BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024780
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 150/239 (62%), Gaps = 6/239 (2%)
Query: 24 SSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQ 83
SS + RP F PS+WGD FL + D ++ ++ LK+EVR MI A Q
Sbjct: 15 SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQ 72
Query: 84 KLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGFKVPC 143
KL +D+VQRLGV+YHF +EIED LE IYH LY+ S+RFRLLR+ G+ V C
Sbjct: 73 KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAEND--LYTTSIRFRLLREHGYNVSC 130
Query: 144 DVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDV 203
DV +S+ DV+G+L LY+A +L + GEDILDEAI+FT HL V+
Sbjct: 131 DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLD 190
Query: 204 CPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
P L+E+++HAL +RR LPRVE R +LSVY ++ H+K LL+FAK+DFN++Q +H+
Sbjct: 191 HP--LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR 247
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ R+M+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAKEIEALKEQTRNMLLATGM 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ R+M+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAKEIEALKEQTRNMLLATGM 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ R+M+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAKEIEALKEQTRNMLLATGM 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ R+M+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAKEIEALKEQTRNMLLATGM 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ RSM+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAQEIEALKEQTRSMLLATGR 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI++ L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + D + + + +E EALK++ RSM+ AT
Sbjct: 4 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEK-YAQEIEALKEQTRSMLLATGR 62
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI++ L++IY+ L + +L+FRLLRQ GF
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 119
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 180 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 237
Query: 259 RIHQ 262
+H+
Sbjct: 238 MLHK 241
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 151/244 (61%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + + + + +E EALK++ R+M+ AT
Sbjct: 6 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEK-YAKEIEALKEQTRNMLLATGM 64
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 65 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 121
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 122 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 181
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 182 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 239
Query: 259 RIHQ 262
+H+
Sbjct: 240 MLHK 243
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 151/244 (61%), Gaps = 7/244 (2%)
Query: 20 ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
A V++ E+ RP+ F PSLWGD FL+ + + + + +E EALK++ R+M+ AT
Sbjct: 6 AAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEK-YAKEIEALKEQTRNMLLATGM 64
Query: 80 TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGF 139
A L L+D ++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF
Sbjct: 65 KLADTLNLIDTIERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGF 121
Query: 140 KVPCDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
+ ++ SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S
Sbjct: 122 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 181
Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQ 258
P L EQ+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q
Sbjct: 182 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 239
Query: 259 RIHQ 262
+H+
Sbjct: 240 MLHK 243
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 145/233 (62%), Gaps = 7/233 (3%)
Query: 31 RPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDA 90
RP+ F PSLWGD FL+ + + + + +E EALK++ R+M+ AT A L L+D
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEK-YAKEIEALKEQTRNMLLATGMKLADTLNLIDT 60
Query: 91 VQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGFKVPCDVXXXXX 150
++RLG++YHFE+EI+D L++IY+ L + +L+FRLLRQ GF + ++
Sbjct: 61 IERLGISYHFEKEIDDILDQIYN---QNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 117
Query: 151 XXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAE 210
SL DV G+L+LYEA H+ +DIL++A+AF+ HL+S P L E
Sbjct: 118 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP--LRE 175
Query: 211 QINHALDCPLRRALPRVETRFFL-SVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
Q+ HAL+ L + +PRVETRFF+ S+Y + + LL+FAKLDFNL+Q +H+
Sbjct: 176 QVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHK 228
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 36 FHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLG 95
+ P+ W FL L+SD + + ++++ + L+ EVR I L+L+D VQRLG
Sbjct: 20 YEPNSWDYDFL-LSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLG 78
Query: 96 VAYHFEQEIEDALEK-IYHXXXXXXXXXXLYSVSLRFRLLRQQGFKVPCDVXXXXXXXXX 154
+ Y FE +I AL++ + L++ +L FRLLRQ GF+V +
Sbjct: 79 LGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNG 138
Query: 155 XXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINH 214
+L +D + ILSLYEA LA+ GE+ILDEA F +HLK + S++ LAEQ+NH
Sbjct: 139 NFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL-SEEKIGKELAEQVNH 197
Query: 215 ALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
AL+ PL R R+E + + Y + + ++ LL+ A LD+N++Q ++Q
Sbjct: 198 ALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQ 245
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 11/228 (4%)
Query: 35 GFHPSLWGDHFLTLAS-DCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQR 93
G+ P+LW F T+ S D E + H + +V+ M+ D+ ++L+L+D ++R
Sbjct: 39 GYQPTLWD--FSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDS-IRRLELIDDLRR 95
Query: 94 LGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGFKVPCDVXX-XXXXX 152
LG++ HFE+EI + L Y+ LYS +LRFRLLRQ F V +V
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEIDERD-LYSTALRFRLLRQYDFSVSQEVFDCFKNAK 154
Query: 153 XXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKS--MVSDDVCPNNLAE 210
SLV D +G+L LYEA L+ +GE+ L A F L+ +V D+ NL
Sbjct: 155 GTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDI---NLLS 211
Query: 211 QINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQ 258
I AL+ P + R F+ Y R + T+L+ AKLDFN+VQ
Sbjct: 212 SIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQ 259
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)
Query: 36 FHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLG 95
+ P+LW +++ + + + H + L +VR ++ + P Q+L+L+ ++ LG
Sbjct: 11 YQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKME-PVQQLELIHDLKYLG 68
Query: 96 VAYHFEQEIEDALEKIYHXXX----XXXXXXXLYSVSLRFRLLRQQGFKVPCDVXX-XXX 150
++ F+ EI++ L IY+ LY +L FRLLRQ GF + DV
Sbjct: 69 LSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKN 128
Query: 151 XXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSD--DVCPNNL 208
ASL +D +G+L LYEA L +GED L+ A F L+ + + + NL
Sbjct: 129 EKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENL 188
Query: 209 AEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
I H+LD PL + VE R+F+ Y R + + + AKL+FN++Q HQ
Sbjct: 189 LLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 35 GFHPSLWGDHFL-TLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQR 93
++PS W +F+ +L SD + + H L V+ + D Q L+L+D +QR
Sbjct: 6 NYNPSRWDVNFIQSLLSDYKED--KHVIRASELVTLVKMELEKETDQIRQ-LELIDDLQR 62
Query: 94 LGVAYHFEQEIEDALEKIY-----HXXXXXXXXXXLYSVSLRFRLLRQQGFKVPCDVXXX 148
+G++ HF+ E ++ L IY + LYS SL FRLLR+ GF+V +V
Sbjct: 63 MGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDS 122
Query: 149 XXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNL 208
SL D +G+L LYEA L GE L+ A F L+ V++ +L
Sbjct: 123 FKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDL 182
Query: 209 AEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQ 258
+I ++LD PL + R ++ Y + + +L+ A LD N+VQ
Sbjct: 183 LTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQ 232
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 83 QKLQLVDAVQRLGVAYHFEQEIEDALEKIYH-------XXXXXXXXXXLYSVSLRFRLLR 135
++L +VD + RLG+ HFE+EI++AL+ +Y L + +L FRLLR
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR 359
Query: 136 QQGFKVPCDVXXXXXXXXXXXXAS---LVKDVQGILSLYEAGHLAIRGEDILDEAIAFTR 192
+ V + S KDV +L+LY A LA GE+ILDEA +F
Sbjct: 360 LHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 193 THLKSMVSDDVCPN------NLAEQINHALDCPLRRALPRVETRFFLSV----YPRVDK- 241
+L+ + + NL+++I +AL ++PRVE + + V Y R+ K
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKC 479
Query: 242 -------HDKTLLKFAKLDFNLVQRIHQ 262
+++ L+ KLDFN++Q IHQ
Sbjct: 480 VYKLPYVNNEKFLELGKLDFNIIQSIHQ 507
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 23/203 (11%)
Query: 83 QKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXX-------LYSVSLRFRLLR 135
++L LVD ++ LG+ HF+QEI+ AL+ +Y L + +L R LR
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLR 307
Query: 136 QQGFKVPCDVXXXXXXXXXXXXASLVK---DVQGILSLYEAGHLAIRGEDILDEAIAFTR 192
G+ V DV +S + +++ +++L+ A LA E +D+A F
Sbjct: 308 MHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 193 THLKSMVSDDVCPNN-LAEQINHALDCPLRRALPRVETRFFL------------SVYPRV 239
+L+ ++ + N L ++I + ++ P ++PR+E R ++ ++Y
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMP 427
Query: 240 DKHDKTLLKFAKLDFNLVQRIHQ 262
+ L+ AKLDFN+VQ +HQ
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQ 450
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 32/210 (15%)
Query: 83 QKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYS-------VSLRFRLLR 135
+ + +VD +QRLG++ +FE+EI++ L+ ++ S ++ FRLLR
Sbjct: 247 EHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLR 306
Query: 136 QQGFKVPCDVXXXXXXXXXX--XXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRT 193
Q G++V DV + V G+ +LY A LA E+IL A F+
Sbjct: 307 QHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYN 366
Query: 194 HL------KSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVY----------- 236
+L + ++ + +L +I AL+ P +LPRVETRF++ Y
Sbjct: 367 YLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKT 426
Query: 237 ----PRVDKHDKTLLKFAKLDFNLVQRIHQ 262
P V+ + L+ AK D+N Q HQ
Sbjct: 427 LYRMPYVN--NNGYLELAKQDYNNCQAQHQ 454
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 28/208 (13%)
Query: 83 QKLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXX-------LYSVSLRFRLLR 135
++L VD V+RLG+ HF++EI++AL+ +Y + ++ R+LR
Sbjct: 272 ERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILR 331
Query: 136 QQGFKVPCDVXXXXXXXXXXXXASLVKDVQGI---LSLYEAGHLAIRGEDILDEAIAFTR 192
G+ V DV L + +G+ L++ H++ GE I++EA T
Sbjct: 332 LHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTE 391
Query: 193 THLKSMVSD------DVCPNNLAEQINHALDCPLRRALPRVETRFFL------------S 234
+L++ + + N+ ++ +AL P +++PR+E R ++ +
Sbjct: 392 RYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKT 451
Query: 235 VYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
VY ++ L+ AKLDFN VQ IHQ
Sbjct: 452 VYMMPYISNEKYLELAKLDFNKVQSIHQ 479
>pdb|1GNC|A Chain A, Structure And Dynamics Of The Human Granulocyte Colony-
Stimulating Factor Determined By Nmr Spectroscopy. Loop
Mobility In A Four-Helix-Bundle Protein
Length = 178
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 48 LASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDA 107
L S+C T H EE L + + P+Q LQL + +L Q + A
Sbjct: 36 LVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQA 95
Query: 108 LEKI 111
LE I
Sbjct: 96 LEGI 99
>pdb|2PLI|A Chain A, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|B Chain B, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|C Chain C, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
pdb|2PLI|D Chain D, Crystal Structure Of Putative Mg2+ And Co2+
Transporter(Corc) Associated Region From Neisseria
Meningitidis Mc58
Length = 91
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 163 DVQGILSLYEAGHLAIRGEDILDEAIAFT 191
D G L + E GHL +RGE +L + FT
Sbjct: 45 DTIGGLVIQELGHLPVRGEKVLIGGLQFT 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,438,132
Number of Sequences: 62578
Number of extensions: 218364
Number of successful extensions: 635
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 21
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)