 3re2_A Predicted protein; meni 60.3 45 0.0015 28.7 8.4 82 36-117 255-349 (472)
319 2ijq_A Hypothetical protein; s 59.8 49 0.0017 24.8 7.9 59 40-98 36-103 (161)
320 3spa_A Mtrpol, DNA-directed RN 58.6 79 0.0027 31.4 10.9 69 37-105 128-202 (1134)
321 2vkj_A TM1634; membrane protei 57.8 40 0.0014 22.6 6.5 48 70-118 53-104 (106)
322 2yhe_A SEC-alkyl sulfatase; hy 61.9 2.2 7.6E-05 39.9 0.0 52 37-88 462-513 (668)
323 4gq4_A Menin; tumor suppressor 57.1 73 0.0025 27.9 9.3 78 36-113 262-352 (489)
324 3isy_A Bsupi, intracellular pr 53.4 16 0.00054 26.0 4.0 38 180-217 15-53 (120)
325 2o8p_A 14-3-3 domain containin 52.8 85 0.0029 24.9 9.5 52 13-64 136-196 (227)
326 3lpz_A GET4 (YOR164C homolog); 52.2 1.1E+02 0.0037 25.9 12.1 27 68-94 134-160 (336)
327 3u84_A Menin; MLL, JUND, ledgf 51.4 72 0.0025 28.0 8.3 78 36-113 277-367 (550)
328 2rkl_A Vacuolar protein sortin 50.4 30 0.001 20.7 4.2 28 3-30 21-48 (53)
329 4b4t_P 26S proteasome regulato 49.9 1.3E+02 0.0045 26.2 16.4 75 36-110 137-220 (445)
330 1om2_A Protein (mitochondrial 48.9 26 0.00089 23.8 4.3 28 75-102 25-52 (95)
331 2w2u_A Hypothetical P60 katani 46.8 58 0.002 21.3 6.1 12 91-102 47-58 (83)
332 3qnk_A Putative lipoprotein; a 44.8 82 0.0028 28.1 8.3 64 36-99 109-211 (517)
333 4a5x_A MITD1, MIT domain-conta 44.5 37 0.0013 22.4 4.6 17 47-63 27-43 (86)
334 3hdx_A SUSD homolog, SUSD supe 44.1 73 0.0025 28.0 7.8 64 36-99 112-226 (478)
335 2v6y_A AAA family ATPase, P60 43.9 65 0.0022 21.0 6.4 19 86-104 34-52 (83)
336 3re2_A Predicted protein; meni 43.9 46 0.0016 28.6 5.9 44 21-64 276-324 (472)
337 3t5v_B Nuclear mRNA export pro 43.3 38 0.0013 30.0 5.7 59 10-68 184-253 (455)
338 4b4t_O 26S proteasome regulato 41.2 1.2E+02 0.0042 25.9 8.6 87 12-98 86-197 (393)
339 2e2a_A Protein (enzyme IIA); h 41.1 36 0.0012 23.5 4.2 29 2-30 20-48 (105)
340 3u84_A Menin; MLL, JUND, ledgf 40.8 54 0.0018 28.8 5.9 45 20-64 297-346 (550)
341 3myv_A SUSD superfamily protei 40.6 79 0.0027 27.6 7.5 29 70-98 190-218 (454)
342 1wcr_A PTS system, N, N'-diace 40.3 38 0.0013 23.3 4.2 29 2-30 18-46 (103)
343 4aez_C MAD3, mitotic spindle c 39.8 1.4E+02 0.0047 23.6 12.1 63 54-116 132-197 (223)
344 1wfd_A Hypothetical protein 15 39.6 48 0.0016 22.2 4.6 8 55-62 15-22 (93)
345 2v6x_A Vacuolar protein sortin 39.5 49 0.0017 21.6 4.6 16 48-63 25-40 (85)
346 2cpt_A SKD1 protein, vacuolar 38.7 44 0.0015 23.5 4.4 18 87-104 42-59 (117)
347 3k1s_A PTS system, cellobiose- 38.2 42 0.0014 23.4 4.2 28 2-29 22-49 (109)
348 2dl1_A Spartin; SPG20, MIT, st 38.0 96 0.0033 21.8 6.0 46 15-68 16-61 (116)
349 2xze_A STAM-binding protein; h 37.9 45 0.0015 24.5 4.5 29 2-30 40-68 (146)
350 3myv_A SUSD superfamily protei 37.7 80 0.0027 27.6 7.0 14 36-49 111-124 (454)
351 2jpu_A ORF C02003 protein; sol 37.3 49 0.0017 23.8 4.5 30 2-31 7-36 (129)
352 3kez_A Putative sugar binding 36.9 91 0.0031 27.3 7.3 29 70-98 196-224 (461)
353 3l8r_A PTCA, putative PTS syst 36.7 45 0.0015 23.7 4.2 28 2-29 37-64 (120)
354 3ph0_C ASCG; type III secretio 36.7 71 0.0024 19.4 6.0 42 48-90 18-60 (61)
355 3kez_A Putative sugar binding 36.4 85 0.0029 27.5 7.0 14 36-49 117-130 (461)
356 4gq4_A Menin; tumor suppressor 36.1 70 0.0024 28.1 5.9 44 21-64 283-331 (489)
357 3i4g_A SUSD-like carbohydrate 36.0 1.2E+02 0.0039 27.3 7.9 63 36-98 123-226 (528)
358 3lew_A SUSD-like carbohydrate 35.6 1E+02 0.0035 27.3 7.4 30 70-99 203-232 (495)
359 3otn_A SUSD superfamily protei 35.5 93 0.0032 27.4 7.1 63 36-98 116-225 (482)
360 3lew_A SUSD-like carbohydrate 35.0 88 0.003 27.7 6.9 14 36-49 119-132 (495)
361 3mcx_A SUSD superfamily protei 33.8 95 0.0032 27.3 6.9 30 70-99 202-231 (477)
362 3bqo_A Telomeric repeat-bindin 33.0 34 0.0012 26.7 3.2 111 3-113 23-160 (211)
363 3mcx_A SUSD superfamily protei 31.8 97 0.0033 27.2 6.6 14 36-49 123-136 (477)
364 2yhe_A SEC-alkyl sulfatase; hy 35.8 11 0.00038 35.2 0.0 53 71-123 462-514 (668)
365 2a9u_A Ubiquitin carboxyl-term 28.1 83 0.0029 23.0 4.5 30 2-31 42-71 (144)
366 2djm_A Glucoamylase A; beta sa 27.6 1.5E+02 0.0052 20.3 5.9 64 181-246 17-95 (106)
367 4a1g_A Mitotic checkpoint seri 27.6 1.8E+02 0.0063 21.3 6.7 48 54-101 83-132 (152)
368 2ynq_A ESSB; membrane protein, 27.3 1.9E+02 0.0066 21.5 8.5 83 4-94 10-97 (161)
369 2npu_A FKBP12-rapamycin comple 26.9 1.7E+02 0.0059 20.8 5.9 12 14-25 52-63 (126)
370 3v2d_T 50S ribosomal protein L 26.8 1.6E+02 0.0054 21.6 5.7 53 179-232 22-84 (146)
371 2kxo_A Cell division topologic 26.1 1E+02 0.0034 20.8 4.3 24 194-217 57-84 (95)
372 2ftc_K 39S ribosomal protein L 25.7 1.6E+02 0.0054 20.0 6.1 52 179-232 4-65 (98)
373 3ckc_A SUSD; TPR repeat, carbo 25.4 3.4E+02 0.012 23.7 10.2 79 20-98 104-231 (527)
374 3qnk_A Putative lipoprotein; a 24.9 1.9E+02 0.0064 25.7 7.3 30 36-65 182-211 (517)
375 2ymb_A MITD1, MIT domain-conta 24.1 16 0.00056 29.7 0.0 15 18-32 20-34 (257)
376 2cwy_A Hypothetical protein TT 23.8 1.7E+02 0.0057 19.5 5.3 56 41-98 6-67 (94)
377 3uzd_A 14-3-3 protein gamma; s 22.9 2.9E+02 0.01 22.1 7.3 9 50-58 188-196 (248)
378 3snx_A SUSD homolog, putative 22.7 1.6E+02 0.0054 25.8 6.2 47 53-99 161-220 (460)
379 3vtt_A Envelope protein E; imm 22.7 18 0.00061 25.1 -0.0 13 173-185 93-105 (107)
380 2br9_A 14-3-3E, 14-3-3 protein 22.6 1.3E+02 0.0046 23.9 5.1 14 49-62 186-199 (234)
381 3iqu_A 14-3-3 protein sigma; s 22.4 2.9E+02 0.0099 21.9 7.0 14 49-62 189-202 (236)
382 2q1f_A Chondroitinase; alpha p 22.3 1.4E+02 0.0048 29.4 6.2 49 176-224 958-1012(1022)
383 3bu8_A Telomeric repeat-bindin 22.1 2.9E+02 0.01 21.8 13.3 111 3-113 17-157 (235)
384 2npm_A 14-3-3 domain containin 22.0 2.2E+02 0.0077 23.0 6.4 44 20-63 174-225 (260)
385 2qx5_A Nucleoporin NIC96; mRNA 21.8 2.2E+02 0.0076 26.4 7.1 31 72-103 538-570 (661)
386 3jq1_A SUSD superfamily protei 21.2 1.6E+02 0.0056 25.8 6.0 63 36-98 110-208 (481)
387 2npu_A FKBP12-rapamycin comple 21.2 2.3E+02 0.0078 20.1 6.1 77 39-118 43-124 (126)
388 1ixm_A SPO0B, protein (sporula 21.1 95 0.0032 23.8 3.9 43 22-64 18-60 (192)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=2.7e-21 Score=144.98 Aligned_cols=112 Identities=27% Similarity=0.476 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
|+.+.++|+.+++.|+|++|+.+|+++|+++|.++.+++++|.||..+|++++|+.+|++++.++|.+..+|+++|.++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.+|++++|+.+|+++++++|++..+...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999888776
No 2
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.82 E-value=2.9e-20 Score=143.96 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=110.8
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHc---
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAE-----LFADRAQASIKLQNFTEAVADANRAIEL--- 65 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~l--- 65 (262)
||..++..|+.++..|+|++|+..|++||+++|+ +.. +|.++|.|+..+|+|++|+.+|+++|.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4678899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 66 ----EPSMSKAY----WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 66 ----~p~~~~a~----~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.+....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~ 153 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999998877777777766665543
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.82 E-value=2.9e-19 Score=138.80 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
+..+...|+.++..|+|.+|+..|.++|.. +|.+..+++++|.||+++|+|++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77778999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHhhcc
Q 024778 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEETGE 123 (262)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~l~~~~~~ 123 (262)
.++|.+..+|+++|.++..+|+|++|+.+|++++.++|++. .+...+..+...++.....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 7888999999998876554
No 4
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.3e-19 Score=130.88 Aligned_cols=116 Identities=31% Similarity=0.460 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+..|.+++..+|+++.++.++|.+|..+|++++|+.++++++.++|.+..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccC------CCCHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLA------PGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~------p~~~~~~~~l~~~~~~l 117 (262)
.+|++++|+.+|++++.++ |++..+...+..+..++
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999 99999999988887654
No 5
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.80 E-value=2.2e-18 Score=133.97 Aligned_cols=122 Identities=26% Similarity=0.372 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|.+++.++|+++.+++++|.+|+.+|++++|+.+|++++.++|.+..+|+++|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHH--HHHHHHHHHHHHHHhhcc
Q 024778 82 KLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGE 123 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~~~~~ 123 (262)
.+|++++|+.+|++++.++|++.. +...+..+..++++....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 134 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRG 134 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887 667777788888766543
No 6
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=99.80 E-value=9e-20 Score=129.29 Aligned_cols=80 Identities=66% Similarity=1.064 Sum_probs=73.7
Q ss_pred CcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeec
Q 024778 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLK 240 (262)
Q Consensus 172 ~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~ 240 (262)
++++|+|||+.+.|+|+|+++|++++++.|+|++++|+|++..++|..|.++++||++|+| ++ |+|+|+
T Consensus 1 ~~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 80 (92)
T 2xcm_C 1 AKYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA 80 (92)
T ss_dssp CCSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred CCccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence 3689999999999999999999999999999999999999887778899999999999999 33 999999
Q ss_pred CCCCCCCccCC
Q 024778 241 GLIHHPFLDHQ 251 (262)
Q Consensus 241 ~~~~W~~l~~~ 251 (262)
+++.|++|+++
T Consensus 81 ~~~~W~~L~~~ 91 (92)
T 2xcm_C 81 DIITWASLEHG 91 (92)
T ss_dssp SSCCCSCSBTT
T ss_pred CCCcchhcccC
Confidence 99999999864
No 7
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.79 E-value=2.2e-19 Score=134.99 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=73.4
Q ss_pred cccccccCC-CCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCC------------eeeecccccccccc---ce--
Q 024778 173 KYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE------------AYHFQPRLFGKVYM---AY-- 234 (262)
Q Consensus 173 ~~~~~~~q~-~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~L~~~i~~---~~-- 234 (262)
.+||+|||+ .+.|+|+|++|++++++++|+|++++|+|++...++. .|.++++||++|+| +|
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v 98 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF 98 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEE
Confidence 589999999 9999999999999999999999999999999877654 79999999999999 33
Q ss_pred ------EEEeecCCCCCCCccCCC
Q 024778 235 ------ILLFLKGLIHHPFLDHQD 252 (262)
Q Consensus 235 ------i~l~K~~~~~W~~l~~~~ 252 (262)
|+|+|++++.|+.|+...
T Consensus 99 ~~~kIeI~L~K~e~~~W~~L~~~~ 122 (134)
T 1wh0_A 99 TASRIDICLRKRQSQRWGGLEAPA 122 (134)
T ss_dssp CSSEEEEEEEESSSCCCSCSBCCC
T ss_pred eCCEEEEEEEECCCCccccccccC
Confidence 999999999999999764
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.78 E-value=3.4e-18 Score=128.02 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW 74 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~ 74 (262)
|..+.++|+.+++.|+|++|+.+|++||.++|+++.++.++|.||+.+|+|++|+.++++++.++|.+ ..+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999998765 36899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
++|.++..+|++++|+.+|++++...|+ ++....+..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 9999999999999999999999999885 4454444443
No 9
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=7.7e-18 Score=130.24 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+..|++++.++|+++.+|+++|.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCH
Q 024778 82 KLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
.+|++++|+.+|++++++.|+.+
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999765
No 10
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=1.4e-17 Score=128.00 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+..|.+++..+|+++.+++++|.+|..+|++++|+..|++++.++|+++.+++.+|.++..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+|++++|+.+|+++++++|+++....+...+...+....
T Consensus 102 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999888777777777776543
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.76 E-value=1.6e-17 Score=126.24 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+..|.+++..+|+++.+++.+|.+|..+|++++|+..|++++.++|+++.+++.+|.++..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+|++++|+.+|++++.++|+++.......++...++..
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777777766654
No 12
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.76 E-value=1e-18 Score=128.77 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=75.3
Q ss_pred CCcccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEee
Q 024778 171 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFL 239 (262)
Q Consensus 171 ~~~~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K 239 (262)
.+.++|+|||+.+.|+|+|+++|++++++.|+|++++|+|++...+|..|.++++||++|+| ++ |+|+|
T Consensus 7 ~~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K 86 (114)
T 1rl1_A 7 QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK 86 (114)
T ss_dssp -CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred CCCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999999887778899999999999999 33 99999
Q ss_pred cCCCCCCCccCCCCC
Q 024778 240 KGLIHHPFLDHQDPP 254 (262)
Q Consensus 240 ~~~~~W~~l~~~~~~ 254 (262)
++++.|+.|+..+..
T Consensus 87 ~~~~~W~~L~~~~~~ 101 (114)
T 1rl1_A 87 PEAVRWEKLEGQGDV 101 (114)
T ss_dssp SSCCCCSSSBTTC--
T ss_pred CCCCcCccccccCCc
Confidence 999999999876543
No 13
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=128.24 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=71.3
Q ss_pred ccccccCCCCeEEEEEEecCC---CCcceEEEEeeeEEEEEEecCCCCeeeecc-cccccccc---ce--------EEEe
Q 024778 174 YRHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKVYM---AY--------ILLF 238 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~---~~--------i~l~ 238 (262)
.+|+|||+.++|+|+|+++|+ +++++.|+|++++|+|.+...+|..|.+++ +||++|+| +| |+|+
T Consensus 21 ~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L~ 100 (127)
T 1x5m_A 21 SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCR 100 (127)
T ss_dssp CSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEEE
T ss_pred cEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEEE
Confidence 389999999999999999999 899999999999999999877788999999 59999999 33 9999
Q ss_pred ecCCC-CCCCccCC
Q 024778 239 LKGLI-HHPFLDHQ 251 (262)
Q Consensus 239 K~~~~-~W~~l~~~ 251 (262)
|++++ .|+.|+..
T Consensus 101 K~~~~~~W~~L~~~ 114 (127)
T 1x5m_A 101 KKVENTRWDYLTQV 114 (127)
T ss_dssp CSSSSCCCSSSBHH
T ss_pred ECCCCCCCCccccc
Confidence 99987 99999753
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=8.8e-18 Score=129.33 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..|..++..|+|++|+.+|+++|+++|+++.++.++|.+|..+|++++|+.+|++++.++|++..+++.+|.++..+
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHH
Q 024778 84 EEYETAKVA-LEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 84 g~~~~A~~~-~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
|++.+|... ++++++++|+++.+......+...
T Consensus 113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 999887765 599999999999887777665543
No 15
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.74 E-value=8.5e-17 Score=120.40 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|.+++..+|+++.+++++|.++..+|++++|+.++++++.++|.+..+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCC-----CHHHHHHHHHHHHHHHHhh
Q 024778 82 KLEEYETAKVALEKGASLAPG-----DSRFTNLIKECEERIAEET 121 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~~~l~~~~ 121 (262)
.+|++++|+.+|++++.++|+ +..+...+..+..+.....
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 7778888888887776543
No 16
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.73 E-value=2.1e-16 Score=126.56 Aligned_cols=122 Identities=22% Similarity=0.302 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----------------ELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
+..+...|..++..|+|++|+.+|.+++...|.++ .++.++|.+|+.+|++++|+.++++++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999887 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|.+..+++++|.++..+|++++|+.+|++++.++|++..+...+..+...+++....
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877665
No 17
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.72 E-value=1.5e-16 Score=118.06 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..|..++..|++++|+..|.+++..+|+++.+++.+|.++..+|++++|+..|++++.++|++..+++.+|.++..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhccCCCCHH
Q 024778 84 EEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~ 105 (262)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999997653
No 18
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=2.1e-16 Score=127.89 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHc
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----------------RAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
+..++.+|..++..|+|++|+.+|.+++..+|+++.+++. +|.+|..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988888765544
No 19
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=3.1e-16 Score=136.49 Aligned_cols=122 Identities=20% Similarity=0.351 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
+..+..+|..++..|+|++|+.+|.+++.++|.+ ..+++++|.||+++|+|++|+.+|++++.++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3578899999999999999999999999999998 6999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|.+..+++++|.++..+|++++|+.+|+++++++|++..+...+..+...+++...+
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888877765443
No 20
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=7.2e-16 Score=111.27 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+..|.+++..+|.+..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.+|++++|...|++++.++|++..+...+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999988888777653
No 21
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.70 E-value=2.7e-16 Score=142.39 Aligned_cols=121 Identities=22% Similarity=0.324 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
+..++.+|+.++..|+|.+|+.+|.+|+.++|.+ ..+++++|.||+++|+|++|+.+|++++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
|++..+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+++...
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888876544
No 22
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-16 Score=115.59 Aligned_cols=116 Identities=28% Similarity=0.409 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
+|++++|+.+|++++.++|.+..+...+..+...++
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999888888888876553
No 23
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.69 E-value=8.2e-16 Score=113.75 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYW 74 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~ 74 (262)
|+..++..|..++..|+|++|+..|.+++..+|++. .+++.+|.+++.+|++++|+..+++++..+|++ ..+++
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 466789999999999999999999999999999988 799999999999999999999999999999999 89999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.+|.++..+|++++|+..|++++...|+++.+......+..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999876665555443
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=5.6e-16 Score=126.24 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++++.++|++..+++.+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred h-----------hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 L-----------EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 l-----------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+ |++++|+..|+++++++|++..+...++.+...+++..
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 8 88888888888888888888877777777766655443
No 25
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.69 E-value=2.1e-15 Score=110.73 Aligned_cols=117 Identities=33% Similarity=0.473 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+.+|.+++..+|++..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
+|++++|+.+|++++.++|++..+...+..+...+++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998888888877754
No 26
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=3.6e-16 Score=148.88 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+.+.++|..+...|+|++|+.+|++||+++|+++.+++++|.+|..+|++++|+..|++|++++|++..+|+++|.++..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666655556666666666
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus 90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 6666666666666665555555555555555444443
No 27
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-15 Score=114.19 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..++..|..++..|+|++|+.+|.+++..+|++ ..++.++|.+|..+|++++|+..+++++.++|.+..+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4578899999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
++..+|++++|+.+|++++.++|++..+...+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999998888777664
No 28
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.67 E-value=6.4e-16 Score=136.37 Aligned_cols=122 Identities=23% Similarity=0.435 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE----------------ISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
+..+...|+.++..|+|++|+.+|++||+ .+|.+..++.++|.||+++|+|++|+.++++++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999 77888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|.+..+++++|.+|..+|++++|+.+|+++++++|++..+...+..+...+++...+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876554
No 29
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=4.6e-15 Score=113.92 Aligned_cols=112 Identities=32% Similarity=0.513 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+...|..++..|+|++|+..|.+++..+|.+..++.++|.++..+|++++|+..+.+++.++|.+..+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.+|++++|+.+|++++.++|.+..+...+..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999998877665555
No 30
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.66 E-value=3.3e-15 Score=109.77 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW 74 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~ 74 (262)
+..++..|..++..|+|++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..+++++.++|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999998877 88999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+|.++..+|++++|+.+|++++.+.| ++.....+..+...++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 688888888888887654
No 31
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.66 E-value=9.3e-17 Score=123.55 Aligned_cols=115 Identities=10% Similarity=-0.094 Sum_probs=105.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~ 86 (262)
.+|..+...|++++|+..|.+++..+|.++..++.+|.+|+.+|+|++|+..|++++.++|++..+|+.+|.++..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 35777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
++|+.+|+++++++|++..+...++.+...+++..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999998888776543
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=1.8e-15 Score=144.09 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+.++|..+...|++++|+.+|++||+++|+++.+++++|.+|..+|++++|+..|+++++++|++..+|+++|.+|.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.+|++++|+.+|+++++++|++..+...++.+...+++..
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999999999988888877665443
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=5.3e-15 Score=116.33 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+++.|..++..|+|++|+..|+++|+++|+++.++..+|.+|..+|++++|+..+.+++...|.+..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999988888887777776665444444444444
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
..++++.|...+.+++.++|.+..+...++.+...
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 34
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=3.5e-15 Score=121.52 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
+..++..|..++..|+|++|+..|++++..+| .+..+++++|.++..+|++++|+.++++++.++|.+..+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 35789999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHH-------HHHHHHHHHHHHHh
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRF-------TNLIKECEERIAEE 120 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~-------~~~l~~~~~~l~~~ 120 (262)
..+|++++|+..|++++.++|++..+ ...++.+...+++.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 99999999999999999999999854 44555555444433
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3.9e-15 Score=121.21 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHcCCCCHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-----------QNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~l~p~~~~ 71 (262)
..++..|..++..|++++|+..|+++++++|+++.+++++|.++..+ |++++|+..+++++.++|++..
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~ 119 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH
Confidence 45677888888888888888888888888888888888888888888 8888888888888888888888
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+++.+|.++..+|++++|+.+|+++++++ +++.+...++.+...+++...+
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888888888888888 7777777777777766655443
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.7e-15 Score=134.17 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
..+...|..+...|++++|+.+|+++|.++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+++|.++.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3456666666667777777777777777777777777777777777775 777777777777777777777777777777
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+|++++|+.+|++++.++|++..++..++.+...++..
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 777777777777777777777766666666666666544
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.6e-14 Score=105.02 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|++++|+.+|.+++...|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.+|++++|...|++++.++|++..+...+..+....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999888888776543
No 38
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.64 E-value=2.6e-15 Score=115.94 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=96.8
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
.-+.+.|++|+..|.+++.++|+++.+|+++|.++..++++ ++|+..|++|+.++|++..+|+++|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999875 59999999999999999999999999999
Q ss_pred Hhh-----------cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 82 KLE-----------EYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg-----------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.+| +|++|+.+|+++++++|++..++..+..+.+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 885 899999999999999999998887777665443
No 39
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=3.7e-16 Score=119.85 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=69.7
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEe-eeEEEEEEecCCCCeeeecccccccccc--ce--------EEEeecCC
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPGEEAYHFQPRLFGKVYM--AY--------ILLFLKGL 242 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~L~~~i~~--~~--------i~l~K~~~ 242 (262)
.+++|||+.+.|+|+|+++++ ++++|+|+ +++|+|++..++|..|.++++||++|+| +| |+|+|+++
T Consensus 5 P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~IdpeS~~~v~~~kIei~L~K~e~ 82 (150)
T 2kmw_A 5 PEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYRKNVGLRNIIFSIQKEER 82 (150)
T ss_dssp CCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEESSSEEEEEEECCS
T ss_pred CcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhcccccceEEecCCEEEEEEEECCC
Confidence 479999999999999999997 68999999 7999999875667899999999999999 33 99999999
Q ss_pred CCCCCccCCC
Q 024778 243 IHHPFLDHQD 252 (262)
Q Consensus 243 ~~W~~l~~~~ 252 (262)
+.|+.|+...
T Consensus 83 ~~W~rL~k~~ 92 (150)
T 2kmw_A 83 SWWTRLLKSE 92 (150)
T ss_dssp SCCSCSBSCC
T ss_pred CcCcccccCC
Confidence 9999998764
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=4e-15 Score=131.81 Aligned_cols=116 Identities=7% Similarity=-0.032 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
+..+..+|..+...|+ |++|+.+|+++|.++|++..+|+++|.++..+|++++|+.+|++++.++|++..+|+.+|.++
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence 3578899999999996 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888887773
No 41
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.61 E-value=9.4e-16 Score=133.55 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----------------ELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+..++..|+.++..|+|.+|+.+|.+++...|++. .+++++|.||+++|+|++|+.+|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999877 3899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 65 l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
++|.+..+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+......
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888887655543
No 42
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=99.61 E-value=1.3e-15 Score=113.76 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=68.4
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec-CCCCeeeecccccccccc---ce--------EEEeecCC
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKVYM---AY--------ILLFLKGL 242 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~~ 242 (262)
+++|||+.+.|+|+|+++++ +++.|+|++++|+|++.. .+|..|.++++||++|+| ++ |+|+|+++
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~~ 82 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES 82 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECCC
Confidence 79999999999999999996 799999999999999764 457789999999999999 33 99999987
Q ss_pred C-CCCCccCCCC
Q 024778 243 I-HHPFLDHQDP 253 (262)
Q Consensus 243 ~-~W~~l~~~~~ 253 (262)
+ .|++|.....
T Consensus 83 ~~~W~rL~~~~~ 94 (125)
T 1ejf_A 83 GQSWPRLTKERA 94 (125)
T ss_dssp TCCCSSSBSSCC
T ss_pred CCCCCceecCCC
Confidence 5 9999987653
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=1.8e-14 Score=122.12 Aligned_cols=102 Identities=28% Similarity=0.416 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++.+|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+.++++++.++|++..+++++|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCC
Q 024778 82 KLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.+|++++|+..|++++.++|++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999865
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=2.7e-14 Score=116.26 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-------HHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-------KAYWRK 76 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a~~~~ 76 (262)
.++..|..++..|+|++|+.+|.+++..+|++..++..+|.+|..+|++++|+..+++++.++|++. .+++.+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999999999999999999999998 679999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHh
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIAEE 120 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~l~~~ 120 (262)
|.++..+|++++|+.+|+++++++|+ +..+...++.+....+..
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 888888888887777655
No 45
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=8.7e-14 Score=112.41 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=93.2
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL---- 83 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l---- 83 (262)
.|..++..|+|++|+..|.++++++|++..+++++|.+|..+|++++|+.+|++++.++|++..+++.+|.+++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999988888888776543
Q ss_pred -------------------------------hcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 84 -------------------------------EEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 84 -------------------------------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
|+|++|+.+|+++++++|+.. ....+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~ 200 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 457889999999999999743 444455543
No 46
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.58 E-value=1.3e-14 Score=103.69 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~ 80 (262)
..+...|..++..|+|++|+.+|.+++..+|.+..++.++|.++..+|++++|+..+++++.++|. +..+++.+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHh-hcHHHHHHHHHHhhccCCCCH
Q 024778 81 MKL-EEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 81 ~~l-g~~~~A~~~~~~a~~l~p~~~ 104 (262)
..+ |++++|+.+|++++...|.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999 999999999999999998753
No 47
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.58 E-value=2.9e-15 Score=109.84 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=89.4
Q ss_pred HhhCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHH
Q 024778 14 IDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
..|+|++|+.+|.+++.. +|++..+++++|.+|..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHH
Q 024778 91 VALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..|++++.+.|+++.+......+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999998776554443
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=7.9e-14 Score=109.55 Aligned_cols=121 Identities=21% Similarity=0.160 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+..+.+++...|++..++..+|.++...++++.|+..+.+++.++|.+..+++.+|.++..
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|++++|+.+|+++++++|++..+...++.+...+++...+
T Consensus 120 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999998888888888877765544
No 49
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=7.2e-14 Score=109.30 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
..+...|..++..|+|++|+.+|.+++..+|+++.++..+|.+ +...|++ ++|+..+++++.++|.+..+++.+|.+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD 124 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999 8899999 999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
++.+|++++|+..|++++.++|++......+..+..
T Consensus 125 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 125 AFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 999999999999999999999998766555544443
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.56 E-value=2e-15 Score=116.57 Aligned_cols=110 Identities=10% Similarity=-0.106 Sum_probs=100.8
Q ss_pred HhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHH
Q 024778 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~ 93 (262)
..+++-.+...|.+++.++|++..+++.+|.+++.+|+|++|+..|++++.++|.+..+|+.+|.++..+|+|++|+.+|
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34444555567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 94 EKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 94 ~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
++++.++|+++.+...++.+...+++...+
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999888876554
No 51
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.56 E-value=9.9e-15 Score=132.90 Aligned_cols=122 Identities=29% Similarity=0.447 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+..+|..++..|+|++|+.+|++|++.+|+++.++.++|.+|..+|++++|+.++++++.++|.+..+++++|.++..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHH--HHHHHHhhccc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC--EERIAEETGEL 124 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~--~~~l~~~~~~~ 124 (262)
+|++++|+.+|+++++++|++..+...+..+ ....++..++.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888888 45556655554
No 52
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=1.9e-13 Score=100.28 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+...|..++..|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 1 a~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
..|++++|+..|++++...|.+......+..+....++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence 999999999999999999999888777777766655443
No 53
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.55 E-value=6.9e-14 Score=116.33 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (262)
+..++..|..++..|+|++|+..|.+++..+|.+ ..+++.+|.+|+.+|++++|+..|++++.+.|++ ..+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4578999999999999999999999999999999 8999999999999999999999999999998854 679999
Q ss_pred HHHHHHH--------hhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 76 KATACMK--------LEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 76 ~g~~~~~--------lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+|.+++. +|++++|+..|++++..+|++..+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 9999999 9999999999999999999987655
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=5e-13 Score=107.15 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH------------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~------------ 70 (262)
..++..|..++..|+|++|+..|.+++..+|++..+++++|.+|..+|++++|+.++++++.+.|.+.
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 117 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence 35666777777777777777777777777777777777777777777777777777777777666554
Q ss_pred ----HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 71 ----KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 71 ----~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
.+++.+|.++..+|++++|+.+|++++.++|++.
T Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 6777777777777777777777777777777653
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.1e-13 Score=111.60 Aligned_cols=111 Identities=32% Similarity=0.470 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|+|++|+.+|.+++..+|.++.++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccC------CCCHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLA------PGDSRFTNLIKEC 113 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~------p~~~~~~~~l~~~ 113 (262)
+|++++|..+|+++++++ |++..+...+..+
T Consensus 220 ~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999 8888777776654
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=5.1e-13 Score=103.54 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++...|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
+|++++|+.+|++++...|.+..+...++.+....++..
T Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 888888888888888888888777777777766655443
No 57
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=1.7e-13 Score=109.95 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+..|.+++ ++ ++.+++++|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 357899999999999999999999996 33 789999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDS----------------RFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~l~~~~~~ 123 (262)
+|++++|+.+|++++.+.|++. .+...++.+...+++...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999998876 7777788777766654433
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=5.3e-13 Score=110.60 Aligned_cols=111 Identities=20% Similarity=0.095 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
+|++++|+..|++++.++|++.....++..+
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999998655554433
No 59
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-14 Score=103.05 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------SKAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~ 75 (262)
+..++..|..++..|+|++|+..|++++..+|+++.++.++|.+|..+|++++|+.++++++.++|++ ..++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999998 888999
Q ss_pred HHHHHHHhhcHHHHHHHHHH
Q 024778 76 KATACMKLEEYETAKVALEK 95 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~ 95 (262)
+|.++..+|+++.|+..|++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 99999999988877766553
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.6e-13 Score=124.67 Aligned_cols=122 Identities=15% Similarity=0.032 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHh---------hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHc
Q 024778 3 TDLEKKAKEAFID---------DYFELAYDLYSQAIEISPNSAELFADRAQASIKL--------QNFTEAVADANRAIEL 65 (262)
Q Consensus 3 ~~l~~~g~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~l 65 (262)
..+...|..++.. |+|++|+.+|.++++++|+++.+++++|.+|..+ |++++|+..|++++.+
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 4577888899999 9999999999999999999999999999999999 9999999999999999
Q ss_pred CC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc
Q 024778 66 EP---SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (262)
Q Consensus 66 ~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (262)
+| .+..+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+++...+.
T Consensus 251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999988888888887765553
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=3.6e-13 Score=124.62 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+...|..++..|+|++|+.+|+++++.+|++..++.++|.+|..+|++++|+..+++++.++|++..+++.+|.++.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.+|++++|+.+|+++++++|++..+...+..+...+
T Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999888888887777
No 62
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=99.50 E-value=7.1e-14 Score=104.10 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=70.1
Q ss_pred ccccccCCCCeEEEEEEec-CC-CCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---------EEEee
Q 024778 174 YRHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY---------ILLFL 239 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k-~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~---------i~l~K 239 (262)
.+|.|+|+.+.|+|+|.++ |+ ++++|.|+|++++|+|.+....|..+.+.++||++|+| +| |+|+|
T Consensus 20 ~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~K 99 (124)
T 1wgv_A 20 ENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSK 99 (124)
T ss_dssp SSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECB
T ss_pred CcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEEE
Confidence 3799999999999999976 87 89999999999999999876557778899999999999 23 99999
Q ss_pred cCCCCCCCccCCCC
Q 024778 240 KGLIHHPFLDHQDP 253 (262)
Q Consensus 240 ~~~~~W~~l~~~~~ 253 (262)
++...|++|...+.
T Consensus 100 ~~~~~W~~L~~~~~ 113 (124)
T 1wgv_A 100 VGEYWWNAILEGEE 113 (124)
T ss_dssp SSSCCCSCSBTTSC
T ss_pred CCCCCCcCcccCCC
Confidence 99889999986543
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=2.3e-13 Score=123.60 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~-~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
+..++.+|..++..|+| ++|+.+|.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|+ ..+++.+|.++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 45788999999999999 99999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHh---------hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 81 MKL---------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 81 ~~l---------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
..+ |++++|+.+|+++++++|++..++..++.+...+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999888888887766
No 64
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=5.1e-13 Score=115.51 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+...|..++..|++++|+.+|.+++..+|+++.++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCC-----------HHHHHHHHHHHHHHHHhhcc
Q 024778 82 KLEEYETAKVALEKGASLAPGD-----------SRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~-----------~~~~~~l~~~~~~l~~~~~~ 123 (262)
.+|++++|+..|++++.+.|++ ..++..+..+...+++...+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999999999999999887 77888888888888766544
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=7.2e-14 Score=132.48 Aligned_cols=120 Identities=10% Similarity=-0.062 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|++++.++|++..+++.+|.++..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|+|++ +.+|+++++++|++..+...++.+...+++...+
T Consensus 514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999 9999999999999999988888888887766554
No 66
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=8e-14 Score=103.96 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=88.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHH
Q 024778 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (262)
Q Consensus 27 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~ 106 (262)
++..++|+.+..+.++|.+|++.|+|++|+..|++++.++|.+..+|+.+|.++..+|++++|+.+|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 024778 107 TNLIKECEERIAEETGE 123 (262)
Q Consensus 107 ~~~l~~~~~~l~~~~~~ 123 (262)
...++.+...+++...+
T Consensus 84 ~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 84 YIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 99999998888766554
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=4.5e-13 Score=103.88 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
.|++++|...|++++..+|.+..+...++.+....++...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence 9999999999999999999999888888877766655433
No 68
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.7e-13 Score=109.54 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE--------------------------ISPNSAELFADRAQASIKLQNFTEA 55 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~A 55 (262)
+..+...|..+...|++++|+.+|.+++. .+|.+..++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 35678899999999999999999999999 6667788999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 56 VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 56 ~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|++..+...++.+...+++...+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888777655443
No 69
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=1.9e-12 Score=110.81 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
....|..++..|++++|+..|.+++...|++. .++..+|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45668999999999999999999999999987 44667999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
..+|++++|..+|+++++++|++..+...+..+...++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888754
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.4e-12 Score=106.09 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..++..|++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++..+
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
|++++|+..|++++.+.|++..+...++.+....++.
T Consensus 139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 7777777777777777777776666666665555543
No 71
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1e-12 Score=106.88 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++...|.+..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
.|++++|+..|++++..+|++..+...++.+...+++...
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999888888888777665443
No 72
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.48 E-value=9.9e-13 Score=95.62 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 19 ~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
+.|+..|.+++..+|+++.+++++|.+|..+|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHHHHhhc
Q 024778 99 LAPG--DSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 99 l~p~--~~~~~~~l~~~~~~l~~~~~ 122 (262)
++|. +......+......++....
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~ 107 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAREDA 107 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccccC
Confidence 9884 44555566666666665543
No 73
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=5.1e-14 Score=107.96 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 18 ~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
+..+-..|.+++.++|.+..+++.+|.+++..|+|++|+..|++++.++|.+..+|+.+|.++..+|+|++|+.+|++++
T Consensus 3 ~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp ---CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 98 SLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 98 ~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
.++|+++.+...++.+...+++...+
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 99999999999999888877765544
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=5.7e-13 Score=113.07 Aligned_cols=119 Identities=14% Similarity=0.050 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH------------------------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD------------------------ 58 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~------------------------ 58 (262)
..++..|..++..|++++|+..|.+++..+|+++.+++.+|.++..+|++++|+..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999887544
Q ss_pred ----------HHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHhh
Q 024778 59 ----------ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAEET 121 (262)
Q Consensus 59 ----------~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~~~ 121 (262)
+++++.++|++..+++.+|.++...|++++|+..|++++.++|++ ..++..+..+...+++..
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 455577789999999999999999999999999999999999988 778888888888876543
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=1.6e-12 Score=106.12 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR 75 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~ 75 (262)
+..++..|..++..|+|++|+..|++++...|.+ ..+++.+|.+|+.+|++++|+..|++++.++|++. .+++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4678999999999999999999999999999887 47899999999999999999999999999999876 48999
Q ss_pred HHHHHHH------------------hhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 76 KATACMK------------------LEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 76 ~g~~~~~------------------lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+|.+++. +|++++|+..|++++...|++..+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999987 5799999999999999999987544
No 76
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=7.1e-13 Score=114.98 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+...|++++|+.+|.+++..+|+++.++.++|.+|..+|++++|+..|++++.++|++..+++.+|.++..
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhcHHHHHHHHHHhhccCCCC------------HHHHHHHHHHHHHHHHh
Q 024778 83 LEEYETAKVALEKGASLAPGD------------SRFTNLIKECEERIAEE 120 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~------------~~~~~~l~~~~~~l~~~ 120 (262)
+|++++|+.+|++++.++|++ ..++..+..+...+++.
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 888888888888888877662 34556666666666544
No 77
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.46 E-value=9.3e-13 Score=112.72 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
++.++..|..++..|+|++|+.+|.+++..+|+++.+++.+|.++..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCC---CCHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAP---GDSRFTNLIK 111 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p---~~~~~~~~l~ 111 (262)
.+|++++|+..|++++.++| ++......+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 99999999999999999999 7777666553
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=1.7e-12 Score=107.87 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHH--------hhCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHHH
Q 024778 3 TDLEKKAKEAFI--------DDYFELAYDLYSQAIEISPNSAELF-----------------ADRAQASIKLQNFTEAVA 57 (262)
Q Consensus 3 ~~l~~~g~~~~~--------~~~~~~Ai~~~~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~ 57 (262)
..++..|..++. .|++++|+..|.+++..+|++..+. +.+|.+|..+|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 467889999999 9999999999999999999986555 889999999999999999
Q ss_pred HHHHHHHcCCC---CHHHHHHHHHHHHHh----------hcHHHHHHHHHHhhccCCCCHH---HHHHHHHHHHHHHHhh
Q 024778 58 DANRAIELEPS---MSKAYWRKATACMKL----------EEYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEET 121 (262)
Q Consensus 58 ~~~~al~l~p~---~~~a~~~~g~~~~~l----------g~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~~ 121 (262)
.|++++...|+ ...+++.+|.++..+ |++++|+..|++++...|+++. +...+..+...+++..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 467999999999988 9999999999999999999864 4556777777777765
Q ss_pred cc
Q 024778 122 GE 123 (262)
Q Consensus 122 ~~ 123 (262)
..
T Consensus 250 ~~ 251 (261)
T 3qky_A 250 GD 251 (261)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.8e-12 Score=103.76 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34566666667777777777777777777766666666677777777777777777777777666666666667777776
Q ss_pred h-hcHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHH
Q 024778 83 L-EEYETAKVALEKGAS--LAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 83 l-g~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~l~ 118 (262)
+ |++++|+..|++++. ..|.+..+...++.+....+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 6 777777777766666 34444445555555544443
No 80
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.46 E-value=5.8e-13 Score=115.55 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
+...|..+...|++++|+.+|.+++..+|. ++.++.++|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345588899999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|++++|+.+|++++.++|++..+...++.+...+++...+
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999888887765443
No 81
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=3.8e-13 Score=111.59 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT 78 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~ 78 (262)
+.++..|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+++++. .+.+ ..+++.+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 35678899999999999999999999999999988899999999999999999999999988 3332 456889999
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
++..+|++++|+.+|++++.++|.+..+...++.+...+++...+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999888888888888777765444
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=1.2e-12 Score=108.45 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+...|++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|..++.
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888844555
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.+++++|+.+|+++++++|++.....+++.+...++.
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 5588888888888888888877777777777666643
No 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=2.9e-12 Score=102.60 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--cCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIE--LEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~ 79 (262)
..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++... |++++|+..+++++. ..|....+++.+|.+
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999 999999999999988 666667888999999
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+..+|++++|+..|++++..+|.+..+...+..+....++...
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999888888777777776665443
No 84
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=2.2e-12 Score=105.81 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--LEPSMSKAYWRKATACM 81 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~ 81 (262)
.+...|..++..|++++|+.+|.+++..+|.+..++..+|.+|...|++++|+..+++++. ..|.+..+++.+|.++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666666666 55666666666666666
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+|++++|+.+|++++.++|.+..+...+..+...+++.
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 666666666666666666666666665555555544433
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.5e-12 Score=106.88 Aligned_cols=120 Identities=17% Similarity=0.081 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|++++|+.+|.+++..+|.+..++..+|.+|...|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhh
Q 024778 82 KLEEYETAKVALEKGAS--LAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.+|++++|+.+|++++. ..|.+..+...++.+....++..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999 77877777777777766655443
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=2.8e-13 Score=128.39 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++.+|..++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++ +.+|++++.++|++..+++++|.++.
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
.+|++++|+.+|+++++++|++..++..+..+.
T Consensus 546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999999999999999999988887777765
No 87
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=9.2e-13 Score=103.29 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH------------------------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA------------------------ 59 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~------------------------ 59 (262)
.++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 46778888888888888888888888888888888888888888888887765544
Q ss_pred ----------HHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHHh
Q 024778 60 ----------NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAEE 120 (262)
Q Consensus 60 ----------~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~~ 120 (262)
++++.++|++..+++.+|.++..+|++++|+..|++++.++|+. ..+...+..+...+++.
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 44455567778888888888888888888888888888888764 44777777777766544
No 88
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.42 E-value=6.1e-14 Score=105.67 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=63.0
Q ss_pred ccccccCCCCe-------EEEEEEecCCCCcceEEEEeeeEEEEEEecCC------CCeeeecccccccccc---ce---
Q 024778 174 YRHEFYQKPEE-------VVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG------EEAYHFQPRLFGKVYM---AY--- 234 (262)
Q Consensus 174 ~~~~~~q~~~~-------v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~L~~~i~~---~~--- 234 (262)
.++.|||+.+. |+|+|+++++ .++.|+|++++|+|++...+ +..|.++++||++|+| ++
T Consensus 7 p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~ 84 (134)
T 2cg9_X 7 PQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA 84 (134)
T ss_dssp ----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC
T ss_pred CCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC
Confidence 47999999988 9999999997 59999999999999876543 4689999999999999 22
Q ss_pred ------EEEeecC--CCCCCCccCCC
Q 024778 235 ------ILLFLKG--LIHHPFLDHQD 252 (262)
Q Consensus 235 ------i~l~K~~--~~~W~~l~~~~ 252 (262)
|+|+|++ ...|+.|....
T Consensus 85 ~~~~vei~L~K~~~~~~~W~rL~k~~ 110 (134)
T 2cg9_X 85 NGQHYFLKLYKKDLESEYWPRLTKEK 110 (134)
T ss_dssp CC--CEEEEEECSSSSCCCSCSSSSC
T ss_pred CCEEEEEEEEECCCCCCCCCceecCC
Confidence 9999999 46999998764
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.42 E-value=2.7e-12 Score=108.64 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCC------------CHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLAPG------------DSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|++++|+..|++++.+.|+ +..+...+..+...+++...+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999998 677778888888777765544
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.42 E-value=2.1e-12 Score=105.40 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH------------------ccCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIK------------------LQNFTEAVADANR 61 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~~a~~~~~------------------~~~~~~A~~~~~~ 61 (262)
..++..|..++..|+|++|+..|+++++.+|++. .+++.+|.++.. +|++++|+..|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 4688999999999999999999999999999986 478999999986 5799999999999
Q ss_pred HHHcCCCCHHHH-----------------HHHHHHHHHhhcHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHHHHhh
Q 024778 62 AIELEPSMSKAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEET 121 (262)
Q Consensus 62 al~l~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~~ 121 (262)
++..+|++..++ +.+|.+++..|++.+|+..|+++++..|+++ .+...++.+..++++..
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 999999876443 6789999999999999999999999999986 45677888877777655
Q ss_pred cc
Q 024778 122 GE 123 (262)
Q Consensus 122 ~~ 123 (262)
.+
T Consensus 202 ~A 203 (225)
T 2yhc_A 202 QA 203 (225)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 91
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=2.7e-12 Score=112.28 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..+...|++++|+..|++++..+|++..++.++|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
|++++|+..|++++.++|+++.+...+..+....+
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 66666666666665555555555555544444443
No 92
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=2.7e-12 Score=112.34 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
...|..++..|++++|+..|.+++..+|+++.++.++|.++...|++++|+..+++++.++|.+..++..+|.++...|+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 86 YETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
+++|+..|+++++++|++..+...+..+.
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.42 E-value=3.2e-13 Score=105.57 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=101.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHhhcH-
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-CMKLEEY- 86 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-~~~lg~~- 86 (262)
+..++..|+|++|+..|.+++..+|.++.++..+|.+|...|++++|+..|++++.++|.+..+++.+|.+ ++..|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 44467789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 87 -ETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 87 -~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
++|+.+|++++.++|++..+...++.+....++...+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 134 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence 9999999999999999999988888887777655443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.42 E-value=6.2e-12 Score=91.99 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++...|.+..++..+|.++...|++++|+..+++++...|.+..+++.+|.++..
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCC
Q 024778 83 LEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~ 102 (262)
+|++++|...|++++.++|+
T Consensus 116 ~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 116 QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHSTT
T ss_pred HccHHHHHHHHHHHHccCCC
Confidence 99999999999999999886
No 95
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.41 E-value=3.6e-12 Score=108.03 Aligned_cols=118 Identities=12% Similarity=-0.028 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 3 ~~l~~~g~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
..+...|..++..| ++++|+.+|.+++..+|.+..++..+|.++..+|++++|+..+++++.+.|.+..+++.+|.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45677888888888 88888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+|++++|+..|++++.++|++..+...++.+....++.
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 888888888888888888888887777777776665544
No 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.40 E-value=4.2e-13 Score=101.58 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 23 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
..|.+++..+|++...++.+|.+++..|++++|+..|++++.++|.+..+|+.+|.++..+|+|++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcc
Q 024778 103 DSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~~~~ 123 (262)
++.+...++.+...+++...+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHH
Confidence 999999999888887765444
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.40 E-value=8.6e-12 Score=110.76 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|++++..+|.++.+++.+|.+|..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCH---HHHHHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDS---RFTNLI 110 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~---~~~~~l 110 (262)
.+|++++|+..|++++.++|++. .....+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999887 555444
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=4.6e-12 Score=107.38 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---------CCCHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYW 74 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~ 74 (262)
.+...|..++..|++++|+.+|.+++..+|.++.++..+|.++..+|++++|+..+++++.+. |....+++
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 455567777777777777777777777777777777777777777777777777777777765 55566777
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
.+|.++..+|++++|+.+|++++.++|++..+...++.+...+++...+
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 7777777777777777777777777777777777777777766655443
No 99
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=99.40 E-value=4.6e-13 Score=100.61 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=61.9
Q ss_pred ccccccCCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce--------EEEeecC
Q 024778 174 YRHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY--------ILLFLKG 241 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~-k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~--------i~l~K~~ 241 (262)
.+|.|+|+.+.|+|+|.+ +|+++++|.|+|++++|+|.+. |.. .+.++||++|+| +| |+|.|++
T Consensus 5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~ 80 (131)
T 2o30_A 5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---GEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKKR 80 (131)
T ss_dssp CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---TEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---CEe-eEccccccccccccCEEEEeCCEEEEEEEECC
Confidence 479999999999999997 7999999999999999999873 556 788899999999 33 9999996
Q ss_pred CCCCCCccCCC
Q 024778 242 LIHHPFLDHQD 252 (262)
Q Consensus 242 ~~~W~~l~~~~ 252 (262)
...|++|...+
T Consensus 81 ~~~W~~L~~~~ 91 (131)
T 2o30_A 81 NEWWDSLLVGS 91 (131)
T ss_dssp CCCCSCSBC--
T ss_pred CCCCccccCCC
Confidence 66899997654
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.40 E-value=1.2e-11 Score=109.85 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
+...|..++..|++++|+.+|.+++...|.++ .++..+|.++.++|++++|+..+++++.++|++..+++.+|.++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35569999999999999999999999999984 47899999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
..+|++++|+.+|+++++++|++..+...+..+...++...
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998888877653
No 101
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.39 E-value=8.2e-12 Score=112.40 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|++++..+| ++.++..+|.+|..+|++++|+.++++++.++|.+..+++.+|.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999 69999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+|++++|+..|++++.++|.+..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHhhHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999986543
No 102
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.38 E-value=3.6e-12 Score=110.10 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++..|..++..|+|++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
+|++++|+..|++++.+.|.+....
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 9999999999999999999876544
No 103
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=99.38 E-value=1.6e-12 Score=97.72 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=66.0
Q ss_pred ccccccCCCCeEEEEEEec-C--CCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---------EEEe
Q 024778 174 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY---------ILLF 238 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k-~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~---------i~l~ 238 (262)
.+|.|+|+.+.|+|+|.++ | +++++|.|+|++++|+|.+. |..+.+.++||++|+| +| |+|.
T Consensus 8 ~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~ 84 (131)
T 1wfi_A 8 PNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLE 84 (131)
T ss_dssp CSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEE
T ss_pred CcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC---CceEEEecccccccccccCEEEEcCCCEEEEEEE
Confidence 3699999999999999977 6 88999999999999999974 5567788899999999 22 9999
Q ss_pred ecCCC-CCCCccCCC
Q 024778 239 LKGLI-HHPFLDHQD 252 (262)
Q Consensus 239 K~~~~-~W~~l~~~~ 252 (262)
|++++ .|++|...+
T Consensus 85 K~~~~~~W~~L~~~~ 99 (131)
T 1wfi_A 85 KINKMEWWNRLVTSD 99 (131)
T ss_dssp BSSSCCCCSCSBSSC
T ss_pred ECCCCCCChhhhcCC
Confidence 99985 999997543
No 104
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.37 E-value=2.2e-12 Score=90.96 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+.+|..++..|+|++|+..|++++..+|++.. +++++|.+|..+|++++|+..|++++.++|++..+++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887754
Q ss_pred hcHHHHHHHHHHhhccCCCCH
Q 024778 84 EEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~ 104 (262)
+.+.+|..+|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 777888888888888777653
No 105
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.36 E-value=1.6e-11 Score=84.57 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.++..|..++..|+|++|+.+|.+++..+|.+..++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555443
No 106
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.35 E-value=2.1e-11 Score=103.68 Aligned_cols=91 Identities=9% Similarity=0.095 Sum_probs=47.7
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH-HHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET-AKVALE 94 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~-A~~~~~ 94 (262)
|++++|+.+|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++++|.++..+|++.+ +..+++
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555555555555555555543 234455
Q ss_pred HhhccCCCCHHH
Q 024778 95 KGASLAPGDSRF 106 (262)
Q Consensus 95 ~a~~l~p~~~~~ 106 (262)
++++++|+++.+
T Consensus 260 ~~~~~~P~~~~~ 271 (291)
T 3mkr_A 260 QLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHHhCCCChHH
Confidence 555555555443
No 107
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.34 E-value=2.2e-11 Score=103.61 Aligned_cols=118 Identities=9% Similarity=0.001 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ--ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
..+...|..+...|++++|+..|.++++.+|++.......+. ++...|++++|+..|++++..+|.+..+++.+|.++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 456788999999999999999999999999998755544443 333458999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
..+|++++|+..|++++.++|+++.+...+..+...+++.
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999988888776666543
No 108
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=5.4e-12 Score=114.48 Aligned_cols=103 Identities=25% Similarity=0.378 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..++..|..++..|+|++|+.+|++++..+|+++.++.++|.||..+|++++|+..+++++.++|++..+++.+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhccCCCCHH
Q 024778 82 KLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 82 ~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+|++++|+..|+ ++.++|+...
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~ 127 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDG 127 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-------
T ss_pred HcCCHHHHHHHHH-HHhcCCCCCh
Confidence 9999999999996 8888887554
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.33 E-value=1.9e-11 Score=106.06 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+.++|.+++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|++++|+.+|++++.++|.+..+++.+|.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHH-HHHHHhh
Q 024778 82 KLEEYETAK-VALEKGA 97 (262)
Q Consensus 82 ~lg~~~~A~-~~~~~a~ 97 (262)
.+|++++|. ..|.+++
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999994 4555444
No 110
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=8.7e-12 Score=105.52 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..++.+|..++..|+|++|+.+|.+++..+|++..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
+|++++|+..|++++..+|.+......
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 999999999999999999987654433
No 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.32 E-value=1.1e-11 Score=112.45 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
.+...|..++..|++++|+.+|.+++..+|+++.++..+|.+|...|++++|+..+++++.++|.+..+++.+|.++..+
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
|++++|+..|++++.++|++..+...++.+....++..
T Consensus 358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 88888888888888888888877777777766665443
No 112
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=8.8e-12 Score=105.77 Aligned_cols=119 Identities=14% Similarity=0.015 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCCC-----
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEPSM----- 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~p~~----- 69 (262)
+..+.+.|..+...|+|++|+.+|++|+.+.+.. +.++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 4567889999999999999999999999987653 56899999999995 99999999999999998754
Q ss_pred -HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHHHHHh
Q 024778 70 -SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-------FTNLIKECEERIAEE 120 (262)
Q Consensus 70 -~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~~~~~l~~~ 120 (262)
..++.++|.++..+|+|++|+.+|++++.+.|++.. ....+..|...+++.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 467899999999999999999999999999987653 334555666555543
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=5.4e-11 Score=90.88 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH--HH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT--AC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~--~~ 80 (262)
..+...|..++..|+|++|+.+|.+++..+|.++.+++++|.++..+|++++|+..+++++.++|.+..++..++. .+
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999988855544 48
Q ss_pred HHhhcHHHHHHHHHHhhc
Q 024778 81 MKLEEYETAKVALEKGAS 98 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~ 98 (262)
...|++++|+..+.++..
T Consensus 128 ~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 128 VKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHH
Confidence 889999999999887654
No 114
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.30 E-value=8e-12 Score=103.40 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=101.0
Q ss_pred HHhhCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 13 FIDDYFELAYDLYSQAIEIS----PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
...|+|++|+..|.+++... |.++.+++.+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 45689999999999999984 45688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
|+.+|++++.++|++..+...++.+...+++...+
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999888888887777655443
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.5e-11 Score=90.60 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..+..+..+|.+++..|+|++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|++..+...++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhcc
Q 024778 114 EERIAEETGE 123 (262)
Q Consensus 114 ~~~l~~~~~~ 123 (262)
...+++...+
T Consensus 82 ~~~~~~~~~A 91 (126)
T 3upv_A 82 QIAVKEYASA 91 (126)
T ss_dssp HHHTTCHHHH
T ss_pred HHHHhCHHHH
Confidence 8877765443
No 116
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.2e-10 Score=104.23 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE------ 66 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~------ 66 (262)
+..+..+|..++..|+|++|+++|++|+++ +|.....+.++|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345678899999999999999999999986 56778899999999999999999999999999873
Q ss_pred --CCCHHHHHHHHHHHHHh--hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 67 --PSMSKAYWRKATACMKL--EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 67 --p~~~~a~~~~g~~~~~l--g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+....++..+|.++..+ ++|++|+.+|+++++++|+++.+...+..+...++..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 34678888898887765 4799999999999999999999988888877766654
No 117
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.29 E-value=3e-11 Score=85.94 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=72.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC--HHHHH
Q 024778 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTN 108 (262)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~--~~~~~ 108 (262)
.+|+++.+++.+|.+|+.+|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|++++.+.|.+ .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987743 33334
Q ss_pred HHHHHHHH
Q 024778 109 LIKECEER 116 (262)
Q Consensus 109 ~l~~~~~~ 116 (262)
.+..+...
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=4.1e-11 Score=110.76 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|+++++.+|++..++.++|.+|..+|++++|+..+++++.++|++..+++.+|.++..
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h---hcHHHHHHHHHHhhccCCCCHH
Q 024778 83 L---EEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 83 l---g~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+ |++++|...|+++++.+|.+..
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred hhccccHHHHHHHHHHHHhcCCcccC
Confidence 9 9999999999999999998643
No 119
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.6e-11 Score=85.29 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTN 108 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~ 108 (262)
++..++.+|.+++..|+|++|+..|++++.++|.+..+++++|.++..+|++++|+.+|++++.++|++ ..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 66777
Q ss_pred HHHHHHHHHHHhhcc
Q 024778 109 LIKECEERIAEETGE 123 (262)
Q Consensus 109 ~l~~~~~~l~~~~~~ 123 (262)
.++.+...++....+
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 788888888754433
No 120
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1.2e-11 Score=102.16 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------- 65 (262)
+..+...|..++..|+|++|+.+|.+++... |....++.++|.+|..+|++++|+..+.+++.+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3467889999999999999999999999883 555789999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHhhc
Q 024778 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 66 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+|....+++.+|.++..+|++++|+.+|++++.+ .|....+...++.+...+++...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 4667789999999999999999999999999998 55555566677777666665433
No 121
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=2.1e-11 Score=103.42 Aligned_cols=104 Identities=17% Similarity=0.075 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHh-hCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---
Q 024778 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK--- 71 (262)
Q Consensus 2 a~~l~~~g~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~--- 71 (262)
+..+.+.|..+... |++++|+.+|++|+.+.|.+ ..++.++|.+|..+|+|++|+..|++++.+.|.+..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34678889999996 99999999999999998754 567899999999999999999999999999987542
Q ss_pred ----HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 72 ----AYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 72 ----a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+++++|.++..+|++++|+.+|++++.++|+...
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 6899999999999999999999999999998654
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.26 E-value=1.7e-11 Score=91.18 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+.++.++|.++++.|+|++|+.+|++|+.++|.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 36778899999999999999999999999999999999999999999999999999999999999887654
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.26 E-value=1e-10 Score=107.68 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..+...|++++|+.+|.+++..+|.+..++..+|.+|.+.|++++|+..|++++.++|.+..+++.+|.+|..
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.|++++|+..|+++++++|.+......+..+..+.++..
T Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998888777777766655443
No 124
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=99.26 E-value=1.4e-11 Score=91.16 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred ccccccCCCCeEEEEEEec-C--CCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---------EEEe
Q 024778 174 YRHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY---------ILLF 238 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k-~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~---------i~l~ 238 (262)
.+|.|+||.+.|+|+|.++ | ++.++|.|+|++++|+|.++ |..+.+..+||++|+| .| |+|.
T Consensus 17 ~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~ 93 (121)
T 3qor_A 17 PNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIADGAVVTVHLE 93 (121)
T ss_dssp SSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEET---TSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEE
T ss_pred CCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEc---CcceEEeccccccccccccEEEEcCCCEEEEEEE
Confidence 4699999999999999876 5 78999999999999998874 5568888899999999 23 9999
Q ss_pred ecCC-CCCCCccCCC
Q 024778 239 LKGL-IHHPFLDHQD 252 (262)
Q Consensus 239 K~~~-~~W~~l~~~~ 252 (262)
|++. ..|++|-..+
T Consensus 94 K~~~~~~W~~L~~~~ 108 (121)
T 3qor_A 94 KINKMEWWSRLVSSD 108 (121)
T ss_dssp BSSSSCCCSCSBTTS
T ss_pred ECCCCCCChhhhcCC
Confidence 9987 5999996544
No 125
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.25 E-value=6.1e-11 Score=81.59 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
.++.+++.+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|++..+...++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHH
Q 024778 114 EERI 117 (262)
Q Consensus 114 ~~~l 117 (262)
...+
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 126
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.25 E-value=8.2e-11 Score=86.73 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.++.+|.+++..|++++|+..+++++.++|++..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+...+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhcc
Q 024778 118 AEETGE 123 (262)
Q Consensus 118 ~~~~~~ 123 (262)
++...+
T Consensus 99 g~~~~A 104 (121)
T 1hxi_A 99 HNANAA 104 (121)
T ss_dssp HHHHHH
T ss_pred CCHHHH
Confidence 876554
No 127
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.24 E-value=1.4e-10 Score=106.72 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCC-HHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL------EPSM-SKAYWRK 76 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~-~~a~~~~ 76 (262)
.+...|..+...|++++|+.+|++++...|.++.++..+|.+|.+.|++++|+..+++++.+ +|.. ..++..+
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777776 4543 5677777
Q ss_pred HHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
|.++...|++++|+..|+++++++|++..+...+..+....++..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 777777777777777777777777777777777776666655443
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.22 E-value=5.7e-11 Score=91.70 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHH
Q 024778 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (262)
Q Consensus 32 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (262)
.+.++..++.+|.+++..|+|++|+..|++++.++|.+..+++.+|.+++.+|+|++|+.+|++++.++|++..+...++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhcc
Q 024778 112 ECEERIAEETGE 123 (262)
Q Consensus 112 ~~~~~l~~~~~~ 123 (262)
.+...+++...+
T Consensus 87 ~~~~~~g~~~~A 98 (164)
T 3sz7_A 87 LARFDMADYKGA 98 (164)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHccCHHHH
Confidence 887777655443
No 129
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.21 E-value=1.2e-10 Score=86.37 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 30 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
..++.++..++.+|.+++..|+|++|+..|.+++.++|.+..+++.+|.++..+|++++|+.+|++++.++|++..+...
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhcc
Q 024778 110 IKECEERIAEETGE 123 (262)
Q Consensus 110 l~~~~~~l~~~~~~ 123 (262)
++.+...+++...+
T Consensus 83 l~~~~~~~~~~~~A 96 (137)
T 3q49_B 83 LGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 88888777655443
No 130
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.4e-11 Score=107.00 Aligned_cols=105 Identities=22% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---ccCHHHHHHHHHHHHHcCCCCHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE------LFADRAQASIK---LQNFTEAVADANRAIELEPSMSKAYWR 75 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~------~~~~~a~~~~~---~~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (262)
+...|..++..|++++|+.+|.+++...|.+.. ++..+|.++.. .|++++|+..+++++.++|.+..+++.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 334444444444555555555444444444322 44444555544 455555555555555555444444455
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHH
Q 024778 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (262)
+|.++..+|++++|...|++++.++|+++.+...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 5555555555555555555555555544444333
No 131
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=99.21 E-value=2e-11 Score=94.21 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=64.3
Q ss_pred cccccccCCCCeEEEEEEec-CCCCcceEEEEeeeEEEEEEecCCCCeeeecccccccccc---ce---------EEEee
Q 024778 173 KYRHEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM---AY---------ILLFL 239 (262)
Q Consensus 173 ~~~~~~~q~~~~v~v~i~~k-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~---~~---------i~l~K 239 (262)
..+|.|+|+.+.|+|+|.++ |+++++|.|+|++++|+|.+. |.. .+.++||++|+| +| |+|.|
T Consensus 13 ~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---g~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K 88 (157)
T 2rh0_A 13 TPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---GRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTK 88 (157)
T ss_dssp CSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---TEE-EEEEEBSSCBCGGGCEEEEECCCEEEEEEEB
T ss_pred CCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---CEE-EEeeccccccCccccEEEEcCCcEEEEEEEE
Confidence 35799999999999999975 888999999999999999874 444 477899999999 23 89999
Q ss_pred cCC---CCCCCccCC
Q 024778 240 KGL---IHHPFLDHQ 251 (262)
Q Consensus 240 ~~~---~~W~~l~~~ 251 (262)
++. ..|++|...
T Consensus 89 ~~~~~~~~W~~L~k~ 103 (157)
T 2rh0_A 89 TKRDAANCWTSLLES 103 (157)
T ss_dssp SSCSTTCCCSEEETT
T ss_pred cCCCcCCcChhhhcC
Confidence 986 699999754
No 132
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.4e-10 Score=99.01 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
.+...|..+...|++++|...|++++++.|.++. +|.++|.++...|++++|+..|++++..+|....+|...+...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4566777777788888888888888888877775 777888888777888888888888887777776666655555433
Q ss_pred -hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 83 -LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 83 -lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+|++++|...|+++++++|++..++..+..+...+
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 57777777777777777777776665555554443
No 133
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.20 E-value=9.7e-11 Score=102.82 Aligned_cols=118 Identities=10% Similarity=0.147 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSK 71 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~ 71 (262)
+..++..|..++..|+|++|+.+|++++...|.+. .++..+|.+|..+|++++|+..+++++.+ .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34678899999999999999999999999999986 68999999999999999999999999988 566778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASL------APGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~l~~ 119 (262)
+++.+|.++..+|++++|+.+|++++.+ .+....+...++.+...+++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999988 33334456667777777666
No 134
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=5e-11 Score=98.38 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------C
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E 66 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~ 66 (262)
..+...|..++..|++++|+.+|.+++.. +|....++.++|.+|..+|++++|+..+++++.+ .
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46788999999999999999999999998 4666889999999999999999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
|....+++.+|.++..+|++++|+.+|++++.+
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999986
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=1.7e-10 Score=91.83 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|+|++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+.+|++++.++|.+..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHH-HHHHHhhc
Q 024778 83 LEEYETAK-VALEKGAS 98 (262)
Q Consensus 83 lg~~~~A~-~~~~~a~~ 98 (262)
++++.++. ..|...+.
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99998887 44444443
No 136
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.19 E-value=1.4e-10 Score=104.72 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (262)
+..+.++|.+++..|+|++|+.+|+++|.++|++..+++++|.+|+.+|+|++|+.+|++++.++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHH-HHHhh
Q 024778 82 KLEEYETAKVA-LEKGA 97 (262)
Q Consensus 82 ~lg~~~~A~~~-~~~a~ 97 (262)
.++++.+|... |.+++
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988744 34333
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.18 E-value=5.4e-11 Score=108.18 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH--
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-- 79 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-- 79 (262)
+..+...|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+..+++++.++|++..++..++.+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcHHHHHHHHH-----------HhhccCCCC
Q 024778 80 CMKLEEYETAKVALE-----------KGASLAPGD 103 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~-----------~a~~l~p~~ 103 (262)
+...|++++|+..++ +++.++|+.
T Consensus 120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 889999999999999 888877753
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=2e-10 Score=88.39 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM 81 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~ 81 (262)
..+.++|.+++..|+|++|+..|+++|.++|+++.+++.+|.+|..+|++++|+.+|++++.++|++. .+...++.+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999998 66777887777
Q ss_pred HhhcHHHH
Q 024778 82 KLEEYETA 89 (262)
Q Consensus 82 ~lg~~~~A 89 (262)
.++++.++
T Consensus 144 ~~~~~~~~ 151 (162)
T 3rkv_A 144 RRAEKKAD 151 (162)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 77665443
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.17 E-value=4.5e-11 Score=84.92 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC--CHHHHHH
Q 024778 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNL 109 (262)
Q Consensus 32 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~--~~~~~~~ 109 (262)
+|+++.+++.+|.+++..|++++|+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|. +..+...
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999 9888888
Q ss_pred HHHHHHHH-HHhhcc
Q 024778 110 IKECEERI-AEETGE 123 (262)
Q Consensus 110 l~~~~~~l-~~~~~~ 123 (262)
++.+...+ ++...+
T Consensus 82 l~~~~~~~~~~~~~A 96 (112)
T 2kck_A 82 KADALRYIEGKEVEA 96 (112)
T ss_dssp HHHHHTTCSSCSHHH
T ss_pred HHHHHHHHhCCHHHH
Confidence 88887777 654433
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=4.1e-10 Score=81.92 Aligned_cols=84 Identities=24% Similarity=0.173 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++..+|++..+++.+|.++..+|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcH
Q 024778 83 LEEY 86 (262)
Q Consensus 83 lg~~ 86 (262)
+|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 9875
No 141
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=3.4e-11 Score=104.59 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-CMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~-~~~ 82 (262)
.++++|.+++..|+|++|+.+|+++|.++|++..+++++|.+|..+|++++|+.+|++++.++|++..++..++.+ ...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999988 445
Q ss_pred hhcHHHHHHHHHHhhccCCCCHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+.++.+...|.+++...|+++.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Confidence 67788899999999999987653
No 142
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=3.9e-10 Score=86.08 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=95.8
Q ss_pred hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhhcHHHHH
Q 024778 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELE-P-SMSKAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~~g~~~~~lg~~~~A~ 90 (262)
.+...+.+.|.+.+..++.+..+.+++|.|+.+.+ ++.+++..++.++..+ | +...++|.+|.+++++|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45567888899999989999999999999999988 7779999999999998 6 56799999999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 91 VALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+++++++++|++..+......+..++.+.
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888663
No 143
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=2.4e-10 Score=96.23 Aligned_cols=117 Identities=9% Similarity=0.148 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSKA 72 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~a 72 (262)
..++..|..++..|+|++|+.+|++++...|.+ ..++..+|.+|...|++++|+..+++++.+ .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 467889999999999999999999999999998 578889999999999999999999999987 3445789
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH------HHHHHHHHHHHHHH
Q 024778 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSR------FTNLIKECEERIAE 119 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~------~~~~l~~~~~~l~~ 119 (262)
++.+|.++..+|++++|+..|++++.+.+.... +...++.+...+++
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999988654322 55566666666665
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.16 E-value=1.3e-10 Score=89.75 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHhhcHHHHHHHHHHhhcc----
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSK-----AYWRKATACMKLEEYETAKVALEKGASL---- 99 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~~g~~~~~lg~~~~A~~~~~~a~~l---- 99 (262)
+..+.++|.+++.+|+|++|+..|++|++++|+ +.. +|+++|.++..+|+|++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHhhcc
Q 024778 100 ---APGDSRFT----NLIKECEERIAEETGE 123 (262)
Q Consensus 100 ---~p~~~~~~----~~l~~~~~~l~~~~~~ 123 (262)
+|++..++ ..++.+...+++...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA 121 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEA 121 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence 99998888 8888777777665444
No 145
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.15 E-value=7.9e-10 Score=92.00 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+..++..|..++..|++++|+.+|.+++. +.++.+++++|.+|.. .+++++|+..|++++.++ +..+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 35677888888888888888888888887 6677888888888888 888888888888888775 677888888
Q ss_pred HHHHH----hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 78 TACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 78 ~~~~~----lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
.++.. .+++++|+.+|++++.++ +..+...++.+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence 88888 888888888888888774 56666666665554
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=9.4e-10 Score=102.08 Aligned_cols=115 Identities=7% Similarity=-0.013 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCH
Q 024778 3 TDLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~ 70 (262)
..|..++..+...++ +++++..|++++..+|.+..+|..|+.++.+++ ++++++.+++++++++|.+.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~ 143 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF 143 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence 467888999988888 999999999999999999999999999999999 77999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 71 KAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 71 ~a~~~~g~~~~~lg-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
.||..++.++..+| .++++++++.++++.+|.+..++.....+...+
T Consensus 144 ~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999999 999999999999999999999998888887766
No 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=9e-10 Score=93.87 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHH-------hhCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 024778 3 TDLEKKAKEAFI-------DDYF-------ELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (262)
Q Consensus 3 ~~l~~~g~~~~~-------~~~~-------~~Ai~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 67 (262)
..++..|..+.. .|++ ++|+..|++|+. ++|++..+|..+|.++...|++++|...|++++.++|
T Consensus 51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 130 (308)
T 2ond_A 51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED 130 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Confidence 356666766653 4775 999999999999 7999999999999999999999999999999999999
Q ss_pred CCHH-HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 68 SMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 68 ~~~~-a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
.+.. +|..+|.++...|++++|...|++++++.|.+..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 172 (308)
T 2ond_A 131 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 172 (308)
T ss_dssp SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9886 9999999999999999999999999999998765543
No 148
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.15 E-value=2e-10 Score=99.97 Aligned_cols=118 Identities=10% Similarity=0.162 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSK 71 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~ 71 (262)
+..++..|..++..|+|++|+.+|++++...|.+ ..++..+|.+|..+|++++|+..+++++.+ .+....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4578899999999999999999999999999998 468899999999999999999999999887 344567
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAE 119 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~ 119 (262)
+++.+|.++..+|++++|+.+|++++.+.+.. ..+...++.+....++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999987643 2255566667666666
No 149
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.14 E-value=1.5e-10 Score=87.30 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------ 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 69 (262)
+..+...|..++..|+|++|+.+|.+++...+.. ..++..+|.+|..+|++++|+..+++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567899999999999999999999999985532 2588999999999999999999999999886542
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC--C----HHHHHHHHHHHHHHHHh
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPG--D----SRFTNLIKECEERIAEE 120 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~--~----~~~~~~l~~~~~~l~~~ 120 (262)
..+++.+|.++..+|++++|+.++++++.+.+. + ......++.+...+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence 568999999999999999999999999987432 2 12344555555555543
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=1.2e-10 Score=101.93 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-----
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPSM----- 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~----- 69 (262)
+..+...|..++..|++..|+.+|.+|+.+.+.. +.++.++|.+|..+|++++|+..+.+++.+.+..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3456777888888888888888888888763322 4577778888888888888888888887764432
Q ss_pred -HHHHHHHHHHHHHhhcHHHHHHHHHHhhcc-----C-CCCHHHHHHHHHHHHHHHHh
Q 024778 70 -SKAYWRKATACMKLEEYETAKVALEKGASL-----A-PGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 70 -~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l-----~-p~~~~~~~~l~~~~~~l~~~ 120 (262)
..+++++|.++..+|++++|+.+|++++.+ + |....+...++.+...+++.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence 247777888888888888888888888773 4 44445555666665555443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.14 E-value=3.8e-10 Score=82.67 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+.+|.+++..+|.+..+++++|.++..+|++++|+..+++++.++|.+..+++.++.++..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhc
Q 024778 83 LEE 85 (262)
Q Consensus 83 lg~ 85 (262)
+|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 764
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=1.4e-10 Score=97.32 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------- 66 (262)
..+...|..++..|++++|+.+|.+++.. .+....++..+|.+|..+|++++|+..+++++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45788999999999999999999999988 35557899999999999999999999999999884
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHhhc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
+....+++.+|.++..+|++++|+.+|++++.+ .|....+...++.+...+++...
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 556688999999999999999999999999998 44445556667777666655433
No 153
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=1.9e-10 Score=96.49 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------C
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E 66 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--------~ 66 (262)
..+...|..++..|++++|+.+|.+++... +....++.++|.++..+|++++|+..+++++.+ .
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 457888999999999999999999999884 555788999999999999999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
|....+++.+|.++..+|++++|+.+|++++.+
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667789999999999999999999999999975
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.11 E-value=7.8e-10 Score=97.31 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+.++|..++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|++++|+.+|++++.++|.+..++..++.++..
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHH
Q 024778 83 LEEYETAKVA 92 (262)
Q Consensus 83 lg~~~~A~~~ 92 (262)
+++++++...
T Consensus 354 ~~~~~~a~k~ 363 (370)
T 1ihg_A 354 IKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999888654
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.10 E-value=5.1e-10 Score=81.49 Aligned_cols=72 Identities=11% Similarity=-0.038 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
..+...|..++..|+|++|+.+|.++++.+|+++.+++++|.++..+|++++|+..+++++.+.|.+.....
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999876543
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=2.2e-10 Score=90.49 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CC----C
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EP----S 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~p----~ 68 (262)
+..+...|..++..|+|++|+.+|.+++.+ .+....++.++|.+|..+|++++|+..+.+++.+ .+ .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 346788999999999999999999999994 3445788999999999999999999999999988 33 2
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 69 MSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 69 ~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
...+++.+|.++..+|++++|..+|++++.+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999764
No 157
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.7e-09 Score=92.72 Aligned_cols=116 Identities=8% Similarity=0.056 Sum_probs=107.0
Q ss_pred HHHHHHHHH----HHh---hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHcCCCCHHHHH
Q 024778 4 DLEKKAKEA----FID---DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT--EAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 4 ~l~~~g~~~----~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~l~p~~~~a~~ 74 (262)
.+..++..+ ... +++.+++.+++++|..+|.+..+|..|+.++..++.++ +++..+++++..+|.+..||.
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 456666666 555 78999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHhhc------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 75 RKATACMKLEE------YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 75 ~~g~~~~~lg~------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
.++.++..+++ ++++++++.+++..+|+|..++..+..+...++.
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 99999999998 9999999999999999999999998888877764
No 158
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.08 E-value=1.1e-09 Score=76.87 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=66.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
.+.+|.+++..|++++|+..+++++.++|.+.. +++.+|.++..+|++++|+.+|++++.++|++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 357899999999999999999999999999999 999999999999999999999999999999998876
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=9.7e-10 Score=92.91 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HcCCCCH----H
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI---ELEPSMS----K 71 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~p~~~----~ 71 (262)
+...|..+...|+|++|+.+|.+++...+.. ..++.++|.+|..+|++++|+..+++++ ...+... .
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 3456777788899999999999999875543 5689999999999999999999999999 4455532 6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHHHhh
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEET 121 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~~~ 121 (262)
+++++|.+|..+|+|++|+.+|++++.+.+.. ..+...++.+...+++..
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 89999999999999999999999999875321 345566666666665443
No 160
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.07 E-value=1e-09 Score=77.79 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA 79 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~ 79 (262)
+..++..|..++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..+++++.+.+. +..+...+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999999998764 34444455555
Q ss_pred HHHhh
Q 024778 80 CMKLE 84 (262)
Q Consensus 80 ~~~lg 84 (262)
+...+
T Consensus 87 l~~~~ 91 (100)
T 3ma5_A 87 KLKAE 91 (100)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 54444
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=4.5e-10 Score=95.85 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------H
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~ 70 (262)
..+.+.|..+.. |+|++|+.+|++|+.+.+.. ..++.++|.+|..+|+|++|+..|++++.+.+.+ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 456788888888 99999999999999987643 5788999999999999999999999999986543 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
.+++.+|.++..+|++++|+.+|++++ ++|...
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 478889999999999999999999999 988654
No 162
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=3.5e-10 Score=95.69 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS-------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------ 69 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 69 (262)
..+...|..++..|+|++|+.+|.+++... +..+.+++++|.+|..+|+|++|+..+++++.+.+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 357889999999999999999999999631 2225688999999999999999999999999886433
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHhhccC
Q 024778 70 SKAYWRKATACMKLE-EYETAKVALEKGASLA 100 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg-~~~~A~~~~~~a~~l~ 100 (262)
..+++.+|.++..+| .+++|+.+|++++.+.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 689999999999999 5799999999998753
No 163
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=1.6e-09 Score=100.50 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
..|..++..+...+ +|++++++++++++.+|.+..+|..|+.++..++ .++++++++.+++..+|.+..+|+.+|.+
T Consensus 108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence 46888899999999 7799999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHh--------------hcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 80 CMKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 80 ~~~l--------------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
+..+ +.+++|++++.+++.++|++..++..++.+....+.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9986 789999999999999999999999988877766543
No 164
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.05 E-value=2.5e-10 Score=99.97 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------CHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI---SPN---SAELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSK 71 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~ 71 (262)
++..|..++..|+|++|+.+|.+|+.+ .++ .+.++.++|.+|..+|+++.|+..+.+|+.+.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 345899999999999999999999997 232 4689999999999999999999999999998443 346
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH------HHHHHHHHHHHHHHHhhc
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKECEERIAEETG 122 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~l~~~~~ 122 (262)
+++.+|.++..+|++++|+.+|++++.+.+... .+...++.+...+++...
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 899999999999999999999999998865332 245566666666654433
No 165
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=2.4e-10 Score=97.56 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------ 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------ 69 (262)
+..+.+.|..+...|+|++|+.+|.+++.+.+.. +.++.++|.+|.. |++++|+.+|++++.+.+..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3467788999999999999999999999985322 5788999999998 99999999999999987643
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
..++.++|.++..+|+|++|+.+|++++.+.+.+
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999987644
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=1.1e-09 Score=92.49 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAI---EISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al---~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------ 68 (262)
+..+...|..++..|+|++|+.+|.+++ ...+.+. .+++++|.+|..+|+|++|+..+++++.+.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3467889999999999999999999999 4556543 68999999999999999999999999987643
Q ss_pred CHHHHHHHHHHHHHhhcHHHH-HHHHHHhhccC
Q 024778 69 MSKAYWRKATACMKLEEYETA-KVALEKGASLA 100 (262)
Q Consensus 69 ~~~a~~~~g~~~~~lg~~~~A-~~~~~~a~~l~ 100 (262)
...+++++|.++..+|++++| ..+|++++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 268899999999999999999 88899998764
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.04 E-value=1.2e-09 Score=82.13 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS------MS 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~------~~ 70 (262)
..+...|..++..|+|++|+.+|.+++...+.. ..++.++|.++..+|++++|+..+++++.+.+. ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 467889999999999999999999999985443 678999999999999999999999999987432 25
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
.+++.+|.++..+|++++|..++++++.+..
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999988654
No 168
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=2.5e-09 Score=91.64 Aligned_cols=113 Identities=4% Similarity=-0.203 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 4 DLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQAS----IKL---QNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 4 ~l~~~g~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
.+..+|..+...+ ++++++.+++.+|..+|.+..+|..|+.++ ..+ +++++++..+.+++..+|.+..+|+
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~ 148 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5666777777777 777888888888888887777777777777 555 6777777878888888888877888
Q ss_pred HHHHHHHHhhcHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 75 RKATACMKLEEYE--TAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 75 ~~g~~~~~lg~~~--~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
.++.++..+|.++ ++++++.++++.+|.|-.++.....+...
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 7887777777777 77788888888888777766555544433
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=4.5e-09 Score=75.56 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
..+...|..++..|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hh
Q 024778 83 LE 84 (262)
Q Consensus 83 lg 84 (262)
+|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 64
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.03 E-value=5.3e-10 Score=97.28 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------SK 71 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~ 71 (262)
.+...|..++..|+|++|+.+|.+++.+.+.. ..++.++|.+|..+|++++|+..+++++.+.+.. ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 45566666666666666666666666654332 2366666666666666666666666666655443 45
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
+++.+|.++..+|++++|+.+|++++.+.+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666543
No 171
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=9.7e-09 Score=85.31 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 3 ~~l~~~g~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
..++..|..+.. .+++++|+.+|.++++.. ++.+++++|.+|.. .+++++|+..+++++..+ +..+++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 114 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence 345667777777 777777777777777764 56777777777777 777777777777777763 667777
Q ss_pred HHHHHHHH----hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 75 ~~g~~~~~----lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.+|.++.. .+++++|+.+|+++++++ +......++.+..
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 77777777 777777777777777765 3444444444433
No 172
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=9.9e-10 Score=96.08 Aligned_cols=121 Identities=13% Similarity=0.026 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------C
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEP------S 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p------~ 68 (262)
+..+...|..++..|++..|+.+|.+|+.+.+. .+.++.++|.+|..+|++++|+..+.+++.+.+ .
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 345677788888888888888888888876432 145677888888888888888888888887633 1
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 69 MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 69 ~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
...+++++|.++..+|++++|+.+|++++. .+|....+...++.+...+++...
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence 235778888888888888888888888888 556555566667766666655433
No 173
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=5.2e-10 Score=94.59 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKA 72 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a 72 (262)
...|..++..++|++|+.+|.+++...+.. ..++.++|.+|..+|+|++|+..+++++... +....+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 347888888889999999999999964432 4479999999999999999999999999532 223468
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHH
Q 024778 73 YWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIA 118 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~ 118 (262)
++++|.+|..+|+|++|+.++++++.+.+.. ..+...++.+...++
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876433 456667777777666
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=2.4e-09 Score=76.38 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
.+..++.+|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHhhc
Q 024778 115 ERIAEETG 122 (262)
Q Consensus 115 ~~l~~~~~ 122 (262)
..+++...
T Consensus 83 ~~~~~~~~ 90 (118)
T 1elw_A 83 EFLNRFEE 90 (118)
T ss_dssp HHTTCHHH
T ss_pred HHHhhHHH
Confidence 77765443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.7e-09 Score=79.60 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=84.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
..+.+...++.+|.+++..|++++|+..|++++.++|++ ..+++.+|.++..+|++++|+.+|++++.++|++..+.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999987 89999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhcc
Q 024778 108 NLIKECEERIAEETGE 123 (262)
Q Consensus 108 ~~l~~~~~~l~~~~~~ 123 (262)
..++.+...+++...+
T Consensus 103 ~~~a~~~~~~~~~~~A 118 (148)
T 2dba_A 103 YRRSQALEKLGRLDQA 118 (148)
T ss_dssp HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCHHHH
Confidence 8888888777665443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.01 E-value=1.1e-08 Score=88.33 Aligned_cols=110 Identities=9% Similarity=-0.030 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhh--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
..+..++..+...+ +|++++.++++++..+|.|..+|..|+.++..+|. +++++.++.+++..+|.+..+|..++.+
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l 188 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35667777777777 48888888888888888888888888888888887 6888888888888888888888888888
Q ss_pred HHHh--------------hcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 80 CMKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 80 ~~~l--------------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
+..+ +.++++++++.+++..+|+|..++..+.-
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ 235 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 235 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8887 67888888888888888888887764443
No 177
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=3.8e-09 Score=74.30 Aligned_cols=74 Identities=16% Similarity=0.031 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 32 SPNSAELFADRAQASIKLQN---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 32 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
+|+++.++..+|.+++..++ ..+|...+++++.++|++..+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999987766 799999999999999999999999999999999999999999999999998543
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.01 E-value=2.6e-09 Score=90.18 Aligned_cols=106 Identities=17% Similarity=0.017 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-CHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELE--PS-MSKAYWRKAT 78 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--p~-~~~a~~~~g~ 78 (262)
..+..|..+++.++|.+|+.+|++++...+.. ..+++++|.++..+|++++|+..|++++... |. ...+++++|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 35667778888888888888887766542111 3478888888888888888888888887544 44 4568888888
Q ss_pred HHHHhhcHHHHHHHHHHhhccCCCCHHHHHHH
Q 024778 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (262)
++..+|+.++|...|++++..+|+ ..+...|
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 888888888888888888888887 5554444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.00 E-value=1.5e-09 Score=79.54 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC---HHHHHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEEYETAKVALEKGASLAPGD---SRFTNLI 110 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~---~~~~~~l 110 (262)
..++.+|.+++..|++++|+..+++++..+|++. .+++.+|.+++.+|++++|+..|++++..+|++ +.+..++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467899999999999999999999999999988 899999999999999999999999999999998 7778888
Q ss_pred HHHHHHHHHhhcc
Q 024778 111 KECEERIAEETGE 123 (262)
Q Consensus 111 ~~~~~~l~~~~~~ 123 (262)
+.+...+++...+
T Consensus 83 a~~~~~~g~~~~A 95 (129)
T 2xev_A 83 GLSQYGEGKNTEA 95 (129)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 8888777665443
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=1.6e-08 Score=87.34 Aligned_cols=114 Identities=6% Similarity=-0.026 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCHH
Q 024778 4 DLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 4 ~l~~~g~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~ 71 (262)
.+..++..+...+. +.+++.+++.+|..+|.+..+|..|+.++..++ .+++++..+.+++.++|.+..
T Consensus 66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~ 145 (331)
T 3dss_A 66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH 145 (331)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH
Confidence 56667777666554 789999999999999999999999999999999 499999999999999999999
Q ss_pred HHHHHHHHHHHhhc-HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 72 a~~~~g~~~~~lg~-~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+|..++.++..+|. ++++++++.++++.+|.|..++.....+...+
T Consensus 146 AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 146 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999999999999 69999999999999999999998888877776
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.00 E-value=2.1e-09 Score=82.83 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYF----------ELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN 60 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~----------~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~ 60 (262)
+..+++.|..+...+++ ++|+..|++||+++|++..+++++|.+|..+| ++++|+.+|+
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 46788899999888775 59999999999999999999999999999885 8999999999
Q ss_pred HHHHcCCCCH
Q 024778 61 RAIELEPSMS 70 (262)
Q Consensus 61 ~al~l~p~~~ 70 (262)
+|+.++|++.
T Consensus 116 kAl~l~P~~~ 125 (158)
T 1zu2_A 116 QAVDEQPDNT 125 (158)
T ss_dssp HHHHHCTTCH
T ss_pred HHHHhCCCCH
Confidence 9999999975
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=2.7e-09 Score=89.98 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 33 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
|.++..+..+|.+++..|+|++|+..|++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHhhc
Q 024778 113 CEERIAEETG 122 (262)
Q Consensus 113 ~~~~l~~~~~ 122 (262)
+...+++...
T Consensus 81 ~~~~~g~~~~ 90 (281)
T 2c2l_A 81 CQLEMESYDE 90 (281)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHcCCHHH
Confidence 7766654433
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=3.7e-09 Score=94.44 Aligned_cols=103 Identities=22% Similarity=0.117 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-------------------QNFTEAVADANRAI 63 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~-------------------~~~~~A~~~~~~al 63 (262)
..+...|..+...|++.+|+..|.+++..+|+++.++.++|.+|... +.++.|+..+++++
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999888643 34678888899999
Q ss_pred HcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.++|.+..+++.+|.++..+|++++|+.+|++++.+++++..
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 999998888999999999999999999999999998887544
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=3.9e-09 Score=85.18 Aligned_cols=110 Identities=15% Similarity=0.036 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ----NFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+..++..|..++..+++++|+.+|.++++. .++.+++++|.+|.. + ++++|+.+|+++.. +.+..+++.+|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 456788899999999999999999999875 578899999999887 6 89999999999854 56888999999
Q ss_pred HHHHH----hhcHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHH
Q 024778 78 TACMK----LEEYETAKVALEKGASLAPG--DSRFTNLIKECEER 116 (262)
Q Consensus 78 ~~~~~----lg~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~ 116 (262)
.+|.. .+++++|+.+|+++.+..+. ++.+...+..+...
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 99987 88999999999999998873 36666667666554
No 185
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=3.7e-09 Score=92.44 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----cCCCCH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIE-----LEPSMS 70 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~p~~~ 70 (262)
+..+...|..+...|+|++|+.+|.+|+.+.+. .+.++.++|.+|..+|++++|+..+++++. .+|...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 346778999999999999999999999997431 256889999999999999999999999999 778788
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
.+++.+|.++..+|++++|..+|++++.+.+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998653
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.98 E-value=6.3e-09 Score=75.12 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~ 80 (262)
..++..|..++..|+|++|+.+|.+++..+|.+..+++++|.+|..+|++++|+..|++++.++|. +..+...+...+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999874 445555555555
Q ss_pred HHhhcH
Q 024778 81 MKLEEY 86 (262)
Q Consensus 81 ~~lg~~ 86 (262)
..+++.
T Consensus 100 ~~l~~~ 105 (115)
T 2kat_A 100 RRLARE 105 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 555544
No 187
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=3.9e-10 Score=98.90 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------H
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~ 70 (262)
..+...|..++..|+|++|+.+|.+++.+.+.. ..++.++|.+|..+|++++|+..+++++.+.+.. .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 466788889999999999999999999886543 2378899999999999999999999999887643 5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHHH
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAE 119 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~ 119 (262)
.+++.+|.++..+|++++|..+|++++.+.+.. ..+...++.+...+++
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 788899999999999999999999998875432 1244445555544443
No 188
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=2.3e-09 Score=83.67 Aligned_cols=82 Identities=10% Similarity=-0.023 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
+..+|+..|.+++..+|+++.+++++|.++..+|++++|+..|++++.++|.. ..+++.+|.++..+|++++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 33456888888899999999999999999999999999999999999999975 5699999999999999999999999
Q ss_pred Hhhc
Q 024778 95 KGAS 98 (262)
Q Consensus 95 ~a~~ 98 (262)
+++.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 189
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=3e-09 Score=89.93 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=79.4
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhcH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEY 86 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~lg~~ 86 (262)
+..+...+++.+|+..|.+++..+|++..+++++|.+|...|++++|+..|.+++..+|++ ..++.++|.++..+|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3344455555556677778888999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHhhc
Q 024778 87 ETAKVALEKGAS 98 (262)
Q Consensus 87 ~~A~~~~~~a~~ 98 (262)
++|...|++++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999998875
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=4.9e-09 Score=84.60 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCC--CCHHH
Q 024778 3 TDLEKKAKEAFIDD----YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEP--SMSKA 72 (262)
Q Consensus 3 ~~l~~~g~~~~~~~----~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p--~~~~a 72 (262)
..++..|..+.. + ++++|+.+|.+++. +.++.+++++|.+|.. .+++.+|+.+|++++..++ .++.+
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 466778888777 6 89999999999965 4678999999999987 7899999999999999888 35889
Q ss_pred HHHHHHHHHH----hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 73 YWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 73 ~~~~g~~~~~----lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
++.+|.+|.. .+++++|+.+|+++.++ ++++.+...+..+...
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 9999999999 88999999999999988 5566677777766543
No 191
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.95 E-value=8.6e-10 Score=92.83 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------H
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S 70 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~ 70 (262)
..+...|..++..|++++|+.+|.+++...+.. ..++..+|.++..+|++++|+..+++++.+.+.. .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 457788999999999999999999999875432 3489999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHHHHhhc
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEETG 122 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~~~~ 122 (262)
.+++.+|.++..+|++++|..+|++++.+.+.. ..+...++.+...+++...
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 789999999999999999999999999876532 2244556666666665443
No 192
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=2.9e-08 Score=86.25 Aligned_cols=108 Identities=7% Similarity=0.024 Sum_probs=97.9
Q ss_pred HhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-h-cHHHHH
Q 024778 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL-E-EYETAK 90 (262)
Q Consensus 14 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l-g-~~~~A~ 90 (262)
..+..++|+.+++++|.++|.+..+|..|+.++..++ .+++++..++.++..+|++..+|..++.++..+ + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3444568999999999999999999999999999999 599999999999999999999999999999999 8 999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 024778 91 VALEKGASLAPGDSRFTNLIKECEERIAEET 121 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (262)
.++.++++++|.|..++.....+...++...
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999998887777776666543
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.93 E-value=1.5e-08 Score=72.46 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS-------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
+...+..|..++..++|..|+..|.+|++.. .....++..+|.||+++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4566777777777777777777777777653 123555666666666666666666666666666666655555
Q ss_pred HHH
Q 024778 75 RKA 77 (262)
Q Consensus 75 ~~g 77 (262)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=4.2e-09 Score=95.89 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPSM 69 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~ 69 (262)
..+.+.+..+...|+|++|+.+|.++|.+ .+++ +..+.++|.+|..+|+|++|+..+++++.+ .+++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566777788999999999999999986 3444 577899999999999999999999999976 3444
Q ss_pred ---HHHHHHHHHHHHHhhcHHHHHHHHHHhhc-----cCCCCHHHH---HHHHHHHHHHHH
Q 024778 70 ---SKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFT---NLIKECEERIAE 119 (262)
Q Consensus 70 ---~~a~~~~g~~~~~lg~~~~A~~~~~~a~~-----l~p~~~~~~---~~l~~~~~~l~~ 119 (262)
...+.++|.+|..+|+|++|+..|++++. +.|+++... ..+..+...++.
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999997 477877644 345555544443
No 195
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=1.6e-08 Score=87.91 Aligned_cols=115 Identities=5% Similarity=-0.113 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHhh-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKL-Q-NFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 3 ~~l~~~g~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
..+..++..+...+ ++++++.+++.+|..+|.+..+|..|+.++..+ + ++++++..+.+++.++|.+..+|..++-+
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv 168 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788888898888 599999999999999999999999999999998 8 89999999999999999999999999999
Q ss_pred HHHhhcHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 80 CMKLEEYE--------TAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 80 ~~~lg~~~--------~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
+..+|.++ ++++++.++++.+|.|..++.....+...+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999998 999999999999999998887776665444
No 196
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.90 E-value=4e-09 Score=76.64 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC-------HHHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD-------SRFT 107 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~-------~~~~ 107 (262)
.+..++.+|.+++..|++++|+..+.+++.++|.+..+++.+|.++..+|++++|+.+|++++.+.|.+ ..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999998866 6666
Q ss_pred HHHHHHHHHHHHhhc
Q 024778 108 NLIKECEERIAEETG 122 (262)
Q Consensus 108 ~~l~~~~~~l~~~~~ 122 (262)
..++.+...+++...
T Consensus 83 ~~la~~~~~~~~~~~ 97 (131)
T 1elr_A 83 ARIGNSYFKEEKYKD 97 (131)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccHHH
Confidence 667777666654433
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.87 E-value=1.1e-08 Score=91.70 Aligned_cols=108 Identities=11% Similarity=0.116 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC--
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPSM-- 69 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~-- 69 (262)
..+.+......|+|++|+.+|.++|.+ .|++ +..+.++|.+|..+|+|++|+..+++++.+ .+++
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 344455555678999999999999986 4455 567889999999999999999999999976 3444
Q ss_pred -HHHHHHHHHHHHHhhcHHHHHHHHHHhhc-----cCCCCHHHHHHHHH
Q 024778 70 -SKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKE 112 (262)
Q Consensus 70 -~~a~~~~g~~~~~lg~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~ 112 (262)
...++++|.+|..+|+|++|+..|+++++ +.|+++........
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 56899999999999999999999999997 47888876654443
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=4.6e-09 Score=88.62 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMK 82 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~~g~~~~~ 82 (262)
....+..+...|+|++|.++|..++...|.+. .++.+|.++++.++|.+|+..|+.++...+.. ..+++.+|.++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999888 99999999999999999999999887654222 3589999999999
Q ss_pred hhcHHHHHHHHHHhhccC--CC-CHHHHHHHHHHHHHHHHhhcc
Q 024778 83 LEEYETAKVALEKGASLA--PG-DSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~--p~-~~~~~~~l~~~~~~l~~~~~~ 123 (262)
+|++++|+.+|+++.... |. ...+...++.|..++++..++
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998543 54 445777788888888766554
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.86 E-value=4.7e-08 Score=69.90 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 35 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
++.-++.+|..++..++|..|+.+++.|+... ......+..+|.+++.+|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45667899999999999999999999999863 34568899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 024778 108 NLIKECEERIAEE 120 (262)
Q Consensus 108 ~~l~~~~~~l~~~ 120 (262)
..+..+...+...
T Consensus 84 ~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 84 GNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc
Confidence 8887666665543
No 200
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=8e-09 Score=81.35 Aligned_cols=100 Identities=8% Similarity=0.091 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C---
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPS--M--- 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~---~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~--~--- 69 (262)
+..+...|..++..|++++|+.+|.+++.+ .+++ ..++.++|.++..+|++++|+..+++++.+.+. +
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 346788999999999999999999999998 4433 567899999999999999999999999976432 2
Q ss_pred -HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 70 -SKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 70 -~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
..++..+|.++..+|++++|..+|++++.+..
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999998754
No 201
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.84 E-value=2.2e-08 Score=91.53 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC- 80 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~- 80 (262)
..+...|..+...|++++|...|++++...|.++ .+|.++|.++.+.|++++|+..|++|+...|.....+...+.+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3567778888889999999999999999998885 68889999988889999999999999988887777777666553
Q ss_pred HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 024778 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (262)
Q Consensus 81 ~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (262)
...|++++|...|+++++..|+++.++..+..+...++
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 35888999999999999999988877766665544433
No 202
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.81 E-value=8.6e-08 Score=70.59 Aligned_cols=108 Identities=9% Similarity=0.031 Sum_probs=94.2
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhhcH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE---AVADANRAIELE-P-SMSKAYWRKATACMKLEEY 86 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~~g~~~~~lg~~ 86 (262)
.........+...|.+.+..++.+....+++|.++.+..+... ++..++..+..+ | ..-.++|.+|..++++|+|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 3445566778888999998888899999999999999877665 999999888876 4 4568999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 024778 87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (262)
..|..+++.+++..|+|..+......++.++.+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988888765
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=1e-07 Score=85.34 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC-
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPSM- 69 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~~- 69 (262)
.+......+...|+|++|+.+|.++|.+ .+++ ...+.++|.+|..+|+|++|+..+++++.+ .+.+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 4555666788999999999999999986 3444 577899999999999999999999999975 3444
Q ss_pred --HHHHHHHHHHHHHhhcHHHHHHHHHHhhc-----cCCCCHHHHHHHHH
Q 024778 70 --SKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKE 112 (262)
Q Consensus 70 --~~a~~~~g~~~~~lg~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~ 112 (262)
...++++|.+|..+|+|++|+..|+++++ +.|+++.....+..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 46899999999999999999999999997 47888876654433
No 204
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=1.3e-07 Score=86.37 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHH-------hhCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 024778 3 TDLEKKAKEAFI-------DDYFE-------LAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (262)
Q Consensus 3 ~~l~~~g~~~~~-------~~~~~-------~Ai~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p 67 (262)
..++..|..+.. .|+++ +|+..|.+|+. ..|++..++..+|.++...|++++|...|++++.+.|
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Confidence 356667777665 68887 99999999998 7999999999999999999999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 68 SMS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 68 ~~~-~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
.+. .+|..+|.++...|++++|...|+++++..|......
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 885 6999999999999999999999999999988765443
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.76 E-value=1.9e-07 Score=81.36 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------------------
Q 024778 2 ATDLEKKAKEAFID---DYFELAYDLYSQAIEISPNSAELFADRAQASI------------------------------- 47 (262)
Q Consensus 2 a~~l~~~g~~~~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~------------------------------- 47 (262)
|-.++.+|..++.. .++.+|+.+|++|++++|+++.++..++.||.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 34677788888765 45689999999999999999887776666553
Q ss_pred -------------HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCH
Q 024778 48 -------------KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (262)
Q Consensus 48 -------------~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~ 104 (262)
..|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|.+++.++|..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 24667777777777777775 355666777777777777777777777777777654
No 206
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=6.2e-08 Score=83.99 Aligned_cols=99 Identities=9% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCC
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE--------PSM 69 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--------p~~ 69 (262)
.+...|..++..|++++|+..|.+++.+.+.. ..++.++|.++..+|++++|+..+++++.+. |..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 35566777777777777777777777764332 2345677777777777777777777777654 223
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
..++..+|.++...|++++|..++++++.+.+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 456667777777778888888877777776654
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=1.9e-07 Score=70.12 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=76.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK- 82 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~- 82 (262)
.|..+...+.+++|+.+|.++.+. .++.+++++|.+|.. .+++++|+.+|+++... .+..+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 667777777888899999999886 578889999999988 78999999999999876 578889999999998
Q ss_pred ---hhcHHHHHHHHHHhhccC
Q 024778 83 ---LEEYETAKVALEKGASLA 100 (262)
Q Consensus 83 ---lg~~~~A~~~~~~a~~l~ 100 (262)
.+++++|+.+|+++.+..
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 889999999999998874
No 208
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.63 E-value=2.5e-07 Score=80.16 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----CH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MS 70 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~-----~~ 70 (262)
.+...|..++..|+|.+|+.+|.+++... |....++.++|.++..+|++++|+..+++++.+.+. ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35778999999999999999999999875 334567888999999999999999999999998775 34
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
.++..+|.++...|++++|...+++++.+.
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999874
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.60 E-value=3.6e-07 Score=82.61 Aligned_cols=107 Identities=12% Similarity=-0.002 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHH
Q 024778 3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWR 75 (262)
Q Consensus 3 ~~l~~~g~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (262)
..++..|..++..| ++++|+.+|.+++.. .++.+++++|.+|.. .+++++|+.+|++++..+ +..++++
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 34566777776644 788888888888876 567888888888888 788888888888888764 5778888
Q ss_pred HHHHHHH----hhcHHHHHHHHHHhhccCCC---CHHHHHHHHHH
Q 024778 76 KATACMK----LEEYETAKVALEKGASLAPG---DSRFTNLIKEC 113 (262)
Q Consensus 76 ~g~~~~~----lg~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~ 113 (262)
+|.+|.. .+++++|..+|+++++.+|+ ++.+..++..+
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 8888888 78888888888888888844 55555555443
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.56 E-value=4.2e-07 Score=63.69 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHhhC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC
Q 024778 2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~ 69 (262)
+..+...|..++..++ ..+|..++.++|..+|+++.+++.+|..++..|+|.+|+..+++++..+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567888999876665 7999999999999999999999999999999999999999999999999984
No 211
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.56 E-value=1.9e-06 Score=77.83 Aligned_cols=106 Identities=11% Similarity=-0.002 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHH
Q 024778 3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW 74 (262)
Q Consensus 3 ~~l~~~g~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~ 74 (262)
..++..|..++. .+++++|+.+|.++++. .++.+++.+|.+|.. .+++++|+.+|+++... .+..+++
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 115 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 345666666666 67777777777777665 456677777777776 67777777777777654 3566677
Q ss_pred HHHHHHHH----hhcHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 024778 75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (262)
Q Consensus 75 ~~g~~~~~----lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (262)
.+|.+|.. .+++++|+.+|+++... ++..+...++.+.
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 77777766 66777777777776654 3444444444443
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.54 E-value=8.7e-07 Score=79.65 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 024778 4 DLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRK 76 (262)
Q Consensus 4 ~l~~~g~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (262)
.++..|..+...| ++.+|+.+|.+++...+.++..++++|.+|... +++++|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4556666666666 777777777777777777776666777776544 56677777777665 6666666666
Q ss_pred HHH-H--HHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 77 ATA-C--MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 77 g~~-~--~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
|.+ + ...+++++|+.+|+++.+.+ ++.+...++.+..
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 666 3 34566666666666666443 4555555555443
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.53 E-value=2e-07 Score=84.81 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~ 68 (262)
+..+.++|..|...|+|++|+.+|.++|.+ .+++ +..+.++|.+|..+|+|++|+..+++|+.+ .|+
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999999999986 3444 578999999999999999999999999975 566
Q ss_pred CH---HHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 69 MS---KAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 69 ~~---~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
++ ...-.++.++..++.|++|...|.++.+.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 56678999999999999999999887653
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=4.8e-07 Score=68.93 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHhh---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 3 ~~l~~~g~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+..++.|.++.+.+ +.++++.++...++.+ | ++.++++++|..|+++++|++|+++++.+++++|++.++...+-
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 56788999999977 7889999999999998 7 56899999999999999999999999999999999998877665
Q ss_pred HHHH
Q 024778 78 TACM 81 (262)
Q Consensus 78 ~~~~ 81 (262)
.+-.
T Consensus 113 ~ie~ 116 (152)
T 1pc2_A 113 LIDK 116 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.51 E-value=5.2e-07 Score=75.80 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH-hhcHH
Q 024778 17 YFELAYDLYSQAIEISPN--SAELFADRAQASIKL-----QNFTEAVADANRAIELEPSM-SKAYWRKATACMK-LEEYE 87 (262)
Q Consensus 17 ~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~~-lg~~~ 87 (262)
....|...+.+|++++|+ +..+|..+|..|.++ |+.++|..+|++|+.++|+. ..+++.+|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 457889999999999999 778999999999996 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHhhccCCC
Q 024778 88 TAKVALEKGASLAPG 102 (262)
Q Consensus 88 ~A~~~~~~a~~l~p~ 102 (262)
+|..++++++..+|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998876
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=2.2e-06 Score=64.21 Aligned_cols=94 Identities=14% Similarity=0.026 Sum_probs=81.6
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hhcHHHHH
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK 90 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----lg~~~~A~ 90 (262)
.+|+++|+.+|.++.+.....+. +|.+|...+.+++|+.+|+++... .+..+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 57899999999999998754444 999999889999999999999987 688999999999999 89999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 91 VALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
.+|+++.+. +++.+...+..+...
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999999987 567777777776654
No 217
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.46 E-value=1.5e-06 Score=78.11 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=61.0
Q ss_pred HHHHHHHHHh----hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 6 EKKAKEAFID----DYFELAYDLYSQAIEISPNSAELFADRAQAS---IKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 6 ~~~g~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~---~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..|..+... +++++|+.+|.++. |.++.+++++|.+| ...+++++|+.+|+++...+ +..+++.+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 4555555443 56666666666665 56666666666663 34566666666666666443 5666666666
Q ss_pred HHHHhh-----cHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 79 ACMKLE-----EYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 79 ~~~~lg-----~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
+|. .| ++++|+.+|+++. ++++.+...++.+..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 665 44 6666666666666 555555555555443
No 218
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.42 E-value=4.1e-06 Score=61.89 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQN---FTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 19 ~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
....+.|..-+ ...-++...++.|.|+.+..+ ..+++..++..+..+|. .-.++|.+|..++++|+|.+|..+.+
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444454433 233357889999999998865 45799999999998884 46899999999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 95 KGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 95 ~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
.+++..|+|..+......++.++.+.
T Consensus 103 ~lL~~eP~N~QA~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 103 TLFEHERNNKQVGALKSMVEDKIQKE 128 (134)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988764
No 219
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.38 E-value=3.7e-06 Score=71.78 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKA 77 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~~g 77 (262)
.+...|..+...|++++|++.+.++|..+| .+.+++..++.+++++|+.+.|.+.+++....+|+ +-.....++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 346788999999999999999999999887 78999999999999999999999999999999983 122334444
Q ss_pred H--HHHHhh--cHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 78 T--ACMKLE--EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 78 ~--~~~~lg--~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
. +....| ++.+|...|+.+....|+.......+. +...+++.
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~ 227 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNI 227 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCH
Confidence 4 466666 899999999999888876222222222 55555443
No 220
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.4e-06 Score=73.48 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
...++|..++..|+|++|++.|.++++..+.. ..++.++|.+|...|++++|+..+.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888877654 2357778888888888888877777665432
Q ss_pred CC----------------------------------------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 67 PS----------------------------------------------MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 67 p~----------------------------------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
+. ...++.++|.++..+|+|.+|...++.++..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 11 1346677888888888888888888887764
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=2.2e-05 Score=58.67 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 33 PNSAELFADRAQASIKLQN---FTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 33 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
.-+....++.|.|+.+..+ ..+++..++..+..+|. .-.++|.+|..++++|+|.+|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4568999999999999865 45799999999998885 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 024778 109 LIKECEERIAEE 120 (262)
Q Consensus 109 ~l~~~~~~l~~~ 120 (262)
....++.++.+.
T Consensus 116 Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 116 LKSMVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999888654
No 222
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.1e-06 Score=73.65 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC----------------------------------------------CHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN----------------------------------------------SAE 37 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~----------------------------------------------~~~ 37 (262)
.+...|..++..|+|++|+++|.+++...+. .+.
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4566777777777777777777766653211 145
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
++.++|.+|...|+|.+|+..+..++... +....++...|.+|..+|+|.+|..+|++++...+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 67789999999999999999999988752 23457899999999999999999999999988643
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.25 E-value=9.7e-06 Score=62.26 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---C---
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEP---S--- 68 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~--- 68 (262)
.+++....++..|.|+.|+-+.+.++....++ ...++.+|.+++..++|..|...|++|+.... .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46888999999999999999999977764333 35788999999999999999999999876421 1
Q ss_pred -------------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 69 -------------------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 69 -------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..+..|++|.||..++++.+|+..++..-... ..+.+-+.|+++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakL 164 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANL 164 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHH
Confidence 12678999999999999999999987543222 234455555554
No 224
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.23 E-value=8.1e-06 Score=81.54 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----------------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------- 67 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---------------- 67 (262)
.+...|..++..|+|++|+.+|.+| ..|..+|.||.++|++++|++.+++|.....
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence 5678999999999999999999996 4788999999999999999999998854432
Q ss_pred ---------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 024778 68 ---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (262)
Q Consensus 68 ---------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (262)
.++..+..++..|...|.|++|+..|+.++.+++.+..+...+..+..
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 123345567777888999999999999999999887766655554433
No 225
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=98.09 E-value=8.2e-06 Score=57.77 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=56.5
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCC---------------Ceeeecccccccccc-----c
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE---------------EAYHFQPRLFGKVYM-----A 233 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~L~~~i~~-----~ 233 (262)
..+||+++++.+.|.+-+.|+.++++.|.+.++.|.|+-..... ..|...+.|...|++ +
T Consensus 5 P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~ 84 (100)
T 3gla_A 5 PRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAA 84 (100)
T ss_dssp CCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEE
T ss_pred CcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEE
Confidence 35899999999999999999999999999999999998543211 258888999999999 3
Q ss_pred e------EEEeecCC
Q 024778 234 Y------ILLFLKGL 242 (262)
Q Consensus 234 ~------i~l~K~~~ 242 (262)
| |+|.|++.
T Consensus 85 ~~~GvL~I~~pK~~~ 99 (100)
T 3gla_A 85 GRNGVLEIRIPKRPA 99 (100)
T ss_dssp EETTEEEEEEEBC--
T ss_pred EeCCEEEEEEecCCC
Confidence 3 89988763
No 226
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=98.08 E-value=6.3e-06 Score=58.64 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=58.1
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCCC----------Ceeeecccccccccc-----ce----
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE----------EAYHFQPRLFGKVYM-----AY---- 234 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~L~~~i~~-----~~---- 234 (262)
..+||+++++.+.|.+.+.|+.+++++|.+.++.|.|+-....+ ..|...+.|...|++ +|
T Consensus 7 P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~Gv 86 (102)
T 4fei_A 7 PAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGV 86 (102)
T ss_dssp CCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTE
T ss_pred CcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCE
Confidence 35899999999999999999999999999999999997533211 258888999999998 34
Q ss_pred --EEEeecCC
Q 024778 235 --ILLFLKGL 242 (262)
Q Consensus 235 --i~l~K~~~ 242 (262)
|+|.|+++
T Consensus 87 L~I~lpK~~~ 96 (102)
T 4fei_A 87 LTVRFEKLRP 96 (102)
T ss_dssp EEEEEEBSSC
T ss_pred EEEEEEccCc
Confidence 99999875
No 227
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.07 E-value=2.9e-05 Score=66.20 Aligned_cols=114 Identities=9% Similarity=-0.073 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCCHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWR 75 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~ 75 (262)
.+...+..++..|+.+.|.+.+.+..+.+|+ .......-|.+.+..| ++.+|+..|+++....|+.......
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lL 217 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHH
Confidence 4456778899999999999999999999983 2333333344466666 9999999999998888863333333
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhcc----------CCCCHHHHHHHHHHHHHHH
Q 024778 76 KATACMKLEEYETAKVALEKGASL----------APGDSRFTNLIKECEERIA 118 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~~a~~l----------~p~~~~~~~~l~~~~~~l~ 118 (262)
++ ++..+|++++|...++..+++ +|+++.+...+..+...++
T Consensus 218 ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 218 LN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp HH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred HH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 44 899999999999999988877 4888888766655555554
No 228
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.04 E-value=2.7e-05 Score=77.88 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 34 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
+.+.+|+++|.++...|++++|+..|.++ +++.+|++.|.++..+|+|++|+++|..+.+..++. .+...+..+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHH
Confidence 56888999999999999999999999776 788999999999999999999999999999887442 223334444
Q ss_pred HHHH
Q 024778 114 EERI 117 (262)
Q Consensus 114 ~~~l 117 (262)
..++
T Consensus 1177 YAKl 1180 (1630)
T 1xi4_A 1177 LAKT 1180 (1630)
T ss_pred HHhh
Confidence 4444
No 229
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.00 E-value=6.2e-05 Score=67.17 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----------------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---------------- 67 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---------------- 67 (262)
.+...|..++..|.|++|+.+|.++ ..|..+|.|+.++|+|++|++.++++. ++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence 4566677777777777777777765 346677777777777777777777762 22
Q ss_pred -----------CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 024778 68 -----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (262)
Q Consensus 68 -----------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (262)
.++.-...+...|...|++++|+..|+.++.+++....+...++.+..+
T Consensus 194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 1111222344678888999999999999999998887777766655443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=5e-05 Score=55.80 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHhhCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFEL---AYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (262)
+..|+.|.++.+.++... +|.++...++.. | ..-++++.+|..++++|+|.+|+..++.+++..|++.+|.-.+.
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788888888777666 999999999987 4 56789999999999999999999999999999999998877666
Q ss_pred HHHH
Q 024778 78 TACM 81 (262)
Q Consensus 78 ~~~~ 81 (262)
.+-.
T Consensus 116 ~i~~ 119 (126)
T 1nzn_A 116 LIDK 119 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.88 E-value=1.7e-05 Score=70.79 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~ 85 (262)
...+..+.+.|++.++.++|+. |+ ..++.++|.+++..|+|++|+..|.++ ..|.++|.++.++|+
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp -----------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 3456688889999999988853 44 458999999999999999999999977 368999999999999
Q ss_pred HHHHHHHHHHh
Q 024778 86 YETAKVALEKG 96 (262)
Q Consensus 86 ~~~A~~~~~~a 96 (262)
|++|+++++++
T Consensus 164 yq~AVea~~KA 174 (449)
T 1b89_A 164 YQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999999
No 232
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=4.1e-05 Score=68.41 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~ 68 (262)
+..+.+.|..+...|+|++|+.+|.++|.+ .+++ +..++++|.+|..+|++++|+..+++|+.+ .|+
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 567888999999999999999999999976 2344 577999999999999999999999999975 566
Q ss_pred CH---HHHHHHHHHHHHh
Q 024778 69 MS---KAYWRKATACMKL 83 (262)
Q Consensus 69 ~~---~a~~~~g~~~~~l 83 (262)
++ ..+.+++.+...+
T Consensus 409 Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 409 HSLIEDLILLLEECDANI 426 (429)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 65 3444555555443
No 233
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=97.79 E-value=6e-05 Score=53.38 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=56.0
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC---C-----Ceeeecccccccccc-----ce-------E
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKVYM-----AY-------I 235 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~---~-----~~~~~~~~L~~~i~~-----~~-------i 235 (262)
.|||++++.+.|.+-+.|+.+|+++|++.++.|.|+-.... + .+|...+.|...|++ +| |
T Consensus 4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I 83 (101)
T 2wj5_A 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI 83 (101)
T ss_dssp CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence 68999999999999999999999999999999999864321 1 248888999999999 23 8
Q ss_pred EEeecCC
Q 024778 236 LLFLKGL 242 (262)
Q Consensus 236 ~l~K~~~ 242 (262)
++.|.+.
T Consensus 84 ~lPK~~~ 90 (101)
T 2wj5_A 84 QATPASA 90 (101)
T ss_dssp EECBCCC
T ss_pred EEECCCc
Confidence 8888764
No 234
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=97.78 E-value=4.1e-05 Score=56.30 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=58.1
Q ss_pred cccccCCCCeEEEEEEecCCCCcceEEEEee-eEEEEEEecCCCC-----------eeeecccccccccc------ce--
Q 024778 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGE-QILSVSIDVPGEE-----------AYHFQPRLFGKVYM------AY-- 234 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~-~~~~~~~~~~~~~-----------~~~~~~~L~~~i~~------~~-- 234 (262)
.++|+++++.+.|.+.+.|+.+++++|.+.+ +.|+|+....... .|...+.|...|++ +|
T Consensus 26 ~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~ 105 (123)
T 3aab_A 26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN 105 (123)
T ss_dssp CEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET
T ss_pred cEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC
Confidence 5899999999999999999999999999999 9999997543221 68888899999998 23
Q ss_pred ----EEEeecCCC
Q 024778 235 ----ILLFLKGLI 243 (262)
Q Consensus 235 ----i~l~K~~~~ 243 (262)
|++.|.+..
T Consensus 106 GvL~I~lPK~~~~ 118 (123)
T 3aab_A 106 GVLTIRIPIAGTS 118 (123)
T ss_dssp TEEEEEEEGGGEE
T ss_pred CEEEEEEEcCCCC
Confidence 888887653
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.78 E-value=0.00029 Score=59.15 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHH---c--------cCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHh-----hcHHHHHHHH
Q 024778 32 SPNSAELFADRAQASIK---L--------QNFTEAVADANRAIELEPS--MSKAYWRKATACMKL-----EEYETAKVAL 93 (262)
Q Consensus 32 ~p~~~~~~~~~a~~~~~---~--------~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~l-----g~~~~A~~~~ 93 (262)
+|+++.+++-.|..... . +....|...++++++++|+ +..+|..+|..|... |+.+.|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 45567777777766643 1 2457899999999999999 567999999999996 9999999999
Q ss_pred HHhhccCCCC-HHHHHHHHH
Q 024778 94 EKGASLAPGD-SRFTNLIKE 112 (262)
Q Consensus 94 ~~a~~l~p~~-~~~~~~l~~ 112 (262)
+++++++|+. .......+.
T Consensus 228 erAL~LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHH
T ss_pred HHHHHhCCCCCchHHHHHHH
Confidence 9999999975 555544443
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.77 E-value=0.00045 Score=51.61 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHhhCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~---~~Ai~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..|+.|..+.+..+- .++|.++...++..|. .-++++.+|..++++|+|.+|.++++.+++..|++.++.-....
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4567788888776644 5799999999999884 56899999999999999999999999999999999988766655
Q ss_pred HHH
Q 024778 79 ACM 81 (262)
Q Consensus 79 ~~~ 81 (262)
+-.
T Consensus 120 Ie~ 122 (144)
T 1y8m_A 120 VED 122 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.76 E-value=0.00034 Score=51.59 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhh---CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (262)
Q Consensus 3 ~~l~~~g~~~~~~~---~~~~Ai~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (262)
+..|+.|.++.+.. +...+|.++...++..|. .-++++.+|..++++|+|.+|+++++.+++..|++.+|.-....
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 45677788887765 445799999999999884 47899999999999999999999999999999999988776665
Q ss_pred HHHHh
Q 024778 79 ACMKL 83 (262)
Q Consensus 79 ~~~~l 83 (262)
+-..+
T Consensus 121 Ie~ki 125 (134)
T 3o48_A 121 VEDKI 125 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 238
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=97.75 E-value=7.8e-05 Score=56.83 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=57.2
Q ss_pred ccccccCCCCeEEEEEEecCCCCcceEEEEe-eeEEEEEEecCC-----C----------Ceeeecccccccccc-----
Q 024778 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPG-----E----------EAYHFQPRLFGKVYM----- 232 (262)
Q Consensus 174 ~~~~~~q~~~~v~v~i~~k~~~~~~~~v~~~-~~~~~~~~~~~~-----~----------~~~~~~~~L~~~i~~----- 232 (262)
..+||+++++.++|.+.+.|+.+++++|++. ++.|+|+..... + ..|...+.|...|++
T Consensus 44 p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A 123 (151)
T 1gme_A 44 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 123 (151)
T ss_dssp GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred CceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEE
Confidence 5699999999999999999999999999995 679999864321 1 257888899999999
Q ss_pred ce------EEEeecCC
Q 024778 233 AY------ILLFLKGL 242 (262)
Q Consensus 233 ~~------i~l~K~~~ 242 (262)
+| |++.|.++
T Consensus 124 ~~~nGvL~I~lPK~~~ 139 (151)
T 1gme_A 124 GLENGVLTVTVPKAEV 139 (151)
T ss_dssp EEETTEEEEEEECCCC
T ss_pred EEECCEEEEEEEccCc
Confidence 34 99999874
No 239
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=97.70 E-value=9.3e-05 Score=57.02 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=57.4
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----------------CCeeeecccccccccc-----ce
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----------------EEAYHFQPRLFGKVYM-----AY 234 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----------------~~~~~~~~~L~~~i~~-----~~ 234 (262)
+|++++++.++|.+.+.|+.+|+|+|++.++.|+|+-.... -..|...+.|...|++ +|
T Consensus 59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~ 138 (161)
T 4eld_A 59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF 138 (161)
T ss_dssp EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence 89999999999999999999999999999999999864322 1267788899999999 33
Q ss_pred ------EEEeecCC
Q 024778 235 ------ILLFLKGL 242 (262)
Q Consensus 235 ------i~l~K~~~ 242 (262)
|+|.|++.
T Consensus 139 ~nGvL~I~lpK~~~ 152 (161)
T 4eld_A 139 ENGVLSVILPKAES 152 (161)
T ss_dssp ETTEEEEEEEBCGG
T ss_pred ECCEEEEEEEcCCC
Confidence 99999864
No 240
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=4.9e-05 Score=56.04 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=61.1
Q ss_pred cccccCCCCeEEEEEEecCCC--CcceEEEEeeeEEEEEEecCCCCeeeecccccccc-cc-----ce--------EEEe
Q 024778 175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKV-YM-----AY--------ILLF 238 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i-~~-----~~--------i~l~ 238 (262)
++.--|++++|+|.|.+..+. ..++.+.++++.+.++ -..|-+-|.|.|+| +. +| |+|.
T Consensus 5 ~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~-----~~PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp 79 (134)
T 2k8q_A 5 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFH-----LSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVA 79 (134)
T ss_dssp EEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEEC-----SSSSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEe-----cCCeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence 566779999999999999998 8999999999998887 34799999999999 44 44 9999
Q ss_pred ecCCC-CCCCcc
Q 024778 239 LKGLI-HHPFLD 249 (262)
Q Consensus 239 K~~~~-~W~~l~ 249 (262)
|..+| .|+.|.
T Consensus 80 K~~~Ge~F~dLD 91 (134)
T 2k8q_A 80 KLNKNEYFEDLD 91 (134)
T ss_dssp ESSTTCCCSSTT
T ss_pred CCCCCCCCCCcc
Confidence 99987 899985
No 241
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.69 E-value=6.3e-05 Score=67.30 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCC
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS 68 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-----~p~ 68 (262)
+..+.+.|..|...|+|++|+.+|.++|.+ .+++ +..+.++|.+|..+|+|++|+..+++|+.+ .|+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 567889999999999999999999999986 3344 577999999999999999999999999975 566
Q ss_pred CHH
Q 024778 69 MSK 71 (262)
Q Consensus 69 ~~~ 71 (262)
++.
T Consensus 420 Hp~ 422 (433)
T 3qww_A 420 HPY 422 (433)
T ss_dssp CHH
T ss_pred ChH
Confidence 654
No 242
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.00019 Score=62.48 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 71 (262)
.+...|..++..|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|++|+.++|....
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3444566677789999999999999999964 778889999999999999999999999999997754
No 243
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=97.58 E-value=0.00014 Score=51.94 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=56.1
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEec----CCC----Ceeeecccccccccc-----ce-------E
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV----PGE----EAYHFQPRLFGKVYM-----AY-------I 235 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~----~~~----~~~~~~~~L~~~i~~-----~~-------i 235 (262)
.+++++++.+.|.+-+.|+.+|++.|++.++.|.|+-.. .++ .+|...+.|...|++ +| |
T Consensus 5 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I 84 (106)
T 3l1e_A 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTF 84 (106)
T ss_dssp EEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEE
T ss_pred eEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEE
Confidence 478999999999999999999999999999999998532 111 348888999999999 33 8
Q ss_pred EEeecCC
Q 024778 236 LLFLKGL 242 (262)
Q Consensus 236 ~l~K~~~ 242 (262)
+|.|.++
T Consensus 85 ~~PK~~~ 91 (106)
T 3l1e_A 85 SGPKIPS 91 (106)
T ss_dssp EEEBCCC
T ss_pred EEEccCc
Confidence 9999875
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.53 E-value=0.0015 Score=57.36 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 61 (262)
.+...|......++...|+..|.+|+.+..-. ..+...++.++...|++.+|+..+..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44566667777899999999999999985321 13345577778889999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 62 al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
++..+|-+-.+|..+-.+|+..|+..+|+..|+++..
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765
No 245
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=97.35 E-value=0.00087 Score=45.68 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=46.0
Q ss_pred cCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC--------CCeeeecccccccccc
Q 024778 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------EEAYHFQPRLFGKVYM 232 (262)
Q Consensus 179 ~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~i~~ 232 (262)
.++++.+.|.+-+.|+.+|+++|.+.++.|+|+-.... ...|...+.|...|++
T Consensus 3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~ 64 (85)
T 3q9p_A 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDP 64 (85)
T ss_dssp CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCG
T ss_pred cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcCh
Confidence 46889999999999999999999999999999864321 1368899999999998
No 246
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.35 E-value=0.0013 Score=61.97 Aligned_cols=98 Identities=5% Similarity=0.002 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
|...+....+.|+.+.|...|.+|++. .+....+|...|....+.+ +++.|...|+.+++..|.+...+..++..+..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 455566667788999999999999987 4445677777777776665 48999999999999999999888888888888
Q ss_pred hhcHHHHHHHHHHhhccCCC
Q 024778 83 LEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~ 102 (262)
.|+.+.|...|++++...|+
T Consensus 517 ~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998874
No 247
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.22 E-value=0.002 Score=60.73 Aligned_cols=106 Identities=7% Similarity=0.022 Sum_probs=88.5
Q ss_pred HHHHHHHHh-hCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Q 024778 7 KKAKEAFID-DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK 82 (262)
Q Consensus 7 ~~g~~~~~~-~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~ 82 (262)
..|...+.. ++++.|...|..+|+..|+++.++...+......|+.+.|...|++|+...|+ ....|..+...-..
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 334434444 45999999999999999999999999999888999999999999999999883 44566677777778
Q ss_pred hhcHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 024778 83 LEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (262)
.|+.+.+...++++.+..|+++.+.....+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r 583 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPEVNKLEEFTNK 583 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 899999999999999999998876666544
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.0018 Score=49.67 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC----------------------CHHHHHHHHHHHHHccCHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS---PN----------------------SAELFADRAQASIKLQNFTEAVA 57 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~---p~----------------------~~~~~~~~a~~~~~~~~~~~A~~ 57 (262)
+.+...|+.+|..++|..|...|.+||... +. +.++.+.+|.||.+++++.+|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 467889999999999999999999998651 11 13788999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Q 024778 58 DANRAIELEPSMSKAYWRKATAC 80 (262)
Q Consensus 58 ~~~~al~l~p~~~~a~~~~g~~~ 80 (262)
.++.. -..-..++..+.+|..|
T Consensus 144 ~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 144 ILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHhcC-CchhcCHHHHHHHHHHh
Confidence 87532 12234566777777654
No 249
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0017 Score=46.16 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=59.5
Q ss_pred cccccCCCCeEEEEEEecCCC--CcceEEEEeeeEEEEEEecCCCCeeeecccccccccc------ce--------EEEe
Q 024778 175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKVYM------AY--------ILLF 238 (262)
Q Consensus 175 ~~~~~q~~~~v~v~i~~k~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~------~~--------i~l~ 238 (262)
++.--|+++.|+|.|.+..+. ..++.+.++++.+.+.. +.|-+-|.|.|+|.. +| |+|.
T Consensus 19 ~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~-----~PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 19 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHL-----SPYYLRLRFPHELIDDERSTAQYDSKDECINVKVA 93 (115)
T ss_dssp CEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEE-----TTEEEEEECSSCEECSTTCEEEEETTTTEEEEEEE
T ss_pred cEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEec-----CCeEEEEecCcceecCCCcceEEeCCCcEEEEEEc
Confidence 577789999999999999876 77899999999998884 478999999999965 34 9999
Q ss_pred ecCCC-CCCCcc
Q 024778 239 LKGLI-HHPFLD 249 (262)
Q Consensus 239 K~~~~-~W~~l~ 249 (262)
|..+| ..+.|.
T Consensus 94 K~~~GE~F~dLD 105 (115)
T 3eud_A 94 KLNKNEYFEDLD 105 (115)
T ss_dssp ESSTTCCCCCTT
T ss_pred CCcCCCcCCCcc
Confidence 99987 677764
No 250
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=97.13 E-value=0.00076 Score=46.51 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=47.7
Q ss_pred CCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC---C-----Ceeeecccccccccc-----ce-------EEEee
Q 024778 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKVYM-----AY-------ILLFL 239 (262)
Q Consensus 180 q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~---~-----~~~~~~~~L~~~i~~-----~~-------i~l~K 239 (262)
++++.+.|.+-+.|+.++++.|.+.++.|+|+..... + .+|...+.|...|++ +| |+|.|
T Consensus 3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK 82 (90)
T 2y1y_A 3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR 82 (90)
T ss_dssp ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence 4678899999999999999999999999999864211 1 258888999999999 23 88888
Q ss_pred cCC
Q 024778 240 KGL 242 (262)
Q Consensus 240 ~~~ 242 (262)
.+.
T Consensus 83 ~~~ 85 (90)
T 2y1y_A 83 KQV 85 (90)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 251
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=97.03 E-value=0.00085 Score=52.27 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=52.5
Q ss_pred ccccCCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEecCC---C-----Ceeeecccccccccc-----ce-------E
Q 024778 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKVYM-----AY-------I 235 (262)
Q Consensus 176 ~~~~q~~~~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~---~-----~~~~~~~~L~~~i~~-----~~-------i 235 (262)
.+++++++.++|.+-+.|+.+|+++|++.++.|+|+-.... + .+|...+.|...|++ +| |
T Consensus 66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I 145 (175)
T 2klr_A 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV 145 (175)
T ss_dssp ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence 58999999999999999999999999999999999863211 1 248888999999999 23 8
Q ss_pred EEeecCC
Q 024778 236 LLFLKGL 242 (262)
Q Consensus 236 ~l~K~~~ 242 (262)
++.|++.
T Consensus 146 ~lPK~~~ 152 (175)
T 2klr_A 146 NGPRKQV 152 (175)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 8999864
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.01 E-value=0.0086 Score=49.53 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=58.7
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 71 (262)
...+++.|+.++|+......++.+|.|+.....+...++-.|+|+.|...++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 346789999999999999999999999999999999999999999999999999999998653
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.93 E-value=0.021 Score=43.05 Aligned_cols=100 Identities=16% Similarity=-0.022 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH
Q 024778 5 LEKKAKEAFIDDYF------ELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 5 l~~~g~~~~~~~~~------~~Ai~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 70 (262)
++.-...+-..|+. +.-++.|.+|+..-|.. ..+|...|.. ...++.++|.+.|+.++.+....+
T Consensus 16 W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFA 94 (161)
T 4h7y_A 16 WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFA 94 (161)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBH
T ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHH
Confidence 44444455555777 88889999999987754 4566666644 566999999999999999988888
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
..|...|.--.+.|+...|...+.+++.+.|...+
T Consensus 95 Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 95 FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 89999999888999999999999999999997654
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0029 Score=60.13 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
.++..-+..++..|+|+.|+..+.+|+.+.|....+|++++.+|..+|+|+.|+-.+..|-
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4566667777788999999999999999999999999999999999999999999998885
No 255
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.74 E-value=0.035 Score=50.22 Aligned_cols=101 Identities=11% Similarity=-0.109 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------------
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA-------------------------------------- 45 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~-------------------------------------- 45 (262)
.++..+..+...|+.+.|...|.+|+.. |.+..++...+..
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 4556666677778888888888888888 8775444333222
Q ss_pred --HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHhhccCCCCHHH
Q 024778 46 --SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRF 106 (262)
Q Consensus 46 --~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~a~~l~p~~~~~ 106 (262)
..+.+..+.|...|.+| ...+.....|...|...+.++ +.+.|...|+.+++..|+++.+
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 22345667777777777 333334556666676666666 4888888888888877776654
No 256
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=96.61 E-value=0.0051 Score=52.34 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=58.8
Q ss_pred ccccccCCCC----eEEEEEEecCCCCcceEEEEeeeEEEEEEecCC----C---Ceeeecccccccccc-----ce---
Q 024778 174 YRHEFYQKPE----EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---EAYHFQPRLFGKVYM-----AY--- 234 (262)
Q Consensus 174 ~~~~~~q~~~----~v~v~i~~k~~~~~~~~v~~~~~~~~~~~~~~~----~---~~~~~~~~L~~~i~~-----~~--- 234 (262)
+..|.|++++ .++|.+-+.|+.||+++|++.++.|+|+-.... + ..|...+.|...|++ +|
T Consensus 99 p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n 178 (314)
T 2bol_A 99 FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD 178 (314)
T ss_dssp GGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS
T ss_pred CccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC
Confidence 4688999999 999999999999999999999999999864321 1 469999999999999 23
Q ss_pred ----EEEeecCCC
Q 024778 235 ----ILLFLKGLI 243 (262)
Q Consensus 235 ----i~l~K~~~~ 243 (262)
|++.|.++.
T Consensus 179 GVL~I~lPK~~~~ 191 (314)
T 2bol_A 179 DVLVIEAPVNEPN 191 (314)
T ss_dssp SEEEEEEEBSSCC
T ss_pred CEEEEEEeccCcc
Confidence 899998754
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.39 E-value=0.028 Score=50.92 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 38 ~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
++..+|.+......+..|..+|.+|+.+.|.+..+|..+|.+....|++-+|.-+|.+++......+.+...+..+..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56678888888888999999999999999999999999999999999999999999999987766777888777766655
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.014 Score=55.52 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 62 (262)
-+..++..+..+|+|+-|+.+..+|+...|.+...|+.++.||..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35667888899999999999999999999999999999999999999999998665443
No 259
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.09 E-value=0.13 Score=46.32 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~l 83 (262)
+...+....+.++.+.|...|.+| ...+.....+...|..-+..+ +.+.|...++.++...|+.+..+..++.....+
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 344455555788899999999999 443345677777787777777 599999999999999999888888888888899
Q ss_pred hcHHHHHHHHHHhh
Q 024778 84 EEYETAKVALEKGA 97 (262)
Q Consensus 84 g~~~~A~~~~~~a~ 97 (262)
|+.+.|...|+++.
T Consensus 368 ~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 368 GDEENARALFKRLE 381 (493)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999873
No 260
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.63 E-value=0.27 Score=44.43 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMK 82 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~~g~~~~~ 82 (262)
+...-..+.+.|++++|..+|.+..+.. .-+...|..+-.+|.+.|++++|...++......- .+...|..+-.+|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 3445567889999999999999987753 33577788888899999999999999998887642 255678888899999
Q ss_pred hhcHHHHHHHHHHhhcc--CCCCH
Q 024778 83 LEEYETAKVALEKGASL--APGDS 104 (262)
Q Consensus 83 lg~~~~A~~~~~~a~~l--~p~~~ 104 (262)
.|+.++|...|++..+. .|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999988764 45443
No 261
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.56 E-value=0.36 Score=37.20 Aligned_cols=92 Identities=10% Similarity=-0.003 Sum_probs=67.2
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--c--C-------------CCCHH
Q 024778 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--L--E-------------PSMSK 71 (262)
Q Consensus 9 g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l--~-------------p~~~~ 71 (262)
+-.++-.|.|..++-.+.. -+-....+..+.||.++++|..|+..++..+. . + |.+-+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 3445556666666554432 34467777889999999999999999999983 2 2 33443
Q ss_pred -HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 72 -AYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 72 -a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+..+|..+...|+.++|+.+|.+....+|-.+.
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 4556899999999999999999999888775443
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.56 E-value=0.089 Score=47.62 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (262)
-+...|+.+.-...+..|..+|.+|+.+.|.++..+..+|.+....|+.-+|+-+|.+++........+.-++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3566788888888899999999999999999999999999999999999999999999998776677777776666654
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.098 Score=46.40 Aligned_cols=97 Identities=5% Similarity=-0.068 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCH----HHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELEP--SMS----KAYW 74 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~~~----~a~~ 74 (262)
.+..+|..+++.||++.|+++|.++...... -..++.....+++..+++..+...+.++..+.. .++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4568899999999999999999998876432 367888888899999999999999999876522 222 3445
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccC
Q 024778 75 RKATACMKLEEYETAKVALEKGASLA 100 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~ 100 (262)
..|.++...++|.+|...|..++.-.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 67888888999999999988776543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.34 E-value=0.17 Score=44.31 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----C--C-CHHHH
Q 024778 7 KKAKEAFIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELE----P--S-MSKAY 73 (262)
Q Consensus 7 ~~g~~~~~~~~~~~Ai~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~----p--~-~~~a~ 73 (262)
..|..++..|+|.+|+.++.+.++.-.. + .+.+......|..++++..+...+..|.... + . .+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6789999999999999999998875221 2 4677888899999999999999998886543 1 1 12445
Q ss_pred HHHHHHHH-HhhcHHHHHHHHHHhhc
Q 024778 74 WRKATACM-KLEEYETAKVALEKGAS 98 (262)
Q Consensus 74 ~~~g~~~~-~lg~~~~A~~~~~~a~~ 98 (262)
..-|.++. ..++|..|..+|-.+++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 66788888 89999999999988874
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.42 E-value=0.19 Score=43.81 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+...+..++..|++.+|+..+..++..+|-+..++..+-.+|...|+..+|+..|+++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788999999999999999999999999999999999999999999999987654
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.40 E-value=0.23 Score=40.96 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=57.7
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH
Q 024778 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (262)
Q Consensus 45 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~ 107 (262)
.+++.|++.+|+..+...++.+|.+......+...+.-.|+|+.|...++.+.+++|......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999875544
No 267
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.91 E-value=1.1 Score=40.41 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=72.0
Q ss_pred hhCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhcHHHHHHH
Q 024778 15 DDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEEYETAKVA 92 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~lg~~~~A~~~ 92 (262)
.++.+.|.++|.+..... .-|...|..+-.+|.+.|++++|+..++...... ..+...|..+-.+|...|+.++|...
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 345788999999877653 2357788889999999999999999999887754 23667788888899999999999999
Q ss_pred HHHhhcc--CCCCH
Q 024778 93 LEKGASL--APGDS 104 (262)
Q Consensus 93 ~~~a~~l--~p~~~ 104 (262)
|+...+. .|+..
T Consensus 163 ~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 163 DAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCCCHH
Confidence 9988764 45543
No 268
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=93.65 E-value=0.15 Score=43.29 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=42.7
Q ss_pred CCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEecCCC-----------Ceeeecccccccccc
Q 024778 181 KPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGE-----------EAYHFQPRLFGKVYM 232 (262)
Q Consensus 181 ~~~~v~v~i~~-k~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~i~~ 232 (262)
++..++|.+.+ .|+.||+++|+++++.|+|+-.-... ..|..++.|...|++
T Consensus 231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~ 294 (314)
T 2bol_A 231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDA 294 (314)
T ss_dssp SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECG
T ss_pred CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcCh
Confidence 55678888888 99999999999999999998643211 248899999999999
No 269
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.50 E-value=0.81 Score=34.40 Aligned_cols=60 Identities=15% Similarity=-0.036 Sum_probs=54.0
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 71 (262)
+...+|.++|.+.|+.++.+....+.+|...|..-.+.|+...|...+.+|+.+.|...+
T Consensus 70 ~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 70 LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 356689999999999999997777899999999999999999999999999999987654
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.07 E-value=1.9 Score=38.27 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHH---cCCCC----HH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS--PNS----AELFADRAQASIKLQNFTEAVADANRAIE---LEPSM----SK 71 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~--p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~p~~----~~ 71 (262)
-...+..+...|+|.+|...+....... ..+ .+++......|+..+++..|...+.++.. -.+.. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3567889999999999999999876532 112 46778888899999999999999988642 12222 24
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.+...|..+...++|.+|-.+|..++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5677888999999999999998887753
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.95 E-value=2.5 Score=32.58 Aligned_cols=64 Identities=9% Similarity=-0.028 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIE--I---------------SPNSAE-LFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~--~---------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
..+-.+.++...++|..|+.+++..|. + +|.+.+ .+..+|..+.++|+-++|+.++......
T Consensus 64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 445667889999999999999999993 2 233444 4566888888999999999999988877
Q ss_pred CC
Q 024778 66 EP 67 (262)
Q Consensus 66 ~p 67 (262)
++
T Consensus 144 ~~ 145 (242)
T 3kae_A 144 SF 145 (242)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.22 E-value=0.53 Score=46.96 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-----------------------PNSAELFADRAQASIKLQNFTEAVADANR 61 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~-----------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 61 (262)
-+.+|..++..|++++|..+|.+|-..- ..-+.+|......+.+.+.++.+++....
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678999999999999999998873211 01145677788888889999999999999
Q ss_pred HHHcCCC-CH----HHHHHHHHHHHHhhcHHHHHHHHHHh
Q 024778 62 AIELEPS-MS----KAYWRKATACMKLEEYETAKVALEKG 96 (262)
Q Consensus 62 al~l~p~-~~----~a~~~~g~~~~~lg~~~~A~~~~~~a 96 (262)
|+...+. +. ..|.++-..+..+|+|++|...+...
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9987643 32 25778888999999999998777543
No 273
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.87 E-value=2.1 Score=32.90 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=58.9
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CCHHH-------
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKA------- 72 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~a------- 72 (262)
+=..++..|+++.|.+...+. ++...|..+|...+..|+++-|..+|.++-..+. .+..-
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345678889999998887664 5678899999999999999988888875532211 12121
Q ss_pred ------HHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 73 ------YWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 73 ------~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
+.....+++.+|+++++++.|.+.-.
T Consensus 86 A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 86 AQTREDFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 22234566678888888887765543
No 274
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.79 E-value=1 Score=42.34 Aligned_cols=46 Identities=24% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024778 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 62 (262)
++..|+++.|.++.. .-++...|..+|..+.+.++++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555432 2356788999999999999999999988875
No 275
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.20 E-value=1.6 Score=33.62 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHH------H
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYW------R 75 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~------~ 75 (262)
.|...|..++..|+++-|..+|.++= |.. .+...|.-.|+-+.-....+.+...+..+. .+++ .
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~---~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~ 107 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQH-----SFD---KLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKE 107 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT-----CHH---HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhC-----CHH---HHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHH
Confidence 57889999999999999999998852 222 333344445665554444444443332222 1222 2
Q ss_pred HHHHHHHhhcHHHHHHHHH
Q 024778 76 KATACMKLEEYETAKVALE 94 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~~ 94 (262)
...+|...|++.+|....+
T Consensus 108 ~i~lL~~~~r~~eA~~~A~ 126 (177)
T 3mkq_B 108 RSSIFAEGGSLPLAYAVAK 126 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHH
Confidence 4456778899998876554
No 276
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.60 E-value=4.4 Score=37.87 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQA 28 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~a 28 (262)
..|...|..+.+.++++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35788999999999999999999985
No 277
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.33 E-value=5.9 Score=39.05 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATA 79 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~ 79 (262)
+...-+.+.+.|+.++|..+|.+.-+ ...-|...|..+-..|++.|++++|+..|+...... ..+...|..+-.+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 44556778999999999999976432 223457888899999999999999999999887754 2356677777778
Q ss_pred HHHhhc-HHHHHHHHHHhhccC
Q 024778 80 CMKLEE-YETAKVALEKGASLA 100 (262)
Q Consensus 80 ~~~lg~-~~~A~~~~~~a~~l~ 100 (262)
+.+.|+ .++|...|+......
T Consensus 210 lcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 210 MGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHcC
Confidence 888887 578889998888754
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.10 E-value=6 Score=34.50 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=55.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHhhccC---CCCHHHHHHH
Q 024778 40 ADRAQASIKLQNFTEAVADANRAIEL----EPS--MSKAYWRKATACMKLEEYETAKVALEKGASLA---PGDSRFTNLI 110 (262)
Q Consensus 40 ~~~a~~~~~~~~~~~A~~~~~~al~l----~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~---p~~~~~~~~l 110 (262)
..+|..|+..|+|.+|+..+.+.+.- +.. ..+.+..-..+|..++++..+...|.++.... +.++.....+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999988887763 222 24678888999999999999999999887653 2445544444
Q ss_pred HHH
Q 024778 111 KEC 113 (262)
Q Consensus 111 ~~~ 113 (262)
..+
T Consensus 183 ~~~ 185 (394)
T 3txn_A 183 DLQ 185 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.13 E-value=1.5 Score=39.69 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
+.++..+-..|+..+.|+.|.....++. .|.. ...+|.+|.++.-.++|.+|..+|..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 5667778888889999999999999885 3321 3567788999999999999999999999988754
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=86.93 E-value=4.1 Score=30.77 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEIS 32 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~ 32 (262)
+..|..+|+.|+|-+|-+.+..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 344444555555555555555544443
No 281
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.21 E-value=5.8 Score=29.40 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=25.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 49 LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 49 ~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
.|+-+.--+.+...+.-.+-++..++.+|.+|..+|+-.+|.+.+.+|.+.
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344433333333333334444556666666666666666666666665553
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=84.56 E-value=2.9 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF 39 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~ 39 (262)
...|..+...|++++|+.+|-.||...|+-..++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777777777777777777777777655443
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.06 E-value=18 Score=32.62 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
.-..|+..+.|++|..+..++. .|.+ ..+++..|.++...++|.+|..++..|+...|.
T Consensus 237 lLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 237 ILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3455677788888888888874 3432 566777888888888888888888888877654
No 284
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=81.93 E-value=3.1 Score=38.93 Aligned_cols=52 Identities=27% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~ 87 (262)
......+|...+..|+|.-|...++.++..+|++..+...++.+|.++|.-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 5566678888888888888888888888888888888888888888888764
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=81.64 E-value=2.3 Score=28.30 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAI 29 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al 29 (262)
..+|..+=..|+|++|+.+|.+++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 333333444444444444444433
No 286
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.06 E-value=10 Score=37.80 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=66.1
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---C--------------------
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL---E-------------------- 66 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l---~-------------------- 66 (262)
..++..+.++.+.+ .+...+.++...+.+|.+|+..|++++|..+|.++-.. +
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34556666655443 34456778888899999999999999999999876321 0
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC-CCHH
Q 024778 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP-GDSR 105 (262)
Q Consensus 67 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p-~~~~ 105 (262)
......|+.....+...+.++.++.+.+.|++..+ ++..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 11234566667777788999999999999998664 4443
No 287
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=80.64 E-value=2.6 Score=28.00 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 024778 20 LAYDLYSQAIE 30 (262)
Q Consensus 20 ~Ai~~~~~al~ 30 (262)
.|+.+..+|+.
T Consensus 10 ~Ai~lv~~Ave 20 (83)
T 2v6y_A 10 MARKYAILAVK 20 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.29 E-value=14 Score=34.15 Aligned_cols=51 Identities=10% Similarity=-0.115 Sum_probs=25.3
Q ss_pred HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 48 KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
+.+++..|..++...-..........|-+|.++..+|+.++|...|+.+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345555555555433222222344455555555555555555555555543
No 289
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=79.58 E-value=2.9 Score=27.98 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
.+..+|..+-..|+|++|+.+|..++.
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.08 E-value=3.6 Score=36.16 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
..++..+|..|+..|++++|++.|.++..... .....++....++...++|..+...+.++..+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45788999999999999999999999876532 23578888889999999999999999998765
No 291
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=77.97 E-value=9.8 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAI 63 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 63 (262)
+..+..-|.-+++.++|.+|+..++++.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3334444444444445555544444444
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.22 E-value=31 Score=28.88 Aligned_cols=27 Identities=4% Similarity=-0.239 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 68 SMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
.++..|..+|..+..-|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367889999999999999999998885
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.17 E-value=4.5 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQA 28 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~a 28 (262)
.+-.++..+...|.|++||++..+|
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3344555555555555555554443
No 294
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.88 E-value=4.6 Score=27.40 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 024778 20 LAYDLYSQAIE 30 (262)
Q Consensus 20 ~Ai~~~~~al~ 30 (262)
.|+.+..+|+.
T Consensus 14 ~Ai~lv~~Ave 24 (93)
T 1wfd_A 14 AAVAVLKRAVE 24 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.82 E-value=22 Score=34.69 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=69.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCC-------------------
Q 024778 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE-LEP------------------- 67 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-l~p------------------- 67 (262)
....+...+.++-|. +.+.-.|.++..-+-+|.+|+..|++++|..+|++|-. +..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 445666677766443 34566788888888999999999999999999987642 111
Q ss_pred -C--CHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc-CCCCHHHH
Q 024778 68 -S--MSKAYWRKATACMKLEEYETAKVALEKGASL-APGDSRFT 107 (262)
Q Consensus 68 -~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l-~p~~~~~~ 107 (262)
. ....|+.....+...+-|+-++.+.+.|+.. .++++...
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~ 935 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLS 935 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccch
Confidence 1 1235667777788889999999999999974 45565543
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=74.72 E-value=31 Score=29.04 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCC----CC----HHH--HHHHHHHHHHccCHHH---------HHHHHHHHH--
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----NS----AEL--FADRAQASIKLQNFTE---------AVADANRAI-- 63 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p----~~----~~~--~~~~a~~~~~~~~~~~---------A~~~~~~al-- 63 (262)
.++.|..++..|++.+|+..|..+|..-+ ++ .++ +...+.-|..-=..+. ..+.++.+-
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 46789999999999999999999998632 11 111 2222222211000111 111121111
Q ss_pred ---HcCCCCHHHHHHHH-HHHHHhhcHHHHHHHHHHhhccCCCCHH
Q 024778 64 ---ELEPSMSKAYWRKA-TACMKLEEYETAKVALEKGASLAPGDSR 105 (262)
Q Consensus 64 ---~l~p~~~~a~~~~g-~~~~~lg~~~~A~~~~~~a~~l~p~~~~ 105 (262)
.+.|.+...-++.| ...++.++|..|..+.++.+++.|..+.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 11222222222333 3567889999999999999999996543
No 297
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=74.69 E-value=4.8 Score=26.69 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=8.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH
Q 024778 8 KAKEAFIDDYFELAYDLYSQAI 29 (262)
Q Consensus 8 ~g~~~~~~~~~~~Ai~~~~~al 29 (262)
+|...=..|+|++|+.+|..++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444333
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.18 E-value=9.8 Score=35.25 Aligned_cols=116 Identities=12% Similarity=-0.068 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCH-HHH-HH--HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELF-AD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~-~~--~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (262)
.+...+...+..++.+.|...|...-....-+. ... .. +|.-+...+...++...+........+.....++.+.+
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH
Confidence 455667777788899999999988765543332 222 22 22222223435677777777665554444444555555
Q ss_pred HHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 024778 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (262)
+ ..|++..|...|.....-.........|+++....+++.
T Consensus 296 l-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~ 335 (618)
T 1qsa_A 296 L-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE 335 (618)
T ss_dssp H-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred H-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCH
Confidence 4 569999999999877654445567788888876665543
No 299
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=73.87 E-value=9.2 Score=25.97 Aligned_cols=29 Identities=0% Similarity=-0.135 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN 34 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~ 34 (262)
+..|..+|+.|+|-+|-+.+..+....+.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 45677778888888888888887777643
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=73.85 E-value=4.7 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHh
Q 024778 18 FELAYDLYSQAIEI 31 (262)
Q Consensus 18 ~~~Ai~~~~~al~~ 31 (262)
...|+.++.+|+..
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777776543
No 301
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.84 E-value=4.6 Score=27.35 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhh
Q 024778 73 YWRKATACMKLEEYETAKVALEKGA 97 (262)
Q Consensus 73 ~~~~g~~~~~lg~~~~A~~~~~~a~ 97 (262)
+-+++..+...|+|++|+.+.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4455555555555555555444443
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.78 E-value=8 Score=34.37 Aligned_cols=88 Identities=5% Similarity=-0.085 Sum_probs=61.7
Q ss_pred hCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--C--------C
Q 024778 16 DYFELAYDLYSQAIEISPNS----------------AELFADRAQASIKLQNFTEAVADANRAIELEP--S--------M 69 (262)
Q Consensus 16 ~~~~~Ai~~~~~al~~~p~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p--~--------~ 69 (262)
...+.+.....++....-++ .....++-.+|+++++...+...+...-.... . .
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 45566777777777762221 11234466788899998888777754332221 1 2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhcc-CCCC
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASL-APGD 103 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l-~p~~ 103 (262)
...+|.+|..+...++|.+|..+|..|+.. .|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 357889999999999999999999999998 7754
No 303
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.87 E-value=5.7 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS 35 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~ 35 (262)
...|..++..|+++.|+.+|-.||.+.|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345666666666666666666666666553
No 304
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=71.53 E-value=11 Score=29.51 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHccCHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL-----FADRAQASIKLQNFT 53 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~a~~~~~~~~~~ 53 (262)
...+-.|..++.+++|.+|.+.+.+|++..|.+... +..+--+-+.+|++.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456778999999999999999999999998876432 222333334456643
No 305
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.55 E-value=24 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHHHHHhhcHHHHHHHH
Q 024778 76 KATACMKLEEYETAKVAL 93 (262)
Q Consensus 76 ~g~~~~~lg~~~~A~~~~ 93 (262)
+...+.+.|+|++|....
T Consensus 46 R~sSLmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQG 63 (116)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhc
Confidence 334444445555444333
No 306
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.91 E-value=15 Score=23.61 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHH
Q 024778 74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (262)
Q Consensus 74 ~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~ 108 (262)
..+|..+...|++++|..+|-+|+...|.-..+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677777777777777777777777665444433
No 307
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=67.15 E-value=22 Score=23.20 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHHHH
Q 024778 72 AYWRKATACMKLEEYETAKVALEKGASL------APGDSRFTNLIKECEERIAE 119 (262)
Q Consensus 72 a~~~~g~~~~~lg~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~l~~ 119 (262)
-...+|+=|..+|+|+.|+.+|+.++.. .-+|+..+..-..+...+..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~ 67 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINV 67 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHH
Confidence 3567788888888888888888877652 22354444433444444443
No 308
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.94 E-value=23 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=8.4
Q ss_pred HHHHHHHHccCHHHHHH
Q 024778 41 DRAQASIKLQNFTEAVA 57 (262)
Q Consensus 41 ~~a~~~~~~~~~~~A~~ 57 (262)
-|...++..|+|++|+.
T Consensus 44 IR~sSLmNrG~Yq~Al~ 60 (115)
T 2uwj_G 44 IRISSLANQGRYQEALA 60 (115)
T ss_dssp HHHHHHHHTTCHHHHHG
T ss_pred HHHHHHHcchhHHHHHH
Confidence 34444455555555544
No 309
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=65.43 E-value=16 Score=33.99 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (262)
.......|...+..|+|..|.+.+..++..+|+|.+++..++.+.++++....
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 34677889999999999999999999999999999999999999999986543
No 310
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=65.23 E-value=5.9 Score=26.59 Aligned_cols=22 Identities=5% Similarity=0.076 Sum_probs=10.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHH
Q 024778 39 FADRAQASIKLQNFTEAVADAN 60 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~ 60 (262)
|+.-|.-|+..|++..|+.++.
T Consensus 42 Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 42 YRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555555555555554443
No 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=64.63 E-value=63 Score=27.14 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCC----CC----HHH--HHHHHHHHHH-----c--cC-----HHHHHHHHHHH
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----NS----AEL--FADRAQASIK-----L--QN-----FTEAVADANRA 62 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~~p----~~----~~~--~~~~a~~~~~-----~--~~-----~~~A~~~~~~a 62 (262)
.++.|..++..|++.+|+..|..+|..-| ++ .++ +..++.-|.. + .+ .++-.+.++.+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 56889999999999999999999998654 22 111 2222222211 1 11 12222223322
Q ss_pred HH-----cCCCCHHHHHHHH-HHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Q 024778 63 IE-----LEPSMSKAYWRKA-TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (262)
Q Consensus 63 l~-----l~p~~~~a~~~~g-~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (262)
-- +.|.+...-++.| ...++.++|..|..+.++.+++.|.. .......++....
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~~~~qArkil~~c 244 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-EVAQQTRKILSAC 244 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHH
Confidence 21 1222222222333 35678899999999999999998863 3334444444433
No 312
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.59 E-value=41 Score=24.93 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHhhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 024778 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 66 (262)
...|.-++--+.+...+...+-++.+++.+|.+|.++|+..+|-..+.+|.+..
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344555555555555455555556666666666666666666666666665443
No 313
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=64.49 E-value=6.2 Score=26.39 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHH
Q 024778 1 MATDLEKKAKEAFIDDYFELAYDLYSQ 27 (262)
Q Consensus 1 ma~~l~~~g~~~~~~~~~~~Ai~~~~~ 27 (262)
||+.+++-|..++..||+..|+.++.=
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isY 60 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVW 60 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466677777777777777777766543
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.57 E-value=31 Score=33.60 Aligned_cols=65 Identities=8% Similarity=-0.074 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHh-CCC----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024778 6 EKKAKEAFIDDYFELAYDLYSQAIEI-SPN----------------------SAELFADRAQASIKLQNFTEAVADANRA 62 (262)
Q Consensus 6 ~~~g~~~~~~~~~~~Ai~~~~~al~~-~p~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 62 (262)
+.+|..++..|++++|..+|.+|-.. ... ...+|.....++.+.+-++-++..++.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67899999999999999999876521 111 1247788888888999999999999999
Q ss_pred HHcC-CCCH
Q 024778 63 IELE-PSMS 70 (262)
Q Consensus 63 l~l~-p~~~ 70 (262)
+... +++.
T Consensus 924 I~~~~~dd~ 932 (950)
T 4gq2_M 924 DASKETDDE 932 (950)
T ss_dssp HHTCCSCCH
T ss_pred HhhcccCCc
Confidence 9754 3443
No 315
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=63.20 E-value=18 Score=28.18 Aligned_cols=35 Identities=14% Similarity=-0.049 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 70 (262)
...++.+|..++..++|.+|..++..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 46788999999999999999999999999887653
No 316
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.69 E-value=17 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 50 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
..|+.|..+..++|.+|.. |.-...+..|..++..|++++.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 4467777777888777652 3334444555666677777777655
No 317
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.65 E-value=8.6 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 5 LEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 5 l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
....|..+...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 355677777778888888888777763
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.26 E-value=45 Score=28.71 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCH--HHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc------CCC
Q 024778 36 AELFADRAQASIKLQNF--TEAVADANRAIEL-----EPSMSKAYWRKATACMKLEEYETAKVALEKGASL------APG 102 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~l-----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l------~p~ 102 (262)
+.++.++|.+-...... ..++..|.+|+.. .-.+...|..+|-.+++.+++.+|+.++..+-.. ..+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 334 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD 334 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 55666666554433211 1256666666654 2335567888899999999999999998776542 234
Q ss_pred CHHHHHHHHHHHHHH
Q 024778 103 DSRFTNLIKECEERI 117 (262)
Q Consensus 103 ~~~~~~~l~~~~~~l 117 (262)
|.++...+-.+...+
T Consensus 335 DeEIYKEf~eIAnel 349 (472)
T 3re2_A 335 DEEMYKEFHEIANDL 349 (472)
T ss_dssp GHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555665555544433
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.82 E-value=49 Score=24.81 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=45.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHH-HHHH--HHHhhcHHHHHHHHHHhhc
Q 024778 40 ADRAQASIKLQNFTEAVADANRAIELEPSM------SKAYWR-KATA--CMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 40 ~~~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~-~g~~--~~~lg~~~~A~~~~~~a~~ 98 (262)
+..|..++..|+|-+|-+.++.+-...+.. .+.+.+ ++.+ +...|+...|...|.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777778899999999999998776554 344455 4444 4457999999999999987
No 320
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=58.59 E-value=79 Score=31.36 Aligned_cols=69 Identities=6% Similarity=-0.127 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc--CCCCHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAYWRKATACMKLEEYETAKVALEKGASL--APGDSR 105 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l--~p~~~~ 105 (262)
..|..+-.+|++.|+.++|...+.....+ -..+...|..+-..|...|++++|...|....+. .|+...
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34777888999999999999999764432 2336678888999999999999999999998764 465443
No 321
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=57.77 E-value=40 Score=22.62 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHH----HHHHHHHHHHH
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT----NLIKECEERIA 118 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~----~~l~~~~~~l~ 118 (262)
+.....-|.-++..++|.+|...|+++..+.. ++.+. ..+..|..++.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te-n~~i~ki~~fyl~ec~kkla 104 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD-NEEIKKIASFYLEECRKKLA 104 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHHhc
Confidence 34556677889999999999999999986643 33322 45677777664
No 322
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=61.87 E-value=2.2 Score=39.95 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhcHHH
Q 024778 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (262)
Q Consensus 37 ~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~lg~~~~ 88 (262)
.....+|...+..|+|.-|...++.++..+|++..+...++.+|.++|.-.+
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3344566666666677777777777776777766666666777766665544
No 323
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=57.09 E-value=73 Score=27.94 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHccC--HHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhc------cCCC
Q 024778 36 AELFADRAQASIKLQN--FTEAVADANRAIEL-----EPSMSKAYWRKATACMKLEEYETAKVALEKGAS------LAPG 102 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~--~~~A~~~~~~al~l-----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~------l~p~ 102 (262)
+.++.++|.+-..... ...++..|.+|+.. .......|..+|-.+++.++|.+|+.++..+-. ...+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 4455555544432211 11244455555543 223445677778888888888888888876654 2344
Q ss_pred CHHHHHHHHHH
Q 024778 103 DSRFTNLIKEC 113 (262)
Q Consensus 103 ~~~~~~~l~~~ 113 (262)
|.++...+..+
T Consensus 342 DeEiYke~~eI 352 (489)
T 4gq4_A 342 DEEIYKEFFEV 352 (489)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555554443
No 324
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=53.39 E-value=16 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCCeEEEEEEecCCCCcceEEEEeeeE-EEEEEecCCC
Q 024778 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQI-LSVSIDVPGE 217 (262)
Q Consensus 180 q~~~~v~v~i~~k~~~~~~~~v~~~~~~-~~~~~~~~~~ 217 (262)
|.++.|.+++.++|...+.+.++|.+.. ..+.+...+|
T Consensus 15 ~~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G 53 (120)
T 3isy_A 15 QEPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEH 53 (120)
T ss_dssp ECSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTC
T ss_pred cCCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCC
Confidence 4667899999999999999999998764 4777655333
No 325
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=52.81 E-value=85 Score=24.92 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=30.8
Q ss_pred HHhhCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Q 024778 13 FIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASI-KLQNFTEAVADANRAIE 64 (262)
Q Consensus 13 ~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~ 64 (262)
+..|+-+.|...|..|+.+ +|-...+..|.+..|+ .+++.++|...+..|+.
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445556677777777653 2333344555555555 45677777777777755
No 326
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.18 E-value=1.1e+02 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 024778 68 SMSKAYWRKATACMKLEEYETAKVALE 94 (262)
Q Consensus 68 ~~~~a~~~~g~~~~~lg~~~~A~~~~~ 94 (262)
.++..|..+|..|+..++|.+|..+|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 467889999999999999999988873
No 327
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.42 E-value=72 Score=28.04 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHccCHH--HHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc------CCC
Q 024778 36 AELFADRAQASIKLQNFT--EAVADANRAIEL-----EPSMSKAYWRKATACMKLEEYETAKVALEKGASL------APG 102 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~--~A~~~~~~al~l-----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l------~p~ 102 (262)
+.++.++|.+-....... .++..|.+|+.. .-.+...|..+|-.+++.+++.+|+.++..+-.. ..+
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 356 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 356 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 455555554433221111 245555555543 2234567888899999999999999998776542 234
Q ss_pred CHHHHHHHHHH
Q 024778 103 DSRFTNLIKEC 113 (262)
Q Consensus 103 ~~~~~~~l~~~ 113 (262)
|.++...+-++
T Consensus 357 DeEIYKEf~eI 367 (550)
T 3u84_A 357 DEEIYKEFFEV 367 (550)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555544443
No 328
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=50.35 E-value=30 Score=20.73 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
+.+...|..++.-.|...|++.+.+||+
T Consensus 21 qK~aK~AiSAL~feDv~tA~~~L~~AL~ 48 (53)
T 2rkl_A 21 QKLAKYAISALNYEDLPTAKDELTKALD 48 (53)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 4455555556666666666666666665
No 329
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.94 E-value=1.3e+02 Score=26.22 Aligned_cols=75 Identities=12% Similarity=-0.039 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc---cCCCCHHH
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIEL----EPS--MSKAYWRKATACMKLEEYETAKVALEKGAS---LAPGDSRF 106 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l----~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~---l~p~~~~~ 106 (262)
+.+...+|..|...|++.+|...+.....- +.. -.+.++.....|...++|..|...+.++.. -.+..+.+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 455677899999999999999988876532 111 146788889999999999999999998743 23445554
Q ss_pred HHHH
Q 024778 107 TNLI 110 (262)
Q Consensus 107 ~~~l 110 (262)
+..+
T Consensus 217 k~~~ 220 (445)
T 4b4t_P 217 KLEY 220 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 330
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.89 E-value=26 Score=23.80 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhccCCC
Q 024778 75 RKATACMKLEEYETAKVALEKGASLAPG 102 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~l~p~ 102 (262)
.+|..+...|+++.|..+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3555555555555555555555555443
No 331
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.75 E-value=58 Score=21.28 Aligned_cols=12 Identities=25% Similarity=0.075 Sum_probs=4.6
Q ss_pred HHHHHhhccCCC
Q 024778 91 VALEKGASLAPG 102 (262)
Q Consensus 91 ~~~~~a~~l~p~ 102 (262)
+.|..++...|+
T Consensus 47 e~l~~alk~e~d 58 (83)
T 2w2u_A 47 EVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHCCC
Confidence 333333333443
No 332
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=44.76 E-value=82 Score=28.10 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHHcCCC-----------CHHHHHHH
Q 024778 36 AELFADRAQASIKLQ----------------------------NFTEAVADANRAIELEPS-----------MSKAYWRK 76 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~----------------------------~~~~A~~~~~~al~l~p~-----------~~~a~~~~ 76 (262)
+++++.||.+|+.+- -|+..+++++.|+..-|. ...|+..+
T Consensus 109 aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~all 188 (517)
T 3qnk_A 109 GEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALK 188 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHH
Confidence 577777888887651 134567788888776542 23588899
Q ss_pred HHHHHHhhcHHHHHHHHHHhhcc
Q 024778 77 ATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 77 g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
|.++...++|++|..+++.++..
T Consensus 189 arv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 189 SRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 333
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.51 E-value=37 Score=22.41 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=8.2
Q ss_pred HHccCHHHHHHHHHHHH
Q 024778 47 IKLQNFTEAVADANRAI 63 (262)
Q Consensus 47 ~~~~~~~~A~~~~~~al 63 (262)
-..|+|++|+..|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555444444
No 334
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.07 E-value=73 Score=28.05 Aligned_cols=64 Identities=27% Similarity=0.100 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHHcCCC-------------------
Q 024778 36 AELFADRAQASIKLQ----------------------------NFTEAVADANRAIELEPS------------------- 68 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~----------------------------~~~~A~~~~~~al~l~p~------------------- 68 (262)
+++++.||.+|+.+= -|+.-+.+++.|+.+-|.
T Consensus 112 gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~ 191 (478)
T 3hdx_A 112 AQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQG 191 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcccccccccccccc
Confidence 577788888887651 134567788888775432
Q ss_pred ----CHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 69 ----MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 69 ----~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
...|+..+|.+|...|+|++|..+.+.++..
T Consensus 192 ~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 192 KLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 1357888999999999999999999988853
No 335
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.89 E-value=65 Score=20.99 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhccCCCCH
Q 024778 86 YETAKVALEKGASLAPGDS 104 (262)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~ 104 (262)
|.+|++.|..++...|+..
T Consensus 34 Y~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 34 YKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHCCCHH
Confidence 3344555555555555443
No 336
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=43.88 E-value=46 Score=28.64 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 21 AYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 21 Ai~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
++.+|.+|+.. .......|..+|-+|++.+++.+|++.+..|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 78888888875 233456677888899999999999998876654
No 337
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.26 E-value=38 Score=29.98 Aligned_cols=59 Identities=12% Similarity=-0.053 Sum_probs=37.9
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCC--------C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC
Q 024778 10 KEAFIDDYFELAYDLYSQAIEISP--------N--SAELFADRAQASIKLQNFTEAVADANRAIEL-EPS 68 (262)
Q Consensus 10 ~~~~~~~~~~~Ai~~~~~al~~~p--------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~p~ 68 (262)
..||+.++..-+-..+...-.... . -..+++.+|..++..++|.+|..++..|+.. .|.
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 456667766666666543322211 1 1466777888888888888888888888877 543
No 338
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.15 E-value=1.2e+02 Score=25.91 Aligned_cols=87 Identities=6% Similarity=-0.089 Sum_probs=58.2
Q ss_pred HHHhhCHHHHHHHHHHHHHhC-------C--------CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CC
Q 024778 12 AFIDDYFELAYDLYSQAIEIS-------P--------NS--AELFADRAQASIKLQNFTEAVADANRAIEL-------EP 67 (262)
Q Consensus 12 ~~~~~~~~~Ai~~~~~al~~~-------p--------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-------~p 67 (262)
.-...+.++|++.+.+....- . .. ..+....+..|+..++...|...++++-.. ++
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 345678899999988764321 0 11 345566788888899999999988887643 12
Q ss_pred C-CHHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 68 S-MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 68 ~-~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
. ....|...+..+...++|..+...+-.++.
T Consensus 166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 123445566677778888887777666664
No 339
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=41.14 E-value=36 Score=23.55 Aligned_cols=29 Identities=24% Similarity=0.025 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
|+.++..|..+.+.|+|++|.+++.+|-.
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44566667777778888888777776543
No 340
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.80 E-value=54 Score=28.83 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 20 LAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 20 ~Ai~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
.++.+|.+|+.. .......|..+|-+|++.+++.+|+..+..+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 367788888875 233456677889999999999999998776654
No 341
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.63 E-value=79 Score=27.63 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
..|+..+|.+|..+|+|++|..+.+.++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 46788899999999999999999988875
No 342
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=40.34 E-value=38 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
|+.++..|..+.+.|+|++|.+++.+|-.
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566677777788888888877776543
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.77 E-value=1.4e+02 Score=23.61 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHH
Q 024778 54 EAVADANRAIE--LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD-SRFTNLIKECEER 116 (262)
Q Consensus 54 ~A~~~~~~al~--l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~ 116 (262)
++...|..... +.-.....|-..|..+...|+|.+|...|+.++...-.- ..+.........+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 44555554443 455677888899999999999999999999999876431 2244444445555
No 344
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=39.58 E-value=48 Score=22.19 Aligned_cols=8 Identities=63% Similarity=0.501 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024778 55 AVADANRA 62 (262)
Q Consensus 55 A~~~~~~a 62 (262)
|+..+.+|
T Consensus 15 Ai~lv~~A 22 (93)
T 1wfd_A 15 AVAVLKRA 22 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 345
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.46 E-value=49 Score=21.55 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.4
Q ss_pred HccCHHHHHHHHHHHH
Q 024778 48 KLQNFTEAVADANRAI 63 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al 63 (262)
..|+|++|+..|..++
T Consensus 25 ~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGL 40 (85)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3345555444444443
No 346
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.71 E-value=44 Score=23.52 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhccCCCCH
Q 024778 87 ETAKVALEKGASLAPGDS 104 (262)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~ 104 (262)
..|+++|..++...+.++
T Consensus 42 ~~Aie~l~~alk~e~~~~ 59 (117)
T 2cpt_A 42 QHAVQYFLHVVKYEAQGD 59 (117)
T ss_dssp HHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHHhccCCH
Confidence 344444444544454443
No 347
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=38.16 E-value=42 Score=23.36 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAI 29 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al 29 (262)
|+.++..|..+.+.|+|++|.+++.+|-
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667777778888888888877763
No 348
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.00 E-value=96 Score=21.81 Aligned_cols=46 Identities=9% Similarity=0.212 Sum_probs=27.9
Q ss_pred hhCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 024778 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (262)
Q Consensus 15 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~p~ 68 (262)
...|.+|..+.++||.++.. |.-...+.-|..++..+.+++.+...
T Consensus 16 k~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 45567888888888887641 22222334466666666677766553
No 349
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=37.91 E-value=45 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE 30 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~ 30 (262)
|..++..|..+...|+++.|.-+|.+.+.
T Consensus 40 a~~llr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 40 GVEIIRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566677777777777777777766544
No 350
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=37.67 E-value=80 Score=27.62 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHc
Q 024778 36 AELFADRAQASIKL 49 (262)
Q Consensus 36 ~~~~~~~a~~~~~~ 49 (262)
+++++.||.+|+.+
T Consensus 111 gEa~flRA~~yf~L 124 (454)
T 3myv_A 111 GETMAVIALCQFDL 124 (454)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777665
No 351
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=37.26 E-value=49 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
|..++..|..++..||.-+|-+.|-+|...
T Consensus 7 Ae~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 7 AEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999888877653
No 352
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=36.95 E-value=91 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
..|+..+|.+|..+|+|++|..+.+.++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 46888899999999999999999998875
No 353
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=36.70 E-value=45 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAI 29 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al 29 (262)
|+.++..|..+.+.|+|++|.+++.+|-
T Consensus 37 ARS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 37 ARSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666667777777777777776653
No 354
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=36.68 E-value=71 Score=19.39 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=20.6
Q ss_pred HccCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhcHHHHH
Q 024778 48 KLQNFTEAVADANRAIELEPSMS-KAYWRKATACMKLEEYETAK 90 (262)
Q Consensus 48 ~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~lg~~~~A~ 90 (262)
....+++|....+ .+...+... .+-+-+...+.+.|+|++|+
T Consensus 18 G~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 18 GHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred cchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3456777766554 344444433 34556677788888888875
No 355
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=36.39 E-value=85 Score=27.50 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHc
Q 024778 36 AELFADRAQASIKL 49 (262)
Q Consensus 36 ~~~~~~~a~~~~~~ 49 (262)
+++++.||.+|+.+
T Consensus 117 gEA~flRA~~yf~L 130 (461)
T 3kez_A 117 GQALAIRGMALFDL 130 (461)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777665
No 356
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.07 E-value=70 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=34.3
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 21 AYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 21 Ai~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
++.+|.+|+.. .......|..+|-++++.++|.+|++.+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 67788888874 233456677889999999999999998887754
No 357
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=36.01 E-value=1.2e+02 Score=27.27 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHHcCCC-------------CHHHHH
Q 024778 36 AELFADRAQASIKLQ----------------------------NFTEAVADANRAIELEPS-------------MSKAYW 74 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~----------------------------~~~~A~~~~~~al~l~p~-------------~~~a~~ 74 (262)
+++++.||.+|+.+- -++.-+++++.|+..-|. ...|+.
T Consensus 123 aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~a 202 (528)
T 3i4g_A 123 AEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALA 202 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHH
Confidence 577888888887651 123456778888776551 135888
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhc
Q 024778 75 RKATACMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 75 ~~g~~~~~lg~~~~A~~~~~~a~~ 98 (262)
.+|.++...++|++|..+++.++.
T Consensus 203 llarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 203 FLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 899999999999999999998875
No 358
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.57 E-value=1e+02 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
..|+..+|.+|..+++|++|..+.+.++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457778888888888888888888888764
No 359
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=35.53 E-value=93 Score=27.43 Aligned_cols=63 Identities=16% Similarity=-0.012 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHc----------------------------cCHH-HHHHHHHHHHHc-CCC--------CHHHHHHHH
Q 024778 36 AELFADRAQASIKL----------------------------QNFT-EAVADANRAIEL-EPS--------MSKAYWRKA 77 (262)
Q Consensus 36 ~~~~~~~a~~~~~~----------------------------~~~~-~A~~~~~~al~l-~p~--------~~~a~~~~g 77 (262)
+++++.||.+|+.+ .-|+ .-+.+++.|+.. -|. ...|+..+|
T Consensus 116 aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~r~~~~evy~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~alla 195 (482)
T 3otn_A 116 AEVKFMRALYYFYLVRIFGDVPKITTVQSELGELQVSRAPVKEIYDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLA 195 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHSSBCCCCSCGGGCSCSSCCCBCHHHHHHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcceeCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHH
Confidence 57778888888765 0134 567788888876 341 246888899
Q ss_pred HHHHHhh---------cHHHHHHHHHHhhc
Q 024778 78 TACMKLE---------EYETAKVALEKGAS 98 (262)
Q Consensus 78 ~~~~~lg---------~~~~A~~~~~~a~~ 98 (262)
.+|...+ +|++|...++.++.
T Consensus 196 rvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 196 DVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 9999988 99999999998875
No 360
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.04 E-value=88 Score=27.74 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHc
Q 024778 36 AELFADRAQASIKL 49 (262)
Q Consensus 36 ~~~~~~~a~~~~~~ 49 (262)
+++++.||.+|+.+
T Consensus 119 gEA~flRA~~Yf~L 132 (495)
T 3lew_A 119 GQALALRGFLYLHL 132 (495)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57777788887765
No 361
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.85 E-value=95 Score=27.28 Aligned_cols=30 Identities=17% Similarity=0.007 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 70 SKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 70 ~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
..|+..+|.+|...|+|++|..+.+.++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 457888888999999999999888888764
No 362
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.95 E-value=34 Score=26.68 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhhCHHHH---HHHHHHHHH-hCCCCHH--HHHHHHHHHHHc--cC--------------HHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELA---YDLYSQAIE-ISPNSAE--LFADRAQASIKL--QN--------------FTEAVADAN 60 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~A---i~~~~~al~-~~p~~~~--~~~~~a~~~~~~--~~--------------~~~A~~~~~ 60 (262)
.-|+..+..+|+.+++.+= ....+.++. ..+..+. -....++++.+- |+ ++-|+..++
T Consensus 23 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~ 102 (211)
T 3bqo_A 23 DFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWG 102 (211)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHH
Confidence 4567778888988877653 334444442 2233333 223355555443 21 233444333
Q ss_pred HHHHcCCCCH---H--HHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 61 RAIELEPSMS---K--AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 61 ~al~l~p~~~---~--a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..-.-.+... . .--..-.++...|.|++|.+.|++...-++.+..+++-|..+
T Consensus 103 ~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 103 SIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp TSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 2211122111 1 112234578899999999999999998887776655555444
No 363
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.80 E-value=97 Score=27.21 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHc
Q 024778 36 AELFADRAQASIKL 49 (262)
Q Consensus 36 ~~~~~~~a~~~~~~ 49 (262)
+++++.||.+|+.+
T Consensus 123 gEa~flRA~~yf~L 136 (477)
T 3mcx_A 123 SEALVMRGLSLFNL 136 (477)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777788877765
No 364
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=35.83 E-value=11 Score=35.20 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc
Q 024778 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGE 123 (262)
Q Consensus 71 ~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~ 123 (262)
...+.+|...+..|+|..|...+..++..+|+|.+++..++.+.++++.....
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 45677888888999999999999999999999999999999999999865443
No 365
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=28.06 E-value=83 Score=23.01 Aligned_cols=30 Identities=33% Similarity=0.371 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 024778 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (262)
Q Consensus 2 a~~l~~~g~~~~~~~~~~~Ai~~~~~al~~ 31 (262)
|..++..|..+...||.+.|--+|.+.+.+
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L 71 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888888888888888888776543
No 366
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=27.62 E-value=1.5e+02 Score=20.34 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=38.9
Q ss_pred CCCeEEEEEEecCCC-CcceEEEEe---------eeEEEEEEe--c--CCCCeeeeccccccccccce-EEEeecCCCCC
Q 024778 181 KPEEVVVTVFAKGIP-AKNVTVDFG---------EQILSVSID--V--PGEEAYHFQPRLFGKVYMAY-ILLFLKGLIHH 245 (262)
Q Consensus 181 ~~~~v~v~i~~k~~~-~~~~~v~~~---------~~~~~~~~~--~--~~~~~~~~~~~L~~~i~~~~-i~l~K~~~~~W 245 (262)
+...|+-+|.++|+. .+.|.|-++ -..+..++. . ++-+.|.|.|+|.+.+. | |+-.=....-|
T Consensus 17 ~~~~l~GtV~V~NlafeK~V~VR~T~~~D~W~t~~~dv~a~y~~~~~~~~~D~F~F~i~l~~~~e--FcIrY~v~g~eyW 94 (106)
T 2djm_A 17 DGSTFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISGSNYEYWTFSASVKGIKE--FYIKYEVSGKTYY 94 (106)
T ss_dssp SSSCEEEEEEECCSSSCEEEEEEEEETTSSCSSCCCEEECEEEEECTTSSCEEEEEEECCSSEEE--EEEEEEESSCEEE
T ss_pred CCCEEEEEEEEeecCcCcEEEEEECCCcCCCccccEEEEEEEecCCCCCCeEEEEEEEECCCCeE--EEEEEEECCcEEE
Confidence 456799999999997 677888887 222333331 2 22346888888876552 4 44443333355
Q ss_pred C
Q 024778 246 P 246 (262)
Q Consensus 246 ~ 246 (262)
.
T Consensus 95 D 95 (106)
T 2djm_A 95 D 95 (106)
T ss_dssp E
T ss_pred c
Confidence 3
No 367
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.60 E-value=1.8e+02 Score=21.34 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=37.9
Q ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCC
Q 024778 54 EAVADANRAIE--LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (262)
Q Consensus 54 ~A~~~~~~al~--l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p 101 (262)
++...|..... +.-..+..|-..|..+...|++.+|...|+.+++...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 35666665554 3456677888999999999999999999999998653
No 368
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.30 E-value=1.9e+02 Score=21.50 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHH-HHHHHHHHHc--CCCCHHHHHHHHH
Q 024778 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEA-VADANRAIEL--EPSMSKAYWRKAT 78 (262)
Q Consensus 4 ~l~~~g~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A-~~~~~~al~l--~p~~~~a~~~~g~ 78 (262)
..+..++.+|-..||.+-|..+.. .+|. .....+.+|..|.+..++..- .......+.+ +|.....|
T Consensus 10 ~a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YW----- 81 (161)
T 2ynq_A 10 EAYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYW----- 81 (161)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHH-----
Confidence 456678899999999999988776 3333 256778899999998776532 2222222222 22223333
Q ss_pred HHHHhhcHHHHHHHHH
Q 024778 79 ACMKLEEYETAKVALE 94 (262)
Q Consensus 79 ~~~~lg~~~~A~~~~~ 94 (262)
++...|++++|+....
T Consensus 82 IyiGRg~~~eAlDiA~ 97 (161)
T 2ynq_A 82 IYIGRSQSEEALELAR 97 (161)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHH
Confidence 4555688888876554
No 369
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=26.87 E-value=1.7e+02 Score=20.81 Aligned_cols=12 Identities=0% Similarity=0.066 Sum_probs=5.5
Q ss_pred HhhCHHHHHHHH
Q 024778 14 IDDYFELAYDLY 25 (262)
Q Consensus 14 ~~~~~~~Ai~~~ 25 (262)
..+|.+..+..+
T Consensus 52 ~~~n~~~m~~~L 63 (126)
T 2npu_A 52 GERNVKGMFEVL 63 (126)
T ss_dssp HTTCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 444444444444
No 370
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=26.78 E-value=1.6e+02 Score=21.58 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=29.6
Q ss_pred cCCCCeEEEEEEecCCCCcceEEEEe----------eeEEEEEEecCCCCeeeecccccccccc
Q 024778 179 YQKPEEVVVTVFAKGIPAKNVTVDFG----------EQILSVSIDVPGEEAYHFQPRLFGKVYM 232 (262)
Q Consensus 179 ~q~~~~v~v~i~~k~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 232 (262)
|..++.|.|.+.++.-+++.+.+--+ ..+++|+ .+..|--....++|+.|.+-
T Consensus 22 F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVR-kis~gvGVEr~Fpl~SP~I~ 84 (146)
T 3v2d_T 22 FRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVR-KVSYGVGVERIFPLHSPLIQ 84 (146)
T ss_dssp CCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEE-EEETTEEEEEEEETTCTTEE
T ss_pred cCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEE-EecCCccEEEEEecCCCccc
Confidence 45788899988887556665554322 1244444 33334444444556655554
No 371
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=26.05 E-value=1e+02 Score=20.83 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCCcceEEEEeee----EEEEEEecCCC
Q 024778 194 IPAKNVTVDFGEQ----ILSVSIDVPGE 217 (262)
Q Consensus 194 ~~~~~~~v~~~~~----~~~~~~~~~~~ 217 (262)
+++++|+|+++.+ .|.+.|+++++
T Consensus 57 Id~~~v~V~l~~~~~~~vL~~nIpl~~~ 84 (95)
T 2kxo_A 57 VSLDNIRISQEKQDGMDVLELNITLPEQ 84 (95)
T ss_dssp CCTTSEEEEEEEETTEEEEEEEEEECCC
T ss_pred cchhheEEEEEeCCCcEEEEEEEEeCCC
Confidence 4667777777653 57778888754
No 372
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=25.72 E-value=1.6e+02 Score=19.98 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=28.9
Q ss_pred cCCCCeEEEEEEecCCCCcceEEEEe----------eeEEEEEEecCCCCeeeecccccccccc
Q 024778 179 YQKPEEVVVTVFAKGIPAKNVTVDFG----------EQILSVSIDVPGEEAYHFQPRLFGKVYM 232 (262)
Q Consensus 179 ~q~~~~v~v~i~~k~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~i~~ 232 (262)
+..++.|.|.+.++| .++.+++--+ ..+++|+ ++..|--....++|+.|.+.
T Consensus 4 f~~GDtv~V~~~i~g-~k~R~q~F~GvvI~~~~~G~~~tftvR-ki~~gvGVEr~fpl~SP~I~ 65 (98)
T 2ftc_K 4 FYVGSILRVTTADPY-ASGKISQFLGICIQRSGRGLGATFILR-NVIEGQGVEICFELYNPRVQ 65 (98)
T ss_pred cCCCCEEEEEEEECC-CceEeeeEEEEEEEEECCCCCcEEEEE-EeccCceEEEEEecCCCcee
Confidence 457888999988886 5665553221 1234443 33444444555556665554
No 373
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=25.37 E-value=3.4e+02 Score=23.73 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHc------------------------cCHHHHHHHHHHHHHcC
Q 024778 20 LAYDLYSQAIEISPNS---------AELFADRAQASIKL------------------------QNFTEAVADANRAIELE 66 (262)
Q Consensus 20 ~Ai~~~~~al~~~p~~---------~~~~~~~a~~~~~~------------------------~~~~~A~~~~~~al~l~ 66 (262)
.+|...+.+|..-+.. +++++.||.+|+.+ .-|+.-+++++.|+..-
T Consensus 104 ~~I~~aN~~i~~i~~~~~~~~~~~~gEA~flRA~~Yf~Lv~~fG~VPl~~~~~~~~~~R~s~~evy~~I~~DL~~A~~~L 183 (527)
T 3ckc_A 104 YDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADM 183 (527)
T ss_dssp HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCccccCCCcCCHHHHHHHHHHHHHHHHHhC
Q ss_pred CCC----------HHHHHHHHHHHHHh------hcHHHHHHHHHHhhc
Q 024778 67 PSM----------SKAYWRKATACMKL------EEYETAKVALEKGAS 98 (262)
Q Consensus 67 p~~----------~~a~~~~g~~~~~l------g~~~~A~~~~~~a~~ 98 (262)
|.. ..|+..+|.+|... ++|++|...++.++.
T Consensus 184 p~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 184 YEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp CCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
No 374
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=24.92 E-value=1.9e+02 Score=25.67 Aligned_cols=30 Identities=7% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 024778 36 AELFADRAQASIKLQNFTEAVADANRAIEL 65 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 65 (262)
..++..+|.+|+..++|++|+..++.++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999999999999864
No 375
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=24.07 E-value=16 Score=29.70 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhC
Q 024778 18 FELAYDLYSQAIEIS 32 (262)
Q Consensus 18 ~~~Ai~~~~~al~~~ 32 (262)
...|+.+..+|++.+
T Consensus 20 ~~~Ai~lv~~AVe~D 34 (257)
T 2ymb_A 20 STAAATVLKRAVELD 34 (257)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 376
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.81 E-value=1.7e+02 Score=19.52 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=38.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHH--HhhcHHHHHHHHHHhhc
Q 024778 41 DRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATACM--KLEEYETAKVALEKGAS 98 (262)
Q Consensus 41 ~~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~~--~lg~~~~A~~~~~~a~~ 98 (262)
..|..++..|+|-+|-+.++.+-...+.. .+.+..++.+++ ..|+. |...|.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45677778899999999999988877542 234444444444 34555 7777777765
No 377
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.92 E-value=2.9e+02 Score=22.09 Aligned_cols=9 Identities=11% Similarity=-0.152 Sum_probs=3.6
Q ss_pred cCHHHHHHH
Q 024778 50 QNFTEAVAD 58 (262)
Q Consensus 50 ~~~~~A~~~ 58 (262)
++.++|...
T Consensus 188 n~~~~Ac~l 196 (248)
T 3uzd_A 188 NAPEQACHL 196 (248)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 444444333
No 378
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.72 E-value=1.6e+02 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCC-------------CHHHHHHHHHHHHHhhcHHHHHHHHHHhhcc
Q 024778 53 TEAVADANRAIELEPS-------------MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (262)
Q Consensus 53 ~~A~~~~~~al~l~p~-------------~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l 99 (262)
+..+.+++.|+.+-|. ...|+..+|.++..+++|++|....+.++..
T Consensus 161 ~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 161 QQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567777777764321 2358889999999999999999999999864
No 379
>3vtt_A Envelope protein E; immunoglobin like domain, epitope presentation, cellular ATT viral protein, structural protein; 1.70A {Dengue virus type 3} PDB: 4ala_C*
Probab=22.66 E-value=18 Score=25.08 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=10.8
Q ss_pred cccccccCCCCeE
Q 024778 173 KYRHEFYQKPEEV 185 (262)
Q Consensus 173 ~~~~~~~q~~~~v 185 (262)
+++|+|||..+.|
T Consensus 93 ~l~~~W~k~GSsI 105 (107)
T 3vtt_A 93 ALKINWYRKGSSI 105 (107)
T ss_dssp CEEEEEEECCCC-
T ss_pred ceEEEEccCCCcC
Confidence 6899999998875
No 380
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.56 E-value=1.3e+02 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.121 Sum_probs=6.2
Q ss_pred ccCHHHHHHHHHHH
Q 024778 49 LQNFTEAVADANRA 62 (262)
Q Consensus 49 ~~~~~~A~~~~~~a 62 (262)
+++.++|...+..|
T Consensus 186 l~~~~~A~~lAk~a 199 (234)
T 2br9_A 186 LNSPDRACRLAKAA 199 (234)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34444444444433
No 381
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.39 E-value=2.9e+02 Score=21.94 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=6.5
Q ss_pred ccCHHHHHHHHHHH
Q 024778 49 LQNFTEAVADANRA 62 (262)
Q Consensus 49 ~~~~~~A~~~~~~a 62 (262)
+++.++|...+..|
T Consensus 189 ln~~~~Ac~lAk~A 202 (236)
T 3iqu_A 189 ANSPEEAISLAKTT 202 (236)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 35555554444443
No 382
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron}
Probab=22.33 E-value=1.4e+02 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=30.7
Q ss_pred ccccCCCC-eEEEEEEecCC-----CCcceEEEEeeeEEEEEEecCCCCeeeecc
Q 024778 176 HEFYQKPE-EVVVTVFAKGI-----PAKNVTVDFGEQILSVSIDVPGEEAYHFQP 224 (262)
Q Consensus 176 ~~~~q~~~-~v~v~i~~k~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
.-|.-+.+ -++++|.++|. +.+.|.|.-..+...|+|...+|..|.+.|
T Consensus 958 ~~w~~~~s~~~~~~vtl~G~w~~~~~~~~v~v~~~~~~T~l~v~~~~G~~~~~~l 1012 (1022)
T 2q1f_A 958 RPWIDNESGEIPVTVTLKGRWKVVETPYCKVVSEDKKQTVLRFLCKDGASYEVEL 1012 (1022)
T ss_dssp CTTTTCCCCCEEEEEEEESCCEECCBTTEEEEEECSSEEEEEEEECTTCEEEEEE
T ss_pred cccccCCCcceeEEEEECcEEecccCCCceEEEEcCCcEEEEEEeCCCeEEEEEE
Confidence 34554444 24455555655 356777777777777777667777777766
No 383
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.11 E-value=2.9e+02 Score=21.77 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHH--HHHHHhCCCCHH----HHHHHHHHHHHc--cC--------------HHHHHHHHH
Q 024778 3 TDLEKKAKEAFIDDYFELAYDLY--SQAIEISPNSAE----LFADRAQASIKL--QN--------------FTEAVADAN 60 (262)
Q Consensus 3 ~~l~~~g~~~~~~~~~~~Ai~~~--~~al~~~p~~~~----~~~~~a~~~~~~--~~--------------~~~A~~~~~ 60 (262)
+.|+..+..+|+.+++.+=-+.- -++|-..|-... -....++|+.+. |+ ++-|+..++
T Consensus 17 Dfyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~ 96 (235)
T 3bu8_A 17 KFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 96 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHH
Confidence 45778888899988877644432 233333443322 233455555443 21 355777776
Q ss_pred HHHHcCCCCH-------HHH-HHHHHHHHHhhcHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 024778 61 RAIELEPSMS-------KAY-WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (262)
Q Consensus 61 ~al~l~p~~~-------~a~-~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (262)
..-.-.+-.. ... -..-.++...|.|++|.+.|++...-++.+..+++-|..+
T Consensus 97 ~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 97 MIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 6655443211 111 1233456789999999999999999877766666555544
No 384
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=21.97 E-value=2.2e+02 Score=22.97 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHh----CCCCH---HHHHHHHHHHHH-ccCHHHHHHHHHHHH
Q 024778 20 LAYDLYSQAIEI----SPNSA---ELFADRAQASIK-LQNFTEAVADANRAI 63 (262)
Q Consensus 20 ~Ai~~~~~al~~----~p~~~---~~~~~~a~~~~~-~~~~~~A~~~~~~al 63 (262)
.|...|++|+.+ .|.++ .+..+.+..|+. +++.++|...+..|+
T Consensus 174 ~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 174 DALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555543 33333 222333333332 455555555555444
No 385
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.76 E-value=2.2e+02 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=21.0
Q ss_pred HHHHHHHHH--HHhhcHHHHHHHHHHhhccCCCC
Q 024778 72 AYWRKATAC--MKLEEYETAKVALEKGASLAPGD 103 (262)
Q Consensus 72 a~~~~g~~~--~~lg~~~~A~~~~~~a~~l~p~~ 103 (262)
.+..+..++ ++.|+|+.|+..+++. .+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~L-~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMELL-DLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT-SCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 344445544 7899999999999874 455544
No 386
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=21.23 E-value=1.6e+02 Score=25.83 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHHcCCC--------CHHHHHHHHHH
Q 024778 36 AELFADRAQASIKLQ----------------------------NFTEAVADANRAIELEPS--------MSKAYWRKATA 79 (262)
Q Consensus 36 ~~~~~~~a~~~~~~~----------------------------~~~~A~~~~~~al~l~p~--------~~~a~~~~g~~ 79 (262)
+++++.||.+|+.+- -|+..+++++.|+..-|. ...|+..+|.+
T Consensus 110 aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarv 189 (481)
T 3jq1_A 110 GECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKI 189 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Confidence 577788888887651 135577888888876552 24588889999
Q ss_pred HHHhhcHHHHHHHHHHhhc
Q 024778 80 CMKLEEYETAKVALEKGAS 98 (262)
Q Consensus 80 ~~~lg~~~~A~~~~~~a~~ 98 (262)
|...++|++|...++.++.
T Consensus 190 yL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 190 YVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHTTCHHHHHHHHGGGGS
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 387
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=21.16 E-value=2.3e+02 Score=20.14 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhccCCCC--HHHHHHHHHH
Q 024778 39 FADRAQASIKLQNFTEAVADANRA---IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKEC 113 (262)
Q Consensus 39 ~~~~a~~~~~~~~~~~A~~~~~~a---l~l~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~ 113 (262)
+-.-+.+|+..++.+..+..+... +...|... .-..-+..--.+..+|..++++...-.... ..++..+..+
T Consensus 43 LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~V 119 (126)
T 2npu_A 43 LEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHV 119 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 444566777888998888887655 44456543 222223334556778888888876433211 1355555555
Q ss_pred HHHHH
Q 024778 114 EERIA 118 (262)
Q Consensus 114 ~~~l~ 118 (262)
..++.
T Consensus 120 f~rI~ 124 (126)
T 2npu_A 120 FRRIS 124 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 388
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.11 E-value=95 Score=23.75 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 024778 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (262)
Q Consensus 22 i~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 64 (262)
+..|-.+|+...++..-....-.-+..+|+|++|..+......
T Consensus 18 ~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 18 TNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667776666665566666666778888888887776554
Done!