Query 024780
Match_columns 262
No_of_seqs 154 out of 739
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 4.6E-78 1E-82 596.1 21.3 229 31-262 1-237 (542)
2 PF01397 Terpene_synth: Terpen 100.0 1.3E-61 2.9E-66 421.4 13.5 176 41-216 1-183 (183)
3 PLN02279 ent-kaur-16-ene synth 100.0 1.7E-58 3.8E-63 471.7 16.1 181 78-262 267-471 (784)
4 PLN02592 ent-copalyl diphospha 100.0 3.9E-57 8.5E-62 461.3 15.8 182 78-262 307-519 (800)
5 cd07604 BAR_ASAPs The Bin/Amph 46.5 36 0.00078 30.6 4.7 85 58-152 13-100 (215)
6 PF11848 DUF3368: Domain of un 38.1 16 0.00035 25.0 0.9 24 127-150 21-44 (48)
7 PF14164 YqzH: YqzH-like prote 34.7 22 0.00048 26.4 1.2 19 131-149 11-29 (64)
8 COG4738 Predicted transcriptio 31.7 80 0.0017 26.2 4.1 81 85-172 14-102 (124)
9 KOG3906 Tryptophan 2,3-dioxyge 30.7 68 0.0015 30.6 4.0 106 67-180 86-209 (399)
10 COG3063 PilF Tfp pilus assembl 30.6 4.5E+02 0.0098 24.5 9.3 145 65-246 53-209 (250)
11 KOG3951 Uncharacterized conser 28.3 91 0.002 29.5 4.3 57 151-217 264-320 (321)
12 cd03569 VHS_Hrs_Vps27p VHS dom 28.0 1E+02 0.0022 25.7 4.3 23 121-143 119-141 (142)
13 PF08373 RAP: RAP domain; Int 25.5 54 0.0012 22.5 1.9 26 124-149 17-42 (58)
14 PF11000 DUF2840: Protein of u 25.2 40 0.00087 28.9 1.4 15 84-98 97-111 (149)
15 COG1725 Predicted transcriptio 23.7 1.7E+02 0.0036 24.4 4.7 69 122-190 47-119 (125)
16 KOG3109 Haloacid dehalogenase- 23.1 78 0.0017 29.2 2.9 46 92-152 47-92 (244)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=4.6e-78 Score=596.06 Aligned_cols=229 Identities=50% Similarity=0.865 Sum_probs=212.2
Q ss_pred CCCCCCCCCCCcc-cccccCCCCccccchHHHHHHHHHHHHHHHHhhc--CCChhhhhhhhHHHHHhCcccccHHHHHHH
Q 024780 31 RPIEGFHPSLWGD-HFLTLASDCETNDTTHQEEYEALKQEVRSMITAT--ADTPAQKLQLVDAVQRLGVAYHFEQEIEDA 107 (262)
Q Consensus 31 Rr~a~~~PsiW~d-~fl~~~~~~~~~~~~~~~~~e~LkeeVr~ml~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI~~~ 107 (262)
||+++|+||+||| .|+++++++.. ...+.+++++||++||+||... +.|++++|+|||+||||||+|||++||+++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 7899999999999 66666554432 2267889999999999999864 679999999999999999999999999999
Q ss_pred HHHHHhccCC-C-CCCCchhhHHHHHHHHHhcCccccccccccccccccccccchhhcHHHHHHHHHhhccCCcCchHHH
Q 024780 108 LEKIYHDDFD-N-NDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILD 185 (262)
Q Consensus 108 L~~iy~~~~~-~-~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~iLd 185 (262)
|++||++|.+ . ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+++||+|||
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 9999998832 1 2357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC---CCCChhHHHHHHHhcCCCccCCcchhHHhhhhhccCCCCCCCHHHHHHHHHhhHHHHhhcC
Q 024780 186 EAIAFTRTHLKSMVSD---DVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262 (262)
Q Consensus 186 eA~~Ft~~~L~~~~~~---~~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~LLelAklDFn~~Qs~hq 262 (262)
||+.||++||++.++. ++++ |+++|++||++||||++||||||+||+.|++++++|++||||||+|||+||++||
T Consensus 160 eA~~ft~~~L~~~~~~~~~~~~~--l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq 237 (542)
T cd00684 160 EALSFTTKHLEEKLESNWIIDPD--LSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ 237 (542)
T ss_pred HHHHHHHHHHHHHhhccCCCCch--HHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence 9999999999999986 6777 9999999999999999999999999999999999999999999999999999997
No 2
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.3e-61 Score=421.35 Aligned_cols=176 Identities=52% Similarity=0.851 Sum_probs=148.5
Q ss_pred Cccccccc-----CCCCccccchHHHHHHHHHHHHHHHHhhcCCChhhhhhhhHHHHHhCcccccHHHHHHHHHHHHhcc
Q 024780 41 WGDHFLTL-----ASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDD 115 (262)
Q Consensus 41 W~d~fl~~-----~~~~~~~~~~~~~~~e~LkeeVr~ml~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~ 115 (262)
|||+|++. +++.....+++.+++++||++||.||.....|++++|+|||+||||||+|||++||+++|++||+.|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999942 2211223467899999999999999987445899999999999999999999999999999999998
Q ss_pred CC-CCCCCchhhHHHHHHHHHhcCccccccccccccccccccccchhhcHHHHHHHHHhhccCCcCchHHHHHHHHHHHH
Q 024780 116 FD-NNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTH 194 (262)
Q Consensus 116 ~~-~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~~ 194 (262)
.. .....|||+|||+|||||||||+||||||++|+|++|+|+.++++||+|||+|||||||+++||+|||+|+.||+++
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 33 22345999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCC-CChhHHHHHHHhc
Q 024780 195 LKSMVSDDV-CPNNLAEQINHAL 216 (262)
Q Consensus 195 L~~~~~~~~-~~~~L~~~V~~aL 216 (262)
|++++++.. ++++|+++|+|||
T Consensus 161 L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHhC
Confidence 999998553 2224999999997
No 3
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.7e-58 Score=471.72 Aligned_cols=181 Identities=30% Similarity=0.509 Sum_probs=168.0
Q ss_pred CCChhhhhhhhHHHHHhCcccccHHHHHHHHHHHHhccCCC--CCCCchhhHHHHHHHHHhcCccccccccccccccccc
Q 024780 78 ADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDN--NDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGK 155 (262)
Q Consensus 78 ~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~--~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~ 155 (262)
|.++++++++||+||||||+|||++||+++|+.+|++|... ....|+++|||+|||||||||+||||||++|+|+ +
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence 57899999999999999999999999999999999988321 1247999999999999999999999999999965 4
Q ss_pred cccch---hhcHHHHHHHHHhhccCCcCchHHHHHHHHHHHHHHhhhcC-------CCCChhHHHHHHHhcCCCccCCcc
Q 024780 156 FKASL---VKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSD-------DVCPNNLAEQINHALDCPLRRALP 225 (262)
Q Consensus 156 F~~~l---~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~~~L~~~V~~aL~~P~h~~l~ 225 (262)
|++++ .+||+|||+|||||||++|||+|||||+.||++||++.++. ++++ |+++|++||++|||+++|
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~--L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKY--IKKEVEDALNFPYYANLE 422 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCcc--HHHHHHHHhcCchhcCcc
Confidence 99988 59999999999999999999999999999999999998874 4566 999999999999999999
Q ss_pred hhHHhhhhhccCCCCC------------CCHHHHHHHHHhhHHHHhhcC
Q 024780 226 RVETRFFLSVYPRVDK------------HDKTLLKFAKLDFNLVQRIHQ 262 (262)
Q Consensus 226 RleaR~yI~~Y~~~~~------------~n~~LLelAklDFn~~Qs~hq 262 (262)
|||||+||+.|++++. +|+.||||||+|||+||++||
T Consensus 423 RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq 471 (784)
T PLN02279 423 RLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHR 471 (784)
T ss_pred HHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 799999999999999999997
No 4
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=3.9e-57 Score=461.28 Aligned_cols=182 Identities=32% Similarity=0.539 Sum_probs=167.0
Q ss_pred CCChhhhhhhhHHHHHhCcccccHHHHHHHHHHHHhccCC-CC------CCCchhhHHHHHHHHHhcCcccccccccccc
Q 024780 78 ADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFD-NN------DDVDLYSVSLRFRLLRQQGFKVPCDVFEKFK 150 (262)
Q Consensus 78 ~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~-~~------~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fk 150 (262)
|.+++++|+|||+||||||+|||++||+++|+.+|++|.. .. ...|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 5799999999999999999999999999999999998832 10 1379999999999999999999999999998
Q ss_pred ccccccccch---hhcHHHHHHHHHhhccCCcCchHHHHHHHHHHHHHHhhhc--C------CCCChhHHHHHHHhcCCC
Q 024780 151 DDEGKFKASL---VKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVS--D------DVCPNNLAEQINHALDCP 219 (262)
Q Consensus 151 d~~G~F~~~l---~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~~~L~~~V~~aL~~P 219 (262)
+ +|+|+..+ .+|++|||+|||||||+++||+|||+|+.||+++|++.+. + ++++ |+++|+|||++|
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~--L~~eV~~AL~~P 463 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKD--LPGEVGFALEIP 463 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCcc--HHHHHHHhccCh
Confidence 6 89998655 7999999999999999999999999999999999999863 1 3456 999999999999
Q ss_pred ccCCcchhHHhhhhhccCCCCCC-------------CHHHHHHHHHhhHHHHhhcC
Q 024780 220 LRRALPRVETRFFLSVYPRVDKH-------------DKTLLKFAKLDFNLVQRIHQ 262 (262)
Q Consensus 220 ~h~~l~RleaR~yI~~Y~~~~~~-------------n~~LLelAklDFn~~Qs~hq 262 (262)
|||+|||||||+||+.|++++++ |+.||||||+|||+||++||
T Consensus 464 ~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq 519 (800)
T PLN02592 464 WYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQ 519 (800)
T ss_pred hhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999987764 99999999999999999998
No 5
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=46.48 E-value=36 Score=30.62 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCC-hhhhhhhhHHHHHhCcccc--cHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHH
Q 024780 58 THQEEYEALKQEVRSMITATADT-PAQKLQLVDAVQRLGVAYH--FEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLL 134 (262)
Q Consensus 58 ~~~~~~e~LkeeVr~ml~~~~~d-~~~~L~lID~LqRLGI~yh--Fe~EI~~~L~~iy~~~~~~~~~~dL~~~AL~FRLL 134 (262)
..+.+.++++.-+|.|..+ ..+ .-....++++|+.||=..- .+.+|..+|...-. -+..++=.+-.|
T Consensus 13 ~~~~~l~Kl~K~~k~~~~~-g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~---------~l~El~~~~~~L 82 (215)
T cd07604 13 GDRVGLQKLKKAVKAIHNS-GLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV---------FTKELAALFKNL 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 4567888889999988865 333 4567889999999993221 23357777755421 244566667788
Q ss_pred HhcCcccccccccccccc
Q 024780 135 RQQGFKVPCDVFEKFKDD 152 (262)
Q Consensus 135 RqhGy~VS~DvF~~Fkd~ 152 (262)
++|=-++-...+.+|..+
T Consensus 83 ~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 83 MQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887777777788888744
No 6
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.14 E-value=16 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCcccccccccccc
Q 024780 127 VSLRFRLLRQQGFKVPCDVFEKFK 150 (262)
Q Consensus 127 ~AL~FRLLRqhGy~VS~DvF~~Fk 150 (262)
+.=.+.-|+++||++|+++++.+.
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHH
Confidence 333455558889999999887764
No 7
>PF14164 YqzH: YqzH-like protein
Probab=34.72 E-value=22 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.0
Q ss_pred HHHHHhcCccccccccccc
Q 024780 131 FRLLRQQGFKVPCDVFEKF 149 (262)
Q Consensus 131 FRLLRqhGy~VS~DvF~~F 149 (262)
=+-|||.||++.++.+...
T Consensus 11 ~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHhCCcccCCCCCHH
Confidence 3679999999999988764
No 8
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=31.74 E-value=80 Score=26.23 Aligned_cols=81 Identities=25% Similarity=0.298 Sum_probs=43.4
Q ss_pred hhhhHHHHHhCcccccHHHHHHHHHHHHhccCC----CCCCCch--hhHHHHHHHHHhcCccccccccccccccccc-cc
Q 024780 85 LQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFD----NNDDVDL--YSVSLRFRLLRQQGFKVPCDVFEKFKDDEGK-FK 157 (262)
Q Consensus 85 L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~----~~~~~dL--~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~-F~ 157 (262)
-.+|+.|++|||++---. +|-.+-.+-.- ......| -.+|++.|.||.+| ||.----.+ + .+|. .+
T Consensus 14 ~~~ie~L~~lgi~R~vA~----tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKGRPik 86 (124)
T COG4738 14 YEIIELLRILGIPRNVAT----TLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKGRPIK 86 (124)
T ss_pred HHHHHHHHHcCCCchHHH----HHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCCCCce
Confidence 358999999999986422 22222111100 0001122 26899999999999 453333333 2 3453 22
Q ss_pred -cchhhcHHHHHHHHH
Q 024780 158 -ASLVKDVQGILSLYE 172 (262)
Q Consensus 158 -~~l~~Dv~glLsLYe 172 (262)
-.|+.+...+++-++
T Consensus 87 ~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 87 LYRLTVPFDEIVSEIE 102 (124)
T ss_pred EEEecCcHHHHHHHHH
Confidence 144566666665554
No 9
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=30.67 E-value=68 Score=30.60 Aligned_cols=106 Identities=24% Similarity=0.299 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCCChhhhhhhhHHHHHhCcccccHHHHHHHHHHH-------HhccCCCCCCCchhhHHHHHHHHHh---
Q 024780 67 KQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKI-------YHDDFDNNDDVDLYSVSLRFRLLRQ--- 136 (262)
Q Consensus 67 keeVr~ml~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~i-------y~~~~~~~~~~dL~~~AL~FRLLRq--- 136 (262)
-..||+||.+...|.-..|++|-.+.|.-+=--.--|--.+|+.+ |+.+- ..---.-+|.||||--
T Consensus 86 lDsvR~~l~~~v~DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL----~PASGFQSLQFRllENKlG 161 (399)
T KOG3906|consen 86 LDSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYL----TPASGFQSLQFRLLENKLG 161 (399)
T ss_pred hHHHHHHhcchhhcchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHhc----CccccchhhhHHHHhhhhh
Confidence 357999998755576777888777776543221111212233332 22220 0001135899999842
Q ss_pred ------cCccc--cccccccccccccccccchhhcHHHHHHHHHhhccCCcC
Q 024780 137 ------QGFKV--PCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRG 180 (262)
Q Consensus 137 ------hGy~V--S~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~g 180 (262)
--|+. -.|| |+|++-+-- ..++.-+.||+|-||=--++||
T Consensus 162 Vlqe~Rv~YN~qhY~dv---F~dee~~~l-~~sE~eksLLeLve~WLERTPG 209 (399)
T KOG3906|consen 162 VLQERRVKYNAQHYKDV---FNDEELKTL-NVSEEEKSLLELVESWLERTPG 209 (399)
T ss_pred hhhhhhccccHHHhhhc---cCchhhHhh-hcccccchHHHHHHHHHhcCCC
Confidence 11221 1244 434433211 1156678999999987777765
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.64 E-value=4.5e+02 Score=24.52 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhcCCChhhhhhhhHHHHHhCcccccHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHhcCcccccc
Q 024780 65 ALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCD 144 (262)
Q Consensus 65 ~LkeeVr~ml~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~D 144 (262)
.-|..+++.|...+......+-+--.-|++|---+=.++-..+|..-.+ .-|
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----------------------------~Gd 104 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----------------------------NGD 104 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------------------------ccc
Confidence 4456777778766778888888888888888655555555444422110 116
Q ss_pred ccccccccccccccchhhcHHHHHHHHHhhccCCcCch--HHHHHHHH---------HHHHHHhhhcCC-CCChhHHHHH
Q 024780 145 VFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGED--ILDEAIAF---------TRTHLKSMVSDD-VCPNNLAEQI 212 (262)
Q Consensus 145 vF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~--iLdeA~~F---------t~~~L~~~~~~~-~~~~~L~~~V 212 (262)
|.++| |-|-+....=..+|--+=+|..--.-||. .++.+.-. ++..|+..+... +.+ . +
T Consensus 105 VLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~---~ 175 (250)
T COG3063 105 VLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--P---A 175 (250)
T ss_pred hhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--h---H
Confidence 77766 66655555556677777777766655553 45544322 235565555422 112 1 2
Q ss_pred HHhcCCCccCCcchhHHhhhhhccCCCCCCCHHH
Q 024780 213 NHALDCPLRRALPRVETRFFLSVYPRVDKHDKTL 246 (262)
Q Consensus 213 ~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~L 246 (262)
.-.+-.+....=.+..||-|++.|.+...-+..-
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 2223334455566789999999998876655443
No 11
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=91 Score=29.45 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=40.0
Q ss_pred ccccccccchhhcHHHHHHHHHhhccCCcCchHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHhcC
Q 024780 151 DDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALD 217 (262)
Q Consensus 151 d~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~L~~~V~~aL~ 217 (262)
+.+|-|...-+-|++|-..|-.+-- ....| -|=.|..||++||... + -+++|++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~e-~LLnaLRfTTKHlNde------s--TpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQSE-CLLNALRFTTKHLNDE------S--TPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhhH-HHHHHHHHHHhhcCCC------C--ChHHHHHHhc
Confidence 4678888888889999999887753 33333 4567899999998642 2 2455666553
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=27.99 E-value=1e+02 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCchhhHHHHHHHHHhcCccccc
Q 024780 121 DVDLYSVSLRFRLLRQQGFKVPC 143 (262)
Q Consensus 121 ~~dL~~~AL~FRLLRqhGy~VS~ 143 (262)
..++..+.=.+..||..||..++
T Consensus 119 ~~~l~~i~~~y~~L~~~G~~FP~ 141 (142)
T cd03569 119 KPQLKYVVDTYQILKAEGHKFPE 141 (142)
T ss_pred CcccHHHHHHHHHHHHcCCCCCC
Confidence 35777788889999999998764
No 13
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=25.55 E-value=54 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHhcCccccccccccc
Q 024780 124 LYSVSLRFRLLRQQGFKVPCDVFEKF 149 (262)
Q Consensus 124 L~~~AL~FRLLRqhGy~VS~DvF~~F 149 (262)
+..++|.=|+|+..||.|-+=.|-.+
T Consensus 17 ~g~t~lk~r~L~~~G~~Vi~Ip~~eW 42 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKVISIPYYEW 42 (58)
T ss_pred chHHHHHHHHHHHCCCEEEEecHHHH
Confidence 36799999999999999976555444
No 14
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=25.24 E-value=40 Score=28.94 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.7
Q ss_pred hhhhhHHHHHhCccc
Q 024780 84 KLQLVDAVQRLGVAY 98 (262)
Q Consensus 84 ~L~lID~LqRLGI~y 98 (262)
-|..||+|+.|||+-
T Consensus 97 VL~~IDaiEalGidp 111 (149)
T PF11000_consen 97 VLQAIDAIEALGIDP 111 (149)
T ss_pred HHHHHhHHHHcCCCh
Confidence 366899999999974
No 15
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=23.66 E-value=1.7e+02 Score=24.40 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=40.8
Q ss_pred CchhhHHHHHHHHHhcCccccccccccccccccc--cccchhhcHHHHHH--HHHhhccCCcCchHHHHHHHH
Q 024780 122 VDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGK--FKASLVKDVQGILS--LYEAGHLAIRGEDILDEAIAF 190 (262)
Q Consensus 122 ~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~--F~~~l~~Dv~glLs--LYeAS~L~~~gE~iLdeA~~F 190 (262)
-+.+|++=+|+.|.+.||=-+---...|.-++|. +...-..=+...|+ +.+|..+++.-|+|++=...+
T Consensus 47 VNpnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~~ 119 (125)
T COG1725 47 VNPNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKEI 119 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4688999999999999986665444444333322 10000111223333 678888888877776655444
No 16
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=23.09 E-value=78 Score=29.25 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=34.3
Q ss_pred HHhCcccccHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHhcCcccccccccccccc
Q 024780 92 QRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDD 152 (262)
Q Consensus 92 qRLGI~yhFe~EI~~~L~~iy~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~ 152 (262)
++|||+ ++|....-...|+.+ ++..+=|+.+||..+.|-|..|-++
T Consensus 47 eklgi~---~e~a~~L~~~~yk~Y------------G~t~aGL~~~~~~~d~deY~~~V~~ 92 (244)
T KOG3109|consen 47 EKLGIS---EEEAEELRESLYKEY------------GLTMAGLKAVGYIFDADEYHRFVHG 92 (244)
T ss_pred HHhCCC---hhhhHHHHHHHHHHH------------hHHHHHHHHhcccCCHHHHHHHhhc
Confidence 567776 455555555566554 6777889999999999999999754
Done!