BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024779
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 96/123 (78%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG 60
+LH + RVGDL R+I FYT+ LGMKLLR + PE KY+ AF+GYGPE VIELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 61 VDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 120
VDKY++GT +GH ++VD+ A+ E I+ GG VTRE GPVKGG TVIAF+EDPDGYK E
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 121 LLE 123
L+E
Sbjct: 123 LIE 125
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%)
Query: 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 190
L MLRVGDL RSI+FY + GM+LLR +NPEYKY++A +GYGPE + V+ELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 191 VTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 250
V Y+ G AY IA+ D+ + E I+ GG VTRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 251 FVDNVD 256
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG 60
MLH + RVGDLDR+IKFYTE LGMK+LRK D+PE+KYT FLGYGPE S V+ELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 61 VDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 120
V Y +GH I V+DV + V ++ + E + +AF+ DPDGY E
Sbjct: 69 VTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYE-----DESGFMAFVVDPDGYYIE 123
Query: 121 LL 122
LL
Sbjct: 124 LL 125
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 57/80 (71%)
Query: 131 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 190
+ M+RVGDLDRSI FY + GM++LRK D PE KYT+ +GYGPE + VLELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 191 VTDYDKGNAYAQIAIGTDDV 210
VT Y AY IAIG +DV
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV 88
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 128/277 (46%), Gaps = 43/277 (15%)
Query: 2 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----------KYTNAFLGYGPEDSH 50
LH V++VG+ +T +FY + LGMK+LR + E K++ +G+GPED H
Sbjct: 29 LHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDH 88
Query: 51 FVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAF 110
FV ELTYNYGV Y +G F +A ++ P+ +
Sbjct: 89 FVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEW----------PLTEVAEGVFE 138
Query: 111 IEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTI 169
E P GYKF L R P +P+ +V L V DL +S+N++ GM++ +N E K
Sbjct: 139 TEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIY---ENDEEKQR- 194
Query: 170 AMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--------DDVYKTAEAIKLFG 221
A++GY D LEL G D+ A+ +IA +D+ K E K+
Sbjct: 195 ALLGYA--DNQCKLELQGVKGGVDH--AAAFGRIAFSCPQKELPDLEDLMKR-ENQKILT 249
Query: 222 GKVTREPGPLPGINT-KITACLDPDGWKTVFVDNVDF 257
V+ + PG T ++ DPDG + FV + F
Sbjct: 250 PLVSLD---TPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 30/148 (20%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG-----PEDSH----- 50
+ + R+ D +++ FYT LG+ LL+K D P K++ FL Y P+D
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 51 -----FVIELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKVTR 96
+ELT+N+G + Y G GFGH GIAV DV + + G K +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 97 EP--GPVKGGNTVIAFIEDPDGYKFELL 122
+P G +KG +AFI+DPDGY E+L
Sbjct: 152 KPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 97 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 153
EP P G T + DPD + L L Q MLR+ D +S++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 154 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 193
+ LL+K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 194 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 245
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 246 GW 247
G+
Sbjct: 169 GY 170
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 52
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 53 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 94
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 95 TREP--GPVKGGNTVIAFIEDPDGYKFELL 122
++P G +KG +AFI+DPDGY E+L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 97 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 153
EP P GG T ++ D D + L L Q MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 154 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 193
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 194 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 245
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 246 GW 247
G+
Sbjct: 168 GY 169
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 52
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 92
Query: 53 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 94
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 93 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 152
Query: 95 TREP--GPVKGGNTVIAFIEDPDGYKFELL 122
++P G +KG +AFI+DPDGY E+L
Sbjct: 153 VKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 92 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFY 148
G EP P GG T ++ D D + L L Q MLRV D +S++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 149 EQAFGMELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGV 191
+ GM L++K D P K+++ + Y EDKN LELT+N+G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 192 TD-----YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITA 240
D Y GN+ + I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 241 CLDPDGW 247
DPDG+
Sbjct: 167 IQDPDGY 173
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 52
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 53 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 94
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 95 TREP--GPVKGGNTVIAFIEDPDGYKFELL 122
++P G +KG +AFI+DPDGY ++L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 46/190 (24%)
Query: 97 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 153
EP P GG T ++ D D + L L + MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 154 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 193
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 194 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 245
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 246 G-WKTVFVDN 254
G W + N
Sbjct: 168 GYWIQILNPN 177
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 4/133 (3%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD 62
H+ V + + FY L +KLL D+P + AFL G + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 63 KY--DIGTGFGHFGIAVDDVAKTVELIKAKGGK-VTREPGP-VKGGNTVIAFIEDPDGYK 118
K+ G G H I V + + ++ +K G + + EP P +G G
Sbjct: 71 KFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVL 130
Query: 119 FELLERGPTPEPL 131
+E E+ E L
Sbjct: 131 YEFCEKKEQAENL 143
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 8 VGDLDRTIKFYTECLGMKLLRKRDIP--EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYD 65
V D + FYT LG L K D+P +++ P+ + ++E + + V +
Sbjct: 34 VDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVTPFK 91
Query: 66 ---IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 122
+ G AVDD+A E + A G + T+E P G V A ++D G +L
Sbjct: 92 EALVADGIPAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVVTAILDDTCGNLIQLX 149
Query: 123 E 123
+
Sbjct: 150 Q 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD 62
HV + T FY E LG ++LR+ PE+ L G ++ I +
Sbjct: 8 HVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARP 66
Query: 63 KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKFEL 121
Y G H V+ + + + + +G + EP V F DPDG EL
Sbjct: 67 SYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLEL 124
Query: 122 LE 123
E
Sbjct: 125 HE 126
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIEL------- 55
HV Y D D K+Y E G L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 56 ---TYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 107
T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 140 DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMG 173
D D + +Y++ FG L + +NPE MM
Sbjct: 19 DADEASKYYQETFGWHELHREENPEQGVVEIMMA 52
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD 62
HV V DL++ FY LG ++ +PE + F+ G +EL + G+D
Sbjct: 8 HVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPLGLD 63
Query: 63 -------KYDIGTGFGHFGIAVDDVAKTVELIKAK 90
+ + G H I VD++ V +K K
Sbjct: 64 SPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKK 98
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELT-YNYG 60
HV V D D++ +FY LG +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 61 VDKYDI-----GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD 115
I G H V+DV + + + A G +V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 116 GYKFELLE 123
G EL E
Sbjct: 127 GLPLELHE 134
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 133 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPE 164
V L V D D+S FY G E++R+ P+
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPK 39
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIEL------- 55
HV Y D D K+Y E G L + + PE+ + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 56 ---TYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 107
T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 182
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 107 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 157
Query: 183 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 239
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 158 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 214
Query: 240 ACLDPDGWKTVFVD 253
DG V +D
Sbjct: 215 EVFARDGAHVVAID 228
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 182
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 123 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 173
Query: 183 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 239
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 174 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 230
Query: 240 ACLDPDGWKTVFVD 253
DG V +D
Sbjct: 231 EVFARDGAHVVAID 244
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 182
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 115 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 165
Query: 183 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 239
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 166 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 222
Query: 240 ACLDPDGWKTVFVD 253
DG V +D
Sbjct: 223 EVFARDGAHVVAID 236
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 182
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 131 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 181
Query: 183 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 239
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 182 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 238
Query: 240 ACLDPDGWKTVFVD 253
DG V +D
Sbjct: 239 EVFARDGAHVVAID 252
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 125 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 182
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 144 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 194
Query: 183 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 239
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 195 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 251
Query: 240 ACLDPDGWKTVFVD 253
DG V +D
Sbjct: 252 EVFARDGAHVVAID 265
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 44 YGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVEL------IKAKGGKVTRE 97
+ PE+ + E G D TGFG G +++DVA V + +KA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 211 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV-----DNVDFLKELE 262
+ T + +KL G T P G+NT + +D D +TV+V D V L LE
Sbjct: 210 HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD--RTVYVADRGNDRVVKLTSLE 264
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 144 SINFYEQAFGMELLRKRDNPEYKYT-------IAMMGYGPEDKNVVLELTYNYGVTDYDK 196
+INF + G++L++KR + +A++ PE + ++E + YG+ +
Sbjct: 103 AINFED---GVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGAN 159
Query: 197 GNAYAQIAIGTDDVY--KTAEAIKLFGGKVTREPGPLP 232
N+ QI I + V K E IK GG+ + P P
Sbjct: 160 YNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAP 197
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 99
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 100 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 147
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 148 YEQAF 152
E AF
Sbjct: 283 PEAAF 287
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 99
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 100 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 147
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 148 YEQAF 152
E AF
Sbjct: 283 PEAAF 287
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 99
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 191 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 247
Query: 100 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 147
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 248 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 304
Query: 148 YEQAF 152
E AF
Sbjct: 305 PEAAF 309
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 21/125 (16%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMKLLRK-RDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV 61
H+ + V +L+++I+FY + L KLL K R + ++ E+ +
Sbjct: 8 HICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEED-----------I 56
Query: 62 DKYDIGTGFGHFGIAVDDVA----KTVELIKAKGGKVTREPGPVKGGNTVIA-FIEDPDG 116
+ +I + H V + A K V LI+ V PG + + + DPDG
Sbjct: 57 PRNEIKQSYTHXAFTVTNEALDHLKEV-LIQ---NDVNILPGRERDERDQRSLYFTDPDG 112
Query: 117 YKFEL 121
+KFE
Sbjct: 113 HKFEF 117
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 99
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 171 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 227
Query: 100 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 147
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 228 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 284
Query: 148 YEQAF 152
E AF
Sbjct: 285 PEAAF 289
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 96
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase With Cofactor And
Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase With Cofactor And
Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase With Cofactor And
Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase With Cofactor And
Substrate
Length = 330
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 43 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 96
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMK 25
H+V V D+ TI+FY E LG
Sbjct: 26 HLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 HVVYRVGDLDRTIKFYTECLGMK 25
H+V V D+ TI+FY E LG
Sbjct: 26 HLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 33 PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 84
P EK+ F G E+ H I Y YG + G F FG+ +DD K++
Sbjct: 230 PSEKF---FYIDGNENFHVSITARYLYGEEVE--GVAFVLFGVKIDDAKKSI 276
>pdb|1RER|A Chain A, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|B Chain B, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|C Chain C, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|2ALA|A Chain A, Crystal Structure Of The Semliki Forest Virus Envelope
Protein E1 In Its Monomeric Conformation
Length = 391
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 71 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---T 127
G FG ++ +L K+ R P P G + + + P G+K+ L E+G T
Sbjct: 198 GRFGDIQSRTVESNDLYANTALKLAR-PSP---GMVHVPYTQTPSGFKYWLKEKGTALNT 253
Query: 128 PEPL-CQVM--------LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED 178
P CQ+ VG++ S+N + AF ++ + T+A + D
Sbjct: 254 KAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAF-TRIVEAPTIIDLTCTVATCTHS-SD 311
Query: 179 KNVVLELTY 187
VL LTY
Sbjct: 312 FGGVLTLTY 320
>pdb|1I9W|A Chain A, Crystal Structure Of The Fusion Glycoprotein E1 From
Semliki Forest Virus
Length = 390
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 71 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---T 127
G FG ++ +L K+ R P P G + + + P G+K+ L E+G T
Sbjct: 198 GRFGDIQSRTVESNDLYANTALKLAR-PSP---GMVHVPYTQTPSGFKYWLKEKGTALNT 253
Query: 128 PEPL-CQVM--------LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED 178
P CQ+ VG++ S+N + AF ++ + T+A + D
Sbjct: 254 KAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAF-TRIVEAPTIIDLTCTVATCTHS-SD 311
Query: 179 KNVVLELTY 187
VL LTY
Sbjct: 312 FGGVLTLTY 320
>pdb|3B59|A Chain A, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|B Chain B, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|C Chain C, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|D Chain D, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|E Chain E, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|F Chain F, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
Length = 310
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 1 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG 60
+ H+V + +KF+T+ LG K+ + +LG F L N
Sbjct: 142 ISHIVLHSPNHQDXVKFFTDVLGFKV------------SDWLG------DFXCFLRCNSA 183
Query: 61 VDKYDIGTG---FGHFG---IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDP 114
+ I G H ++VDD + +K KG + PG GN ++ P
Sbjct: 184 HHRIAILPGPPCLNHVAYDXLSVDDXXRGAHRLKVKGIDIGWGPGRHTAGNNTFSYFVTP 243
Query: 115 DGYKFE 120
G+ E
Sbjct: 244 GGFVTE 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,300,554
Number of Sequences: 62578
Number of extensions: 442405
Number of successful extensions: 1061
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1006
Number of HSP's gapped (non-prelim): 71
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)